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Conserved domains on  [gi|902686363|ref|YP_009158986|]
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photosystem I reaction center subunit M (chloroplast) [Amentotaxus argotaenia]

Protein Classification

photosystem I reaction center subunit XII( domain architecture ID 10000152)

photosystem I reaction center subunit XII (PsaM) forms part of the photosystem I complex and its binding is stabilised by PsaI

Gene Ontology:  GO:0015979|GO:0009522
PubMed:  11687207|3333014

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
psaM CHL00190
photosystem I subunit XII; Provisional
 1-29 4.22e-05

photosystem I subunit XII; Provisional


:

Pssm-ID: 177090  Cd Length: 30  Bit Score: 34.38  E-value: 4.22e-05
                        10        20
                ....*....|....*....|....*....
gi 902686363  1 MISEGQILIALFAAFITSILAFRLGKALY 29
Cdd:CHL00190  1 MISDSQIFIALFLALTTGILAIRLGTALY 29
 
Name Accession Description Interval E-value
psaM CHL00190
photosystem I subunit XII; Provisional
 1-29 4.22e-05

photosystem I subunit XII; Provisional


Pssm-ID: 177090  Cd Length: 30  Bit Score: 34.38  E-value: 4.22e-05
                        10        20
                ....*....|....*....|....*....
gi 902686363  1 MISEGQILIALFAAFITSILAFRLGKALY 29
Cdd:CHL00190  1 MISDSQIFIALFLALTTGILAIRLGTALY 29
PS_I_psaM TIGR03053
photosystem I reaction center subunit XII; Members of this protein family are PsaM, which is ...
 2-29 4.29e-04

photosystem I reaction center subunit XII; Members of this protein family are PsaM, which is subunit XII of the photosystem I reaction center. This protein is found in both the Cyanobacteria and the chloroplasts of plants, but is absent from non-oxygenic photosynthetic bacteria such as Rhodobacter sphaeroides. Species that contain photosystem I also contain photosystem II, which splits water and releases molecular oxygen. The seed alignment for this model includes sequences from pfam07465 and additional sequences, as from Prochlorococcus. [Energy metabolism, Photosynthesis]


Pssm-ID: 274411  Cd Length: 29  Bit Score: 32.03  E-value: 4.29e-04
                         10        20
                 ....*....|....*....|....*...
gi 902686363   2 ISEGQILIALFAAFITSILAFRLGKALY 29
Cdd:TIGR03053  1 ISDSQIFIALVIALIAGILALRLGKELY 28
PsaM pfam07465
Photosystem I protein M (PsaM); This family consists of several plant and cyanobacterial ...
 2-29 8.89e-03

Photosystem I protein M (PsaM); This family consists of several plant and cyanobacterial photosystem I protein M (PsaM) sequences. PsaM forms part of the photosystem I complex and its binding is stabilized by PsaI.


Pssm-ID: 429475  Cd Length: 28  Bit Score: 28.64  E-value: 8.89e-03
                         10        20
                 ....*....|....*....|....*...
gi 902686363   2 ISEGQILIALFAAFITSILAFRLGKALY 29
Cdd:pfam07465  1 LSDTQVFIALVVALLPGILALRLGTALY 28
 
Name Accession Description Interval E-value
psaM CHL00190
photosystem I subunit XII; Provisional
 1-29 4.22e-05

photosystem I subunit XII; Provisional


Pssm-ID: 177090  Cd Length: 30  Bit Score: 34.38  E-value: 4.22e-05
                        10        20
                ....*....|....*....|....*....
gi 902686363  1 MISEGQILIALFAAFITSILAFRLGKALY 29
Cdd:CHL00190  1 MISDSQIFIALFLALTTGILAIRLGTALY 29
PS_I_psaM TIGR03053
photosystem I reaction center subunit XII; Members of this protein family are PsaM, which is ...
 2-29 4.29e-04

photosystem I reaction center subunit XII; Members of this protein family are PsaM, which is subunit XII of the photosystem I reaction center. This protein is found in both the Cyanobacteria and the chloroplasts of plants, but is absent from non-oxygenic photosynthetic bacteria such as Rhodobacter sphaeroides. Species that contain photosystem I also contain photosystem II, which splits water and releases molecular oxygen. The seed alignment for this model includes sequences from pfam07465 and additional sequences, as from Prochlorococcus. [Energy metabolism, Photosynthesis]


Pssm-ID: 274411  Cd Length: 29  Bit Score: 32.03  E-value: 4.29e-04
                         10        20
                 ....*....|....*....|....*...
gi 902686363   2 ISEGQILIALFAAFITSILAFRLGKALY 29
Cdd:TIGR03053  1 ISDSQIFIALVIALIAGILALRLGKELY 28
PsaM pfam07465
Photosystem I protein M (PsaM); This family consists of several plant and cyanobacterial ...
 2-29 8.89e-03

Photosystem I protein M (PsaM); This family consists of several plant and cyanobacterial photosystem I protein M (PsaM) sequences. PsaM forms part of the photosystem I complex and its binding is stabilized by PsaI.


Pssm-ID: 429475  Cd Length: 28  Bit Score: 28.64  E-value: 8.89e-03
                         10        20
                 ....*....|....*....|....*...
gi 902686363   2 ISEGQILIALFAAFITSILAFRLGKALY 29
Cdd:pfam07465  1 LSDTQVFIALVVALLPGILALRLGTALY 28
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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