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Conserved domains on  [gi|896394379|ref|WP_049333459|]
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MULTISPECIES: Lsr2 family protein [Rothia]

Protein Classification

Lsr2 family protein( domain architecture ID 10570331)

Lsr2 family protein similar to Mycobacterium nucleoid-associated protein Lsr2, which is a DNA-bridging protein that has both architectural and regulatory roles

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Lsr2 pfam11774
Lsr2; Lsr2 is a small, basic DNA-bridging protein present in Mycobacterium and related ...
 1-111 4.07e-49

Lsr2; Lsr2 is a small, basic DNA-bridging protein present in Mycobacterium and related actinomycetes. It is a functional homolog of the H-NS-like proteins. H-NS proteins play a role in nucleoid organization and also function as a pleiotropic regulator of gene expression.


:

Pssm-ID: 432065 [Multi-domain]  Cd Length: 109  Bit Score: 151.91  E-value: 4.07e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896394379    1 MAQKVRIILEDDLDGGPADETIRFGLDGAHYEIDLSSANAARLRDAIRPFVAKSRRVQGSAQRTRAPRGTAAPVKrnPET 80
Cdd:pfam11774   1 MAQKVTVTLVDDLDGSEADETVEFGLDGVDYEIDLSAANAAKLRDALAPYVAAARRVGGRKRRGARRASRSAADR--EDT 78

                          90       100       110
                  ....*....|....*....|....*....|.
gi 896394379   81 AAIREWAKANGHKVSDRGRIHQDIQDAYYAA 111
Cdd:pfam11774  79 AAIREWARENGYEVSDRGRIPAEVVEAYEAA 109
 
Name Accession Description Interval E-value
Lsr2 pfam11774
Lsr2; Lsr2 is a small, basic DNA-bridging protein present in Mycobacterium and related ...
 1-111 4.07e-49

Lsr2; Lsr2 is a small, basic DNA-bridging protein present in Mycobacterium and related actinomycetes. It is a functional homolog of the H-NS-like proteins. H-NS proteins play a role in nucleoid organization and also function as a pleiotropic regulator of gene expression.


Pssm-ID: 432065 [Multi-domain]  Cd Length: 109  Bit Score: 151.91  E-value: 4.07e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896394379    1 MAQKVRIILEDDLDGGPADETIRFGLDGAHYEIDLSSANAARLRDAIRPFVAKSRRVQGSAQRTRAPRGTAAPVKrnPET 80
Cdd:pfam11774   1 MAQKVTVTLVDDLDGSEADETVEFGLDGVDYEIDLSAANAAKLRDALAPYVAAARRVGGRKRRGARRASRSAADR--EDT 78

                          90       100       110
                  ....*....|....*....|....*....|.
gi 896394379   81 AAIREWAKANGHKVSDRGRIHQDIQDAYYAA 111
Cdd:pfam11774  79 AAIREWARENGYEVSDRGRIPAEVVEAYEAA 109
 
Name Accession Description Interval E-value
Lsr2 pfam11774
Lsr2; Lsr2 is a small, basic DNA-bridging protein present in Mycobacterium and related ...
 1-111 4.07e-49

Lsr2; Lsr2 is a small, basic DNA-bridging protein present in Mycobacterium and related actinomycetes. It is a functional homolog of the H-NS-like proteins. H-NS proteins play a role in nucleoid organization and also function as a pleiotropic regulator of gene expression.


Pssm-ID: 432065 [Multi-domain]  Cd Length: 109  Bit Score: 151.91  E-value: 4.07e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896394379    1 MAQKVRIILEDDLDGGPADETIRFGLDGAHYEIDLSSANAARLRDAIRPFVAKSRRVQGSAQRTRAPRGTAAPVKrnPET 80
Cdd:pfam11774   1 MAQKVTVTLVDDLDGSEADETVEFGLDGVDYEIDLSAANAAKLRDALAPYVAAARRVGGRKRRGARRASRSAADR--EDT 78

                          90       100       110
                  ....*....|....*....|....*....|.
gi 896394379   81 AAIREWAKANGHKVSDRGRIHQDIQDAYYAA 111
Cdd:pfam11774  79 AAIREWARENGYEVSDRGRIPAEVVEAYEAA 109
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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