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Conserved domains on  [gi|910354549|ref|YP_009160969|]
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ATP synthase F0 subunit 6 (mitochondrion) [Cornufer vitianus]

Protein Classification

FoF1 ATP synthase subunit a( domain architecture ID 116)

FoF1 ATP synthase subunit a is part of the membrane proton channel (Fo complex) of the F-type ATPase that produces ATP from ADP in the presence of a proton gradient across the membrane; it plays a direct role in the translocation of protons across the membrane

Gene Ontology:  GO:0045263|GO:0015078|GO:0015986
PubMed:  11533110|12370007|30901262

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ATP-synt_Fo_a_6 super family cl00413
ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms ...
 1-225 4.72e-82

ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms are designated as ATP synthase, Fo complex, subunit a; eukaryotic (chloroplast and mitochondrial) forms are designated as ATP synthase, Fo complex, subunit 6. The F-ATP synthases (also called FoF1-ATPases) consist of two structural domains: F1 (factor one) complex containing the soluble catalytic core, and Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. F-ATP synthase has also been found in the archaea Methanosarcina acetivorans. F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis.


The actual alignment was detected with superfamily member MTH00132:

Pssm-ID: 469762  Cd Length: 227  Bit Score: 244.01  E-value: 4.72e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910354549   1 MMMSIFNQFVLPTILGMPTMPFVIIFPWLLI-SSLNQWNPNRIHSILNWLLAYLTKQIFLPLSSKISKWSFLFMSILIYL 79
Cdd:MTH00132   1 MTLSFFDQFMSPTYLGIPLIALALTLPWILFpTPTSRWLNNRLLTLQGWFINRFTQQLLLPLNVGGHKWALLLTSLMLFL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910354549  80 MSVNLLGLLPYTFTPTTQLSLNLALAIPLWITTILIGLRNQFSKSISHLVPEGTPTLLIPALIIIESVSLMIRPLTLAIR 159
Cdd:MTH00132  81 ITLNMLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGMRNQPTHALGHLLPEGTPTPLIPVLIIIETISLFIRPLALGVR 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 910354549 160 LTANLTAGHLLIHLISSGIMVLISTSPILSLLTLIILMLLTILEIAMAVIQAYVFILLLSLYLQEN 225
Cdd:MTH00132 161 LTANLTAGHLLIQLIATAAFVLLPLMPTVAILTATLLFLLTLLEVAVAMIQAYVFVLLLSLYLQEN 226
 
Name Accession Description Interval E-value
ATP6 MTH00132
ATP synthase F0 subunit 6; Provisional
 1-225 4.72e-82

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177190  Cd Length: 227  Bit Score: 244.01  E-value: 4.72e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910354549   1 MMMSIFNQFVLPTILGMPTMPFVIIFPWLLI-SSLNQWNPNRIHSILNWLLAYLTKQIFLPLSSKISKWSFLFMSILIYL 79
Cdd:MTH00132   1 MTLSFFDQFMSPTYLGIPLIALALTLPWILFpTPTSRWLNNRLLTLQGWFINRFTQQLLLPLNVGGHKWALLLTSLMLFL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910354549  80 MSVNLLGLLPYTFTPTTQLSLNLALAIPLWITTILIGLRNQFSKSISHLVPEGTPTLLIPALIIIESVSLMIRPLTLAIR 159
Cdd:MTH00132  81 ITLNMLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGMRNQPTHALGHLLPEGTPTPLIPVLIIIETISLFIRPLALGVR 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 910354549 160 LTANLTAGHLLIHLISSGIMVLISTSPILSLLTLIILMLLTILEIAMAVIQAYVFILLLSLYLQEN 225
Cdd:MTH00132 161 LTANLTAGHLLIQLIATAAFVLLPLMPTVAILTATLLFLLTLLEVAVAMIQAYVFVLLLSLYLQEN 226
ATP_synt_6_or_A TIGR01131
ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be ...
 15-225 3.51e-42

ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be designated ATP synthase, F0 subunit A; eukaryotic (chloroplast and mitochondrial) forms should be designated ATP synthase, F0 subunit 6. The F1/F0 ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Individual subunits in each of these clusters are named differently in prokaryotes and in organelles e.g., mitochondria and chloroplast. The bacterial equivalent of subunit 6 is named subunit 'A'. It has been shown that proton is conducted though this subunit. Typically, deprotonation and reprotonation of the acidic amino acid side-chains are implicated in the process. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273458  Cd Length: 226  Bit Score: 142.35  E-value: 3.51e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910354549   15 LGMPTMPFVIIFPWLLISSLNQWNPNRIHSILNWLLAYLTKQIFLPLSSKISKWSFLFMSILIYLMSVNLLGLLPYTFTP 94
Cdd:TIGR01131  17 LLSLILLLSLLIFLISSSLSRWLIPSRWQNLMESIYEFVLSIVKSQIGGKKGKFFPLIFTLFLFILISNLLGLIPYSFTP 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910354549   95 TTQLSLNLALAIPLWITTILIGLRNQFSKSISHLVPEGTPTLLIPALIIIESVSLMIRPLTLAIRLTANLTAGHLLIHLI 174
Cdd:TIGR01131  97 TSHLSFTLGLALPLWLGLTISGFRKHPKGFLAHLVPSGTPLPLIPFLVIIETISYLARPISLSVRLFANISAGHLLLTLL 176

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 910354549  175 SSgiMVLISTSPILSLLTLIILMLLTILEIAMAVIQAYVFILLLSLYLQEN 225
Cdd:TIGR01131 177 SG--LLFSLMSSAIFALLLLILVALIILEIFVAFIQAYVFTLLTCLYLNDA 225
ATP-synt_Fo_a_6 cd00310
ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms ...
 67-223 3.38e-33

ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms are designated as ATP synthase, Fo complex, subunit a; eukaryotic (chloroplast and mitochondrial) forms are designated as ATP synthase, Fo complex, subunit 6. The F-ATP synthases (also called FoF1-ATPases) consist of two structural domains: F1 (factor one) complex containing the soluble catalytic core, and Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. F-ATP synthase has also been found in the archaea Methanosarcina acetivorans. F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis.


Pssm-ID: 349411 [Multi-domain]  Cd Length: 156  Bit Score: 117.12  E-value: 3.38e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910354549  67 KWSFLFMSILIYLMSVNLLGLLPYTFTPTTQLSLNLALAIPLWITTILIGLRNQFSKSISHLVPEGTPTLLIPALIIIES 146
Cdd:cd00310    3 KYLPLLGTLFLFILFSNLLGLIPYSFTPTSHLNVTLALALIVFLGVHILGIKKHGLGFFLHFLPPGTPLPLAPLMVPIEL 82

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 910354549 147 VSLMIRPLTLAIRLTANLTAGHLLIHLISSGIMVLIStspILSLLTLIILMLLTILEIAMAVIQAYVFILLLSLYLQ 223
Cdd:cd00310   83 ISELIRPLSLSVRLFANMFAGHLLLALLSGLVPSLLS---SVGLLPLLLPVALTLLELFVAFIQAYVFTLLTAVYIS 156
ATP-synt_A pfam00119
ATP synthase A chain;
22-223 1.06e-26

ATP synthase A chain;


Pssm-ID: 459679 [Multi-domain]  Cd Length: 216  Bit Score: 102.18  E-value: 1.06e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910354549   22 FVIIFPWLLISSLNQWNPNRIHSILNWLLAYLTKQIFLPLSSKI-SKWSFLFMSILIYLMSVNLLGLL---PYTFTPTTQ 97
Cdd:pfam00119  10 ILLLFLLLATRKTKKLVPGRLQNFVEMLVEFVDNIVKDNIGKKKgRKFFPLLLTLFFFILVSNLLGLIpksPGGFTVTAD 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910354549   98 LSLNLALAIPLWITTILIGLRNQ-FSKSISHLVPEGTPTLLIPALIIIESVSLMIRPLTLAIRLTANLTAGHLLIHLISS 176
Cdd:pfam00119  90 INVTLALALIVFLLVHYYGIKKHgLGGYFKKLFVPPVPLPLVPLLLPIEIISEFARPVSLSLRLFGNMLAGHLLLLLLAG 169

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 910354549  177 GIMVLISTSPILSLLTLIILMLLTILEIAMAVIQAYVFILLLSLYLQ 223
Cdd:pfam00119 170 LIFALLSAGFLLGVIPPLLGVAWTLFELLVAFIQAYVFTMLTAVYIS 216
AtpB COG0356
FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP ...
 19-224 1.05e-19

FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit a is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440125 [Multi-domain]  Cd Length: 212  Bit Score: 83.58  E-value: 1.05e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910354549  19 TMPFVIIFPWLLISSLnQWNPNRIHSILNWLLAYLTKQIFLPLSSKISKWSFLFMSILIYLMSVNLLGLLPYTFTPTTQL 98
Cdd:COG0356    9 AMLLLLLLFLLATRKL-KLVPGGLQNFVEMLVEFVRNQVKDTIGKKGRKFAPLLLTLFLFILVSNLLGLIPGLFPPTADI 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910354549  99 SLNLALAIPLWITTILIGLRNQ-FSKSISHLVPEGTPtLLIPALIIIESVSLMIRPLTLAIRLTANLTAGHLLIHLISSG 177
Cdd:COG0356   88 NVTLALALIVFVLVHYYGIKKKgLGGYLKHLFFPPFP-WLAPLMLPIEIISELARPLSLSLRLFGNMFAGHIILLLLAGL 166

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*..
gi 910354549 178 IMVLISTSPILSLLTLIILMLLTileiaMAVIQAYVFILLLSLYLQE 224
Cdd:COG0356  167 APFLLLGVLSLLLPVAWTAFELL-----VGFLQAYIFTMLTAVYISL 208
 
Name Accession Description Interval E-value
ATP6 MTH00132
ATP synthase F0 subunit 6; Provisional
 1-225 4.72e-82

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177190  Cd Length: 227  Bit Score: 244.01  E-value: 4.72e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910354549   1 MMMSIFNQFVLPTILGMPTMPFVIIFPWLLI-SSLNQWNPNRIHSILNWLLAYLTKQIFLPLSSKISKWSFLFMSILIYL 79
Cdd:MTH00132   1 MTLSFFDQFMSPTYLGIPLIALALTLPWILFpTPTSRWLNNRLLTLQGWFINRFTQQLLLPLNVGGHKWALLLTSLMLFL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910354549  80 MSVNLLGLLPYTFTPTTQLSLNLALAIPLWITTILIGLRNQFSKSISHLVPEGTPTLLIPALIIIESVSLMIRPLTLAIR 159
Cdd:MTH00132  81 ITLNMLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGMRNQPTHALGHLLPEGTPTPLIPVLIIIETISLFIRPLALGVR 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 910354549 160 LTANLTAGHLLIHLISSGIMVLISTSPILSLLTLIILMLLTILEIAMAVIQAYVFILLLSLYLQEN 225
Cdd:MTH00132 161 LTANLTAGHLLIQLIATAAFVLLPLMPTVAILTATLLFLLTLLEVAVAMIQAYVFVLLLSLYLQEN 226
ATP6 MTH00073
ATP synthase F0 subunit 6; Provisional
 1-225 2.20e-81

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177144  Cd Length: 227  Bit Score: 242.56  E-value: 2.20e-81
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910354549   1 MMMSIFNQFVLPTILGMPTMPFVIIFPWLLISS-LNQWNPNRIHSILNWLLAYLTKQIFLPLSSKISKWSFLFMSILIYL 79
Cdd:MTH00073   1 MNLSFFDQFLSPTLLGIPLIMLAMLLPWLLFPTpTNKWLNNRLSTLQIWFLQNFTKQLMLPLNTPGHKWALILTSLMVFL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910354549  80 MSVNLLGLLPYTFTPTTQLSLNLALAIPLWITTILIGLRNQFSKSISHLVPEGTPTLLIPALIIIESVSLMIRPLTLAIR 159
Cdd:MTH00073  81 ITMNLLGLLPYTFTPTTQLSLNLGLAVPLWLATVLIGLRNQPTASLGHLLPEGTPTLLIPILIIIETISLFIRPLALGVR 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 910354549 160 LTANLTAGHLLIHLISSGIMVLISTSPILSLLTLIILMLLTILEIAMAVIQAYVFILLLSLYLQEN 225
Cdd:MTH00073 161 LTANLTAGHLLIQLISTATLVLLPLMPTVSILTMIVLFLLTLLEIAVAMIQAYVFVLLLSLYLQEN 226
ATP6 MTH00120
ATP synthase F0 subunit 6; Provisional
 1-226 5.07e-79

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177181  Cd Length: 227  Bit Score: 236.26  E-value: 5.07e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910354549   1 MMMSIFNQFVLPTILGMPTMPFVIIFPWLLISSL-NQWNPNRIHSILNWLLAYLTKQIFLPLSSKISKWSFLFMSILIYL 79
Cdd:MTH00120   1 MNLNFFDQFSSPELLGIPLILLAMLIPALLIPSPkNRLLTNRLTTLQLWLIKLITKQLMLPLNKKGHKWALILTSLMLLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910354549  80 MSVNLLGLLPYTFTPTTQLSLNLALAIPLWITTILIGLRNQFSKSISHLVPEGTPTLLIPALIIIESVSLMIRPLTLAIR 159
Cdd:MTH00120  81 LLINLLGLLPYTFTPTTQLSMNMALAIPLWLATVLTGLRNQPTTSLAHLLPEGTPTPLIPALILIETISLLIRPLALGVR 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 910354549 160 LTANLTAGHLLIHLISSGIMVLISTSPILSLLTLIILMLLTILEIAMAVIQAYVFILLLSLYLQENS 226
Cdd:MTH00120 161 LTANLTAGHLLIQLISTATLNLLPTMPTLSLLTLIILLLLTILELAVAMIQAYVFVLLLSLYLQENT 227
ATP6 MTH00101
ATP synthase F0 subunit 6; Validated
 1-226 6.15e-68

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177163  Cd Length: 226  Bit Score: 208.27  E-value: 6.15e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910354549   1 MMMSIFNQFVLPTILGMPTMPFVIIFPWLLISSLNQWNPNRIHSILNWLLAYLTKQIFLPLSSKISKWSFLFMSILIYLM 80
Cdd:MTH00101   1 MNENLFASFITPTILGLPIVTLIIMFPSLLFPTPNRLINNRLISIQQWLIQLTSKQMMTIHNTKGQTWSLMLMSLILFIG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910354549  81 SVNLLGLLPYTFTPTTQLSLNLALAIPLWITTILIGLRNQFSKSISHLVPEGTPTLLIPALIIIESVSLMIRPLTLAIRL 160
Cdd:MTH00101  81 STNLLGLLPHSFTPTTQLSMNLGMAIPLWAGTVITGFRNKTKASLAHFLPQGTPTPLIPMLVIIETISLFIQPMALAVRL 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 910354549 161 TANLTAGHLLIHLISSGIMVLISTSPILSLLTLIILMLLTILEIAMAVIQAYVFILLLSLYLQENS 226
Cdd:MTH00101 161 TANITAGHLLIHLIGGATLALMSISTTTALITFIILILLTILEFAVALIQAYVFTLLVSLYLHDNT 226
ATP6 MTH00179
ATP synthase F0 subunit 6; Provisional
 1-225 1.11e-66

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177230  Cd Length: 227  Bit Score: 205.18  E-value: 1.11e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910354549   1 MMMSIFNQFVLPTILGMPTMPFVIIFPWLL-ISSLNQWNPNRIHSILNWLLAYLTKQIFLPLSSKISKWSFLFMSILIYL 79
Cdd:MTH00179   1 MMLSMFDQFESPSLLGIPLLALALLLPWLLfPSLTNRWLNNRLSTLQSWFFGSFTFQLMQPINKKGHKWAVLFLSLMLFL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910354549  80 MSVNLLGLLPYTFTPTTQLSLNLALAIPLWITTILIGLRNQFSKSISHLVPEGTPTLLIPALIIIESVSLMIRPLTLAIR 159
Cdd:MTH00179  81 LTLNLLGLLPYTFTPTTQLSLNLGLALPLWLGTVLYGLFNQPTIALAHLLPEGTPTPLIPMLVWIETISLLIRPLALGVR 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 910354549 160 LTANLTAGHLLIHLISSGIMVLISTSPILSLLTLIILMLLTILEIAMAVIQAYVFILLLSLYLQEN 225
Cdd:MTH00179 161 LTANITAGHLLMHLISSAVFVLMNFMGMVALLTLLVLFLLTLLEVAVAMIQAYVFVLLLSLYLQEN 226
ATP6 MTH00035
ATP synthase F0 subunit 6; Validated
 4-225 6.94e-45

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177110  Cd Length: 229  Bit Score: 149.35  E-value: 6.94e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910354549   4 SIFNQFVLPTILGMP--TMPFVIIFPWLLISSLNQWNPNRIHSILNWLLAYLTKQIFLPLSSKISKWSFLFMSILIYLMS 81
Cdd:MTH00035   6 SIFGQFSPDTILFIPltLLSSVIALSWLFFINPTNWLPSRSQSIWLTFRQEILKLIFQNTNPNTAPWAGLLTTVFILILS 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910354549  82 VNLLGLLPYTFTPTTQLSLNLALAIPLWITTILIGLRNQFSKSISHLVPEGTPTLLIPALIIIESVSLMIRPLTLAIRLT 161
Cdd:MTH00035  86 INVLGLFPYAFTSTSHISLTYSLGIPLWMSVNILGFYLAFNSRLSHLVPQGTPSFLIPLMVWIETLSLFAQPIALGLRLA 165

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 910354549 162 ANLTAGHLLIHLISSGIMVLIStSPILSLLTLIILMLLTILEIAMAVIQAYVFILLLSLYLQEN 225
Cdd:MTH00035 166 ANLTAGHLLIFLLSTAIWELSN-SPLISIITLIIFFLLFILEIGVACIQAYVFTALVHFYLEQN 228
ATP6 MTH00157
ATP synthase F0 subunit 6; Provisional
 1-224 3.57e-44

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214441  Cd Length: 223  Bit Score: 147.24  E-value: 3.57e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910354549   1 MMMSIFNQFVLPTILGMPTMPFVIIFPWLLISSLNQWNPNRIHSILNWLLAYLTKQIFLPLSSKISKWSFLFMSILIYLM 80
Cdd:MTH00157   1 MMTNLFSIFDPSTSFNLSLNWLSTFLGLLFIPSSFWLIPSRYNILWNKILKTLHKEFKTLLGPKNKGSTLIFISLFSFIL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910354549  81 SVNLLGLLPYTFTPTTQLSLNLALAIPLWITTILIGLRNQFSKSISHLVPEGTPTLLIPALIIIESVSLMIRPLTLAIRL 160
Cdd:MTH00157  81 FNNFLGLFPYIFTSTSHLSLTLSLALPLWLSFMLFGWINNTNHMFAHLVPQGTPPILMPFMVLIETISNLIRPGTLAVRL 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 910354549 161 TANLTAGHLLIHLISSGIMvliSTSPILSLLTLIILMLLTILEIAMAVIQAYVFILLLSLYLQE 224
Cdd:MTH00157 161 AANMIAGHLLLTLLGNTGP---SLSSMILSILILIQILLLILESAVAIIQSYVFSVLSTLYSSE 221
ATP_synt_6_or_A TIGR01131
ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be ...
 15-225 3.51e-42

ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be designated ATP synthase, F0 subunit A; eukaryotic (chloroplast and mitochondrial) forms should be designated ATP synthase, F0 subunit 6. The F1/F0 ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Individual subunits in each of these clusters are named differently in prokaryotes and in organelles e.g., mitochondria and chloroplast. The bacterial equivalent of subunit 6 is named subunit 'A'. It has been shown that proton is conducted though this subunit. Typically, deprotonation and reprotonation of the acidic amino acid side-chains are implicated in the process. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273458  Cd Length: 226  Bit Score: 142.35  E-value: 3.51e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910354549   15 LGMPTMPFVIIFPWLLISSLNQWNPNRIHSILNWLLAYLTKQIFLPLSSKISKWSFLFMSILIYLMSVNLLGLLPYTFTP 94
Cdd:TIGR01131  17 LLSLILLLSLLIFLISSSLSRWLIPSRWQNLMESIYEFVLSIVKSQIGGKKGKFFPLIFTLFLFILISNLLGLIPYSFTP 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910354549   95 TTQLSLNLALAIPLWITTILIGLRNQFSKSISHLVPEGTPTLLIPALIIIESVSLMIRPLTLAIRLTANLTAGHLLIHLI 174
Cdd:TIGR01131  97 TSHLSFTLGLALPLWLGLTISGFRKHPKGFLAHLVPSGTPLPLIPFLVIIETISYLARPISLSVRLFANISAGHLLLTLL 176

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 910354549  175 SSgiMVLISTSPILSLLTLIILMLLTILEIAMAVIQAYVFILLLSLYLQEN 225
Cdd:TIGR01131 177 SG--LLFSLMSSAIFALLLLILVALIILEIFVAFIQAYVFTLLTCLYLNDA 225
ATP6 MTH00176
ATP synthase F0 subunit 6; Provisional
 1-226 1.31e-40

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214449  Cd Length: 229  Bit Score: 138.63  E-value: 1.31e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910354549   1 MMMSIFNQFVLPTILGMPTMPFVIIFPW---LLISSLNQWNPNRIHSILNWLLAYLTKQIFLPLSSKISKWSFLFMSILI 77
Cdd:MTH00176   1 MLVDLFSSFDPPNKNIFSMISLSWITLLlflLLMPSSVWFCPSKLQVFMLMFSTFLPEMILRSNGSYILGSASIIISLFI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910354549  78 YLMSVNLLGLLPYTFTPTTQLSLNLALAIPLWITTILIGLRNQFSKSISHLVPEGTPTLLIPALIIIESVSLMIRPLTLA 157
Cdd:MTH00176  81 LVMSLNLSGLIPYVFTSTSHLVITLSLALPLWLGVILSGFINNFYSRLSHLVPQGTPPLLNPFLVLIELVSLLIRPLTLA 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 910354549 158 IRLTANLTAGHLLIHLISSGIMVLISTSPILSLLTLIILMLLTILEIAMAVIQAYVFILLLSLYLQENS 226
Cdd:MTH00176 161 VRLAANLSAGHLLLGLLGAAMWGLLPVSPLIGFLLLIVQILYFMFEIAVCMIQAYVFTLLLSLYLDEHP 229
ATP6 MTH00173
ATP synthase F0 subunit 6; Provisional
 1-224 7.48e-34

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214448  Cd Length: 231  Bit Score: 121.13  E-value: 7.48e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910354549   1 MMMSIFNQFVLPTILGMPTMPFVIIFP---WLLISSLNQWNPNRIHSILNWLLAYLTKQIFLPLSSKISKWSFLFMSILI 77
Cdd:MTH00173   1 MMVDLFSSFDDHNSSFSSLSFLMWLLSlmsLFFFSSSVWVSSSNLSSVFKLFVLTVSSQVTRSSGLNLGGFSLLLSSLFL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910354549  78 YLMSVNLLGLLPYTFTPTTQLSLNLALAIPLWITTILIGLRNQFSKSISHLVPEGTPTLLIPALIIIESVSLMIRPLTLA 157
Cdd:MTH00173  81 FLISLNLSGLLPFVFSVTSHLAFTFSLALPLWLSLILSGLFYNPSKSLAGLVPAGAPAGLNPFLVLIETVSILIRPLTLT 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 910354549 158 IRLTANLTAGHLLIHLISSGIMVLISTSPILSLLTLIILMLLTILE-IAMAVIQAYVFILLLSLYLQE 224
Cdd:MTH00173 161 VRLLANISAGHIVLTLIGNYLSSSLFSSSVVSLLLVLLIQVGYFIFeVAVMLIQAYIFTLLIKLYSDE 228
ATP-synt_Fo_a_6 cd00310
ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms ...
 67-223 3.38e-33

ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms are designated as ATP synthase, Fo complex, subunit a; eukaryotic (chloroplast and mitochondrial) forms are designated as ATP synthase, Fo complex, subunit 6. The F-ATP synthases (also called FoF1-ATPases) consist of two structural domains: F1 (factor one) complex containing the soluble catalytic core, and Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. F-ATP synthase has also been found in the archaea Methanosarcina acetivorans. F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis.


Pssm-ID: 349411 [Multi-domain]  Cd Length: 156  Bit Score: 117.12  E-value: 3.38e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910354549  67 KWSFLFMSILIYLMSVNLLGLLPYTFTPTTQLSLNLALAIPLWITTILIGLRNQFSKSISHLVPEGTPTLLIPALIIIES 146
Cdd:cd00310    3 KYLPLLGTLFLFILFSNLLGLIPYSFTPTSHLNVTLALALIVFLGVHILGIKKHGLGFFLHFLPPGTPLPLAPLMVPIEL 82

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 910354549 147 VSLMIRPLTLAIRLTANLTAGHLLIHLISSGIMVLIStspILSLLTLIILMLLTILEIAMAVIQAYVFILLLSLYLQ 223
Cdd:cd00310   83 ISELIRPLSLSVRLFANMFAGHLLLALLSGLVPSLLS---SVGLLPLLLPVALTLLELFVAFIQAYVFTLLTAVYIS 156
ATP6 MTH00005
ATP synthase F0 subunit 6; Provisional
 4-221 2.70e-29

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 164583  Cd Length: 231  Bit Score: 109.44  E-value: 2.70e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910354549   4 SIFNQFVLPTILGMPTMPFVIIfpwLLISSLNQWNPNRIHSILNWLLAYLTKQIFLPLSSKISKWSFLFMSILIYLMSVN 83
Cdd:MTH00005  12 ATNSLFNNLSSTAFWAFNFSII---LLLSSSFWITPNRLSSIMSPPKSTMHTQLSRTFGKHLKGFSSLISALFTMIILMN 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910354549  84 LLGLLPYTFTPTTQLSLNLALAIPLWITTILIGLRNQFSKSISHLVPEGTPTLLIPALIIIESVSLMIRPLTLAIRLTAN 163
Cdd:MTH00005  89 LSGLLPYVFSTSSHLIFTLTLGLPLWLSLIMSSVTFSPKKFAAHLLPGGAPDWLNPFLVLIETISILVRPITLSFRLAAN 168

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 910354549 164 LTAGHLLIHLISSGIMVLISTSPILSLLTLIILMLLTILEIAMAVIQAYVFILLLSLY 221
Cdd:MTH00005 169 MSAGHIVLSLIGIYAASALFSSISSTILLILTQMGYILFEVGICLIQAYIFCLLLSLY 226
ATP6 MTH00172
ATP synthase F0 subunit 6; Provisional
 1-222 2.23e-28

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214447  Cd Length: 232  Bit Score: 107.05  E-value: 2.23e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910354549   1 MMMSIFNQFVLPTILGMPT---MPFVIIFPWLLISSLNQWNPNRIHSILNWLLAYLTKQIFLPLSSKISKWSFLFMSILI 77
Cdd:MTH00172   1 MSSSYFDQFNIVWLIGLTNssiMMILVIIVVLLLFKGIKLIPKRWQSIIEIIYNHFHGVVKDNLGNEGLKYFPFIISLFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910354549  78 YLMSVNLLGLLPYTFTPTTQLSLNLALAIPLWITTILIGLRNQFSKSISHLVPEGTPTLLIPALIIIESVSLMIRPLTLA 157
Cdd:MTH00172  81 FIVFLNLLGLFPYVFTPTTHIVVTLGLSFSIIIGVTLAGFWRFKWDFFSILMPSGAPLGLAPLLVLIETVSYISRAISLG 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 910354549 158 IRLTANLTAGHLLIHLISSGIMVLISTSPILSLLTLIILMLLTILEIAMAVIQAYVFILLLSLYL 222
Cdd:MTH00172 161 VRLAANLSAGHLLFAILAGFGFNMLCASGFLSLFPLLIMVFITLLEIAVAVIQAYVFCLLTTIYL 225
ATP-synt_A pfam00119
ATP synthase A chain;
22-223 1.06e-26

ATP synthase A chain;


Pssm-ID: 459679 [Multi-domain]  Cd Length: 216  Bit Score: 102.18  E-value: 1.06e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910354549   22 FVIIFPWLLISSLNQWNPNRIHSILNWLLAYLTKQIFLPLSSKI-SKWSFLFMSILIYLMSVNLLGLL---PYTFTPTTQ 97
Cdd:pfam00119  10 ILLLFLLLATRKTKKLVPGRLQNFVEMLVEFVDNIVKDNIGKKKgRKFFPLLLTLFFFILVSNLLGLIpksPGGFTVTAD 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910354549   98 LSLNLALAIPLWITTILIGLRNQ-FSKSISHLVPEGTPTLLIPALIIIESVSLMIRPLTLAIRLTANLTAGHLLIHLISS 176
Cdd:pfam00119  90 INVTLALALIVFLLVHYYGIKKHgLGGYFKKLFVPPVPLPLVPLLLPIEIISEFARPVSLSLRLFGNMLAGHLLLLLLAG 169

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 910354549  177 GIMVLISTSPILSLLTLIILMLLTILEIAMAVIQAYVFILLLSLYLQ 223
Cdd:pfam00119 170 LIFALLSAGFLLGVIPPLLGVAWTLFELLVAFIQAYVFTMLTAVYIS 216
ATP6 MTH00175
ATP synthase F0 subunit 6; Provisional
 20-222 6.69e-22

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177228  Cd Length: 244  Bit Score: 90.07  E-value: 6.69e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910354549  20 MPFVIIFPWLLISSlNQWNPNRIHSILNWLLAYLTKQIFLPLSSKISKWSFLFMSILIYLMSVNLLGLLPYTFTPTTQLS 99
Cdd:MTH00175  35 MVLAVIIFWLLLKG-DKLIPNRWQSIMELIYLNIRSVVHDNLGKSGQKYFPFILSLFLFIAILNILGLFPYVFTPTAHII 113

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910354549 100 LNLALAIPLWITTILIGLRNQFSKSISHLVPEGTPTLLIPALIIIESVSLMIRPLTLAIRLTANLTAGHLLIHLISS-GI 178
Cdd:MTH00175 114 ITFGLSLSIIIAVTLLGFLTFKWNFLSILMPGGAPLVLAPFLVLIETLSYLIRAISLGVRLAANISAGHLLFAILSGfAF 193

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 910354549 179 MVLISTSPILSLLTLIILMLLTILEIAMAVIQAYVFILLLSLYL 222
Cdd:MTH00175 194 NMLSNGLIILSLFPMLIMIFITLLEMAVAVIQAYVFCLLTTIYL 237
AtpB COG0356
FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP ...
 19-224 1.05e-19

FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit a is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440125 [Multi-domain]  Cd Length: 212  Bit Score: 83.58  E-value: 1.05e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910354549  19 TMPFVIIFPWLLISSLnQWNPNRIHSILNWLLAYLTKQIFLPLSSKISKWSFLFMSILIYLMSVNLLGLLPYTFTPTTQL 98
Cdd:COG0356    9 AMLLLLLLFLLATRKL-KLVPGGLQNFVEMLVEFVRNQVKDTIGKKGRKFAPLLLTLFLFILVSNLLGLIPGLFPPTADI 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910354549  99 SLNLALAIPLWITTILIGLRNQ-FSKSISHLVPEGTPtLLIPALIIIESVSLMIRPLTLAIRLTANLTAGHLLIHLISSG 177
Cdd:COG0356   88 NVTLALALIVFVLVHYYGIKKKgLGGYLKHLFFPPFP-WLAPLMLPIEIISELARPLSLSLRLFGNMFAGHIILLLLAGL 166

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*..
gi 910354549 178 IMVLISTSPILSLLTLIILMLLTileiaMAVIQAYVFILLLSLYLQE 224
Cdd:COG0356  167 APFLLLGVLSLLLPVAWTAFELL-----VGFLQAYIFTMLTAVYISL 208
PRK05815 PRK05815
F0F1 ATP synthase subunit A; Validated
 6-224 4.39e-16

F0F1 ATP synthase subunit A; Validated


Pssm-ID: 235617  Cd Length: 227  Bit Score: 74.06  E-value: 4.39e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910354549   6 FNQFVLPTILGMptmpFVIIFPWLLISSLNQWNPNRIHSILNWLLAYLTKQIFLPLSSKISKWSFLFMSILIYLMSVNLL 85
Cdd:PRK05815  14 FDSLLLSVLLGV----LILLLFALVATRKLSGVPGGLQNFVEMIVEFVRGQVKDNIGGKGKKFAPLAFTLFLFILLMNLL 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910354549  86 GLLP-YTFTPTTQLSLNLALAIPLWITTILIGLRNQ-FSKSISHLVPEGTPtLLIPaliiIESVSLMIRPLTLAIRLTAN 163
Cdd:PRK05815  90 GLIPyLLFPPTADINVTLALALIVFVLVIYYGIKKKgLGGYLKEFYLQPHP-LLLP----IEIISEFSRPISLSLRLFGN 164

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 910354549 164 LTAGHLLIHLISSgimvLISTSPILSLLTLIILMLLTILEIAMAVIQAYVFILLLSLYLQE 224
Cdd:PRK05815 165 MLAGELILALIAL----LGGAGLLLALAPLILPVAWTIFEIFVGTLQAYIFMMLTIVYISM 221
ATP6 MTH00174
ATP synthase F0 subunit 6; Provisional
 39-224 1.33e-15

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 133799  Cd Length: 252  Bit Score: 73.44  E-value: 1.33e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910354549  39 PNRIHSILNWLLAYLTKQIFLPLSSKISKWSFLFMSILIYLMSVNLLGLLPYTFTPTTQLSLNLALAIPLWITTILIGLR 118
Cdd:MTH00174  61 PNRILVGLELIYSHFYTVLKDNLGNKGGNYLAFVLSLFILILFGNGLGLFPYVFTPTVHMVITLGLSFAIIVGTTLAGLI 140

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910354549 119 NQFSKSISHLVPEGTPTLLIPALIIIESVSLMIRPLTLAIRLTANLTAGHLLIHLISSGIMVLISTSPIL-SLLTLIILM 197
Cdd:MTH00174 141 TFRFNFFSILMPQGAPLALAPLLTIIETLSYISRAISLGVRLAANISSGHLLFSIIASFAWKMINTGILIgSFVPFAILI 220

                        170       180
                 ....*....|....*....|....*..
gi 910354549 198 LLTILEIAMAVIQAYVFILLLSLYLQE 224
Cdd:MTH00174 221 FVTILEMAVAIIQAYVFTLLTIVYLRD 247
PRK13419 PRK13419
F0F1 ATP synthase subunit A; Provisional
 72-222 1.82e-10

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237381  Cd Length: 342  Bit Score: 59.37  E-value: 1.82e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910354549  72 FMSILIylmsVNLLGLLPYTFTPTTQLSLNLALAIPLWITTILIGLRNQFSKS-ISHLVPeGTPTLLIPALIIIESVSLM 150
Cdd:PRK13419 178 FFFILV----CNLLGLVPYGATATGNINVTLTLAVFTFFITQYAAIKAHGIKGyLAHLTG-GTHWSLWIIMIPIEFIGLF 252

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 910354549 151 IRPLTLAIRLTANLTAGHLLIhLISSGIMVLISTSPILSLLTLIILMLLTILEIAMAVIQAYVFILLLSLYL 222
Cdd:PRK13419 253 TKPFALTVRLFANMTAGHIVI-LSLIFISFILKSYIVAVAVSVPFAIFIYLLELFVAFLQAYIFTMLSALFI 323
ATP6 MTH00087
ATP synthase F0 subunit 6; Provisional
 56-224 3.08e-09

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177152  Cd Length: 195  Bit Score: 54.60  E-value: 3.08e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910354549  56 QIFLPLSSKISKWSFLFMSILiylmsvNLLGLLPYTFTPTTQLSLNLALAIPLWITTILIGLRNQFSksISHLVPEGTPT 135
Cdd:MTH00087  45 SNKLPLSSVISFFTFIVLLLF------CFGGLFPYSFSPCGMVEFTFLYALVAWLSTFLSFLSKSEK--FSVYLSKGSDS 116

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910354549 136 LLIP-ALIIIESVSLMIRPLTLAIRLTANLTAGHLLIHLISSgimvlistspiLSLLTLIILMLLTILEIAMAVIQAYVF 214
Cdd:MTH00087 117 FLKTfSMLFVEIVSELSRPLALTLRLTVNLMVGHLISSLLNF-----------LGEKYVWLSILAIMMECFVAFIQSYIF 185

                        170
                 ....*....|
gi 910354549 215 ILLLSLYLQE 224
Cdd:MTH00087 186 SRLIYLYLNE 195
PRK13417 PRK13417
F0F1 ATP synthase subunit A; Provisional
 93-222 1.60e-07

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237380  Cd Length: 352  Bit Score: 51.04  E-value: 1.60e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910354549  93 TPTTQLSLNLALAIPLWITTILIGLRNQFSKSISHLVPEGTPTLLIPALIIIE-SVSLMIRPLTLAIRLTANLTAGHLLI 171
Cdd:PRK13417 217 TVTGDISVTMTLALLTMFLIYGAGFSYQGPKFIWHSVPNGVPLLLYPIMWPLEfIVSPMAKTFALTVRLLANMTAGHVII 296

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 910354549 172 HLISSgiMVLISTSPILSLLTLIILMLLTILEIAMAVIQAYVFILLLSLYL 222
Cdd:PRK13417 297 LALMG--FIFQFQSWGIVPVSVIGSGLIYVLEIFVAFLQAYIFVLLTSLFV 345
ATP6 MTH00050
ATP synthase F0 subunit 6; Validated
 64-167 8.95e-06

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177125  Cd Length: 170  Bit Score: 44.49  E-value: 8.95e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910354549  64 KISKWSFLFMSILIYLMSVNLLGLLPYTFTPTTQLSLNLALAIPLWITTILIGLRNQFSKSISHLVPEGTPTLLIPALII 143
Cdd:MTH00050  18 LGGSVSYYYSVVLFIVLFLFLLYRLPYIYSPFLFVVFLFVVVFPLFISLFLSRVFDSLNEFFSSFVPVGTPLYICPFVCI 97

                         90       100
                 ....*....|....*....|....
gi 910354549 144 IESVSLMIRPLTLAIRLTANLTAG 167
Cdd:MTH00050  98 AETISYIIRPVVLILRPFINISLG 121
PRK13421 PRK13421
F0F1 ATP synthase subunit A; Provisional
 11-182 3.75e-03

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237383  Cd Length: 223  Bit Score: 37.37  E-value: 3.75e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910354549  11 LPTILGMPTMPFVIIFPWLLISSLNQwNPNRIHSILNWLLAYLTKQIFLPLSSKISKWSFLFMSILIYLMSVNLLGLLPY 90
Cdd:PRK13421  21 APVVVTWAIMAVLAAGSALATRRLSL-APGRLQSVLELVVTTIDAQIRDTMQTDPAPYRALIGTLFLFVLVANWSSLVPG 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910354549  91 TFTPTTQLSLNLALAIPLWITTILIGLRNQfsKSISHLVPEGTPTLLIPALIIIESVSlmiRPLTLAIRLTANLTAGHLL 170
Cdd:PRK13421 100 VEPPTAHLETDAALALIVFLATIYYGVRAR--GVRGYLATFAEPTWVMIPLNLVEQLT---RTFSLIVRLFGNVMSGVFV 174

                        170
                 ....*....|....
gi 910354549 171 IHLISS--GIMVLI 182
Cdd:PRK13421 175 IGIVLSlaGLLVPI 188
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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