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Conserved domains on  [gi|910354561|ref|YP_009160975|]
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NADH dehydrogenase subunit 6 (mitochondrion) [Cornufer vitianus]

Protein Classification

NADH dehydrogenase subunit 6( domain architecture ID 10009550)

NADH dehydrogenase subunit 6 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND6 MTH00065
NADH dehydrogenase subunit 6; Provisional
 1-161 9.13e-48

NADH dehydrogenase subunit 6; Provisional


:

Pssm-ID: 214415  Cd Length: 172  Bit Score: 152.31  E-value: 9.13e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910354561   1 MIFELFLLFSMMSVASNPSPHYAVLGLVWGGGMGCLVLMKWGVSFLCLVLFLVYLGGMMVVFGYSVALVAEPYPKAWGSG 80
Cdd:MTH00065   6 FLGMLGLVVGLVAVASNPSPYFAALGLVLGAVCGCLVLVELGVSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPEAWGSW 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910354561  81 GVLVYLGIYSMLLMVGWVGWGVC----SMEVVGELGVETVLVGWWGVSVLFS-GGWLLMLSGWALFLSLFVVLEIVE-FK 154
Cdd:MTH00065  86 SVLVYVLFYLLLLIVGYILFGCNfsleFLFTNYDTEFSVVGYDWGGVGLMYSsGGWFLMISGWVLLLTLFVVLEVTRgLS 165


                 ....*..
gi 910354561 155 CGALRAV 161
Cdd:MTH00065 166 RGSLRAV 172
 
Name Accession Description Interval E-value
ND6 MTH00065
NADH dehydrogenase subunit 6; Provisional
 1-161 9.13e-48

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214415  Cd Length: 172  Bit Score: 152.31  E-value: 9.13e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910354561   1 MIFELFLLFSMMSVASNPSPHYAVLGLVWGGGMGCLVLMKWGVSFLCLVLFLVYLGGMMVVFGYSVALVAEPYPKAWGSG 80
Cdd:MTH00065   6 FLGMLGLVVGLVAVASNPSPYFAALGLVLGAVCGCLVLVELGVSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPEAWGSW 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910354561  81 GVLVYLGIYSMLLMVGWVGWGVC----SMEVVGELGVETVLVGWWGVSVLFS-GGWLLMLSGWALFLSLFVVLEIVE-FK 154
Cdd:MTH00065  86 SVLVYVLFYLLLLIVGYILFGCNfsleFLFTNYDTEFSVVGYDWGGVGLMYSsGGWFLMISGWVLLLTLFVVLEVTRgLS 165


                 ....*..
gi 910354561 155 CGALRAV 161
Cdd:MTH00065 166 RGSLRAV 172
Oxidored_q3 pfam00499
NADH-ubiquinone/plastoquinone oxidoreductase chain 6;
14-150 1.25e-05

NADH-ubiquinone/plastoquinone oxidoreductase chain 6;


Pssm-ID: 459832 [Multi-domain]  Cd Length: 141  Bit Score: 42.49  E-value: 1.25e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910354561   14 VASNPSPHYAVLGLVWGGGMGCLVLMKWGVSFLCLVLFLVYLGGMMVVFGYSVALV-AEPYPKAWGSGGVLVYLGIY-SM 91
Cdd:pfam00499   3 VVTSRNPVHSALFLVLTFFGVAGLYLLLGAEFLAAVQVLVYVGAIMVLFLFVIMLLlAEEEPEKLRSGLPLAALLLGlLL 82

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 910354561   92 LLMVGWVGWGVCSMEVVGELGVETVLVGWWGVSVLFSGGWLLMLSGWALFLSLFVVLEI 150
Cdd:pfam00499  83 LALLLLVLLSASLTPAAAAAAPDVGNIEAIGELLFTDYLLPFELASVLLLVALVGAIVL 141
 
Name Accession Description Interval E-value
ND6 MTH00065
NADH dehydrogenase subunit 6; Provisional
 1-161 9.13e-48

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214415  Cd Length: 172  Bit Score: 152.31  E-value: 9.13e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910354561   1 MIFELFLLFSMMSVASNPSPHYAVLGLVWGGGMGCLVLMKWGVSFLCLVLFLVYLGGMMVVFGYSVALVAEPYPKAWGSG 80
Cdd:MTH00065   6 FLGMLGLVVGLVAVASNPSPYFAALGLVLGAVCGCLVLVELGVSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPEAWGSW 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910354561  81 GVLVYLGIYSMLLMVGWVGWGVC----SMEVVGELGVETVLVGWWGVSVLFS-GGWLLMLSGWALFLSLFVVLEIVE-FK 154
Cdd:MTH00065  86 SVLVYVLFYLLLLIVGYILFGCNfsleFLFTNYDTEFSVVGYDWGGVGLMYSsGGWFLMISGWVLLLTLFVVLEVTRgLS 165


                 ....*..
gi 910354561 155 CGALRAV 161
Cdd:MTH00065 166 RGSLRAV 172
ND6 MTH00138
NADH dehydrogenase subunit 6; Provisional
 1-161 7.83e-41

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 177196  Cd Length: 173  Bit Score: 134.88  E-value: 7.83e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910354561   1 MIFELFLLFSMMSVASNPSPHYAVLGLVWGGGMGCLVLMKWGVSFLCLVLFLVYLGGMMVVFGYSVALVAEPYPKAWGSG 80
Cdd:MTH00138   6 SLFLLGLVLGLVAVASNPSPYFAALGLVVVAGVGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPESWGSW 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910354561  81 GVLVYLGIYSMLLMVG----WVGWGVCSMEVVGELGVETVLVG-WWGVSVLFS-GGWLLMLSGWALFLSLFVVLEIVE-F 153
Cdd:MTH00138  86 SVLGYVVGYLVGVVLAaglfWGGWYEGSWVVVDELKEFSVLRGdVGGVALMYSsGGGMLVICAWVLLLTLFVVLELTRgL 165


                 ....*...
gi 910354561 154 KCGALRAV 161
Cdd:MTH00138 166 SRGALRAV 173
ND6 MTH00115
NADH dehydrogenase subunit 6; Provisional
 1-161 2.11e-26

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214424  Cd Length: 174  Bit Score: 97.90  E-value: 2.11e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910354561   1 MIFELFLLFSMMSVASNPSPHYAVLGLVWGGGMGCLVLMKWGVSFLCLVLFLVYLGGMMVVFGYSVALVAEPYPKAWGSG 80
Cdd:MTH00115   6 FLLGVCFVLGVVGVASNPSPYYGVVSLVLASVFGCGVLVSLGGSFVSLVLFLVYLGGMLVVFAYSVSLAADPYPEAWGDW 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910354561  81 GVLVYLGIYSMLLMV------GWVGWGVCSMEVVGELGVETVLVGWWGVSVLFS-GGWLLMLSGWALFLSLFVVLEIVE- 152
Cdd:MTH00115  86 GVVGYVVGFVLVVVVvgvvvgGLWGMEGVGVVTVDSGGLFVVRLDFSGVSLFYSsGGGGLLVCGWGLLLTLFVVLELVRg 165


                 ....*....
gi 910354561 153 FKCGALRAV 161
Cdd:MTH00115 166 LSRGALRAF 174
ND6 MTH00109
NADH dehydrogenase subunit 6; Provisional
 2-151 4.62e-26

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214421  Cd Length: 175  Bit Score: 97.18  E-value: 4.62e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910354561   2 IFELFLLFSMMSVASNPSPHYAVLGLVWGGGMGCLVLMKWGVSFLCLVLFLVYLGGMMVVFGYSVALVAEPYPKAWGSGG 81
Cdd:MTH00109   8 ILSVLFVLGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLSFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEEYPETWVSNK 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910354561  82 VLVYLGIYSMLLMVGWVGWGVCSMEVV--------------GELGVETVLVGWWGVSVLFS-GGWLLMLSGWALFLSLFV 146
Cdd:MTH00109  88 VVLGALLLGLLMELLLVLYVLKDDEVEvvfnfnglgdwviyDTGGSGFFSEDAMGVAALYSyGTWLVVVTGWSLFIGVFV 167


                 ....*
gi 910354561 147 VLEIV 151
Cdd:MTH00109 168 IIEIT 172
ND6 MTH00214
NADH dehydrogenase subunit 6; Provisional
 1-161 4.59e-19

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214461  Cd Length: 168  Bit Score: 78.88  E-value: 4.59e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910354561   1 MIFELFLLFSMMSVASNPSPHYAVLGLVWGGGMGCLVLMKWGVSFLCLVLFLVYLGGMMVVFGYSVALVAEPYPKAWGSG 80
Cdd:MTH00214   6 FLLMFGFLLGLMMVASSPSPYFGALGLVLLALLGCFLLLSHGNSFLGLILFLIYLGGMLVVFSYSAALAADPYPESWGGW 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910354561  81 GVLVYLGIYSMLLMVGWVGWGVCSMEVVGELGVETVLVGWWGVSVLFS-GGWLLMLSGWALFLSLFVVLEIV-EFKCGAL 158
Cdd:MTH00214  86 SVLLFFLFYLLGLGFVGFYFYGGWEMLSWMGVDEANNLDLSGVSDLYSrGFFLLLLGGVVLFLVLFVVLELVrGLSRGAL 165


                 ...
gi 910354561 159 RAV 161
Cdd:MTH00214 166 RVV 168
ND6 MTH00045
NADH dehydrogenase subunit 6; Validated
 2-150 4.06e-13

NADH dehydrogenase subunit 6; Validated


Pssm-ID: 177120  Cd Length: 162  Bit Score: 63.00  E-value: 4.06e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910354561   2 IFELFLLFSMMSVASNPSPHYAVLGLVWGGGMGCLVLMKWGVSFLCLVLFLVYLGGMMVVFGYSVALVAEPYPKAWGSGG 81
Cdd:MTH00045   5 LFLILMLFGSTLVFYSLSPYYSALGLVLVSLSGCLLLSLLGLSFLALLLLLIYMGGMLVVFVYSSALSAERYPSVSNLGE 84

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 910354561  82 VLVYLGIYSMLLMVG---WVGWGVCSMEVVGELGVEtvlvgwwGVSVLF-SGGWLLMLSGWALFLSLFVVLEI 150
Cdd:MTH00045  85 VLVLSLLLSLWVFISfdnFLELSNNNWSLVSLSDLV-------GSSELYnSGGLYLLLGGFILLVALVVALVI 150
Oxidored_q3 pfam00499
NADH-ubiquinone/plastoquinone oxidoreductase chain 6;
14-150 1.25e-05

NADH-ubiquinone/plastoquinone oxidoreductase chain 6;


Pssm-ID: 459832 [Multi-domain]  Cd Length: 141  Bit Score: 42.49  E-value: 1.25e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910354561   14 VASNPSPHYAVLGLVWGGGMGCLVLMKWGVSFLCLVLFLVYLGGMMVVFGYSVALV-AEPYPKAWGSGGVLVYLGIY-SM 91
Cdd:pfam00499   3 VVTSRNPVHSALFLVLTFFGVAGLYLLLGAEFLAAVQVLVYVGAIMVLFLFVIMLLlAEEEPEKLRSGLPLAALLLGlLL 82

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 910354561   92 LLMVGWVGWGVCSMEVVGELGVETVLVGWWGVSVLFSGGWLLMLSGWALFLSLFVVLEI 150
Cdd:pfam00499  83 LALLLLVLLSASLTPAAAAAAPDVGNIEAIGELLFTDYLLPFELASVLLLVALVGAIVL 141
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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