|
Name |
Accession |
Description |
Interval |
E-value |
| secD |
PRK05812 |
preprotein translocase subunit SecD; Reviewed |
8-619 |
0e+00 |
|
preprotein translocase subunit SecD; Reviewed
Pssm-ID: 235615 [Multi-domain] Cd Length: 462 Bit Score: 652.29 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 8 WKYLLVLAVLAVGILYATPNLYGrdpaiqvsgtkgtnadlsvldqvnktlkdnsltvkstalengqvlirftnvedqlka 87
Cdd:PRK05812 1 WKYLLILLVLLIGLLYALPNLRG--------------------------------------------------------- 23
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 88 qdllrntlsddyisaiNMSPAQPDWLKNLGANPMKLGLDLSGGVHFTMEVDMATAMDKAFEQMEQDYKSDLREEKLRYRS 167
Cdd:PRK05812 24 ----------------ALAPATPEWLPALGAKPMKLGLDLRGGVHFLLEVDMDDALKKRLESLADDLRSLLREKKIRYGG 87
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 168 IrrvansdriQVVMRSDEDRDAAERFLKKrypgnlfindssnglafFSTLSEPKIKELRDYAIKQNETIIRNRINQLGVA 247
Cdd:PRK05812 88 V---------EITFRDAEDRDKAIALLRK-----------------LSSLTEAELKEITEEALEQAIEIIRNRVNELGVA 141
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 248 EPNVQRQGAERIIVQLPGVQDTARAKEILGATATLEFREVdqnadaraaaqgrvppgsevimhqagypvvvkkRVVLEGS 327
Cdd:PRK05812 142 EPVIQRQGADRIVVELPGVQDTARAKEILGKTATLEFRLV---------------------------------PVILTGD 188
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 328 HITGAQSGLDEYQRPKVSINLDSKGGAKMSAFTKRAIGKPMATVFIEykpsgkvdkngkalppikveEVINVATIQARL- 406
Cdd:PRK05812 189 DITDASASFDQQGQPVVNITLDSEGAKKFADITKANIGKRMAIVLDG--------------------EVISAPVIQSAIt 248
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 407 NSSFQITGINTPAEAHNLSLLLRAGALVAPIQIVEERTVGPSLGQENIQAGMTAVVLGFAFVLAFMLMYYKGFGLVANLA 486
Cdd:PRK05812 249 GGSAQITGNFTAEEARDLALLLRAGALPAPLEIVEERTIGPSLGADSIRAGLIAGLIGLALVLLFMILYYRLFGLIANIA 328
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 487 LAANLVMIVGVMSMIpGATLTLPGIAGIVLTVGMAVDANVLIFERIREELGEGRSPQQAVHHGYDSAFSTIFDANITTLI 566
Cdd:PRK05812 329 LVANLVLILAVLSLL-GATLTLPGIAGIVLTIGMAVDANVLIFERIREELREGRSLRSAIEAGFKRAFSTILDSNITTLI 407
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....
gi 908743259 567 AAVILFSVGTGPIAGFAVTLAIGILTSMFTAIVGTRAVINAVIG-GKRINSLSI 619
Cdd:PRK05812 408 AAIILYALGTGPVKGFAVTLGIGILTSMFTAITVTRALVNLLYGrRKRLKKLSI 461
|
|
| secD |
PRK12933 |
protein translocase subunit SecD; |
2-610 |
0e+00 |
|
protein translocase subunit SecD;
Pssm-ID: 183831 [Multi-domain] Cd Length: 604 Bit Score: 632.49 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 2 LNKYPMWKYLLVLAVLAVGILYATPNLYGRDPAIQVSGTKGTNadLSVLdQVNKTLKDNSLTVKSTALENGQVLIRFTNV 81
Cdd:PRK12933 10 LNHYSAWKYVVLIVTIIILLLSAIPTWYGEDAAVQVSAKAGLL--LNVV-ELRQLLQAQGINVKRIDQKEGKTLIVLDDD 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 82 EDQLKAQDLLRNTLSDDYISAINMSPAQPDWLKNLGANPMKLGLDLSGGVHFTMEVDMATAMDKAFEQMEQDYKSDLREE 161
Cdd:PRK12933 87 SQQSQAKTLLSSMVKEPKELTLSLASAAPKWLQNMGFSPIKLGLDLRGGVQFLLDVDVDPVYQEQRDALVDSVRQFLREQ 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 162 KLRYRSIRRVAnSDRIQVVMRSDEDRDAAERFLKKRYPGNLFINDSSNGLAFfsTLSEPKIKELRDYAIKQNETIIRNRI 241
Cdd:PRK12933 167 RIRGVSVRLDD-SDQLAVTTPDNDARSAVRQFIQQNYPGWQVTNSDDRGLQL--KLSQQEKTKFRNLTVQQNLQIMRSRI 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 242 NQLGVAEPNVQRQGAERIIVQLPGVQDTARAKEILGATATLEFREVDQNADARAaaqgrvppgsEVIMHQAGYPVVVKKR 321
Cdd:PRK12933 244 EELGITEALVQRQGEHRIRIELPGVQDPAAAKNVIGATASLAFYEVKESGSVNA----------KVLKDKNGRPVYVARR 313
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 322 VVLEGSHITGAQSGLDEYQRPKVSINLDSKGGAKMSAFTKRAIGKPMATVFIEYKPsgkvDKNGKAlppIKVEEVINVAT 401
Cdd:PRK12933 314 PVLGGEHIVDARASLGEMGMAEVNISLDRAGGKKMSDFSRDNIGKPMATSYSEYSR----DEQGKT---KQSEEVISVAT 386
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 402 IQARLNSSFQITGINTPAEAHNLSLLLRAGALVAPIQIVEERTVGPSLGQENIQAGMTAVVLGFAFVLAFMLMYYKGFGL 481
Cdd:PRK12933 387 IQSQLGDRFRITGAGSYQEAQQLALLLRAGSLTAPVTIVEERTIGPSLGAENIENGFAALALGMGITLLFMALWYRRLGW 466
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 482 VANLALAANLVMIVGVMSMIPGATLTLPGIAGIVLTVGMAVDANVLIFERIREELGEGRSPQQAVHHGYDSAFSTIFDAN 561
Cdd:PRK12933 467 VANVALIANMVCLFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKEGRSFAQAIDTGFDSAFSTIFDAN 546
|
570 580 590 600
....*....|....*....|....*....|....*....|....*....
gi 908743259 562 ITTLIAAVILFSVGTGPIAGFAVTLAIGILTSMFTAIVGTRAVINAVIG 610
Cdd:PRK12933 547 FTTMITAVVLYSIGNGPIQGFALTLGLGLLTSMFTGIFASRALINLVYG 595
|
|
| SecD |
COG0342 |
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular ... |
85-619 |
0e+00 |
|
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440111 [Multi-domain] Cd Length: 434 Bit Score: 576.68 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 85 LKAQDLLRNTLSDDYISAINMspaqpdWLKNLGANPMKLGLDLSGGVHFTMEVDMATAMDKafeqmeqdyksdlreeklr 164
Cdd:COG0342 1 MKAKFLLWRLLLLLLVVALSL------VAPNGPAKPIKLGLDLQGGVHLLLEVDTDAALDE------------------- 55
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 165 yrsirrvansdriqvvmrsdedrdaaerflkkrypgnlfindssnglaffstlSEPKIKELRDYAIKQNETIIRNRINQL 244
Cdd:COG0342 56 -----------------------------------------------------DGDGIREVTEEALDQAIEILRNRVNEL 82
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 245 GVAEPNVQRQGAERIIVQLPGVQDTARAKEILGATATLEFREVDQNADARAAaqgrVPPGSEVIMHQAGYPVVVKKRVVL 324
Cdd:COG0342 83 GVSEPVIQRQGDDRIVVELPGVQDPAEAKELLGKTAKLEFRLVDDSADAQAA----VPAGSELLPCRDGQPYLLLGPVVL 158
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 325 EGSHITGAQSGLD-EYQRPKVSINLDSKGGAKMSAFTKRAIGKPMATVFIEykpsgkvdkngkalppikveEVINVATIQ 403
Cdd:COG0342 159 TGDDLTDASAGFDqQTGQPVVSFTLDSEGAKKFADATRENVGKPLAIVLDG--------------------EVISAPVIQ 218
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 404 ARLNS-SFQITGINTPAEAHNLSLLLRAGALVAPIQIVEERTVGPSLGQENIQAGMTAVVLGFAFVLAFMLMYYKGFGLV 482
Cdd:COG0342 219 EPITGgSAQITGSFTVEEAQDLALLLRAGALPAPLEIVEERTVGPTLGADSIEKGLIAGLIGLLLVALFMLLYYRLPGLV 298
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 483 ANLALAANLVMIVGVMSMIpGATLTLPGIAGIVLTVGMAVDANVLIFERIREELGEGRSPQQAVHHGYDSAFSTIFDANI 562
Cdd:COG0342 299 ANIALALNVVLLLGVLSLL-GATLTLPGIAGIILTIGMAVDANVLIFERIREELRAGRSLRAAIEAGFKRAFSTILDANV 377
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*..
gi 908743259 563 TTLIAAVILFSVGTGPIAGFAVTLAIGILTSMFTAIVGTRAVINAVIGGKRINSLSI 619
Cdd:COG0342 378 TTLIAAVVLFVLGTGPVKGFAVTLILGILISMFTAVPVTRPLLNLLLGRRRLKKLGI 434
|
|
| secD |
TIGR01129 |
protein-export membrane protein SecD; Members of this family are highly variable in length ... |
123-605 |
3.54e-165 |
|
protein-export membrane protein SecD; Members of this family are highly variable in length immediately after the well-conserved motif LGLGLXGG at the amino-terminal end of this model. Archaeal homologs are not included in the seed and score between the trusted and noise cutoffs. SecD from Mycobacterium tuberculosis has a long Pro-rich insert. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273456 [Multi-domain] Cd Length: 397 Bit Score: 477.16 E-value: 3.54e-165
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 123 LGLDLSGGVHFTMEVDMATAMDKafeqmeqdyksdlreeklryrsirrvansdriqvvmrsdedrdaaerflkkrypgnl 202
Cdd:TIGR01129 1 LGLDLRGGARVLLEVDMSTAVVL--------------------------------------------------------- 23
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 203 findssnglaffsTLSEPKIKELRDYAIKQNETIIRNRINQLGVAEPNVQRQGAERIIVQLPGVQDTARAKEILGATATL 282
Cdd:TIGR01129 24 -------------KLSEAEVNAIRKDALEQVITILRNRVNALGVSEPVVQRQGKDRIVVELPGVTDTSRAKDILGGTATL 90
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 283 EFREVDQNA-DARAAAQGRVPPGSEVIMHQAGYP--VVVKKRVVLEGSHITGAQSGLDEY-QRPKVSINLDSKGGAKMSA 358
Cdd:TIGR01129 91 EFRLVDDEStSPDDALAGNVPAGSELLDSRSGDPkyYLLKKSPVLTGDHITDATSSVDQRsGQPVVSFSLDSEGARIFGD 170
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 359 FTKRAIGKPMATVFIEYkpsgkvdkngkalppikveeVINVATIQARLN-SSFQITGINTPAEAHNLSLLLRAGALVAPI 437
Cdd:TIGR01129 171 FTQANIGKRLAIVLDNK--------------------VVSAPTIQEAITgGSGQITGNFTAEEANDLALVLRSGALPAPL 230
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 438 QIVEERTVGPSLGQENIQAGMTAVVLGFAFVLAFMLMYYKGFGLVANLALAANLVMIVGVMSMIpGATLTLPGIAGIVLT 517
Cdd:TIGR01129 231 QILEERTIGPSLGADSIEAGIKAGLIGLVLVLVFMILYYRLFGLIAAIALVINIVLILAILSAF-GATLTLPGIAGLILT 309
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 518 VGMAVDANVLIFERIREELGEGRSPQQAVHHGYDSAFSTIFDANITTLIAAVILFSVGTGPIAGFAVTLAIGILTSMFTA 597
Cdd:TIGR01129 310 IGMAVDANVLIYERIKEELRLGKSVRQAIEAGFERAFSTIFDANITTLIAALILYVFGTGPVKGFAVTLAIGIIASLFTA 389
|
....*...
gi 908743259 598 IVGTRAVI 605
Cdd:TIGR01129 390 LVFTRLLL 397
|
|
| PRK13024 |
PRK13024 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
221-602 |
2.50e-137 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 237276 [Multi-domain] Cd Length: 755 Bit Score: 418.48 E-value: 2.50e-137
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 221 KIKELRDYAIKQNETIIRNRINQLGVAEPNVQRQGAERIIVQLPGVQDTARAKEILGATATLEFREVDQNADaraaaqgr 300
Cdd:PRK13024 52 KGKKADREALDSTVEVLRNRIDGLGVSEPNIQREGNNRIRVELPGVQDPERARELLGSTAKLTFRDVTDPPP-------- 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 301 VPPGSEVIMHQAGYPVVVKKRVVLEGSHITGAQSGLDEYQ--RPKVSINLDSKGGAKMSAFTKRAI-----GKPMATVfi 373
Cdd:PRK13024 124 PGVGGPVVGPDEGKDTAVLNPVLLSGDDLTDAGAKFDQDQtnRPSVSLKLKSEGAKKWAKVTEKNSkkgppNNRIAIV-- 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 374 eykpsgkVDKngkalppikveEVINVATI-QARLNSSFQITGINTPAEAHNLSLLLRAGALVAPIQIVEERTVGPSLGQE 452
Cdd:PRK13024 202 -------LDP-----------KVISAPTVnQPINGGSVQISGNFTVEEAKDLANLLNAGALPAPLKIIESRSVGPTLGQD 263
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 453 NIQAGMTAVVLGFAFVLAFMLMYYKGFGLVANLALAANLVMIVGVMSMIpGATLTLPGIAGIVLTVGMAVDANVLIFERI 532
Cdd:PRK13024 264 AIDAGIIAGIIGFALIFLFMLVYYGLPGLIANIALLLYIFLTLGALSSL-GAVLTLPGIAGLVLGIGMAVDANVLIFERI 342
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 533 REELGEGRSPQQAVHHGYDSAFSTIFDANITTLIAAVILFSVGTGPIAGFAVTLAIGILTSMFTAIVGTR 602
Cdd:PRK13024 343 KEELRKGKSLKKAFKKGFKNAFSTILDSNITTLIAAAILFFFGTGPVKGFATTLIIGILASLFTAVFLTR 412
|
|
| PRK14726 |
PRK14726 |
protein translocase subunit SecDF; |
110-605 |
7.65e-126 |
|
protein translocase subunit SecDF;
Pssm-ID: 237805 [Multi-domain] Cd Length: 855 Bit Score: 391.39 E-value: 7.65e-126
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 110 PDWLKNlgaNPMKLGLDLSGGVHFTMEVDMATAMDKAFEQMEQDYKSDLREEKLRYRSIrrVANSDRIQVVMRSDEDRDA 189
Cdd:PRK14726 37 PSWLPH---RQVTLGLDLQGGSHIVLKVERSDIVKDRLEETVANIRNALRDAGIRYTGL--TGNGQTVQVRITDPAQTQA 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 190 AERFLKK----RYPGNLF--------INDSSNGLAFFsTLSEPKIKELRDYAIKQNETIIRNRINQLGVAEPNVQRQGAE 257
Cdd:PRK14726 112 AVDALKPltapVSAGGLGgssiqeltLQEGGEGQLRL-QLTDAGIDYRVSSALTQSIEVVRRRVAELGTTEPLIRRQGDD 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 258 RIIVQLPGVQDTARAKEILGATATLEFREVDQNADARAAAQGRVPPGSEVIMHQAGYPV--VVKKRVVLEGSHITGAQSG 335
Cdd:PRK14726 191 RIVVQVPGLVDPQRLKNLLNQPAKLSFRLVDSSMPAQEALNGRPPATSEVLYSLDDPPVpyLVERRAFVSGENLVDAQPV 270
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 336 LD-EYQRPKVSINLDSKGGAKMSAFTKRAIGKPMATVFieykpsgkvdkNGKALPPIKVEEVInvatiqarLNSSFQITG 414
Cdd:PRK14726 271 FDpQTNEPVVTFRLDAEGTQRFAQATQQNVGKHFAIVL-----------DGQVISAPVIDEAI--------TGGEGRISG 331
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 415 INTPAEAHNLSLLLRAGALVAPIQIVEERTVGPSLGQENIQAGMTAVVLGFAFVLAFMLMYYKGFGLVANLALAANLVMI 494
Cdd:PRK14726 332 NFSEQGANDLAVLLRAGALPATLTVVEERTVGPGLGADSIAAGLVAGLIAAILVAALMIGFYGFLGVIAVIALIVNVVLI 411
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 495 VGVMSMIpGATLTLPGIAGIVLTVGMAVDANVLIFERIREELGEGRSPQQAVHHGYDSAFSTIFDANITTLIAAVILFSV 574
Cdd:PRK14726 412 IAVLSLL-GATLTLPGIAGIVLTIGMAVDSNVLIYERIREEEKTGHSLIQALDRGFSRALATIVDANVTILIAAVILFFL 490
|
490 500 510
....*....|....*....|....*....|.
gi 908743259 575 GTGPIAGFAVTLAIGILTSMFTAIVGTRAVI 605
Cdd:PRK14726 491 GSGAVRGFAVTLAVGILTTVFTAFTLTRSLV 521
|
|
| PRK13023 |
PRK13023 |
protein translocase subunit SecDF; |
230-605 |
3.69e-60 |
|
protein translocase subunit SecDF;
Pssm-ID: 171842 [Multi-domain] Cd Length: 758 Bit Score: 214.10 E-value: 3.69e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 230 IKQNETIIRNRINQLGVAEPNVQRQGAERIIVQLPGVQDTARAKEILGATATLEFREVDQNADARAAAQGRVPPGSEVIM 309
Cdd:PRK13023 69 LETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRGTPPADSEIVY 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 310 HQAGYPV--VVKKRVVLEGSHITGAQSGL-DEYQRPKVSINLDSKGGAKMSAFTKRAIGKPMATVfieykpsgkVDKngk 386
Cdd:PRK13023 149 SFDDPPVgyLLKKTPILTGHDITDAKASIsADDGQPVITLTLDDNGRRRLADLTAQGNENSFAIV---------VDN--- 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 387 alppikveEVINVATIQARLNSS-FQITGINTPAEAHNLSLLLRAGALVAPIQIVEERTVGPSLGQENIQAGMTAVVLGF 465
Cdd:PRK13023 217 --------QVVSAPTVSGPLDTSeLQIEGAFDLQAANNMAVVLRSGALPQAVTVLEERTIASALGEDYASAAVLAALLAA 288
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 466 AFVLAFMLMYYKGFGLVANLALAANLVMIVGVMSMIpGATLTLPGIAGIVLTVGMAVDANVLIFERIREELGEGRSPQQA 545
Cdd:PRK13023 289 LVVGLFMVLSYGILGVIALVALVVNIIILTAVLSLI-GASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQA 367
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 546 VHHGYDSAFSTIFDANITTLIAAVILFSVGTGPIAGFAVTLAIGILTSMFTAIVGTRAVI 605
Cdd:PRK13023 368 MESGFYRALSTIVDANLTTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLI 427
|
|
| 2A0604s01 |
TIGR00916 |
protein-export membrane protein, SecD/SecF family; The SecA,SecB,SecD,SecE,SecF,SecG and SecY ... |
443-598 |
2.50e-54 |
|
protein-export membrane protein, SecD/SecF family; The SecA,SecB,SecD,SecE,SecF,SecG and SecY proteins form the protein translocation appartus in prokaryotes. This family is specific for the SecD and SecF proteins. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273336 [Multi-domain] Cd Length: 192 Bit Score: 183.23 E-value: 2.50e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 443 RTVGPSLGQENIQAGMTAVVLGFAFVLAFMLMYYKGFGLVANLALAAN-LVMIVGVMSMIpGATLTLPGIAGIVLTVGMA 521
Cdd:TIGR00916 35 GTVGPTLGGELIKAGIIALLIGLVLVLLYMLLRYEWRGAIAAIAALVHdVILILGVLSLF-GATLTLPGIAGLLTIIGYS 113
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 908743259 522 VDANVLIFERIREEL--GEGRSPQQAVHHGYDSAFSTIFDANITTLIAAVILFSVGTGPIAGFAVTLAIGILTSMFTAI 598
Cdd:TIGR00916 114 VDDTVVIFDRIREELrkYKGRTFREAINLGINQTLSRIIDTNVTTLLAVLALYVFGGGAIKGFALTLGIGVIAGTYSSI 192
|
|
| PRK12911 |
PRK12911 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
240-602 |
5.96e-49 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 171815 [Multi-domain] Cd Length: 1403 Bit Score: 184.29 E-value: 5.96e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 240 RINQLGVAEPNVQRQGaERIIVQLPGVQDTARAkEILGaTATLEFREVDQNADARAA-----------------AQGRVP 302
Cdd:PRK12911 618 RLNKLGVSEVEMRREG-DHIHLSVPGSAGISSA-EILG-TSKMSFHVVNEQFSSYSAlryevqrfldylwftarSQDKTS 694
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 303 PgsEVIMHQAGY---------PVVVKKRVV-LEGSHITGAQSGLDeyqrpKVSINLDSKggAKMSAFTKRAIGK--PMAT 370
Cdd:PRK12911 695 P--EAINRLASAlfngdegsaPASVREAVTkLKEEGLAFSKSGLE-----GGSASLDTT--YSMIAIEKDSEEKanPLMI 765
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 371 VFIEYKPSGKVDKN-------------------------GKALPPIK---------VEEVINVAT--------------- 401
Cdd:PRK12911 766 VFRNYALDGASLKNirpefavgegyvlnfsvkdtatfsdARELSPTEsfhawtsayCQEGVSGTKngqfsggrgwrmavv 845
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 402 ----------IQARLNSSFQITGINTPAEAHNLSLLLRAGALVAPIQIVEERTVGPSLGQENIQAGMTAVVLGFAFVLAF 471
Cdd:PRK12911 846 ldgyvvsdpvLNVPLKDHASVSGKFSHREVHRLATDLKSGAMSFVPEVLSEEVISPELGKSQRTQGIISVCLGLAVLIVL 925
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 472 MLMYYKGFGLVANLALAANLVMIVGVMSMIpGATLTLPGIAGIVLTVGMAVDANVLIFERIREELGEGRSPQQAVHHGYD 551
Cdd:PRK12911 926 MSVYYRFGGVIASGAVLLNLLLIWAALQYL-DAPLTLSGLAGIVLAMGMAVDANVLVFERIREEYLLSRSLSESVEAGYK 1004
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|.
gi 908743259 552 SAFSTIFDANITTLIAAVILFSVGTGPIAGFAVTLAIGILTSMFTAIVGTR 602
Cdd:PRK12911 1005 KAFSAIFDSNLTTILASALLLMLDTGPIKGFALTLIIGIFSSMFTALFMTK 1055
|
|
| SecD-TM1 |
pfam13721 |
SecD export protein N-terminal TM region; This domain appears to be the fist transmembrane ... |
2-103 |
8.65e-43 |
|
SecD export protein N-terminal TM region; This domain appears to be the fist transmembrane region of the SecD export protein. SecD is directly involved in protein secretion and important for the release of proteins that have been translocated across the cytoplasmic membrane.
Pssm-ID: 463968 [Multi-domain] Cd Length: 103 Bit Score: 148.82 E-value: 8.65e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 2 LNKYPMWKYLLVLAVLAVGILYATPNLYGRDPAIQVSGTKGT-NADLSVLDQVNKTLKDNSLTVKSTALENGQVLIRFTN 80
Cdd:pfam13721 1 MNRYPLWKYLLILVVLLIGLLYALPNLYGEDPAVQISAARGGaKVDEATLDRVEQALKAAGIPVKSIELEGDSLLVRFDS 80
|
90 100
....*....|....*....|...
gi 908743259 81 VEDQLKAQDLLRNTLSDDYISAI 103
Cdd:pfam13721 81 TDDQLKAKDVLQRALGDDYVVAL 103
|
|
| secD |
PRK08343 |
preprotein translocase subunit SecD; Reviewed |
235-591 |
1.41e-27 |
|
preprotein translocase subunit SecD; Reviewed
Pssm-ID: 236245 [Multi-domain] Cd Length: 417 Bit Score: 115.36 E-value: 1.41e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 235 TIIRNRINQLGVAEPNVQRQGAERIIVQLPGVqDTARAKEILGAtatlefrevdqnadaraaaQGRVppgsEVIMHQAGY 314
Cdd:PRK08343 70 EILESRLNALGLKDIKVYPVGDQYIVVEVPGV-DADTAKEIIEK-------------------QGVF----EARIQTPGN 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 315 pvvvKKRVVLEGSHIT--GAQSGLDEYQRPKVSINLDSKGGAKmsaFTKRAIGKPMATVFIEYKPSGKVDKNGKALPPIK 392
Cdd:PRK08343 126 ----NNETVLTGDDIEsvGSPSQDPSGGAWGVPFTLSEDGAEK---FAEVAKGKGATDDPSGHPLDMYLDGELIYAAPLS 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 393 VEEVINVATIQARLNSSFQITGINTPAEAHNLSLLLRAGALVAPIQIVEERTVGPSLGQENIQAGMTAVVLGFAFVLAFM 472
Cdd:PRK08343 199 PDLASGLASGPVVITVGSTGTTEEAKEEAKELYIHLRSGALPVKLDIEGSGSVSPSLGEQFKKGSLIAGLLALLAVALVV 278
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 473 LMYYKGFGLVANLAL--AANLVMIVGVMSMIpGATLTLPGIAGIVLTVGMAVDANVLIFErirEELGEGRSPQQAVhhgY 550
Cdd:PRK08343 279 FLRYREPRIALPMVItsLSEVIIILGFAALI-GWQLDLASIAGIIAVIGTGVDDLIIITD---EVLHEGKVPSRKV---F 351
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 908743259 551 DS----AFSTIFDANITTLIAAVILFSVGTGPIAGFAVTLAIGIL 591
Cdd:PRK08343 352 LSrikrAFFIIFAAAATTIAAMSPLAVMGLGDLKGFAITTILGVL 396
|
|
| SecF |
COG0341 |
Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular ... |
436-597 |
1.11e-16 |
|
Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440110 [Multi-domain] Cd Length: 291 Bit Score: 80.87 E-value: 1.11e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 436 PIQIVEERTVGPSLGQENIQAGMTAVVLGFAFVLAFMLMYYK-GFGLVANLALAANLVMIVGVMSMIpGATLTLPGIAGI 514
Cdd:COG0341 114 DVEIVRVEFVGPTVGKELTRKALLALLVALIGILIYIAFRFEwRFAVGAVVALLHDVLITLGIFSLF-GLEFDLTFIAAL 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 515 vLTV-GMAVDANVLIFERIREELGE--GRSPQQAVHHGYDSAFS-TIFDAnITTLIAAVILFSVGTGPIAGFAVTLAIGI 590
Cdd:COG0341 193 -LTIiGYSLNDTVVVFDRIRENLRKyrKMTLAEIINLSINQTLSrTINTS-LTTLLVVLALLFFGGETLRDFALALLIGI 270
|
170
....*....|.
gi 908743259 591 LT----SMFTA 597
Cdd:COG0341 271 IVgtysSIFIA 281
|
|
| SecD_SecF |
pfam02355 |
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF ... |
437-598 |
3.37e-16 |
|
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF protein export membrane proteins. This SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC. SecD and SecF are required to maintain a proton motive force.
Pssm-ID: 280510 [Multi-domain] Cd Length: 189 Bit Score: 77.26 E-value: 3.37e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 437 IQIVEERTVGPSLGQENIQAGMTAVVLGFAFVLAFMLMYYK-GFGLVANLALAANLVMIVGVMSMIpGATLTLPGIAGIV 515
Cdd:pfam02355 13 AEIISIETVGPTVGSELARKAVLALLFALLLILIYVGLRFEwRFALGAIIALAHDVIITVGVFSLF-GIEVDLATVAALL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 516 LTVGMAVDANVLIFERIREELGE--GRSPQQAVHHGYDSAFSTIFDANITTLIAAVILFSVGTGPIAGFAVTLAIGILTS 593
Cdd:pfam02355 92 TIIGYSVNDTVVVFDRVRENLRKktRATLNEIMNLSINQTLTRTINTSLTTLLVVVALFVFGGGSLKDFSLALLVGVIVG 171
|
....*
gi 908743259 594 MFTAI 598
Cdd:pfam02355 172 TYSSI 176
|
|
| PRK13024 |
PRK13024 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
436-597 |
3.25e-15 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 237276 [Multi-domain] Cd Length: 755 Bit Score: 79.12 E-value: 3.25e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 436 PIQIVEERTVGPSLGQENIQAGMTAVVLGFAFVLAFMLMYYK-GFGLVANLALAANLVMIVGVMSmIPGATLTLPGIAGI 514
Cdd:PRK13024 558 GGTIPSSETVGPTVGKELARNAIIAVLIALIGILLYILIRFEwTFSLGAILALLHDVLIVIGFFS-LFRLEVDLTFIAAI 636
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 515 VLTVGMAVDANVLIFERIREELGEGRSPQ--QAVHHGYDSAFSTIFDANITTLIAAVILFSVGTGPIAGFAVTLAIGIL- 591
Cdd:PRK13024 637 LTIIGYSINDTVVVFDRIRENLRLYKKKDlrEIVNKSINQTLSRTINTSLTTLLVLLALLIFGGSSLRNFSLALLVGLIv 716
|
....*....
gi 908743259 592 ---TSMFTA 597
Cdd:PRK13024 717 gtySSIFIA 725
|
|
| MMPL |
COG1033 |
Predicted exporter protein, RND superfamily [General function prediction only]; |
449-599 |
4.22e-13 |
|
Predicted exporter protein, RND superfamily [General function prediction only];
Pssm-ID: 440656 [Multi-domain] Cd Length: 767 Bit Score: 72.59 E-value: 4.22e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 449 LGQENIQAGMTAVVLGFAFVLAFMLMYYKGFGLVAnLALAANLV---MIVGVMSMIpGATLTLPGIAGIVLTVGMAVDAN 525
Cdd:COG1033 599 INESVIESQIRSLLLALLLIFLLLLLAFRSLRLGL-ISLIPNLLpilLTFGLMGLL-GIPLNIATAVVASIALGIGVDYT 676
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 908743259 526 VLIFERIREELGEGRSPQQAVHHgydsAFSTIFDANITTLIAAVILFSVGT----GPIAGFAVTLAIGILTSMFTAIV 599
Cdd:COG1033 677 IHFLSRYREERRKGGDLEEAIRR----ALRTTGKAILFTSLTLAAGFGVLLfssfPPLADFGLLLALGLLVALLAALL 750
|
|
| 3a0501s07 |
TIGR00966 |
protein-export membrane protein SecF; This bacterial protein is always found with the ... |
437-601 |
3.00e-12 |
|
protein-export membrane protein SecF; This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273368 [Multi-domain] Cd Length: 246 Bit Score: 66.91 E-value: 3.00e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 437 IQIVEERTVGPSLGQENIQAGMTAVVLGFAFVLAFMLMYYK-GFGLVANLALAANLVMIVGVMSMIpGATLTLPGIAGIV 515
Cdd:TIGR00966 80 AEIRSIDAVGPSVGGELARKAVLALLAALVLILIYITVRFEwRFALGAIVALVHDVIITVGVYSLF-GIEVNLTTVAALL 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 516 LTVGMAVDANVLIFERIREELGE--GRSPQQAVHHGYDSAFSTIFDANITTLIAAVILFSVGTGPIAGFAVTLAIGIlts 593
Cdd:TIGR00966 159 TIIGYSINDTVVVFDRIRENLRKytRKTFTEVINLSINQTLSRTINTSLTTLLAVLALYVFGGGVIKDFSLALLVGV--- 235
|
....*...
gi 908743259 594 mftaIVGT 601
Cdd:TIGR00966 236 ----IVGT 239
|
|
| MMPL |
COG1033 |
Predicted exporter protein, RND superfamily [General function prediction only]; |
458-599 |
7.49e-12 |
|
Predicted exporter protein, RND superfamily [General function prediction only];
Pssm-ID: 440656 [Multi-domain] Cd Length: 767 Bit Score: 68.35 E-value: 7.49e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 458 MTAVVLGFAFVLAFMLMYYKGF--GLVANLALAANLVMIVGVMSMIpGATLTLPGIAGIVLTVGMAVDANVLIFERIREE 535
Cdd:COG1033 221 AIFFPLALLLILLLLFLFFRSLrgVLLPLLVVLLAVIWTLGLMGLL-GIPLSPLTILVPPLLLAIGIDYGIHLLNRYREE 299
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 908743259 536 LGEGRSPQQAVHHGYDSAFSTIFDANITTLIA-AVILFSvGTGPIAGFAVTLAIGILTSMFTAIV 599
Cdd:COG1033 300 RRKGLDKREALREALRKLGPPVLLTSLTTAIGfLSLLFS-DIPPIRDFGIVAAIGVLLAFLTSLT 363
|
|
| secF |
PRK13021 |
preprotein translocase subunit SecF; Reviewed |
399-601 |
1.98e-11 |
|
preprotein translocase subunit SecF; Reviewed
Pssm-ID: 237274 [Multi-domain] Cd Length: 297 Bit Score: 65.26 E-value: 1.98e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 399 VATIQARLNSSFQITGINTPAEAHNLSLLLRAGALVAPIQIVEERTVGPSLGQENIQAGMTAVVLGFAFVLAFMLMYYK- 477
Cdd:PRK13021 70 VSVISASEPGRWVLRYAPADTAQSNVDIQQALAPLGTEVQVLNSSIVGPQVGQELAEQGGLALLVAMLCILGYLSYRFEw 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 478 GFGLVANLALAANLVMIVGVMSMIPgATLTLPGIAGIVLTVGMAVDANVLIFERIREELGEgrSPQQAVHHGYDSAFSTI 557
Cdd:PRK13021 150 RLASGALFALVHDVIFVLAFFALTQ-MEFNLTVLAAVLAILGYSLNDSIIIADRIRELLIA--KPKLAIQEINNQAIVAT 226
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 908743259 558 FDANI----TTLIAAVILFSVGTGPIAGFAVTLAIGILTSMFTAI-VGT 601
Cdd:PRK13021 227 FSRTMvtsgTTLMTVGALWIMGGGPLEGFSIAMFIGILTGTFSSIsVGT 275
|
|
| RND_1 |
NF037998 |
protein translocase SecDF, variant type; Members of this family are identified by TCDB as ... |
466-615 |
3.05e-11 |
|
protein translocase SecDF, variant type; Members of this family are identified by TCDB as belonging to 2.A.6.4.4, a variant 12-TM type SecDF, as found in Spiroplasma, Mesoplasma, and Acholeplasma.
Pssm-ID: 468306 Cd Length: 1237 Bit Score: 66.72 E-value: 3.05e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 466 AFVLAFMLMYYKGFGLVAnLALAANLVMIVGVMSMIPGATLTLPGIAGIVLTVGMAVDANVLIFERIREELG-EGRSPQQ 544
Cdd:NF037998 456 IAIMIYLLFAYRLLGLFA-IIIALTSISLTLYSPTWFGLAIGPESITAIFIAIGLVLESCSLLFEAFKKHLYkNKRSIEE 534
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 908743259 545 AVHHGYDSAFSTIFDANITTLIAAVILFSVGTGPIAGFAVTLAIGILTSMFTAIVGTRAVINAVIGGKRIN 615
Cdd:NF037998 535 SFKIANKETIGIIVDALVVLLIPNLSLFWIGSNSIKSFATILLVGVIISLVLVIIVARLMIWLTIKLQWFK 605
|
|
| YdfJ |
COG2409 |
Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily [General function ... |
456-619 |
1.93e-10 |
|
Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily [General function prediction only];
Pssm-ID: 441964 [Multi-domain] Cd Length: 697 Bit Score: 63.63 E-value: 1.93e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 456 AGMTAVVLGFAF---VLAFMLMyykgfgLVANLALAANLVMIVGVmsmipGATLTLPGIAGIVLTV---GMAVDANVLIF 529
Cdd:COG2409 179 LPVALVVLLLVFrslVAALLPL------LTAGLAVGVALGLLALL-----AAFTDVSSFAPNLLTMlglGVGIDYALFLV 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 530 ERIREELGEGRSPQQAVHHGYDSAFSTIFDANITTLIAAVILFSVGTGPIAGFAVTLAIGILTSMFTAIVGTRAVInaVI 609
Cdd:COG2409 248 SRYREELRAGEDREEAVARAVATAGRAVLFSGLTVAIALLGLLLAGLPFLRSMGPAAAIGVAVAVLAALTLLPALL--AL 325
|
170
....*....|
gi 908743259 610 GGKRINSLSI 619
Cdd:COG2409 326 LGRRVFWPRR 335
|
|
| 2A067 |
TIGR00921 |
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized ... |
459-605 |
2.85e-09 |
|
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 273340 [Multi-domain] Cd Length: 719 Bit Score: 60.24 E-value: 2.85e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 459 TAVVLGFAFVLAFMLMYYKG-----FGLVANL--ALAANLVMivGVMsmipGATLTLPGIAGIVLTVGMAVDANVLIFER 531
Cdd:TIGR00921 571 RMTIAGAILVLMILLAVFRNpikavFPLIAIGsgILWAIGLM--GLR----GIPSFLAMATTISIILGLGMDYSIHLAER 644
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 908743259 532 IREELGEgRSPQQAVHHGYDSAFSTIFDANITTLIAAVILFSVGTGPIAGFAVTLAIGILTSMFTAIVGTRAVI 605
Cdd:TIGR00921 645 YFEERKE-HGPKEAITHTMERTGPGILFSGLTTAGGFLSLLLSHFPIMRNFGLVQGIGVLSSLTAALVVFPALL 717
|
|
| PRK08578 |
PRK08578 |
preprotein translocase subunit SecF; Reviewed |
436-591 |
3.39e-09 |
|
preprotein translocase subunit SecF; Reviewed
Pssm-ID: 236302 [Multi-domain] Cd Length: 292 Bit Score: 58.40 E-value: 3.39e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 436 PIQIVEERTVGPSLGQENIQAGMTAVVLGFAFVLAFMLMYYKGF--GLVANLALAANLVMIVGVMSMIpGATLTLPGIAG 513
Cdd:PRK08578 115 SELNYSEKQIGPTFGSQFQEQALKAVGFAFIGMAVVVFLIFRTPvpSLAVILSAFSDIIIALALMNLF-GIELSLATVAA 193
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 514 IVLTVGMAVDANVLIFERIreeLGEGRSPQQAVHhgydSAFSTIFDANITTLIAAVILFSVGTGP----IAGFAVTLAIG 589
Cdd:PRK08578 194 LLMLIGYSVDSDILLTTRV---LKRRGTFDESIK----RAMRTGITMTLTTIAAMAVLYIVSTIPqaevLANIAAVLIFG 266
|
..
gi 908743259 590 IL 591
Cdd:PRK08578 267 LL 268
|
|
| MMPL |
pfam03176 |
MMPL family; Members of this family are putative integral membrane proteins from bacteria. ... |
458-613 |
5.72e-08 |
|
MMPL family; Members of this family are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport.
Pssm-ID: 308676 [Multi-domain] Cd Length: 332 Bit Score: 54.99 E-value: 5.72e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 458 MTAVVLGFAFVLAFMLMYYK------------GFGLVANLALAAnlvmIVGVMSMIPGATLTLPgIAGIVLtVGMAVDAN 525
Cdd:pfam03176 145 GLIEAVTLVVIFIILLIVYRsvvaallplltvGLSLGAAQGLVA----ILAHILGIGLSTFALN-LLVVLL-IAVGTDYA 218
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 526 VLIFERIREELGEGRSPQQAVHHGYDSAFSTIFDANITTLIAAVILFSVGTGPIAGFAVTLAIGILTSMFTAIVGTRAVi 605
Cdd:pfam03176 219 LFLVSRYREELRAGEDREEAVIRAVRGTGKVVTAAGLTVAIAMLALSFARLPVFAQVGPTIAIGVLVDVLAALTLLPAL- 297
|
....*...
gi 908743259 606 nAVIGGKR 613
Cdd:pfam03176 298 -LALLGRW 304
|
|
| PRK10629 |
PRK10629 |
EnvZ/OmpR regulon moderator MzrA; |
1-124 |
6.32e-07 |
|
EnvZ/OmpR regulon moderator MzrA;
Pssm-ID: 236728 Cd Length: 127 Bit Score: 48.85 E-value: 6.32e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 1 MLNKYPM-----WKYLLVLAVLAVgiLYATPNLYGRDPAIQVsgtKGTNADLSVLD--QVNKTLKDNSLTVKSTALENGQ 73
Cdd:PRK10629 1 MINPRMSlrqlaWLGAVLLLLAAL--LLAWSALRQQESTLAI---RAVHQGASLPDgfYVYQHLDANGIHIKSITPENDS 75
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 908743259 74 VLIRFTNVEDQLKAQDLLRNTLSDDYISAINMSPAQP-DWLKNLGANPMKLG 124
Cdd:PRK10629 76 LLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQDDNSQAmQWLTRLRDNSHRLG 127
|
|
| PRK13023 |
PRK13023 |
protein translocase subunit SecDF; |
445-598 |
1.95e-06 |
|
protein translocase subunit SecDF;
Pssm-ID: 171842 [Multi-domain] Cd Length: 758 Bit Score: 51.16 E-value: 1.95e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 445 VGPSLGQENIQAGMTAVVLGFAFVLAFMLMYYK-GFGLVANLALAANLVMIVGvMSMIPGATLTLPGIAGIVLTVGMAVD 523
Cdd:PRK13023 568 VGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRwQLALGAVLSTLHDVVILSG-MFIVFRMEFNLWSVAAILTIIGYSLN 646
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 908743259 524 ANVLIFERIREELGEGRS-PQQAV-HHGYDSAFSTIFDANITTLIAAVILFSVGTGPIAGFAVTLAIGILTSMFTAI 598
Cdd:PRK13023 647 DTVVIYDRVRENLRRYKSaPLPAIiDASINQTLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSI 723
|
|
| YdfJ |
COG2409 |
Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily [General function ... |
460-591 |
2.72e-06 |
|
Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily [General function prediction only];
Pssm-ID: 441964 [Multi-domain] Cd Length: 697 Bit Score: 50.53 E-value: 2.72e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 460 AVVLGFAFVLAFMLmyykgFG--LVANLALAANLVMIV---GVMSMI------------PGATLTLPGIAGIVLtVGMAV 522
Cdd:COG2409 524 PVVLGLIFLLLLLL-----FRsvVAPLKAVLTNLLSLGaalGVLVLVfqhgwlllgftpGPLDSFVPLLLFVIL-FGLGM 597
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 908743259 523 DANVLIFERIREELGEGRSPQQAVHHGYDSAFSTifdanITTliAAVILFSV----GTGP---IAGFAVTLAIGIL 591
Cdd:COG2409 598 DYEVFLVSRIREEYDRGGGTREAVIRGLARTGRV-----ITS--AALIMAAVfaafATSPlvfLKQIGFGLAVGVL 666
|
|
| COG4258 |
COG4258 |
Predicted exporter [General function prediction only]; |
463-599 |
3.30e-06 |
|
Predicted exporter [General function prediction only];
Pssm-ID: 443400 [Multi-domain] Cd Length: 783 Bit Score: 50.24 E-value: 3.30e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 463 LGFAFVLAFMLMYYKGF--GLVANLALAANLVMIVGVMSMIpGATLTLPGIAGIVLTVGMAVDANvlIFerireeLGEGR 540
Cdd:COG4258 647 LALLLILLLLLLRLRSLrrALRVLLPPLLAVLLTLAILGLL-GIPLNLFHLIALLLVLGIGIDYA--LF------FTEGL 717
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 541 SPQQAVHhgydSAFSTIFDANITTLIA-AVILFSvGTGPIAGFAVTLAIGILTSMFTAIV 599
Cdd:COG4258 718 LDKGELA----RTLLSILLAALTTLLGfGLLAFS-STPALRSFGLTVLLGILLALLLAPL 772
|
|
| 2A067 |
TIGR00921 |
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized ... |
444-619 |
3.62e-06 |
|
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 273340 [Multi-domain] Cd Length: 719 Bit Score: 50.22 E-value: 3.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 444 TVGPSLG---QENIQAGM-TAVVLGFAFVLAFMLMYYKGF--GLVANLALAANLVMIVGVMSMIpGATLTLPGIAGIVLT 517
Cdd:TIGR00921 178 TGSPAINydiEREFGKDMgTTMAISGILVVLVLLLDFKRWwrPLLPLVIILFGVAWVLGIMGWL-GIPLYATTLLAVPML 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 518 VGMAVDANVLIFERIREELGEGRSPQQAVHHGYDSAFSTIFDANITTLIAAVILFSVGTGPIAGFAVTLAIGILTSMFTA 597
Cdd:TIGR00921 257 IGVGIDYGIQTLNRYEEERDIGRAKGEAIVTAVRRTGRAVLIALLTTSAGFAALALSEFPMVSEFGLGLVAGLITAYLLT 336
|
170 180
....*....|....*....|..
gi 908743259 598 IVGTRAVINAVIGGKRINSLSI 619
Cdd:TIGR00921 337 LLVLPALLQSIDIGREKVKKEI 358
|
|
| AcrB |
COG0841 |
Multidrug efflux pump subunit AcrB [Defense mechanisms]; |
463-599 |
8.85e-06 |
|
Multidrug efflux pump subunit AcrB [Defense mechanisms];
Pssm-ID: 440603 [Multi-domain] Cd Length: 1015 Bit Score: 48.95 E-value: 8.85e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 463 LGFAFVLAFMLMYykgfglvanLALAAN--------LVM------IVGVMS--MIPGATLTLPGIAGIVLTVGMAVDANV 526
Cdd:COG0841 853 LGLAFLLALLLVY---------LVLAAQfesfiqplIILltvplaLIGALLglLLTGTPLNIYSQIGLIMLIGIVVKNAI 923
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 908743259 527 LIFERIREELGEGRSPQQAVHHGYDSAFSTIFdanITTL--IAAVILFSVGTGPIAGF----AVTLAIGILTSMFTAIV 599
Cdd:COG0841 924 LLVDFANQLREEGMSLREAILEAARLRLRPIL---MTSLatILGLLPLALGTGAGAEFrqplGIAVIGGLLFSTLLTLF 999
|
|
| PRK14726 |
PRK14726 |
protein translocase subunit SecDF; |
396-598 |
1.09e-05 |
|
protein translocase subunit SecDF;
Pssm-ID: 237805 [Multi-domain] Cd Length: 855 Bit Score: 48.56 E-value: 1.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 396 VINVATIQARLNS----SFQITGINTPA-------------EAHNLSLLLRAGALVAPIQIVEERTVGPSLGQENIQAGM 458
Cdd:PRK14726 596 NADIADIRARLNElnlgEVQVERFGSPRdaliriasqdggeNAEQSAVTLVRGELEDDYDFRRVEVVGPAVSGELTMAAT 675
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 459 TAVVLGFAFVLAFM-LMYYKGFGLVANLALAANLVMIVGVMsMIPGATLTLPGIAGIVLTVGMAVDANVLIFERIREELG 537
Cdd:PRK14726 676 LGVLAALAAILIYIwIRFEWQFAVGAIIATLHDVILTLGLF-VLTGIEFNLTSIAAILTIVGYSLNDTVVVYDRVRENLR 754
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 908743259 538 E-GRSP-QQAVHHGYDSAFSTIFDANITTLIAAVILFSVGTGPIAGFAVTLAIGILTSMFTAI 598
Cdd:PRK14726 755 RyKKMPlPILIDASINQTLSRTVLTSATTLLALLALYLFGGEVIRSFTFAMLFGVAVGTFSSI 817
|
|
| HpnN |
TIGR03480 |
hopanoid biosynthesis associated RND transporter like protein HpnN; The genomes containing ... |
444-610 |
2.69e-05 |
|
hopanoid biosynthesis associated RND transporter like protein HpnN; The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins appear to be related to the RND family of export proteins, particularly the hydrophobe/amphiphile efflux-3 (HAE3) family represented by TIGR00921.
Pssm-ID: 274598 [Multi-domain] Cd Length: 862 Bit Score: 47.30 E-value: 2.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 444 TVGPSLGQEN---IQAGMT-AVVLGFAFVLAFMLMYYKGFGLVAN--LALAANLVMIVGVMSMIPGaTLTLPGIAGIVLT 517
Cdd:TIGR03480 254 TGEVALSDEElatVSEGATvAGLLSFVLVLVLLWLALRSPRLVFAvlVTLIVGLILTAAFATLAVG-HLNLISVAFAVLF 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 518 VGMAVDANVLIFERIREELGEGRSPQQAVHHGYDSAFSTIFDANITTliaAVILFS-VGT--------GPIAGfavtlai 588
Cdd:TIGR03480 333 IGLGVDFAIQFSLRYREERFRGGNHREALSVAARRMGAALLLAALAT---AAGFFAfLPTdykgvselGIIAG------- 402
|
170 180
....*....|....*....|..
gi 908743259 589 gilTSMFTAIVGTRAVINAVIG 610
Cdd:TIGR03480 403 ---TGMFIALFVTLTVLPALLR 421
|
|
| actII |
TIGR00833 |
Transport protein; The Resistance-Nodulation-Cell Division (RND) Superfamily- MmpL sub family ... |
460-610 |
1.27e-04 |
|
Transport protein; The Resistance-Nodulation-Cell Division (RND) Superfamily- MmpL sub family (TC 2.A.6.5)Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 129913 [Multi-domain] Cd Length: 910 Bit Score: 45.35 E-value: 1.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 460 AVVLGFAFVLAFMLMYYKGFglVANLALAANLVM----IVGVMSMI------PGATLTLPGIAGIVLtVGMAVDANVLIF 529
Cdd:TIGR00833 749 ISIITLAIVFMILALLLRAP--VAPIVLIGSVALsylwALGLSVLAfqhilgAELHWSVLAGVFVLL-VALGVDYNMLLV 825
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 530 ERIREELGEGrsPQQAVHHGYDSAFSTIFDANITTLIAAVILFSVGTGPIAGFAVTLAIGILTSMFTAIVGTRAVINAVI 609
Cdd:TIGR00833 826 SRIKEESPAG--NRTGIIRALGSTGGVITAAGLVFAGTMAALASAQLTAIAQFGFTVGVGILLDTFIVRSVTVPALTLLL 903
|
.
gi 908743259 610 G 610
Cdd:TIGR00833 904 G 904
|
|
| Sec_GG |
pfam07549 |
SecD/SecF GG Motif; This family consists of various prokaryotic SecD and SecF protein export ... |
116-140 |
2.64e-04 |
|
SecD/SecF GG Motif; This family consists of various prokaryotic SecD and SecF protein export membrane proteins. This SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC. SecD and SecF are required to maintain a proton motive force. This alignment encompasses a -GG- motif typically found in N-terminal half of the SecD/SecF proteins.
Pssm-ID: 462205 [Multi-domain] Cd Length: 27 Bit Score: 38.42 E-value: 2.64e-04
|
| AcrB |
COG0841 |
Multidrug efflux pump subunit AcrB [Defense mechanisms]; |
460-598 |
3.43e-04 |
|
Multidrug efflux pump subunit AcrB [Defense mechanisms];
Pssm-ID: 440603 [Multi-domain] Cd Length: 1015 Bit Score: 43.94 E-value: 3.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 460 AVVLGFAFVLAFMLMYYKGFGLvanlalaaNlvmivgvmsmipgaTLTLpgiAGIVLTVGMAVDA------NVlifERIR 533
Cdd:COG0841 362 AVAIPVSLIGTFAVMYLLGFSL--------N--------------ILTL---FALVLAIGIVVDDaivvveNI---ERHM 413
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 908743259 534 EElgeGRSPQQAVHHGYDSAFSTIFDANITTLIAAV-ILFSVGtgpIAG-----FAVTLAIGILTSMFTAI 598
Cdd:COG0841 414 EE---GLSPLEAAIKGAREVAGAVIASTLTLVAVFLpLAFMGG---ITGqlfrqFALTVAIALLISLFVAL 478
|
|
| ACR_tran |
pfam00873 |
AcrB/AcrD/AcrF family; Members of this family are integral membrane proteins. Some are ... |
437-604 |
4.72e-04 |
|
AcrB/AcrD/AcrF family; Members of this family are integral membrane proteins. Some are involved in drug resistance. AcrB cooperates with a membrane fusion protein, AcrA, and an outer membrane channel TolC. The structure shows the AcrB forms a homotrimer.
Pssm-ID: 395701 [Multi-domain] Cd Length: 1021 Bit Score: 43.44 E-value: 4.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 437 IQIVEERTvgpslgqENIQAGMTAVV--LGFAFVLAFMLMYYKGFGLVANL--ALAANLVMIVGVMSMIP-GATLTLPGI 511
Cdd:pfam00873 316 IVVVYDTT-------PFIRASIEEVVktLLEAIVLVILVMFLFLQNWRATLipAIAIPLSLLGTFAVMKAfGFSINTLTL 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 512 AGIVLTVGMAVDANVLIFERIREELGE-GRSPQQAVHHGY-DSAFSTIFDANITTLIAAVILFSVG-TGPI-AGFAVTLA 587
Cdd:pfam00873 389 GGLVLAIGLVVDDAIVVVENIERVLEEnGLKPLEAAYKSMgEIGGALVAIALVLSAVFLPILFLGGlTGRIfRQFAITIV 468
|
170
....*....|....*..
gi 908743259 588 IGILTSMFTAIVGTRAV 604
Cdd:pfam00873 469 LAILLSVLVALTLTPAL 485
|
|
| ACR_tran |
pfam00873 |
AcrB/AcrD/AcrF family; Members of this family are integral membrane proteins. Some are ... |
451-599 |
1.28e-03 |
|
AcrB/AcrD/AcrF family; Members of this family are integral membrane proteins. Some are involved in drug resistance. AcrB cooperates with a membrane fusion protein, AcrA, and an outer membrane channel TolC. The structure shows the AcrB forms a homotrimer.
Pssm-ID: 395701 [Multi-domain] Cd Length: 1021 Bit Score: 41.90 E-value: 1.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 451 QENIQAGMTAVVLGF-AFVLAFMLMYykgfglvanlALAANLVMIVGVMSMIP-------------GATLTLPGIAGIVL 516
Cdd:pfam00873 855 EQEQLAGNSLPILIAlALLVVFLVLA----------ALYESWSDPLSIMLTVPlalvgallalwlrGLPNSVYAQVGLIL 924
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 517 TVGMAVDANVLIFERIREEL-GEGRSPQQAVHHGYDSAFSTIFDANITTLIAAVIL-FSVGTGpiAGFAVTLAIGILTSM 594
Cdd:pfam00873 925 LIGLAVKNAILMVEFANELReQEGKSLEEAILEACRLRLRPILMTALAAILGVLPLaLSTGAG--SELQQPLGIVVFGGL 1002
|
....*
gi 908743259 595 FTAIV 599
Cdd:pfam00873 1003 VTSTV 1007
|
|
| Patched |
pfam02460 |
Patched family; The transmembrane protein Patched is a receptor for the morphogene Sonic ... |
444-595 |
4.25e-03 |
|
Patched family; The transmembrane protein Patched is a receptor for the morphogene Sonic Hedgehog. This protein associates with the smoothened protein to transduce hedgehog signals.
Pssm-ID: 308203 [Multi-domain] Cd Length: 793 Bit Score: 40.03 E-value: 4.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 444 TVGPSLgqenIQAGMTAVVLgfAFVLAFMLMYYKGFGLVANLALAANLVMIVGVMSMIpGATLTLPGIAGIVLTVGMAVD 523
Cdd:pfam02460 636 TILPST----IQNIVITLIC--MFIVCFLFIPNPPCVFVITLAIASIDIGVFGFLSLW-GVDLDPISMITIIMSIGFSVD 708
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908743259 524 ANVLIFERIREElgEGRSPQQAVHhgydSAFST----IFDANITTLIAAVILFSVGTGPIAGFAVT----LAIGILTSMF 595
Cdd:pfam02460 709 FSAHIAYHFVRS--RGDTPAERVV----DALEAlgwpVFQGGLSTILGVLVLLFVPSYMVVVFFKTvflvVAIGLLHGLF 782
|
|
| |
