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Conserved domains on  [gi|902642279|gb|AKS04160|]
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NADH dehydrogenase subunit 3 (mitochondrion) [Parasagitta elegans]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009625)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 1-105 5.37e-23

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 85.33  E-value: 5.37e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902642279   1 MNNVAAYFVVAVTLSLVLLLGSLFGFKLKSNREKGSPFECGFDPSGVSRVTFCMKFFMISIIFLVFDVEVTLVFPMIYSM 80
Cdd:MTH00203   1 MNLIMLFFLIALLLSLILLFIAFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWSN 80

                         90       100       110
                 ....*....|....*....|....*....|..
gi 902642279  81 YQ-------VLSFLMILMIGLVYEWAYGGLQW 105
Cdd:MTH00203  81 QLsslslllAFLFLILLTLGLIYEWLQGGLEW 112
 
Name Accession Description Interval E-value
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 1-105 5.37e-23

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 85.33  E-value: 5.37e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902642279   1 MNNVAAYFVVAVTLSLVLLLGSLFGFKLKSNREKGSPFECGFDPSGVSRVTFCMKFFMISIIFLVFDVEVTLVFPMIYSM 80
Cdd:MTH00203   1 MNLIMLFFLIALLLSLILLFIAFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWSN 80

                         90       100       110
                 ....*....|....*....|....*....|..
gi 902642279  81 YQ-------VLSFLMILMIGLVYEWAYGGLQW 105
Cdd:MTH00203  81 QLsslslllAFLFLILLTLGLIYEWLQGGLEW 112
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
29-104 8.00e-20

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 76.69  E-value: 8.00e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902642279   29 KSNREKGSPFECGFDPSGVSRVTFCMKFFMISIIFLVFDVEVTLVFP--------MIYSMYQVLSFLMILMIGLVYEWAY 100
Cdd:pfam00507  11 RPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPwavsfrelGWFGFVEMLIFIAILLVGLVYAWKK 90


                  ....
gi 902642279  101 GGLQ 104
Cdd:pfam00507  91 GALE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 29-105 9.95e-19

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 74.77  E-value: 9.95e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902642279  29 KSNREKGSPFECGFDPSGVSRVTFCMKFFMISIIFLVFDVEVTLVFP--------MIYSMYQVLSFLMILMIGLVYEWAY 100
Cdd:COG0838   33 RPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPwavvfrelGWFGLIEMLVFIAILLVGLIYAWKK 112


                 ....*
gi 902642279 101 GGLQW 105
Cdd:COG0838  113 GALEW 117
 
Name Accession Description Interval E-value
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 1-105 5.37e-23

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 85.33  E-value: 5.37e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902642279   1 MNNVAAYFVVAVTLSLVLLLGSLFGFKLKSNREKGSPFECGFDPSGVSRVTFCMKFFMISIIFLVFDVEVTLVFPMIYSM 80
Cdd:MTH00203   1 MNLIMLFFLIALLLSLILLFIAFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWSN 80

                         90       100       110
                 ....*....|....*....|....*....|..
gi 902642279  81 YQ-------VLSFLMILMIGLVYEWAYGGLQW 105
Cdd:MTH00203  81 QLsslslllAFLFLILLTLGLIYEWLQGGLEW 112
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 33-105 5.42e-23

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 85.43  E-value: 5.42e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902642279  33 EKGSPFECGFDPSGVSRVTFCMKFFMISIIFLVFDVEVTLVFP------MIYSMYQVLSFLMILM---IGLVYEWAYGGL 103
Cdd:MTH00069  31 EKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPtpwasqLNTPTNTLFWSTLILIlltLGLIYEWIQGGL 110


                 ..
gi 902642279 104 QW 105
Cdd:MTH00069 111 EW 112
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 30-106 6.82e-23

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 85.29  E-value: 6.82e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902642279  30 SNREKGSPFECGFDPSGVSRVTFCMKFFMISIIFLVFDVEVTLVFPMIYSMYQVLS---------FLMILMIGLVYEWAY 100
Cdd:MTH00148  31 SDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQSLGSSFSvwsltslfiFLLILILGLFHEWNE 110


                 ....*.
gi 902642279 101 GGLQWM 106
Cdd:MTH00148 111 GSLDWV 116
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 33-105 7.37e-22

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 82.66  E-value: 7.37e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902642279  33 EKGSPFECGFDPSGVSRVTFCMKFFMISIIFLVFDVEVTLVFPM---------IYSMYQVLSFLMILMIGLVYEWAYGGL 103
Cdd:MTH00136  33 EKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLpwgdqlpspLLTFFWATAVLILLTLGLIYEWLQGGL 112


                 ..
gi 902642279 104 QW 105
Cdd:MTH00136 113 EW 114
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 33-105 7.87e-22

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 82.72  E-value: 7.87e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902642279  33 EKGSPFECGFDPSGVSRVTFCMKFFMISIIFLVFDVEVTLVFPMIYSMYQV---------LSFLMILMIGLVYEWAYGGL 103
Cdd:MTH00042  33 EKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPATLITnpstllpisLIFLIILTIGLVYEWVNGGL 112


                 ..
gi 902642279 104 QW 105
Cdd:MTH00042 113 EW 114
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 33-105 1.33e-21

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 81.91  E-value: 1.33e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902642279  33 EKGSPFECGFDPSGVSRVTFCMKFFMISIIFLVFDVEVTLVFPMIYSMYQ---------VLSFLMILMIGLVYEWAYGGL 103
Cdd:MTH00106  32 EKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTnnlntmltmALLLISLLALSLAYEWTQKGL 111


                 ..
gi 902642279 104 QW 105
Cdd:MTH00106 112 EW 113
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 25-107 1.98e-21

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 81.58  E-value: 1.98e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902642279  25 GFKLKSNREKGSPFECGFDPSGVSRVTFCMKFFMISIIFLVFDVEVTLVFPMI---------YSMYQVLSFLMILMIGLV 95
Cdd:MTH00202  26 SFRSLMDREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPlvlksswskGGLLGGTIFLLILIGGLI 105

                         90
                 ....*....|..
gi 902642279  96 YEWAYGGLQWMV 107
Cdd:MTH00202 106 HEWKEGSLDWVK 117
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 28-106 2.16e-21

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 81.47  E-value: 2.16e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902642279  28 LKSNREKGSPFECGFDPSGVSRVTFCMKFFMISIIFLVFDVEVTLVFPMI---------YSMYQVLSFLMILMIGLVYEW 98
Cdd:MTH00113  27 TKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPwainlttptTTLTWATIILTLLTLGLIYEW 106


                 ....*...
gi 902642279  99 AYGGLQWM 106
Cdd:MTH00113 107 LQGGLEWA 114
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 27-105 3.93e-21

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 80.59  E-value: 3.93e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902642279  27 KLKSNREKGSPFECGFDPSGVSRVTFCMKFFMISIIFLVFDVEVTLVFPMIYSM---------YQVLSFLMILMIGLVYE 97
Cdd:MTH00161  26 KSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFktsnmmswlITSSFFILILLLGLYYE 105


                 ....*...
gi 902642279  98 WAYGGLQW 105
Cdd:MTH00161 106 WNQGALEW 113
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 30-105 1.80e-20

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 79.13  E-value: 1.80e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902642279  30 SNREKGSPFECGFDPSGVSRVTFCMKFFMISIIFLVFDVEVTLVFPMI---------YSMYQVLSFLMILMIGLVYEWAY 100
Cdd:MTH00012  31 ADREKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPtilmtstskTVVYTSILFLLILVIGLIHEWRE 110


                 ....*
gi 902642279 101 GGLQW 105
Cdd:MTH00012 111 GSLDW 115
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
29-104 8.00e-20

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 76.69  E-value: 8.00e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902642279   29 KSNREKGSPFECGFDPSGVSRVTFCMKFFMISIIFLVFDVEVTLVFP--------MIYSMYQVLSFLMILMIGLVYEWAY 100
Cdd:pfam00507  11 RPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPwavsfrelGWFGFVEMLIFIAILLVGLVYAWKK 90


                  ....
gi 902642279  101 GGLQ 104
Cdd:pfam00507  91 GALE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 29-105 9.95e-19

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 74.77  E-value: 9.95e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902642279  29 KSNREKGSPFECGFDPSGVSRVTFCMKFFMISIIFLVFDVEVTLVFP--------MIYSMYQVLSFLMILMIGLVYEWAY 100
Cdd:COG0838   33 RPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPwavvfrelGWFGLIEMLVFIAILLVGLIYAWKK 112


                 ....*
gi 902642279 101 GGLQW 105
Cdd:COG0838  113 GALEW 117
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 33-105 5.35e-17

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 70.12  E-value: 5.35e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902642279  33 EKGSPFECGFDPSGVSRVTFCMKFFMISIIFLVFDVEVTLVFPM--------IYSMYQVLSFLMILMIGLVYEWAYGGLQ 104
Cdd:MTH00055  37 EKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPWcvvynqigLFGFWVMYLFLIILTIGLIYEWVKGGLE 116


                 .
gi 902642279 105 W 105
Cdd:MTH00055 117 W 117
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 29-105 2.46e-16

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 68.81  E-value: 2.46e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902642279  29 KSNREKGSPFECGFDPSGVSRVTFCMKFFMISIIFLVFDVEVTLVFPM--------IYSMYQVLSFLMILMIGLVYEWAY 100
Cdd:MTH00030  38 KPDSEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLFPWsivfnqlnLFSFWIVYTFLIVLAIGLAYEWIK 117


                 ....*
gi 902642279 101 GGLQW 105
Cdd:MTH00030 118 GGLEW 122
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 31-105 5.82e-16

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 67.58  E-value: 5.82e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902642279  31 NREKGSPFECGFDPSGVSRVTFCMKFFMISIIFLVFDVEVTLVFPMIYSMYQV--------LSFLMILMIGLVYEWAYGG 102
Cdd:PRK06602  38 DREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFLFPWAVSFREIgwlgfveaMIFILVLLVGLVYLWRKGA 117


                 ...
gi 902642279 103 LQW 105
Cdd:PRK06602 118 LDW 120
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 31-105 1.57e-15

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 66.24  E-value: 1.57e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902642279  31 NREKGSPFECGFDPSGVSRVTFCMKFFMISIIFLVFDVEVTLVFP--------MIYSMYQVLSFLMILMIGLVYEWAYGG 102
Cdd:MTH00018  30 DREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFPwcvlynqiAPFGFWTMVGFLFILTLGLIYEWIKGG 109


                 ...
gi 902642279 103 LQW 105
Cdd:MTH00018 110 LEW 112
ndhC CHL00022
NADH dehydrogenase subunit 3
 33-105 1.12e-10

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 54.22  E-value: 1.12e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902642279  33 EKGSPFECGFDPSGVSRVTFCMKFFMISIIFLVFDVEVTLVFPMIYSMYQ--------VLSFLMILMIGLVYEWAYGGLQ 104
Cdd:CHL00022  39 EKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVlgvsafieALIFVLILIVGLVYAWRKGALE 118


                 .
gi 902642279 105 W 105
Cdd:CHL00022 119 W 119
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
29-106 6.37e-10

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 52.05  E-value: 6.37e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902642279  29 KSNREKGSPFECGFDPSGVSRVTFCMKFFMISIIFLVFDVEVTLVFPM--------IYSMYQVLSFLMILMIGLVYEWAY 100
Cdd:PRK07756  37 KPSAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYPWavaydklgLFALIEMLIFVVMLLVGLAYAWKK 116


                 ....*.
gi 902642279 101 GGLQWM 106
Cdd:PRK07756 117 KVLQWL 122
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 31-105 2.24e-08

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 48.13  E-value: 2.24e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902642279  31 NREKGSPFECGFDPSG--VSRVTFCMKFFMISIIFLVFDVEVTLVFPM--------IYSMYQVLSFLMILMIGLVYEWAY 100
Cdd:PRK07928  34 NRAKLEAYECGIEPTPqpAGGGRFPVKYYLTAMLFIVFDIEIVFLYPWavsfdalgVFGLVEMALFMLTVFVAYAYVWRR 113


                 ....*
gi 902642279 101 GGLQW 105
Cdd:PRK07928 114 GGLEW 118
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
27-105 8.48e-07

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 44.27  E-value: 8.48e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902642279  27 KLKSNREKGSPFECGFDPSGVSRvTFCMKFFMISIIFLVFDVEVTLVFPM--------IYSMYQVLSFLMILMIGLVYEW 98
Cdd:PRK08489  40 QKNTEKLKLAIYECGPEPVKQPN-RISSHFYIMALLFILFDVEIVFMFPWavdfkllgLFGLIEMLLFIVLLTIGFIYAW 118


                 ....*..
gi 902642279  99 AYGGLQW 105
Cdd:PRK08489 119 KKGALEW 125
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 29-107 7.72e-04

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 36.03  E-value: 7.72e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902642279  29 KSNREKGSPFECGFDPSGVSRVTFCMKFFMISIIFLVFDVEVT----LVFPMIYSMYQVLSFLMILMIGLVYEWAYGGLQ 104
Cdd:MTH00092  29 KFDLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVmflgLLVSDFSSLISFFMLMIFIFFGFYMEWWYGKLI 108


                 ...
gi 902642279 105 WMV 107
Cdd:MTH00092 109 WVI 111
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
 30-107 1.40e-03

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 35.26  E-value: 1.40e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902642279  30 SNREKGSPFECGFDPSGVSRVTFCMKFFMISIIFLVFDVEVTLVFPM------IYSMYQVLSFLMILMIGLVYEWAYGGL 103
Cdd:MTH00060  33 GGFSWVSSFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLLNMpfqgllFYNFWYYYFFLLLLFLGFVVELFSGYV 112


                 ....
gi 902642279 104 QWMV 107
Cdd:MTH00060 113 RWVY 116
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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