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Conserved domains on  [gi|902642067|gb|AKS03986|]
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NADH dehydrogenase subunit 3 (mitochondrion) [Spadella cephaloptera]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009625)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 1-105 7.04e-30

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 103.44  E-value: 7.04e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902642067   1 MKFIMITMLTAMMISMIFAVGVILNNKSMLDKEKSSPFECGFDPGSISRLPFCMKFFLVAVIFLVFDIEVALIIPMPM-- 78
Cdd:MTH00203   1 MNLIMLFFLIALLLSLILLFIAFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWsn 80

                         90       100       110
                 ....*....|....*....|....*....|..
gi 902642067  79 -----SFLSIQIFLMILVSGLFYEWFYGGLDW 105
Cdd:MTH00203  81 qlsslSLLLAFLFLILLTLGLIYEWLQGGLEW 112
 
Name Accession Description Interval E-value
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 1-105 7.04e-30

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 103.44  E-value: 7.04e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902642067   1 MKFIMITMLTAMMISMIFAVGVILNNKSMLDKEKSSPFECGFDPGSISRLPFCMKFFLVAVIFLVFDIEVALIIPMPM-- 78
Cdd:MTH00203   1 MNLIMLFFLIALLLSLILLFIAFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWsn 80

                         90       100       110
                 ....*....|....*....|....*....|..
gi 902642067  79 -----SFLSIQIFLMILVSGLFYEWFYGGLDW 105
Cdd:MTH00203  81 qlsslSLLLAFLFLILLTLGLIYEWLQGGLEW 112
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
31-104 1.72e-20

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 79.00  E-value: 1.72e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902642067   31 DKEKSSPFECGFDPGSISRLPFCMKFFLVAVIFLVFDIEVALIIP--------MPMSFLSIQIFLMILVSGLFYEWFYGG 102
Cdd:pfam00507  13 NPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPwavsfrelGWFGFVEMLIFIAILLVGLVYAWKKGA 92


                  ..
gi 902642067  103 LD 104
Cdd:pfam00507  93 LE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 3-105 7.58e-18

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 72.85  E-value: 7.58e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902642067   3 FIMITMLTAMMISMIFAVGVILNNKSmlDKEKSSPFECGFDPGSISRLPFCMKFFLVAVIFLVFDIEVALIIP------- 75
Cdd:COG0838    9 LIFLLVALGLALAMLLLSRLLGPKRP--NPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPwavvfre 86

                         90       100       110
                 ....*....|....*....|....*....|.
gi 902642067  76 -MPMSFLSIQIFLMILVSGLFYEWFYGGLDW 105
Cdd:COG0838   87 lGWFGLIEMLVFIAILLVGLIYAWKKGALEW 117
 
Name Accession Description Interval E-value
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 1-105 7.04e-30

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 103.44  E-value: 7.04e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902642067   1 MKFIMITMLTAMMISMIFAVGVILNNKSMLDKEKSSPFECGFDPGSISRLPFCMKFFLVAVIFLVFDIEVALIIPMPM-- 78
Cdd:MTH00203   1 MNLIMLFFLIALLLSLILLFIAFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWsn 80

                         90       100       110
                 ....*....|....*....|....*....|..
gi 902642067  79 -----SFLSIQIFLMILVSGLFYEWFYGGLDW 105
Cdd:MTH00203  81 qlsslSLLLAFLFLILLTLGLIYEWLQGGLEW 112
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-107 1.38e-28

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 100.32  E-value: 1.38e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902642067   1 MKFIMITMLTAMMISMI-FAVGVILNNKSMLDKEKSSPFECGFDPGSISRLPFCMKFFLVAVIFLVFDIEVALIIPMPMS 79
Cdd:MTH00148   1 MLSILLSLLFALILSPVlLLLGLVLSKRSYSDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQS 80

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 902642067  80 FLSIQ---------IFLMILVSGLFYEWFYGGLDWMK 107
Cdd:MTH00148  81 LGSSFsvwsltslfIFLLILILGLFHEWNEGSLDWVS 117
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 1-107 5.52e-28

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 98.91  E-value: 5.52e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902642067   1 MKFIMITMLTAMMISM-IFAVGVILNNKSMLDKEKSSPFECGFDPGSISRLPFCMKFFLVAVIFLVFDIEVALIIPMPMS 79
Cdd:MTH00202   1 MLLILFMSILSILISSlLFLVSWMLSFRSLMDREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLV 80

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 902642067  80 ---------FLSIQIFLMILVSGLFYEWFYGGLDWMK 107
Cdd:MTH00202  81 lksswskggLLGGTIFLLILIGGLIHEWKEGSLDWVK 117
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 1-105 4.20e-27

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 96.53  E-value: 4.20e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902642067   1 MKFIMITMLTAMMISMIFAVGVILNNKSMLDKEKSSPFECGFDPGSISRLPFCMKFFLVAVIFLVFDIEVALIIPMP--- 77
Cdd:MTH00136   1 MNLITTILTITIALSLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPwgd 80

                         90       100       110
                 ....*....|....*....|....*....|....
gi 902642067  78 ------MSFLSIQIFLMILVSGLFYEWFYGGLDW 105
Cdd:MTH00136  81 qlpsplLTFFWATAVLILLTLGLIYEWLQGGLEW 114
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 1-105 9.71e-27

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 95.82  E-value: 9.71e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902642067   1 MKFIMITMLTAMMISMIFAVGVILNNKSmLDKEKSSPFECGFDPGSISRLPFCMKFFLVAVIFLVFDIEVALIIPMPMSF 80
Cdd:MTH00042   2 TNLIFFLLIILILTSLLLLAGHFLPSRS-PDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPAT 80

                         90       100       110
                 ....*....|....*....|....*....|....
gi 902642067  81 LSIQ---------IFLMILVSGLFYEWFYGGLDW 105
Cdd:MTH00042  81 LITNpstllpislIFLIILTIGLVYEWVNGGLEW 114
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 4-105 1.56e-25

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 92.75  E-value: 1.56e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902642067   4 IMITMLTAMMISMIFAVGVILNNKSMLDKEKSSPFECGFDPGSISRLPFCMKFFLVAVIFLVFDIEVALIIPMP------ 77
Cdd:MTH00069   2 IMLMLLISTILSLILITISFWLPLNNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTPwasqln 81

                         90       100       110
                 ....*....|....*....|....*....|..
gi 902642067  78 ----MSFLSIQIfLMILVSGLFYEWFYGGLDW 105
Cdd:MTH00069  82 tptnTLFWSTLI-LILLTLGLIYEWIQGGLEW 112
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 5-105 1.74e-25

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 92.61  E-value: 1.74e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902642067   5 MITMLTAMMISM-----IFAVGVILNNKSMLDKEKSSPFECGFDPGSISRLPFCMKFFLVAVIFLVFDIEVALIIPMP-- 77
Cdd:MTH00012   1 MSLMMIPMMISLilpplVLGAAWVLAARSTADREKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPti 80

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 902642067  78 -------MSFLSIQIFLMILVSGLFYEWFYGGLDW 105
Cdd:MTH00012  81 lmtstskTVVYTSILFLLILVIGLIHEWREGSLDW 115
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 4-105 5.53e-25

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 91.15  E-value: 5.53e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902642067   4 IMITMLTAMMISMIFAVGVILNNKSMLDKEKSSPFECGFDPGSISRLPFCMKFFLVAVIFLVFDIEVALIIPMP------ 77
Cdd:MTH00106   3 LMLTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPwasqtn 82

                         90       100       110
                 ....*....|....*....|....*....|.
gi 902642067  78 ---MSFLSIQIFLMILVSGLFYEWFYGGLDW 105
Cdd:MTH00106  83 nlnTMLTMALLLISLLALSLAYEWTQKGLEW 113
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 2-105 2.28e-24

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 89.45  E-value: 2.28e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902642067   2 KFIMITMLTAMMISMIFAVGVILNNKSMLDKEKSSPFECGFDPGSISRLPFCMKFFLVAVIFLVFDIEVALIIPMPMSF- 80
Cdd:MTH00161   1 MILIILLIILLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFk 80

                         90       100       110
                 ....*....|....*....|....*....|...
gi 902642067  81 --------LSIQIFLMILVSGLFYEWFYGGLDW 105
Cdd:MTH00161  81 tsnmmswlITSSFFILILLLGLYYEWNQGALEW 113
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 7-106 8.45e-22

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 83.01  E-value: 8.45e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902642067   7 TMLTAMMISMIFAVGVILNN----KSMLDKEKSSPFECGFDPGSISRLPFCMKFFLVAVIFLVFDIEVALIIPMPMS--- 79
Cdd:MTH00113   2 NLISMLTISLALSTILTTLNfwltQTKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAinl 81

                         90       100       110
                 ....*....|....*....|....*....|...
gi 902642067  80 ------FLSIQIFLMILVSGLFYEWFYGGLDWM 106
Cdd:MTH00113  82 ttptttLTWATIILTLLTLGLIYEWLQGGLEWA 114
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
31-104 1.72e-20

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 79.00  E-value: 1.72e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902642067   31 DKEKSSPFECGFDPGSISRLPFCMKFFLVAVIFLVFDIEVALIIP--------MPMSFLSIQIFLMILVSGLFYEWFYGG 102
Cdd:pfam00507  13 NPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPwavsfrelGWFGFVEMLIFIAILLVGLVYAWKKGA 92


                  ..
gi 902642067  103 LD 104
Cdd:pfam00507  93 LE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 3-105 7.58e-18

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 72.85  E-value: 7.58e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902642067   3 FIMITMLTAMMISMIFAVGVILNNKSmlDKEKSSPFECGFDPGSISRLPFCMKFFLVAVIFLVFDIEVALIIP------- 75
Cdd:COG0838    9 LIFLLVALGLALAMLLLSRLLGPKRP--NPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPwavvfre 86

                         90       100       110
                 ....*....|....*....|....*....|.
gi 902642067  76 -MPMSFLSIQIFLMILVSGLFYEWFYGGLDW 105
Cdd:COG0838   87 lGWFGLIEMLVFIAILLVGLIYAWKKGALEW 117
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 4-105 1.47e-17

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 72.43  E-value: 1.47e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902642067   4 IMITMLTAMMISMIFAVGVILNNKSMLDKEKSSPFECGFDPGSISRLPFCMKFFLVAVIFLVFDIEVALIIPMPMSFLSI 83
Cdd:MTH00055   8 IFILLLFSIGLSTVISGASYIVGVKQPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPWCVVYNQI 87

                         90       100       110
                 ....*....|....*....|....*....|
gi 902642067  84 Q--------IFLMILVSGLFYEWFYGGLDW 105
Cdd:MTH00055  88 GlfgfwvmyLFLIILTIGLIYEWVKGGLEW 117
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 4-105 9.01e-17

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 70.09  E-value: 9.01e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902642067   4 IMITMLTAMMISMIFAVGVILNNKSMLDKEKSSPFECGFDPGSISRLPFCMKFFLVAVIFLVFDIEVALIIP-------- 75
Cdd:MTH00018   3 LFILLIFSVVLSALFSGASYFLGVKQPDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFPwcvlynqi 82

                         90       100       110
                 ....*....|....*....|....*....|
gi 902642067  76 MPMSFLSIQIFLMILVSGLFYEWFYGGLDW 105
Cdd:MTH00018  83 APFGFWTMVGFLFILTLGLIYEWIKGGLEW 112
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 31-105 2.14e-16

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 69.51  E-value: 2.14e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902642067  31 DKEKSSPFECGFDPGSISRLPFCMKFFLVAVIFLVFDIEVALIIPMPMS--------FLSIQIFLMILVSGLFYEWFYGG 102
Cdd:PRK06602  38 DREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFLFPWAVSfreigwlgFVEAMIFILVLLVGLVYLWRKGA 117


                 ...
gi 902642067 103 LDW 105
Cdd:PRK06602 118 LDW 120
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 12-105 3.37e-16

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 69.19  E-value: 3.37e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902642067  12 MMISMIFAVGVILNNKSMLDKEKSSPFECGFDPGSISRLPFCMKFFLVAVIFLVFDIEVALIIPMPM--------SFLSI 83
Cdd:MTH00030  21 LLVSISFTLGNSRIGLTKPDSEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLFPWSIvfnqlnlfSFWIV 100

                         90       100
                 ....*....|....*....|..
gi 902642067  84 QIFLMILVSGLFYEWFYGGLDW 105
Cdd:MTH00030 101 YTFLIVLAIGLAYEWIKGGLEW 122
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 14-105 1.81e-08

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 48.90  E-value: 1.81e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902642067  14 ISMIFAVGVI----LNNKSMLDKEKSSPFECGFDP--GSISRLPFCMKFFLVAVIFLVFDIEVALIIPMPMSFLSIQIF- 86
Cdd:PRK07928  13 LAAAFAVVSVvvasLVGPKRYNRAKLEAYECGIEPtpQPAGGGRFPVKYYLTAMLFIVFDIEIVFLYPWAVSFDALGVFg 92

                         90       100
                 ....*....|....*....|....*..
gi 902642067  87 --------LMILVSGLfYEWFYGGLDW 105
Cdd:PRK07928  93 lvemalfmLTVFVAYA-YVWRRGGLEW 118
ndhC CHL00022
NADH dehydrogenase subunit 3
 33-105 6.74e-08

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 47.29  E-value: 6.74e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902642067  33 EKSSPFECGFDPGSISRLPFCMKFFLVAVIFLVFDIEVALIIPMPMSF--------LSIQIFLMILVSGLFYEWFYGGLD 104
Cdd:CHL00022  39 EKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFdvlgvsafIEALIFVLILIVGLVYAWRKGALE 118


                 .
gi 902642067 105 W 105
Cdd:CHL00022 119 W 119
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
31-106 1.34e-05

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 41.27  E-value: 1.34e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902642067  31 DKEKSSPFECGFDPGSISRLPFCMKFFLVAVIFLVFDIEVALIIPMPMSF--------LSIQIFLMILVSGLFYEWFYGG 102
Cdd:PRK07756  39 SAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYPWAVAYdklglfalIEMLIFVVMLLVGLAYAWKKKV 118


                 ....
gi 902642067 103 LDWM 106
Cdd:PRK07756 119 LQWL 122
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
 17-106 1.68e-04

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 38.34  E-value: 1.68e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902642067  17 IFAVGVILNNKSMLDKEKSSPFECGFDPGSISRLPFCMKFFLVAVIFLVFDIEVALIIPMPM------SFLSIQIFLMIL 90
Cdd:MTH00060  20 FFHSGLWNNKIYSGGFSWVSSFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLLNMPFqgllfyNFWYYYFFLLLL 99

                         90
                 ....*....|....*.
gi 902642067  91 VSGLFYEWFYGGLDWM 106
Cdd:MTH00060 100 FLGFVVELFSGYVRWV 115
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 5-106 6.61e-04

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 36.41  E-value: 6.61e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902642067   5 MITMLTAMMISMIFAVGVILNNKSMLDKE----KSSPFECGFDPGSISRLPFCMKFFLVAVIFLVFDIEV----ALIIPM 76
Cdd:MTH00092   1 MLVLIFVFLFTLLLLMLLYLLNFFLSVKKfdllKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIvmflGLLVSD 80

                         90       100       110
                 ....*....|....*....|....*....|
gi 902642067  77 PMSFLSIQIFLMILVSGLFYEWFYGGLDWM 106
Cdd:MTH00092  81 FSSLISFFMLMIFIFFGFYMEWWYGKLIWV 110
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
31-109 1.92e-03

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 35.80  E-value: 1.92e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902642067  31 DKEKSSPFECG----FDPGSISrlpfcMKFFLVAVIFLVFDIEVALIIPMPMSF--------LSIQIFLMILVSGLFYEW 98
Cdd:PRK08489  44 EKLKLAIYECGpepvKQPNRIS-----SHFYIMALLFILFDVEIVFMFPWAVDFkllglfglIEMLLFIVLLTIGFIYAW 118

                         90
                 ....*....|.
gi 902642067  99 FYGGLDWMKSK 109
Cdd:PRK08489 119 KKGALEWQSIK 129
PRK06432 PRK06432
NADH dehydrogenase subunit A; Validated
 25-107 4.01e-03

NADH dehydrogenase subunit A; Validated


Pssm-ID: 102372  Cd Length: 144  Bit Score: 34.79  E-value: 4.01e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902642067  25 NNKSMLDKEKSSPFECGFDPGSISRLPFCMKFFLVAVIFLVFDIEVALIIPMPMSFLSIQ--------IFLMILVSGLFY 96
Cdd:PRK06432  54 DTPPGSDQSYLEPYESGEVAREIWGGPSINQYYIVVLLFVVFDVDMLLLFPWAFDFKRLGlipfietlIFLAMPLFAVYY 133

                         90
                 ....*....|.
gi 902642067  97 EWFYGGLDWMK 107
Cdd:PRK06432 134 AFKMGYMRWLK 144
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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