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Conserved domains on  [gi|893657811|gb|AKQ86734|]
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cytochrome oxidase subunit 1, partial (mitochondrion) [Platygastridae sp. BOLD:AAU8922]

Protein Classification

heme-copper oxidase family protein( domain architecture ID 14)

heme-copper oxidase family protein may catalyze the transfer of electrons from an electron donor onto molecular oxygen

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Heme_Cu_Oxidase_I super family cl00275
Heme-copper oxidase subunit I. Heme-copper oxidases are transmembrane protein complexes in ...
 1-189 3.24e-100

Heme-copper oxidase subunit I. Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which catalyze the reduction of O2 and simultaneously pump protons across the membrane. The superfamily is diverse in terms of electron donors, subunit composition, and heme types. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. It has been proposed that Archaea acquired heme-copper oxidases through gene transfer from Gram-positive bacteria. Membership in the superfamily is defined by subunit I, which contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme and a copper ion. It also contains a low-spin heme, believed to participate in the transfer of electrons to the binuclear center. Only subunit I is common to the entire superfamily. For every reduction of an O2 molecule, eight protons are taken from the inside aqueous compartment and four electrons are taken from the electron donor on the opposite side of the membrane. The four electrons and four of the protons are used in the reduction of O2; the four remaining protons are pumped across the membrane. This charge separation of four charges contributes to the electrochemical gradient used for ATP synthesis. Two proton channels, the D-pathway and K-pathway, leading to the binuclear center have been identified in subunit I of cytochrome c oxidase (CcO) and ubiquinol oxidase. A well-defined pathway for the transfer of pumped protons beyond the binuclear center has not been identified. Electron transfer occurs in two segments: from the electron donor to the low-spin heme, and from the low-spin heme to the binuclear center. The first segment can be a multi-step process and varies among the different families, while the second segment, a direct transfer, is consistent throughout the superfamily.


The actual alignment was detected with superfamily member MTH00153:

Pssm-ID: 469701  Cd Length: 511  Bit Score: 298.32  E-value: 3.24e-100
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893657811   1 IFGIWAGMLGSSMSMMIRMELSSPGMLIGNDQIYNSIVTSHAFVMIFFMVMPIMMGGFGNWLIPLMINAPDMAFPRLNNM 80
Cdd:MTH00153  19 IFGAWSGMVGTSLSLLIRAELGQPGSLIGDDQIYNVIVTAHAFIMIFFMVMPIMIGGFGNWLVPLMLGAPDMAFPRMNNM 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893657811  81 SFWLLPPSLIMLIYSNIFGMGTGTGWTVYPPLSSQQ---NPSIDLTIFSLHLAGISSILSSINFLCTIMNMKTFKFYMYN 157
Cdd:MTH00153  99 SFWLLPPSLTLLLSSSMVESGAGTGWTVYPPLSSNIahsGASVDLAIFSLHLAGISSILGAINFITTIINMRSKGMTLDR 178

                        170       180       190
                 ....*....|....*....|....*....|..
gi 893657811 158 LSLFTWSVFITTILLLLSLPVLAGAITMLLSD 189
Cdd:MTH00153 179 MPLFVWSVLITAILLLLSLPVLAGAITMLLTD 210
 
Name Accession Description Interval E-value
COX1 MTH00153
cytochrome c oxidase subunit I; Provisional
 1-189 3.24e-100

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 177210  Cd Length: 511  Bit Score: 298.32  E-value: 3.24e-100
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893657811   1 IFGIWAGMLGSSMSMMIRMELSSPGMLIGNDQIYNSIVTSHAFVMIFFMVMPIMMGGFGNWLIPLMINAPDMAFPRLNNM 80
Cdd:MTH00153  19 IFGAWSGMVGTSLSLLIRAELGQPGSLIGDDQIYNVIVTAHAFIMIFFMVMPIMIGGFGNWLVPLMLGAPDMAFPRMNNM 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893657811  81 SFWLLPPSLIMLIYSNIFGMGTGTGWTVYPPLSSQQ---NPSIDLTIFSLHLAGISSILSSINFLCTIMNMKTFKFYMYN 157
Cdd:MTH00153  99 SFWLLPPSLTLLLSSSMVESGAGTGWTVYPPLSSNIahsGASVDLAIFSLHLAGISSILGAINFITTIINMRSKGMTLDR 178

                        170       180       190
                 ....*....|....*....|....*....|..
gi 893657811 158 LSLFTWSVFITTILLLLSLPVLAGAITMLLSD 189
Cdd:MTH00153 179 MPLFVWSVLITAILLLLSLPVLAGAITMLLTD 210
Cyt_c_Oxidase_I cd01663
Cytochrome C oxidase subunit I. Cytochrome c oxidase (CcO), the terminal oxidase in the ...
 1-189 5.10e-97

Cytochrome C oxidase subunit I. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Only subunits I and II are essential for function, but subunit III, which is also conserved, may play a role in assembly or oxygen delivery to the active site. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme (heme a3) and a copper ion (CuB). It also contains a low-spin heme (heme a), believed to participate in the transfer of electrons to the binuclear center. For every reduction of an O2 molecule, eight protons are taken from the inside aqueous compartment and four electrons are taken from cytochrome c on the opposite side of the membrane. The four electrons and four of the protons are used in the reduction of O2; the four remaining protons are pumped across the membrane. This charge separation of four charges contributes to the electrochemical gradient used for ATP synthesis. Two proton channels, the D-pathway and K-pathway, leading to the binuclear center have been identified in subunit I. A well-defined pathway for the transfer of pumped protons beyond the binuclear center has not been identified. Electrons are transferred from cytochrome c (the electron donor) to heme a via the CuA binuclear site in subunit II, and directly from heme a to the binuclear center.


Pssm-ID: 238833  Cd Length: 488  Bit Score: 289.38  E-value: 5.10e-97
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893657811   1 IFGIWAGMLGSSMSMMIRMELSSPGMLIGNDQIYNSIVTSHAFVMIFFMVMPIMMGGFGNWLIPLMINAPDMAFPRLNNM 80
Cdd:cd01663   12 IFGLWSGLVGTSLSLLIRLELSQPGSQLGNDQLYNVIVTAHALIMIFFMVMPALIGGFGNWLVPLMIGAPDMAFPRLNNL 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893657811  81 SFWLLPPSLIMLIYSNIFGMGTGTGWTVYPPLSSQQ---NPSIDLTIFSLHLAGISSILSSINFLCTIMNMKTFKFYMYN 157
Cdd:cd01663   92 SFWLLPPSLLLLLLSALVEGGAGTGWTVYPPLSSILahsGPSVDLAIFSLHLAGISSILGAINFITTIFNMRAPGMTLEK 171

                        170       180       190
                 ....*....|....*....|....*....|..
gi 893657811 158 LSLFTWSVFITTILLLLSLPVLAGAITMLLSD 189
Cdd:cd01663  172 MPLFVWSVLITAFLLLLSLPVLAGAITMLLTD 203
CyoB COG0843
Heme/copper-type cytochrome/quinol oxidase, subunit 1 [Energy production and conversion];
1-189 7.81e-48

Heme/copper-type cytochrome/quinol oxidase, subunit 1 [Energy production and conversion];


Pssm-ID: 440605  Cd Length: 535  Bit Score: 162.99  E-value: 7.81e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893657811   1 IFGIWAGMLGSSMSMMIRMELSSPGMLIGNDQIYNSIVTSHAFVMIFFMVMPiMMGGFGNWLIPLMINAPDMAFPRLNNM 80
Cdd:COG0843   24 VTAFVFLLIGGLLALLMRLQLAGPGLGLLSPETYNQLFTMHGTIMIFFFATP-FLAGFGNYLVPLQIGARDMAFPRLNAL 102

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893657811  81 SFWLLPPSLIMLIYSNIFGMGTGTGWTVYPPLSSQQ---NPSIDLTIFSLHLAGISSILSSINFLCTIMNMKTFKFYMYN 157
Cdd:COG0843  103 SFWLYLFGGLLLLISLFVGGAADVGWTFYPPLSGLEaspGVGVDLWLLGLALFGVGSILGGVNFIVTILKMRAPGMTLMR 182

                        170       180       190
                 ....*....|....*....|....*....|..
gi 893657811 158 LSLFTWSVFITTILLLLSLPVLAGAITMLLSD 189
Cdd:COG0843  183 MPLFTWAALVTSILILLAFPVLAAALLLLLLD 214
COX1 pfam00115
Cytochrome C and Quinol oxidase polypeptide I; Cytochrome c oxidase (E.C:7.1.1.9) is a key ...
 1-189 1.82e-33

Cytochrome C and Quinol oxidase polypeptide I; Cytochrome c oxidase (E.C:7.1.1.9) is a key enzyme in aerobic metabolism. Proton pumping haem-copper oxidases represent the terminal, energy-transfer enzymes of respiratory chains in prokaryotes and eukaryotes. The CuB-haem a3 (or haem o) binuclear centre, associated with the largest subunit I of cytochrome c and ubiquinol oxidases (E.C:1.10.3.11), is directly involved in the coupling between dioxygen reduction and proton pumping. Some terminal oxidases generate a transmembrane proton gradient across the plasma membrane (prokaryotes) or the mitochondrial inner membrane (eukaryotes). The enzyme complex consists of 3-4 subunits (prokaryotes) up to 13 polypeptides (mammals) of which only the catalytic subunit (equivalent to mammalian subunit I (COXI) is found in all haem-copper respiratory oxidases. The presence of a bimetallic centre (formed by a high-spin haem and copper B) as well as a low-spin haem, both ligated to six conserved histidine residues near the outer side of four transmembrane spans within CO I is common to all family members.


Pssm-ID: 459678  Cd Length: 432  Bit Score: 123.07  E-value: 1.82e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893657811    1 IFGIWAGMLGSSMSMMIRMELSSPGMLIGNDQIYNSIVTSHAFVMIFFMVMPIMMGgFGNWLIPLMINAPDMAFPRLNNM 80
Cdd:pfam00115   8 VTALVWFLVGGLLGLLIRLQLAFPGLNFLSPLTYNQLRTLHGNLMIFWFATPFLFG-FGNYLVPLMIGARDMAFPRLNAL 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893657811   81 SFWLLPPSLIMLIYSnifGMGTGTGWTVYPPLssqqnPSIDLTIFSLHLAGISSILSSINFLCTIMNMKTfKFYMYNLSL 160
Cdd:pfam00115  87 SFWLVVLGAVLLLAS---FGGATTGWTEYPPL-----VGVDLWYIGLLLAGVSSLLGAINFIVTILKRRA-PGMTLRMPL 157

                         170       180
                  ....*....|....*....|....*....
gi 893657811  161 FTWSVFITTILLLLSLPVLAGAITMLLSD 189
Cdd:pfam00115 158 FVWAILATAILILLAFPVLAAALLLLLLD 186
QoxB TIGR02882
cytochrome aa3 quinol oxidase, subunit I; This family (QoxB) encodes subunit I of the aa3-type ...
 10-189 2.66e-27

cytochrome aa3 quinol oxidase, subunit I; This family (QoxB) encodes subunit I of the aa3-type quinone oxidase, one of several bacterial terminal oxidases. This complex couples oxidation of reduced quinones with the reduction of molecular oxygen to water and the pumping of protons to form a proton gradient utilized for ATP production. aa3-type oxidases contain two heme a cofactors as well as copper atoms in the active site. [Energy metabolism, Electron transport]


Pssm-ID: 131928  Cd Length: 643  Bit Score: 107.63  E-value: 2.66e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893657811   10 GSSMSMMIRMELSSPGMLIGNDQIYNSIVTSHAFVMIFFMVMPIMMGgFGNWLIPLMINAPDMAFPRLNNMSFWLLPPSL 89
Cdd:TIGR02882  68 GGIDALLMRAQLTVPDNKFLDAQHYNEIFTTHGVIMIIFMAMPFIIG-LMNIVVPLQIGARDVAFPVLNALSFWLFFAGA 146

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893657811   90 IMLIYSNIFGMGTGTGWTVYPPLSSQQ---NPSIDLTIFSLHLAGISSILSSINFLCTIMNMKTFKFYMYNLSLFTWSVF 166
Cdd:TIGR02882 147 MLFNISFVIGGSPDAGWTNYAPLAGPEfspGVGVNYYLIALQISGIGTLMTGINFFVTILKMRAPGMKLMQMPMFTWTTL 226

                         170       180
                  ....*....|....*....|...
gi 893657811  167 ITTILLLLSLPVLAGAITMLLSD 189
Cdd:TIGR02882 227 ITTLIIIFAFPVLTVALALMTTD 249
 
Name Accession Description Interval E-value
COX1 MTH00153
cytochrome c oxidase subunit I; Provisional
 1-189 3.24e-100

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 177210  Cd Length: 511  Bit Score: 298.32  E-value: 3.24e-100
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893657811   1 IFGIWAGMLGSSMSMMIRMELSSPGMLIGNDQIYNSIVTSHAFVMIFFMVMPIMMGGFGNWLIPLMINAPDMAFPRLNNM 80
Cdd:MTH00153  19 IFGAWSGMVGTSLSLLIRAELGQPGSLIGDDQIYNVIVTAHAFIMIFFMVMPIMIGGFGNWLVPLMLGAPDMAFPRMNNM 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893657811  81 SFWLLPPSLIMLIYSNIFGMGTGTGWTVYPPLSSQQ---NPSIDLTIFSLHLAGISSILSSINFLCTIMNMKTFKFYMYN 157
Cdd:MTH00153  99 SFWLLPPSLTLLLSSSMVESGAGTGWTVYPPLSSNIahsGASVDLAIFSLHLAGISSILGAINFITTIINMRSKGMTLDR 178

                        170       180       190
                 ....*....|....*....|....*....|..
gi 893657811 158 LSLFTWSVFITTILLLLSLPVLAGAITMLLSD 189
Cdd:MTH00153 179 MPLFVWSVLITAILLLLSLPVLAGAITMLLTD 210
Cyt_c_Oxidase_I cd01663
Cytochrome C oxidase subunit I. Cytochrome c oxidase (CcO), the terminal oxidase in the ...
 1-189 5.10e-97

Cytochrome C oxidase subunit I. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Only subunits I and II are essential for function, but subunit III, which is also conserved, may play a role in assembly or oxygen delivery to the active site. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme (heme a3) and a copper ion (CuB). It also contains a low-spin heme (heme a), believed to participate in the transfer of electrons to the binuclear center. For every reduction of an O2 molecule, eight protons are taken from the inside aqueous compartment and four electrons are taken from cytochrome c on the opposite side of the membrane. The four electrons and four of the protons are used in the reduction of O2; the four remaining protons are pumped across the membrane. This charge separation of four charges contributes to the electrochemical gradient used for ATP synthesis. Two proton channels, the D-pathway and K-pathway, leading to the binuclear center have been identified in subunit I. A well-defined pathway for the transfer of pumped protons beyond the binuclear center has not been identified. Electrons are transferred from cytochrome c (the electron donor) to heme a via the CuA binuclear site in subunit II, and directly from heme a to the binuclear center.


Pssm-ID: 238833  Cd Length: 488  Bit Score: 289.38  E-value: 5.10e-97
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893657811   1 IFGIWAGMLGSSMSMMIRMELSSPGMLIGNDQIYNSIVTSHAFVMIFFMVMPIMMGGFGNWLIPLMINAPDMAFPRLNNM 80
Cdd:cd01663   12 IFGLWSGLVGTSLSLLIRLELSQPGSQLGNDQLYNVIVTAHALIMIFFMVMPALIGGFGNWLVPLMIGAPDMAFPRLNNL 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893657811  81 SFWLLPPSLIMLIYSNIFGMGTGTGWTVYPPLSSQQ---NPSIDLTIFSLHLAGISSILSSINFLCTIMNMKTFKFYMYN 157
Cdd:cd01663   92 SFWLLPPSLLLLLLSALVEGGAGTGWTVYPPLSSILahsGPSVDLAIFSLHLAGISSILGAINFITTIFNMRAPGMTLEK 171

                        170       180       190
                 ....*....|....*....|....*....|..
gi 893657811 158 LSLFTWSVFITTILLLLSLPVLAGAITMLLSD 189
Cdd:cd01663  172 MPLFVWSVLITAFLLLLSLPVLAGAITMLLTD 203
COX1 MTH00167
cytochrome c oxidase subunit I; Provisional
 1-189 2.81e-92

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 177222  Cd Length: 512  Bit Score: 278.10  E-value: 2.81e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893657811   1 IFGIWAGMLGSSMSMMIRMELSSPGMLIGNDQIYNSIVTSHAFVMIFFMVMPIMMGGFGNWLIPLMINAPDMAFPRLNNM 80
Cdd:MTH00167  21 IFGAWAGMVGTALSLLIRAELSQPGSLLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNM 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893657811  81 SFWLLPPSLIMLIYSNIFGMGTGTGWTVYPPLSS---QQNPSIDLTIFSLHLAGISSILSSINFLCTIMNMKTFKFYMYN 157
Cdd:MTH00167 101 SFWLLPPSLLLLLASSGVEAGAGTGWTVYPPLAGnlaHAGASVDLAIFSLHLAGVSSILGSINFITTIINMKPPGITQYQ 180

                        170       180       190
                 ....*....|....*....|....*....|..
gi 893657811 158 LSLFTWSVFITTILLLLSLPVLAGAITMLLSD 189
Cdd:MTH00167 181 TPLFVWSILVTTILLLLSLPVLAAAITMLLTD 212
COX1 MTH00116
cytochrome c oxidase subunit I; Provisional
 1-189 5.51e-87

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 177177  Cd Length: 515  Bit Score: 264.65  E-value: 5.51e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893657811   1 IFGIWAGMLGSSMSMMIRMELSSPGMLIGNDQIYNSIVTSHAFVMIFFMVMPIMMGGFGNWLIPLMINAPDMAFPRLNNM 80
Cdd:MTH00116  21 IFGAWAGMVGTALSLLIRAELGQPGTLLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNM 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893657811  81 SFWLLPPSLIMLIYSNIFGMGTGTGWTVYPPLSS---QQNPSIDLTIFSLHLAGISSILSSINFLCTIMNMKTFKFYMYN 157
Cdd:MTH00116 101 SFWLLPPSFLLLLASSTVEAGAGTGWTVYPPLAGnlaHAGASVDLAIFSLHLAGVSSILGAINFITTCINMKPPAMSQYQ 180

                        170       180       190
                 ....*....|....*....|....*....|..
gi 893657811 158 LSLFTWSVFITTILLLLSLPVLAGAITMLLSD 189
Cdd:MTH00116 181 TPLFVWSVLITAVLLLLSLPVLAAGITMLLTD 212
COX1 MTH00142
cytochrome c oxidase subunit I; Provisional
 1-189 1.08e-84

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 214431  Cd Length: 511  Bit Score: 258.50  E-value: 1.08e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893657811   1 IFGIWAGMLGSSMSMMIRMELSSPGMLIGNDQIYNSIVTSHAFVMIFFMVMPIMMGGFGNWLIPLMINAPDMAFPRLNNM 80
Cdd:MTH00142  19 LFGAWAGMVGTGLSLLIRAELGQPGSLLGDDQLYNVIVTAHAFVMIFFMVMPVMIGGFGNWLVPLMLGAPDMAFPRMNNM 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893657811  81 SFWLLPPSLIMLIYSNIFGMGTGTGWTVYPPLSS---QQNPSIDLTIFSLHLAGISSILSSINFLCTIMNMKTFKFYMYN 157
Cdd:MTH00142  99 SFWLLPPALLLLLSSAAVESGAGTGWTVYPPLSSnlaHSGGSVDLAIFSLHLAGVSSILGAINFITTVINMRAGGMKFER 178

                        170       180       190
                 ....*....|....*....|....*....|..
gi 893657811 158 LSLFTWSVFITTILLLLSLPVLAGAITMLLSD 189
Cdd:MTH00142 179 VPLFVWSVKITAILLLLSLPVLAGAITMLLTD 210
COX1 MTH00223
cytochrome c oxidase subunit I; Provisional
 1-189 7.42e-84

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 177260  Cd Length: 512  Bit Score: 256.44  E-value: 7.42e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893657811   1 IFGIWAGMLGSSMSMMIRMELSSPGMLIGNDQIYNSIVTSHAFVMIFFMVMPIMMGGFGNWLIPLMINAPDMAFPRLNNM 80
Cdd:MTH00223  18 IFGMWSGLVGTSLSLLIRAELGQPGALLGDDQLYNVIVTAHAFVMIFFLVMPMMIGGFGNWLVPLMLGAPDMAFPRLNNM 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893657811  81 SFWLLPPSLIMLIYSNIFGMGTGTGWTVYPPLSS---QQNPSIDLTIFSLHLAGISSILSSINFLCTIMNMKTFKFYMYN 157
Cdd:MTH00223  98 SFWLLPPSLYLLLSSSAVESGVGTGWTVYPPLSSnlaHAGPSVDLAIFSLHLAGVSSILGAINFITTIINMRSPGMQLER 177

                        170       180       190
                 ....*....|....*....|....*....|..
gi 893657811 158 LSLFTWSVFITTILLLLSLPVLAGAITMLLSD 189
Cdd:MTH00223 178 LPLFVWSVKVTAFLLLLSLPVLAGAITMLLTD 209
COX1 MTH00183
cytochrome c oxidase subunit I; Provisional
 1-189 1.62e-76

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 177234  Cd Length: 516  Bit Score: 237.90  E-value: 1.62e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893657811   1 IFGIWAGMLGSSMSMMIRMELSSPGMLIGNDQIYNSIVTSHAFVMIFFMVMPIMMGGFGNWLIPLMINAPDMAFPRLNNM 80
Cdd:MTH00183  21 VFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLIPLMIGAPDMAFPRMNNM 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893657811  81 SFWLLPPSLIMLIYSNIFGMGTGTGWTVYPPLS---SQQNPSIDLTIFSLHLAGISSILSSINFLCTIMNMKTFKFYMYN 157
Cdd:MTH00183 101 SFWLLPPSFLLLLASSGVEAGAGTGWTVYPPLAgnlAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAISQYQ 180

                        170       180       190
                 ....*....|....*....|....*....|..
gi 893657811 158 LSLFTWSVFITTILLLLSLPVLAGAITMLLSD 189
Cdd:MTH00183 181 TPLFVWAVLITAVLLLLSLPVLAAGITMLLTD 212
COX1 MTH00077
cytochrome c oxidase subunit I; Provisional
 1-189 2.13e-76

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 214419  Cd Length: 514  Bit Score: 237.53  E-value: 2.13e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893657811   1 IFGIWAGMLGSSMSMMIRMELSSPGMLIGNDQIYNSIVTSHAFVMIFFMVMPIMMGGFGNWLIPLMINAPDMAFPRLNNM 80
Cdd:MTH00077  21 VFGAWAGMVGTALSLLIRAELSQPGTLLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNM 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893657811  81 SFWLLPPSLIMLIYSNIFGMGTGTGWTVYPPLS---SQQNPSIDLTIFSLHLAGISSILSSINFLCTIMNMKTFKFYMYN 157
Cdd:MTH00077 101 SFWLLPPSFLLLLASSGVEAGAGTGWTVYPPLAgnlAHAGASVDLTIFSLHLAGVSSILGAINFITTSINMKPPSMSQYQ 180

                        170       180       190
                 ....*....|....*....|....*....|..
gi 893657811 158 LSLFTWSVFITTILLLLSLPVLAGAITMLLSD 189
Cdd:MTH00077 181 TPLFVWSVLITAVLLLLSLPVLAAGITMLLTD 212
COX1 MTH00007
cytochrome c oxidase subunit I; Validated
 1-189 8.30e-76

cytochrome c oxidase subunit I; Validated


Pssm-ID: 133649  Cd Length: 511  Bit Score: 235.95  E-value: 8.30e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893657811   1 IFGIWAGMLGSSMSMMIRMELSSPGMLIGNDQIYNSIVTSHAFVMIFFMVMPIMMGGFGNWLIPLMINAPDMAFPRLNNM 80
Cdd:MTH00007  18 ILGVWGGLLGTSMSLLIRIELGQPGAFLGSDQLYNTIVTAHAFLMIFFLVMPVFIGGFGNWLVPLMLGAPDMAFPRLNNM 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893657811  81 SFWLLPPSLIMLIYSNIFGMGTGTGWTVYPPLSS---QQNPSIDLTIFSLHLAGISSILSSINFLCTIMNMKTFKFYMYN 157
Cdd:MTH00007  98 SFWLLPPALILLVSSAAVEKGVGTGWTVYPPLASnlaHAGPSVDLAIFSLHLAGVSSILGAINFITTVINMRWKGLRLER 177

                        170       180       190
                 ....*....|....*....|....*....|..
gi 893657811 158 LSLFTWSVFITTILLLLSLPVLAGAITMLLSD 189
Cdd:MTH00007 178 IPLFVWAVVITVVLLLLSLPVLAGAITMLLTD 209
COX1 MTH00037
cytochrome c oxidase subunit I; Provisional
 1-189 1.51e-75

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 177112  Cd Length: 517  Bit Score: 235.11  E-value: 1.51e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893657811   1 IFGIWAGMLGSSMSMMIRMELSSPGMLIGNDQIYNSIVTSHAFVMIFFMVMPIMMGGFGNWLIPLMINAPDMAFPRLNNM 80
Cdd:MTH00037  21 IFGAWAGMVGTAMSVIIRTELAQPGSLLQDDQIYNVIVTAHALVMIFFMVMPIMIGGFGNWLIPLMIGAPDMAFPRMNNM 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893657811  81 SFWLLPPSLIMLIYSNIFGMGTGTGWTVYPPLSS---QQNPSIDLTIFSLHLAGISSILSSINFLCTIMNMKTFKFYMYN 157
Cdd:MTH00037 101 SFWLIPPSFLLLLASAGVESGAGTGWTIYPPLSSniaHAGGSVDLAIFSLHLAGASSILASINFITTIINMRTPGMTFDR 180

                        170       180       190
                 ....*....|....*....|....*....|..
gi 893657811 158 LSLFTWSVFITTILLLLSLPVLAGAITMLLSD 189
Cdd:MTH00037 181 LPLFVWSVFITAFLLLLSLPVLAGAITMLLTD 212
COX1 MTH00103
cytochrome c oxidase subunit I; Validated
 1-189 2.40e-75

cytochrome c oxidase subunit I; Validated


Pssm-ID: 177165  Cd Length: 513  Bit Score: 234.78  E-value: 2.40e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893657811   1 IFGIWAGMLGSSMSMMIRMELSSPGMLIGNDQIYNSIVTSHAFVMIFFMVMPIMMGGFGNWLIPLMINAPDMAFPRLNNM 80
Cdd:MTH00103  21 LFGAWAGMVGTALSLLIRAELGQPGTLLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNM 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893657811  81 SFWLLPPSLIMLIYSNIFGMGTGTGWTVYPPLS---SQQNPSIDLTIFSLHLAGISSILSSINFLCTIMNMKTFKFYMYN 157
Cdd:MTH00103 101 SFWLLPPSFLLLLASSMVEAGAGTGWTVYPPLAgnlAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMSQYQ 180

                        170       180       190
                 ....*....|....*....|....*....|..
gi 893657811 158 LSLFTWSVFITTILLLLSLPVLAGAITMLLSD 189
Cdd:MTH00103 181 TPLFVWSVLITAVLLLLSLPVLAAGITMLLTD 212
COX1 MTH00079
cytochrome c oxidase subunit I; Provisional
 1-189 4.56e-72

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 177148  Cd Length: 508  Bit Score: 226.10  E-value: 4.56e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893657811   1 IFGIWAGMLGSSMSMMIRMELSSPGMLIGNDQIYNSIVTSHAFVMIFFMVMPIMMGGFGNWLIPLMINAPDMAFPRLNNM 80
Cdd:MTH00079  22 LFGLWSGMVGTSLSLIIRLELSKPGLLLGNGQLYNSVITAHAILMIFFMVMPSMIGGFGNWMLPLMLGAPDMSFPRLNNL 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893657811  81 SFWLLPPSLIMLIYSNIFGMGTGTGWTVYPPLSSQQNP--SIDLTIFSLHLAGISSILSSINFLCTIMNMKTFKFYMYNL 158
Cdd:MTH00079 102 SFWLLPTSLFLILDSCFVDMGPGTSWTVYPPLSTLGHPgsSVDLAIFSLHCAGISSILGGINFMVTTKNLRSSSISLEHM 181

                        170       180       190
                 ....*....|....*....|....*....|.
gi 893657811 159 SLFTWSVFITTILLLLSLPVLAGAITMLLSD 189
Cdd:MTH00079 182 SLFVWTVFVTVFLLVLSLPVLAGAITMLLTD 212
COX1 MTH00184
cytochrome c oxidase subunit I; Provisional
 1-189 2.56e-71

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 177235  Cd Length: 519  Bit Score: 224.32  E-value: 2.56e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893657811   1 IFGIWAGMLGSSMSMMIRMELSSPGMLIGNDQIYNSIVTSHAFVMIFFMVMPIMMGGFGNWLIPLMINAPDMAFPRLNNM 80
Cdd:MTH00184  23 LFGAFAGMIGTAFSMLIRLELSAPGSMLGDDHLYNVIVTAHAFVMIFFLVMPVMIGGFGNWFVPLYIGAPDMAFPRLNNI 102

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893657811  81 SFWLLPPSLIMLIYSNIFGMGTGTGWTVYPPLSSQQ---NPSIDLTIFSLHLAGISSILSSINFLCTIMNMKTFKFYMYN 157
Cdd:MTH00184 103 SFWLLPPALTLLLGSAFVEQGAGTGWTVYPPLSSIQahsGGSVDMAIFSLHLAGISSILGAMNFITTIFNMRAPGITMDR 182

                        170       180       190
                 ....*....|....*....|....*....|..
gi 893657811 158 LSLFTWSVFITTILLLLSLPVLAGAITMLLSD 189
Cdd:MTH00184 183 MPLFVWSILVTTFLLLLSLPVLAGAITMLLTD 214
COX1 MTH00182
cytochrome c oxidase subunit I; Provisional
 1-189 8.50e-71

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 214451  Cd Length: 525  Bit Score: 223.16  E-value: 8.50e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893657811   1 IFGIWAGMLGSSMSMMIRMELSSPGMLIGNDQIYNSIVTSHAFVMIFFMVMPIMMGGFGNWLIPLMINAPDMAFPRLNNM 80
Cdd:MTH00182  23 VFGAGAGMIGTAFSMLIRLELSAPGAMLGDDHLYNVIVTAHAFIMIFFLVMPVMIGGFGNWLVPLYIGAPDMAFPRLNNI 102

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893657811  81 SFWLLPPSLIMLIYSNIFGMGTGTGWTVYPPLSSQQNPS---IDLTIFSLHLAGISSILSSINFLCTIMNMKTFKFYMYN 157
Cdd:MTH00182 103 SFWLLPPALILLLGSAFVEQGAGTGWTVYPPLSSIQAHSggaVDMAIFSLHLAGVSSILGAINFITTIFNMRAPGVTFNR 182

                        170       180       190
                 ....*....|....*....|....*....|..
gi 893657811 158 LSLFTWSVFITTILLLLSLPVLAGAITMLLSD 189
Cdd:MTH00182 183 LPLFVWSILITAFLLLLSLPVLAGAITMLLTD 214
COX1 MTH00026
cytochrome c oxidase subunit I; Provisional
 1-189 6.86e-64

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 164599  Cd Length: 534  Bit Score: 205.63  E-value: 6.86e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893657811   1 IFGIWAGMLGSSMSMMIRMELSSPGMLIGNDQIYNSIVTSHAFVMIFFMVMPIMMGGFGNWLIPLMINAPDMAFPRLNNM 80
Cdd:MTH00026  22 VFGALSGAIGTAFSMLIRLELSSPGSMLGDDHLYNVIVTAHAFVMIFFLVMPTMIGGFGNWFVPLMIGAPDMAFPRLNNI 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893657811  81 SFWLLPPSLIMLIYSNIFGMGTGTGWTVYPPLSSQQ---NPSIDLTIFSLHLAGISSILSSINFLCTIMNMKTFKFYMYN 157
Cdd:MTH00026 102 SFWLLPPALFLLLGSSLVEQGAGTGWTVYPPLASIQahsGGSVDMAIFSLHLAGLSSILGAMNFITTVMNMRTPGMTMSR 181

                        170       180       190
                 ....*....|....*....|....*....|..
gi 893657811 158 LSLFTWSVFITTILLLLSLPVLAGAITMLLSD 189
Cdd:MTH00026 182 IPLFVWSVFITAILLLLSLPVLAGAITMLLTD 213
Heme_Cu_Oxidase_I cd00919
Heme-copper oxidase subunit I. Heme-copper oxidases are transmembrane protein complexes in ...
 1-189 7.22e-59

Heme-copper oxidase subunit I. Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which catalyze the reduction of O2 and simultaneously pump protons across the membrane. The superfamily is diverse in terms of electron donors, subunit composition, and heme types. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. It has been proposed that Archaea acquired heme-copper oxidases through gene transfer from Gram-positive bacteria. Membership in the superfamily is defined by subunit I, which contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme and a copper ion. It also contains a low-spin heme, believed to participate in the transfer of electrons to the binuclear center. Only subunit I is common to the entire superfamily. For every reduction of an O2 molecule, eight protons are taken from the inside aqueous compartment and four electrons are taken from the electron donor on the opposite side of the membrane. The four electrons and four of the protons are used in the reduction of O2; the four remaining protons are pumped across the membrane. This charge separation of four charges contributes to the electrochemical gradient used for ATP synthesis. Two proton channels, the D-pathway and K-pathway, leading to the binuclear center have been identified in subunit I of cytochrome c oxidase (CcO) and ubiquinol oxidase. A well-defined pathway for the transfer of pumped protons beyond the binuclear center has not been identified. Electron transfer occurs in two segments: from the electron donor to the low-spin heme, and from the low-spin heme to the binuclear center. The first segment can be a multi-step process and varies among the different families, while the second segment, a direct transfer, is consistent throughout the superfamily.


Pssm-ID: 238461  Cd Length: 463  Bit Score: 190.43  E-value: 7.22e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893657811   1 IFGIWAGMLGSSMSMMIRMELSSPGMLIGNDQIYNSIVTSHAFVMIFFMVMPIMMGGFGNWLIPlMINAPDMAFPRLNNM 80
Cdd:cd00919   10 IFAFVALLLGGLLALLIRLELATPGSLFLDPQLYNQLVTAHGVIMIFFFVMPAIFGGFGNLLPP-LIGARDLAFPRLNNL 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893657811  81 SFWLLPPSLIMLIYSNIFGMGTGTGWTVYPPLSSQQ---NPSIDLTIFSLHLAGISSILSSINFLCTIMNMKTFKFYMYN 157
Cdd:cd00919   89 SFWLFPPGLLLLLSSVLVGGGAGTGWTFYPPLSTLSyssGVGVDLAILGLHLAGVSSILGAINFITTILNMRAPGMTLDK 168

                        170       180       190
                 ....*....|....*....|....*....|..
gi 893657811 158 LSLFTWSVFITTILLLLSLPVLAGAITMLLSD 189
Cdd:cd00919  169 MPLFVWSVLVTAILLLLALPVLAAALVMLLLD 200
CyoB COG0843
Heme/copper-type cytochrome/quinol oxidase, subunit 1 [Energy production and conversion];
1-189 7.81e-48

Heme/copper-type cytochrome/quinol oxidase, subunit 1 [Energy production and conversion];


Pssm-ID: 440605  Cd Length: 535  Bit Score: 162.99  E-value: 7.81e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893657811   1 IFGIWAGMLGSSMSMMIRMELSSPGMLIGNDQIYNSIVTSHAFVMIFFMVMPiMMGGFGNWLIPLMINAPDMAFPRLNNM 80
Cdd:COG0843   24 VTAFVFLLIGGLLALLMRLQLAGPGLGLLSPETYNQLFTMHGTIMIFFFATP-FLAGFGNYLVPLQIGARDMAFPRLNAL 102

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893657811  81 SFWLLPPSLIMLIYSNIFGMGTGTGWTVYPPLSSQQ---NPSIDLTIFSLHLAGISSILSSINFLCTIMNMKTFKFYMYN 157
Cdd:COG0843  103 SFWLYLFGGLLLLISLFVGGAADVGWTFYPPLSGLEaspGVGVDLWLLGLALFGVGSILGGVNFIVTILKMRAPGMTLMR 182

                        170       180       190
                 ....*....|....*....|....*....|..
gi 893657811 158 LSLFTWSVFITTILLLLSLPVLAGAITMLLSD 189
Cdd:COG0843  183 MPLFTWAALVTSILILLAFPVLAAALLLLLLD 214
COX1 MTH00048
cytochrome c oxidase subunit I; Provisional
 1-189 5.25e-47

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 177123  Cd Length: 511  Bit Score: 160.61  E-value: 5.25e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893657811   1 IFGIWAGMLGSSMSMMIRMELSSPGMLIGNDQIYNSIVTSHAFVMIFFMVMPIMMGGFGNWLIPLMINAPDMAFPRLNNM 80
Cdd:MTH00048  22 LLGVWSGFVGLSLSLLIRLNFLDPYYNVISLDVYNFLITNHGIIMIFFFLMPVLIGGFGNYLLPLLLGLSDLNLPRLNAL 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893657811  81 SFWLLPPSLIMLIYSNIFgmGTGTGWTVYPPLSSQQNPS---IDLTIFSLHLAGISSILSSINFLCTIMNMKTFKFYmYN 157
Cdd:MTH00048 102 SAWLLVPSIVFLLLSMCL--GAGVGWTFYPPLSSSLFSSswgVDFLMFSLHLAGVSSLFGSINFICTIYSAFMTNVF-SR 178

                        170       180       190
                 ....*....|....*....|....*....|..
gi 893657811 158 LSLFTWSVFITTILLLLSLPVLAGAITMLLSD 189
Cdd:MTH00048 179 TSIILWSYLFTSILLLLSLPVLAAAITMLLFD 210
Ubiquinol_Oxidase_I cd01662
Ubiquinol oxidase subunit I. Ubiquinol oxidase, the terminal oxidase in the respiratory ...
 9-189 7.90e-37

Ubiquinol oxidase subunit I. Ubiquinol oxidase, the terminal oxidase in the respiratory chains of aerobic bacteria, is a multi-chain transmembrane protein located in the cell membrane. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits in ubiquinol oxidase varies from two to five. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme and a copper ion. It also contains a low-spin heme, believed to participate in the transfer of electrons from ubiquinol to the binuclear center. For every reduction of an O2 molecule, eight protons are taken from the inside aqueous compartment and four electrons are taken from ubiquinol on the opposite side of the membrane. The four electrons and four of the protons are used in the reduction of O2; the four remaining protons are pumped across the membrane. This charge separation of four charges contributes to the electrochemical gradient used for ATP synthesis. Two proton channels, the D-pathway and K-pathway, leading to the binuclear center have been identified in subunit I. It is generally believed that the channels contain water molecules that act as 'proton wires' to transfer the protons. A well-defined pathway for the transfer of pumped protons beyond the binuclear center has not been identified. Electrons are believed to be transferred directly from ubiquinol (the electron donor) to the low-spin heme, and directly from the low-spin heme to the binuclear center.


Pssm-ID: 238832  Cd Length: 501  Bit Score: 133.09  E-value: 7.90e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893657811   9 LGSSMSMMIRMELSSPGMLIGNDQIYNSIVTSHAFVMIFFMVMPiMMGGFGNWLIPLMINAPDMAFPRLNNMSFWLLPPS 88
Cdd:cd01662   24 RGGVDALLMRTQLALPGNDFLSPEHYNQIFTMHGTIMIFLFAMP-LVFGLMNYLVPLQIGARDVAFPRLNALSFWLFLFG 102

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893657811  89 LIMLIYSNIFGMGTGTGWTVYPPLSSQQN---PSIDLTIFSLHLAGISSILSSINFLCTIMNMKTFKFYMYNLSLFTWSV 165
Cdd:cd01662  103 GLLLNASLLIGGFPDAGWFAYPPLSGLEYspgVGVDYWILGLQFSGIGTLLGAINFIVTILKMRAPGMTLMRMPIFTWTT 182

                        170       180
                 ....*....|....*....|....
gi 893657811 166 FITTILLLLSLPVLAGAITMLLSD 189
Cdd:cd01662  183 LVTSILILFAFPVLTAALALLELD 206
COX1 pfam00115
Cytochrome C and Quinol oxidase polypeptide I; Cytochrome c oxidase (E.C:7.1.1.9) is a key ...
 1-189 1.82e-33

Cytochrome C and Quinol oxidase polypeptide I; Cytochrome c oxidase (E.C:7.1.1.9) is a key enzyme in aerobic metabolism. Proton pumping haem-copper oxidases represent the terminal, energy-transfer enzymes of respiratory chains in prokaryotes and eukaryotes. The CuB-haem a3 (or haem o) binuclear centre, associated with the largest subunit I of cytochrome c and ubiquinol oxidases (E.C:1.10.3.11), is directly involved in the coupling between dioxygen reduction and proton pumping. Some terminal oxidases generate a transmembrane proton gradient across the plasma membrane (prokaryotes) or the mitochondrial inner membrane (eukaryotes). The enzyme complex consists of 3-4 subunits (prokaryotes) up to 13 polypeptides (mammals) of which only the catalytic subunit (equivalent to mammalian subunit I (COXI) is found in all haem-copper respiratory oxidases. The presence of a bimetallic centre (formed by a high-spin haem and copper B) as well as a low-spin haem, both ligated to six conserved histidine residues near the outer side of four transmembrane spans within CO I is common to all family members.


Pssm-ID: 459678  Cd Length: 432  Bit Score: 123.07  E-value: 1.82e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893657811    1 IFGIWAGMLGSSMSMMIRMELSSPGMLIGNDQIYNSIVTSHAFVMIFFMVMPIMMGgFGNWLIPLMINAPDMAFPRLNNM 80
Cdd:pfam00115   8 VTALVWFLVGGLLGLLIRLQLAFPGLNFLSPLTYNQLRTLHGNLMIFWFATPFLFG-FGNYLVPLMIGARDMAFPRLNAL 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893657811   81 SFWLLPPSLIMLIYSnifGMGTGTGWTVYPPLssqqnPSIDLTIFSLHLAGISSILSSINFLCTIMNMKTfKFYMYNLSL 160
Cdd:pfam00115  87 SFWLVVLGAVLLLAS---FGGATTGWTEYPPL-----VGVDLWYIGLLLAGVSSLLGAINFIVTILKRRA-PGMTLRMPL 157

                         170       180
                  ....*....|....*....|....*....
gi 893657811  161 FTWSVFITTILLLLSLPVLAGAITMLLSD 189
Cdd:pfam00115 158 FVWAILATAILILLAFPVLAAALLLLLLD 186
QoxB TIGR02882
cytochrome aa3 quinol oxidase, subunit I; This family (QoxB) encodes subunit I of the aa3-type ...
 10-189 2.66e-27

cytochrome aa3 quinol oxidase, subunit I; This family (QoxB) encodes subunit I of the aa3-type quinone oxidase, one of several bacterial terminal oxidases. This complex couples oxidation of reduced quinones with the reduction of molecular oxygen to water and the pumping of protons to form a proton gradient utilized for ATP production. aa3-type oxidases contain two heme a cofactors as well as copper atoms in the active site. [Energy metabolism, Electron transport]


Pssm-ID: 131928  Cd Length: 643  Bit Score: 107.63  E-value: 2.66e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893657811   10 GSSMSMMIRMELSSPGMLIGNDQIYNSIVTSHAFVMIFFMVMPIMMGgFGNWLIPLMINAPDMAFPRLNNMSFWLLPPSL 89
Cdd:TIGR02882  68 GGIDALLMRAQLTVPDNKFLDAQHYNEIFTTHGVIMIIFMAMPFIIG-LMNIVVPLQIGARDVAFPVLNALSFWLFFAGA 146

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893657811   90 IMLIYSNIFGMGTGTGWTVYPPLSSQQ---NPSIDLTIFSLHLAGISSILSSINFLCTIMNMKTFKFYMYNLSLFTWSVF 166
Cdd:TIGR02882 147 MLFNISFVIGGSPDAGWTNYAPLAGPEfspGVGVNYYLIALQISGIGTLMTGINFFVTILKMRAPGMKLMQMPMFTWTTL 226

                         170       180
                  ....*....|....*....|...
gi 893657811  167 ITTILLLLSLPVLAGAITMLLSD 189
Cdd:TIGR02882 227 ITTLIIIFAFPVLTVALALMTTD 249
PRK15017 PRK15017
cytochrome o ubiquinol oxidase subunit I; Provisional
 34-189 1.79e-24

cytochrome o ubiquinol oxidase subunit I; Provisional


Pssm-ID: 184978  Cd Length: 663  Bit Score: 99.62  E-value: 1.79e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893657811  34 YNSIVTSHAFVMIFFMVMPIMMGgFGNWLIPLMINAPDMAFPRLNNMSFWLLPPSLIMLIYSNIFGMGTGTGWTVYPPLS 113
Cdd:PRK15017  99 YDQIFTAHGVIMIFFVAMPFVIG-LMNLVVPLQIGARDVAFPFLNNLSFWFTVVGVILVNVSLGVGEFAQTGWLAYPPLS 177

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 893657811 114 SQQ---NPSIDLTIFSLHLAGISSILSSINFLCTIMNMKTFKFYMYNLSLFTWSVFITTILLLLSLPVLAGAITMLLSD 189
Cdd:PRK15017 178 GIEyspGVGVDYWIWSLQLSGIGTTLTGINFFVTILKMRAPGMTMFKMPVFTWASLCANVLIIASFPILTVTVALLTLD 256
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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