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Conserved domains on  [gi|89275809|gb|ABD66264|]
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NADH dehydrogenase subunit 4, partial (mitochondrion) [Trachemys yaquia]

Protein Classification

proton-conducting transporter membrane subunit( domain architecture ID 1562513)

proton-conducting transporter membrane subunit such as NADH dehydrogenase subunit 2, 4, or N, which shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain

EC:  7.1.-.-
Gene Ontology:  GO:0005886

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Proton_antipo_M super family cl39059
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-234 2.06e-136

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


The actual alignment was detected with superfamily member MTH00124:

Pssm-ID: 476862 [Multi-domain]  Cd Length: 457  Bit Score: 390.71  E-value: 2.06e-136
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809    1 PIAGSMILAAVLLKLGGYGIIRIMTTLNPLSKTLSYPFMVLALWGVIMTGSICLRQTDLKSLIAYSSVSH*GLVIAATLT 80
Cdd:MTH00124 224 PIAGSMVLAAILLKLGGYGIIRITLLLPPLSNTLHYPFLTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIAATMI 303

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809   81 QTQWAYTGAITLMIAHGLTSSMLFCLANTNY*RTHSRTLLLARNMQLLYPLMSLWWLLASLANMAIPPTIKLMGELTIIT 160
Cdd:MTH00124 304 QTPWSLSGAMILMIAHGLTSSMLFCLANTNYERTHSRTLLLTRGLQLLLPLMTTWWLLANLTNMALPPTINLMGELTIMT 383

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 89275809  161 SLFNWSNITILMTGSGTIITATYTLYMLSTTQWGGTPSYIKTMPPTHTREHLLMILHILPMTLLVMKPELIWGT 234
Cdd:MTH00124 384 SLFNWSPTTIILTGLATLITASYTLYMFLSTQRGTLPTHITTIQPTHTREHLLMTLHIIPLLLLILKPELISGT 457
 
Name Accession Description Interval E-value
ND4 MTH00124
NADH dehydrogenase subunit 4; Provisional
 1-234 2.06e-136

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214427 [Multi-domain]  Cd Length: 457  Bit Score: 390.71  E-value: 2.06e-136
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809    1 PIAGSMILAAVLLKLGGYGIIRIMTTLNPLSKTLSYPFMVLALWGVIMTGSICLRQTDLKSLIAYSSVSH*GLVIAATLT 80
Cdd:MTH00124 224 PIAGSMVLAAILLKLGGYGIIRITLLLPPLSNTLHYPFLTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIAATMI 303

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809   81 QTQWAYTGAITLMIAHGLTSSMLFCLANTNY*RTHSRTLLLARNMQLLYPLMSLWWLLASLANMAIPPTIKLMGELTIIT 160
Cdd:MTH00124 304 QTPWSLSGAMILMIAHGLTSSMLFCLANTNYERTHSRTLLLTRGLQLLLPLMTTWWLLANLTNMALPPTINLMGELTIMT 383

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 89275809  161 SLFNWSNITILMTGSGTIITATYTLYMLSTTQWGGTPSYIKTMPPTHTREHLLMILHILPMTLLVMKPELIWGT 234
Cdd:MTH00124 384 SLFNWSPTTIILTGLATLITASYTLYMFLSTQRGTLPTHITTIQPTHTREHLLMTLHIIPLLLLILKPELISGT 457
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 1-224 5.76e-46

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 159.09  E-value: 5.76e-46
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809   1 PIAGSMILAAVLLKLGGYGIIRIMTTLNPL-SKTLSYPFMVLALWGVIMTGSICLRQTDLKSLIAYSSVSH*GLVIAATL 79
Cdd:COG1008 240 PTAGSVLLAGVLLKMGGYGLLRFALPLFPEaSAYFAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVLLGIF 319

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809  80 TQTQWAYTGAITLMIAHGLTSSMLFCLANTNY*RTHSRTLL----LARNMqllyPLMSLWWLLASLANMAIPPTIKLMGE 155
Cdd:COG1008 320 ALNPLGLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIAdlggLAKRM----PVLAALFLLAALASLGLPGTSGFVGE 395

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 89275809 156 LTIITSLFNWSNITILMTGSGTIITATYTLYMLSTTQWGGTPSYIKTMPPTHTREHLLMILHILPMTLL 224
Cdd:COG1008 396 FLVLLGAFQVNPWLAILAALGLILTAAYLLWMYQRVFFGPLKEELAELPDLNPRELAVLAPLAALILLL 464
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-178 4.36e-42

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 144.38  E-value: 4.36e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809     1 PIAGSMILAAVLLKLGGYGIIRIMTTLNPLSKTLSYPFMVLALWGVIMTGSICLRQTDLKSLIAYSSVSH*GLVIAATLT 80
Cdd:pfam00361 113 PTPVSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALGA 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809    81 QTQWAYTGAITLMIAHGLTSSMLFCLA-NTNY*RTHSRTLLLARNMQLLYPLMSLWWLLASLANMAIPPTIKLMGELTII 159
Cdd:pfam00361 193 GTIYGIQAAIFHLLTHGLFSAGLFLCAgSVIYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLIL 272

                         170
                  ....*....|....*....
gi 89275809   160 TSLFNWSNITILMTGSGTI 178
Cdd:pfam00361 273 AAAVAASWIFLVLAGVVGS 291
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 1-225 8.18e-39

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 140.07  E-value: 8.18e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809     1 PIAGSMILAAVLLKLGGYGIIRIMTTLNP-LSKTLSYPFMVLALWGVIMTGSICLRQTDLKSLIAYSSVSH*GLVIAATL 79
Cdd:TIGR01972 234 PTAGSVILAGVLLKMGTYGFLRFNLPLFPdASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLGIF 313

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809    80 TQTQWAYTGAITLMIAHGLTSSMLFCLANTNY*RTHSRTLLLARNMQLLYPLMSLWWLLASLANMAIPPTIKLMGELTII 159
Cdd:TIGR01972 314 SFNELGISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFLIL 393

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 89275809   160 TSLFNWSNITILMTGSGTIITATYTLYMLSTTQWGG-TPSYIKTMPPTHTREhLLMILHILPMTLLV 225
Cdd:TIGR01972 394 LGSFKVNPVVAFLAALGIVLAAAYMLTLYKRVFFGElSNPEVAEFPDLNGRE-IAVLAPLVVLILFL 459
 
Name Accession Description Interval E-value
ND4 MTH00124
NADH dehydrogenase subunit 4; Provisional
 1-234 2.06e-136

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214427 [Multi-domain]  Cd Length: 457  Bit Score: 390.71  E-value: 2.06e-136
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809    1 PIAGSMILAAVLLKLGGYGIIRIMTTLNPLSKTLSYPFMVLALWGVIMTGSICLRQTDLKSLIAYSSVSH*GLVIAATLT 80
Cdd:MTH00124 224 PIAGSMVLAAILLKLGGYGIIRITLLLPPLSNTLHYPFLTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIAATMI 303

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809   81 QTQWAYTGAITLMIAHGLTSSMLFCLANTNY*RTHSRTLLLARNMQLLYPLMSLWWLLASLANMAIPPTIKLMGELTIIT 160
Cdd:MTH00124 304 QTPWSLSGAMILMIAHGLTSSMLFCLANTNYERTHSRTLLLTRGLQLLLPLMTTWWLLANLTNMALPPTINLMGELTIMT 383

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 89275809  161 SLFNWSNITILMTGSGTIITATYTLYMLSTTQWGGTPSYIKTMPPTHTREHLLMILHILPMTLLVMKPELIWGT 234
Cdd:MTH00124 384 SLFNWSPTTIILTGLATLITASYTLYMFLSTQRGTLPTHITTIQPTHTREHLLMTLHIIPLLLLILKPELISGT 457
ND4 MTH00068
NADH dehydrogenase subunit 4; Provisional
 1-235 7.26e-125

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214417 [Multi-domain]  Cd Length: 458  Bit Score: 361.54  E-value: 7.26e-125
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809    1 PIAGSMILAAVLLKLGGYGIIRIMTTLNPLSKTLSYPFMVLALWGVIMTGSICLRQTDLKSLIAYSSVSH*GLVIAATLT 80
Cdd:MTH00068 224 PIAGSMILAAVLLKLGGYGILRISILLTPLSKELSYPFIILALWGVLMTSLICLRQTDLKSLIAYSSVSHMGLVIAAALI 303

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809   81 QTQWAYTGAITLMIAHGLTSSMLFCLANTNY*RTHSRTLLLARNMQLLYPLMSLWWLLASLANMAIPPTIKLMGELTIIT 160
Cdd:MTH00068 304 QTPWSFSGAIILMISHGLTSSALFCLANTNYERTHSRTLLLLRGAQTILPLMATWWLLSNLSNMALPPSPNLWGELTIMV 383

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 89275809  161 SLFNWSNITILMTGSGTIITATYTLYMLSTTQWGGTPSYIKTMPPTHTREHLLMILHILPMTLLVMKPELIWGTF 235
Cdd:MTH00068 384 SLFNWSNWTILITGLGTLITAAYTLYMFLMTQRGPLPNHLKTLFPTYTREHLLLALHILPMLLLILKPELISGMF 458
ND4 MTH00110
NADH dehydrogenase subunit 4; Provisional
 1-236 4.99e-114

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177172 [Multi-domain]  Cd Length: 459  Bit Score: 334.17  E-value: 4.99e-114
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809    1 PIAGSMILAAVLLKLGGYGIIRIMTTLNPLSKTLSYPFMVLALWGVIMTGSICLRQTDLKSLIAYSSVSH*GLVIAATLT 80
Cdd:MTH00110 224 PIAGSMVLAAILLKLGGYGMMRITIILNPLTEFMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILI 303

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809   81 QTQWAYTGAITLMIAHGLTSSMLFCLANTNY*RTHSRTLLLARNMQLLYPLMSLWWLLASLANMAIPPTIKLMGELTIIT 160
Cdd:MTH00110 304 QTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMATWWLLASLTNLALPPTINLIGELFVIM 383

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 89275809  161 SLFNWSNITILMTGSGTIITATYTLYMLSTTQWGGTPSYIKTMPPTHTREHLLMILHILPMTLLVMKPELIWGTFY 236
Cdd:MTH00110 384 SSFSWSNITIILMGLNMLITALYSLYMLITTQRGKLTHHINNIKPSFTRENTLMALHLLPLLLLSLNPKIILGPTY 459
ND4 MTH00127
NADH dehydrogenase subunit 4; Provisional
 1-233 1.55e-102

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177186 [Multi-domain]  Cd Length: 459  Bit Score: 304.96  E-value: 1.55e-102
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809    1 PIAGSMILAAVLLKLGGYGIIRIMTTLNPLSKTLSYPFMVLALWGVIMTGSICLRQTDLKSLIAYSSVSH*GLVIAATLT 80
Cdd:MTH00127 225 PIAGSMVLAAVLLKLGGYGMMRMMVMLDPLTKELSYPFIILALWGIIMTGSICLRQTDLKSLIAYSSVSHMGLVAGGILI 304

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809   81 QTQWAYTGAITLMIAHGLTSSMLFCLANTNY*RTHSRTLLLARNMQLLYPLMSLWWLLASLANMAIPPTIKLMGELTIIT 160
Cdd:MTH00127 305 QTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQMILPLMATWWFIASLANLALPPLPNLMGELMIIT 384

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 89275809  161 SLFNWSNITILMTGSGTIITATYTLYMLSTTQWGGTPSYIKTMPPTHTREHLLMILHILPMTLLVMKPELIWG 233
Cdd:MTH00127 385 SLFNWSPWTLALTGLGTLITAGYSLYMFLMTQRGPLPDHIIALNPSHTREHLLMALHLLPLLLLILKPELIWG 457
ND4 MTH00206
NADH dehydrogenase subunit 4; Provisional
 1-231 3.42e-92

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214458 [Multi-domain]  Cd Length: 450  Bit Score: 277.98  E-value: 3.42e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809    1 PIAGSMILAAVLLKLGGYGIIRIMTTLNPLSKTLSYPFMVLALWGVIMTGSICLRQTDLKSLIAYSSVSH*GLVIAATLT 80
Cdd:MTH00206 220 PVAGSMVLAGVLLKLGGYGMMRIILILGPSTKLSSYFFIILGLWGSIMTSSICLRQTDLKSLIAYSSVSHMSLVTAGILS 299

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809   81 QTQWAYTGAITLMIAHGLTSSMLFCLANTNY*RTHSRTLLLARNMQLLYPLMSLWWLLASLANMAIPPTIKLMGELTIIT 160
Cdd:MTH00206 300 GSPWGFKGALLLMIAHGLVSSALFCLANLLYERSHTRTILGNRGLQMILPLLSFWWLLFFLANLGLPPFPNLFGELLIIT 379

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 89275809  161 SLFNWSNITILMTGSGTIITATYTLYMLSTTQWGGTPSYIKTMPPTHTREHLLMILHILPMTLLVMKPELI 231
Cdd:MTH00206 380 SLFSWSNFTLPLLGLGFLFTAIYSLYMFVMTQHGKTPNHLLSLSPSSTREHLLLFLHLFPVILLILNPNLI 450
ND4 MTH00044
NADH dehydrogenase subunit 4; Validated
 1-231 6.56e-77

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214411 [Multi-domain]  Cd Length: 458  Bit Score: 239.11  E-value: 6.56e-77
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809    1 PIAGSMILAAVLLKLGGYGIIRIMTTLN-PLSKTLSYPFMVLALWGVIMTGSICLRQTDLKSLIAYSSVSH*GLVIAATL 79
Cdd:MTH00044 225 PVAGSMILAAILLKLGGYGLIRLINLFSlPSANNISFILIVFCCWGALITSIICLRQTDLKALIAYSSVGHMSLVAAGIF 304

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809   80 TQTQWAYTGAITLMIAHGLTSSMLFCLANTNY*RTHSRTLLLARNMQLLYPLMSLWWLLASLANMAIPPTIKLMGELTII 159
Cdd:MTH00044 305 SGTNWGINGALILMIAHGLVSSALFCLANILYERSGTRTLSITRGFKLITPLLPLWWLIFCAANLGLPPLPNLIGELLII 384

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 89275809  160 TSLFNWSNITILMTGSGTIITATYTLYMLSTTQWGGTPSYIKTMPPTHTREHLLMILHILPMTLLVMKPELI 231
Cdd:MTH00044 385 SSIISWSILSFPIIGLATVFGAIYSLLIYQLTNSGSFPSWISNVSPISSREHLLIFLHLLPLILIIINPNII 456
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
 1-231 1.13e-75

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 235.43  E-value: 1.13e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809    1 PIAGSMILAAVLLKLGGYGIIRIMTTLNPLSKTLSYPFMVLALWGVIMTGSICLRQTDLKSLIAYSSVSH*GLVIAATLT 80
Cdd:MTH00163 212 PVSGSMILAGVLLKLGGYGLLRVMSFFSKLGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMT 291

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809   81 QTQWAYTGAITLMIAHGLTSSMLFCLANTNY*RTHSRTLLLARNMQLLYPLMSLWWLLASLANMAIPPTIKLMGELTIIT 160
Cdd:MTH00163 292 FSYWGLMGSLLMMIGHGLCSSGLFCLANIIYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLIN 371

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 89275809  161 SLFNWSNITILMTGSGTIITATYTLYMLSTTQWGGTPSYIKTMPPTHTREHLLMILHILPMTLLVMKPELI 231
Cdd:MTH00163 372 SLISWSKLSMIFLMLLSFFSAAYSLYLYSYSQHGKYYSGLYSCSSGKVREYLLLFLHWLPLNLLILKSDLF 442
ND4 MTH00150
NADH dehydrogenase subunit 4; Provisional
 1-231 1.21e-70

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214435 [Multi-domain]  Cd Length: 417  Bit Score: 221.64  E-value: 1.21e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809    1 PIAGSMILAAVLLKLGGYGIIRIMTTLNPLSKTLSYPFMVLALWGVIMTGSICLRQTDLKSLIAYSSVSH*GLVIAATLT 80
Cdd:MTH00150 183 PVAGSMILAGILLKLGGYGILRMMMVFSLSSSSFSIFLISLSLWGGVLTSLICLRQSDVKSLIAYSSVGHMSLVLAGVLS 262

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809   81 QTQWAYTGAITLMIAHGLTSSMLFCLANTNY*RTHSRTLLLARNMQLLYPLMSLWWLLASLANMAIPPTIKLMGELTIIT 160
Cdd:MTH00150 263 NTSWGWVGALIMMVSHGFCSSGLFCLANYTYEKVHSRSLFLSKGMLMLYPSLSLWWFLFCIINMAAPPSLNLLSEIMIFP 342

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 89275809  161 SLFNWSNITILMTGSGTIITATYTLYMLSTTQWGGTPSYIKTMPPTHTREHLLMILHILPMTLLVMKPELI 231
Cdd:MTH00150 343 SLISYSPWFFVPLGLMVFLSGLYSLYLYTSIQHGGSSSFLKPFNELKSSEMLLLLLHWVPLLLLILKSDLL 413
ND4 MTH00014
NADH dehydrogenase subunit 4; Validated
 1-231 1.68e-64

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214399 [Multi-domain]  Cd Length: 452  Bit Score: 206.90  E-value: 1.68e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809    1 PIAGSMILAAVLLKLGGYGIIRIMTTLNPLSKTLSYPFMVLALWGVIMTGSICLRQTDLKSLIAYSSVSH*GLVIAATLT 80
Cdd:MTH00014 218 PVAGSMILAGILLKLGGYGLLRMSSLFMHINKSLSAPFSSISLVGAVITSLICIRQPDLKSLIAYSSVGHMGLMTAGIMS 297

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809   81 QTQWAYTGAITLMIAHGLTSSMLFCLANTNY*RTHSRTLLLARNMQLLYPLMSLWWLLASLANMAIPPTIKLMGELTIIT 160
Cdd:MTH00014 298 NTSWGWQGALAMMIAHGLCSSALFALANMTYETTHTRSLFLTKGLLSLFPTMTMWWFLLSAANMAAPPSINLLSEIMLLT 377

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 89275809  161 SLFNWSNITILMTGSGTIITATYTLYMLSTTQWGGTPSYIKTMPPTHTREHLLMILHILPMTLLVMKPELI 231
Cdd:MTH00014 378 SILSSSLSTAILLAITSFLAAAYSLFLYTSTQHGSPPSFMNPLNLFTPRNHTLMTLHLVPLFILILKPDLI 448
ND4 MTH00205
NADH dehydrogenase subunit 4; Provisional
 1-231 3.38e-62

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214457 [Multi-domain]  Cd Length: 448  Bit Score: 200.98  E-value: 3.38e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809    1 PIAGSMILAAVLLKLGGYGIIRIMTTLNPLSKTLSYPFMVLALWGVIMTGSICLRQTDLKSLIAYSSVSH*GLVIAATLT 80
Cdd:MTH00205 216 PVSGSMILAGVLLKLGGYGLIRITSMLYKLNSNFSELFFSISLWGGVMTGMICLRQVDLKSLIAYSSVGHMGLMVVGVFS 295

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809   81 QTQWAYTGAITLMIAHGLTSSMLFCLANTNY*RTHSRTLLLARNMQLLYPLMSLWWLLASLANMAIPPTIKLMGELTIIT 160
Cdd:MTH00205 296 NTSWGMNGAIIMMVAHGLCSSGMFALANVNYERTNSRSMLMNKGVLNTFPFLVLMWFLLISCNMAAPPSLNLASEILLIM 375

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 89275809  161 SLFNWSNITILMTGSGTIITATYTLYMLSTTQWGGTPSYIKTMPPTHTREHLLMILHILPMTLLVMKPELI 231
Cdd:MTH00205 376 SLLSSSKISGIPLSLISFLSGAYSLYLYSQSQHGKVSSQISSFLAISEREYYILILHWFPLNILILKLKIF 446
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 1-224 5.76e-46

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 159.09  E-value: 5.76e-46
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809   1 PIAGSMILAAVLLKLGGYGIIRIMTTLNPL-SKTLSYPFMVLALWGVIMTGSICLRQTDLKSLIAYSSVSH*GLVIAATL 79
Cdd:COG1008 240 PTAGSVLLAGVLLKMGGYGLLRFALPLFPEaSAYFAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVLLGIF 319

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809  80 TQTQWAYTGAITLMIAHGLTSSMLFCLANTNY*RTHSRTLL----LARNMqllyPLMSLWWLLASLANMAIPPTIKLMGE 155
Cdd:COG1008 320 ALNPLGLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIAdlggLAKRM----PVLAALFLLAALASLGLPGTSGFVGE 395

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 89275809 156 LTIITSLFNWSNITILMTGSGTIITATYTLYMLSTTQWGGTPSYIKTMPPTHTREHLLMILHILPMTLL 224
Cdd:COG1008 396 FLVLLGAFQVNPWLAILAALGLILTAAYLLWMYQRVFFGPLKEELAELPDLNPRELAVLAPLAALILLL 464
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-178 4.36e-42

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 144.38  E-value: 4.36e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809     1 PIAGSMILAAVLLKLGGYGIIRIMTTLNPLSKTLSYPFMVLALWGVIMTGSICLRQTDLKSLIAYSSVSH*GLVIAATLT 80
Cdd:pfam00361 113 PTPVSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALGA 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809    81 QTQWAYTGAITLMIAHGLTSSMLFCLA-NTNY*RTHSRTLLLARNMQLLYPLMSLWWLLASLANMAIPPTIKLMGELTII 159
Cdd:pfam00361 193 GTIYGIQAAIFHLLTHGLFSAGLFLCAgSVIYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLIL 272

                         170
                  ....*....|....*....
gi 89275809   160 TSLFNWSNITILMTGSGTI 178
Cdd:pfam00361 273 AAAVAASWIFLVLAGVVGS 291
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 1-225 8.18e-39

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 140.07  E-value: 8.18e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809     1 PIAGSMILAAVLLKLGGYGIIRIMTTLNP-LSKTLSYPFMVLALWGVIMTGSICLRQTDLKSLIAYSSVSH*GLVIAATL 79
Cdd:TIGR01972 234 PTAGSVILAGVLLKMGTYGFLRFNLPLFPdASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLGIF 313

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809    80 TQTQWAYTGAITLMIAHGLTSSMLFCLANTNY*RTHSRTLLLARNMQLLYPLMSLWWLLASLANMAIPPTIKLMGELTII 159
Cdd:TIGR01972 314 SFNELGISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFLIL 393

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 89275809   160 TSLFNWSNITILMTGSGTIITATYTLYMLSTTQWGG-TPSYIKTMPPTHTREhLLMILHILPMTLLV 225
Cdd:TIGR01972 394 LGSFKVNPVVAFLAALGIVLAAAYMLTLYKRVFFGElSNPEVAEFPDLNGRE-IAVLAPLVVLILFL 459
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 1-224 2.79e-37

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 136.10  E-value: 2.79e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809    1 PIAGSMILAAVLLKLGGYGIIRIMTTLNPL-SKTLSYPFMVLALWGVIMTGSICLRQTDLKSLIAYSSVSH*GLVIAATL 79
Cdd:PRK05846 242 PTAGSVLLAGILLKMGAYGLLRFSLPLFPDaSHEFAPIIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMGFVTLGIF 321

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809   80 TQTQWAYTGAITLMIAHGLTSSMLFCLANTNY*RTHSRTLL----LARNMqllyPLMSLWWLLASLANMAIPPTIKLMGE 155
Cdd:PRK05846 322 AGNQLGIQGAIFQMISHGLSSAALFLLVGVLYDRLHTRDIAdyggLAKVM----PVLAAFFLFFAMASLGLPGTSGFVGE 397

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 89275809  156 LTIITSLFNWSNITILMTGSGTIITATYTLYMLSTTQWGGTPSYIKTMPPTHTREhLLMILHILPMTLL 224
Cdd:PRK05846 398 FLILLGSFQVNPVIAFIATTGLILAAVYSLWLYQRVMFGPVKNEVAKLKDLNGRE-LLILLPLVALLLL 465
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
 1-231 1.55e-36

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 134.04  E-value: 1.55e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809    1 PIAGSMILAAVLLKLGGYGIIRIMTTLNPLSKTLSYPFMV-LALWGVIMTGSICLRQTDLKSLIAYSSVSH*GLVIAATL 79
Cdd:MTH00204 240 PVAGSVILAGILLKLGGYGFLRFSWPLFPAASEYFAPLIVmLSVIAVIYGSLTTCRQVDFKRLIAYSSVAHMGLVPLGLF 319

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809   80 TQTQWAYTGAITLMIAHGLTSSMLFCLANTNY*RTHSRTLLLARNMQLLYPLMSLWWLLASLANMAIPPTIKLMGELTII 159
Cdd:MTH00204 320 THTIEGLVAAVFLMLAHGFVSSALFIAVTFLYERHHTRLIKYYRGLTLTMPLFVIIMLVLSLANMGFPLSCNFVGEFFSL 399

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 89275809  160 TSLFNWSNITILMTGSGTIITATYTLYMLSTTQWGGTPSYIKTMPPTHTREHLLMILHILPMTLLVMKPELI 231
Cdd:MTH00204 400 LAAFEYSLGLGVLVTSGMVWSAAYSLYLYNRISFGGGSNYLLFSRDLNRRELLAILPLIIAIFLLGIVPFII 471
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
 1-200 2.78e-35

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 130.56  E-value: 2.78e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809    1 PIAGSMILAAVLLKLGGYGIIRIMTTLNPLSKTLSYPF-MVLALWGVIMTGSICLRQTDLKSLIAYSSVSH*GLVIAATL 79
Cdd:MTH00217 237 PVAGSVILAGVLLKLGGYGFIRFSWPLLPEASEYFSPLiQTLSLLAIIYGSLTTCRQVDLKRIIAYSSVAHMGLVTLGIF 316

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809   80 TQTQWAYTGAITLMIAHGLTSSMLFCLANTNY*RTHSRTLLLARNMQLLYPLMSLWWLLASLANMAIPPTIKLMGELTII 159
Cdd:MTH00217 317 SHTIQGLVAAIFLMLAHGLVSSALFIAVTFLYERHHTRLIKYYRGMVITMPLFGILMLLLVLANASIPLSCNFVGEFLSL 396

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 89275809  160 TSLFNWSNITILMTGSGTIITATYTLYMLSTTQWGGTPSYI 200
Cdd:MTH00217 397 LAAFEYSYIVGVLASLGMVLSAGYSIYLYNRVCFGAPSKYL 437
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 1-231 1.72e-33

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 125.80  E-value: 1.72e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809    1 PIAGSMILAAVLLKLGGYGIIRIMTTLNPL-SKTLSYPFMVLALWGVIMTGSICLRQTDLKSLIAYSSVSH*GLVIAATL 79
Cdd:MTH00226 261 PVAGSVLLAGILLKLGGYGLVRLSWPILPLgAQNLAPAVIAMGIVGIVYGSFATCRQIDVKRLVAYSSVAHMGLVSITLV 340

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809   80 TQTQWAYTGAITLMIAHGLTSSMLFCLANTNY*RTHSRTLLLARNMQLLYPLMSLWWLLASLANMAIPPTIKLMGELTII 159
Cdd:MTH00226 341 THDIIGLTGSIFIMLAHGIVSSLLFILVTILYDRHHTRLIKYYRGLSITMPIWGTIMIVTSLANVAVPPSGNFIGEYLSI 420

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 89275809  160 TSLFNWSNITILMTGSGTIITATYTLYMLSTTQWGGTPSYIKTMPPTHTREHLLMILHILPMTLLVMKPELI 231
Cdd:MTH00226 421 LSSFNWNPIIGVFVCSGVILSAVYSFYFANRVTFGAPGNLITFARDVNRREFYITASMVFFAFLIGIYPIFI 492
ND4 MTH00094
NADH dehydrogenase subunit 4; Provisional
 1-188 9.67e-24

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177157 [Multi-domain]  Cd Length: 403  Bit Score: 98.06  E-value: 9.67e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809    1 PIAGSMILAAVLLKLGGYGIIRIMttlNPLSKTLSYPFMVLALWGVIMTGSICLRQTDLKSLIAYSSVSH*GLVIAATLT 80
Cdd:MTH00094 182 PTTASMLLAGLLLKLGTAGFLRIL---GSLNFVYNNFWIIFSLLGMILSSFCCVFQSDSKSLAAYSSVTHMSFLLLSLVY 258

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809   81 QTQWAYTGAITLMIAHGLTSSMLFCLANTNY*RTHSRTLLLARNMQLLYPLMSLWWLLASLANMAIPPTIKLMGELTIIT 160
Cdd:MTH00094 259 MSMSGKLSGLMMMLAHGYTSTLMFYLIGEFYHISKSRLIYFMNSFFSSSMFFGLIFSLVFLSNSGVPPSLSFFSEFLIIS 338

                        170       180
                 ....*....|....*....|....*...
gi 89275809  161 SLFNWSNITILMTGSGTIITATYTLYML 188
Cdd:MTH00094 339 NSFMKNKFSFFFIFFYFLVSFYYSLFLI 366
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 4-188 8.92e-23

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 95.87  E-value: 8.92e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809    4 GSMILAAVLLKLGGYGIIRIMTTLNPLSKTLSYPfmVLALWGV--IMTGSIC-LRQTDLKSLIAYSSVSH*GLVIAATLT 80
Cdd:PRK12561 219 VSMILAGVLLKMGGYALIRFNVQMLPDAHVYFAP--ALAILGVvnIIYGALNaFAQDNVKRRLAYSSVSHMGFVLLGIAA 296

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809   81 QTQWAYTGAITLMIAHGLTSSMLFCLANTNY*RTHsrTLLLAR--NMQLLYPLMSLWWLLASLANMAIPPTIKLMGELTI 158
Cdd:PRK12561 297 FTDLGISGAMLQMISHGLIAAALFFLTGVTYERTH--TLSIPNmgGLAKVMPKTFALFTASSMASLALPGMSGFVSELTV 374

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 89275809  159 ---ITSLFNWSN----ITILMTGSGTIITATYTLYML 188
Cdd:PRK12561 375 flgITSSDVYSStfrtITILLAAVGLILTPIYLLSML 411
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 1-179 1.34e-21

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 92.13  E-value: 1.34e-21
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809   1 PIAGSMILAAVLLKLGGYGIIRIMTTLNP--LSKTLSYPFMVLALWGVIMTGSICLRQTDLKSLIAYSSVSH*GLVIAAT 78
Cdd:COG0651 236 PSPVSALLSGLLTKVGVYAILRVLTLLFGadPALFLGTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGL 315

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809  79 LTQTQWAYTGAITLMIAHGLTSSMLFCLANTNY*RTHSRTLLLARNMQLLYPLMSLWWLLASLANMAIPPTIKLMGELTI 158
Cdd:COG0651 316 GLGTPLGLAGALFHLLNHALAKALLFLAAGAIERATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLL 395

                       170       180
                ....*....|....*....|....*
gi 89275809 159 ITSLFN----WSNITILMTGSGTII 179
Cdd:COG0651 396 LQAALEagawLLAAVLLLSSLLTLA 420
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
5-212 1.80e-20

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 89.37  E-value: 1.80e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809    5 SMILAAVLLKLGGYGIIRIMTTLNPLSKTLSYPFmvLALWGVI--MTGSIC-LRQTDLKSLIAYSSVSH*GLVIAATLTQ 81
Cdd:PRK06473 240 SVLLAGVLLKLGTYGLLRFGVGLFPEAWVYLAPW--LATWAVVsvLYGASCaIAQKDMKKMVAYSSIGHMGYILLAAAAA 317

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809   82 TQWAYTGAITLMIAHGLTSSMLFCLANTNY*RTHSRTLLLAR---NMQLLYPLMSLWWLLASLANMAIPPTIKLMGELTI 158
Cdd:PRK06473 318 TPLSILAAVFQMISHGLISALLFLLVGVVYKKTGSRDVDVLRgllNPERGLPITGSLMILGVMASAGIPGMVGFIAEFLV 397

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 89275809  159 ITSLFNWSNITILMTGSGTIITATYTLYMLSTTQWGGTPSYIKTMPPTHTREHL 212
Cdd:PRK06473 398 FRGSFPIFPVQTLLCMIGTGLTAVYFLLLVNRVFFGRLTAELSNLPRVLWSERL 451
ndhD CHL00011
NADH dehydrogenase subunit 4
 6-188 2.52e-20

NADH dehydrogenase subunit 4


Pssm-ID: 176954 [Multi-domain]  Cd Length: 498  Bit Score: 88.85  E-value: 2.52e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809    6 MILAAVLLKLGGYGIIRIMTTLNPLSKTLSYPF-MVLALWGVIMTGSICLRQTDLKSLIAYSSVSH*GLVIAATLTQTQW 84
Cdd:CHL00011 247 MLLAGILLKMGAYGLIRINMELLPHAHSIFSPWlVIVGAIQIIYAASTSLGQRNLKKRIAYSSVSHMGFIIIGIGSITDT 326

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809   85 AYTGAITLMIAHGLTSSMLFCLANTNY*RThsRTLLLAR--NMQLLYPLMSLWWLLASLANMAIPPTIKLMGELT----I 158
Cdd:CHL00011 327 GLNGAILQIISHGFIGAALFFLAGTSYDRI--RLVYLDEmgGIAIPMPKIFTMFSSFSMASLALPGMSGFVAELIvffgI 404

                        170       180       190
                 ....*....|....*....|....*....|...
gi 89275809  159 ITS---LFNWSNITILMTGSGTIITATYTLYML 188
Cdd:CHL00011 405 ITSqkyLLMPKILITFVMAIGMILTPIYLLSML 437
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 6-188 6.79e-17

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 78.98  E-value: 6.79e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809    6 MILAAVLLKLGGYGIIRIMTTLNPLSKTLSYPFM-VLALWGVIMTGSICLRQTDLKSLIAYSSVSH*GLVIAATLTQTQW 84
Cdd:PRK02546 249 MLLAGILLKMGGYALLRMNAGMLPDAHAQFAPLLiVLGVVNIIYAALTSFAQRNLKRKIAYSSISHMGFVLIGIGSFTDL 328

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809   85 AYTGAITLMIAHGLTSSMLFCLANTNY*RTHsrTLLL------ARNMQLLYPLmslwWLLASLANMAIPPTIKLMGELTI 158
Cdd:PRK02546 329 GTSGAMLQMISHGLIGASLFFLVGATYDRTH--TLMLdemggvGQKMRKMFAM----WTACSLASLALPGMSGFVAELMV 402

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 89275809  159 ITSL-------FNWSNITILMTGSGTIITATYTLYML 188
Cdd:PRK02546 403 FVGFatsdaytLPFRVVVVFLAAVGVILTPIYLLSML 439
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 5-225 3.04e-15

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 74.24  E-value: 3.04e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809    5 SMILAAVLLKLGGYGIIRIMTT-------LNPLSKTLSYPFMVLALWGVIMTGSICLRQTDLKSLIAYSSVSH*GLVIAA 77
Cdd:PRK12667 258 SAMLSGLVVNVGAYAIIRFLYTifgispsLIDFRAALSPILIILGAVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMG 337

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809   78 TLTQTQWAYTGAITLMIAHGLTSSMLFCLANTNY*RTHSRTLLLARNMQLLYPLMSLWWLLASLANMAIPPTIKLMGELT 157
Cdd:PRK12667 338 IGIGTQLGLAAALFHIINHAIAKSLLFLASGVFIHAAGTRDIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLL 417

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809  158 IITSLFNWSNITILMTgsGTIITATYTLYMLSTTQ--WGGTPSYIKTmppTHTREHLLMILHILPMTLLV 225
Cdd:PRK12667 418 LFNALLESGFYLPALV--LLIASAISLVGYFRAWYslFFGKPKSGEE---VEHKESPSMSVVILVLALAV 482
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 5-224 9.55e-15

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 72.60  E-value: 9.55e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809    5 SMILAAVLLKLGGYGIIRIMTTL----NPLSKTLSYPFMVLALWGVIMTGSICLRQTDLKSLIAYSSVSH*GLVIAATLT 80
Cdd:PRK08375 237 TALLSGLVTKVAVYALIRIYFTVfggdFRFALGLGWLLAVLALLSMLVGSLAALGQDDVKRVLAYSTVSQMGYILLGLAL 316

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809   81 QTQWAYTGAITLMIAHGLTSSMLFCLANTNY*RTHSRTLL----LARNMqllyPLMSLWWLLASLANMAIPPTIKLMGEL 156
Cdd:PRK08375 317 LTPLALAAGLLHLLHHALMKGALFLAAGAIEVTYGTRRLSelsgLGRRM----PLTAAAFAVASLSLIGVPPTSGFVSKW 392

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 89275809  157 TIITSLF---NWSNITILMTGSgtIITATYTLYMLSTTQWGGTPSYiktMPPTHTREHLLMILHILPMTLL 224
Cdd:PRK08375 393 YLVVGAVeagQWLVLAVLLASS--LLALLYFLRIWYRAFFGPPPPG---SEAPKQEAPLGMLAPSLALALL 458
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
3-194 8.69e-13

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 67.04  E-value: 8.69e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809    3 AGSMILAAVLLKLGGYGIIRIMTTLNPLSKTLSYPfmVLALWGVI--MTGS-ICLRQTDLKSLIAYSSVSH*GLVIAATL 79
Cdd:PRK07363 238 AVAILLGGVLAKLGTYGLLRFGLQLFPQTWSLVAP--GLAIIGTIsvIYGAlSAIAQKDIKRMVAYSSIGHMGYILVAAA 315

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809   80 TQTQWAYTGAITLMIAHGLTSSMLFCLANTNY*RTHSRTL-LLARNMQLL--YPLMSLWWLLASLANMAIPPTIKLMGEL 156
Cdd:PRK07363 316 AGTQLSLLGAVAQMISHGLILALLFHLVGIVERKVGTRDLdVLNGLMNPIrgLPLTSALLVLAGMASAGIPGLVGFVAEF 395

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 89275809  157 TIITSLFNWSNITILMTGSGTIITATYTLYMLSTTQWG 194
Cdd:PRK07363 396 IVFQGSFSTFPIPTLLCIVASGLTAVYFVILLNRTCFG 433
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 5-224 9.72e-11

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 60.71  E-value: 9.72e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809    5 SMILAAVLLKLGGYGIIR--IMTTLNPLSKTLSYPFMVLALWGVIMTGSICLRQTDLKSLIAYSSVSH*GLVIAATLTQT 82
Cdd:PRK06458 249 SALLSGVLLNVALYAVLRyyILIDAAIGSDFPGRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALGIGG 328

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809   83 QWAYTGAITLMIAHGLTSSMLFCLANTNY*RTHSRTLLLARNMQLLYPLMSLWWLLASLANMAIPPTIKLMGELTIITSL 162
Cdd:PRK06458 329 PLGIFAALLHMLNHSLTKSAIFFASGNVLQKYGTRDINVIRGLLKVSPLTGWGLMLGALAIAGMPPFGVFISEFLILTAG 408

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 89275809  163 FN---WSNITILMTGSGTIITAtyTLYMLSTTQWGGtpsyiktmPPTHTREHLLMILHILPMTLL 224
Cdd:PRK06458 409 LArgpLLIAILLLLLLTLAFAA--LVRRVAGMVFGE--------PPEAVNRGDLGWLTTSPMFVH 463
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 47-225 1.18e-09

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 57.85  E-value: 1.18e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809  47 IMTGSICLRQTDLKSLIAYSSVSH*GLVIAATLTQtqwAYTGAITLMIAHGLTSSMLFCLANTNY*RTHSR--TLL--LA 122
Cdd:COG1009 287 LFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVG---AYVAALFHLLTHAFFKALLFLGAGSVIHATGTRdiRKMggLR 363

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809 123 RNMQLLYPLMslwwLLASLANMAIPPTIKLMGELTIITSLFNWSNITILMTGSGTI---ITATYTLYMLSTTQWGGTpsy 199
Cdd:COG1009 364 KKMPITAITF----LIGALSLAGIPPFAGFFSKEAILEAALEAGGLGPLLLAVALLgafLTAFYSFRLFFLVFFGKP--- 436

                       170       180
                ....*....|....*....|....*..
gi 89275809 200 iKTMPPTHTRE-HLLMilhILPMTLLV 225
Cdd:COG1009 437 -RPKTPKHPHEsPWLM---TLPLVVLA 459
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 5-219 2.06e-09

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 57.08  E-value: 2.06e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809    5 SMILAAVLLKLGGYGIIRIMTTLNPLSKTLSYPFMV--LALWGVIMTGSICLRQTDLKSLIAYSSVSH*GLVIAATLTQT 82
Cdd:PRK08377 241 TVMFSAFVVKAGLYAMARILYLMQNANGWSSVLKLViiMATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIALALALGT 320

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809   83 QWAYTGAITLMIAHGLTSSMLFCLANTNY*RTHSRTLLLARNMQLLYPLMSLWWLLASLANMAIPPTIKLMGELTIITSL 162
Cdd:PRK08377 321 QAGVDAGVFHMINHAIVKALLFLAVGYVGITLGGTEIEKFEGLGKRMPLTALALTIGALSTVGIPLFNVFWSKFRIILAG 400

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 89275809  163 FN----WSNITILmtgSGTIITATYTLYMLSTTQWGGTPSYIKTMPPTHTREHLLMILHIL 219
Cdd:PRK08377 401 LSagytWPVALVL---GASVVEAVYYFRLIHTMWFKGEGERIRENAAIGIILLLLAALIVV 458
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 5-163 1.13e-07

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 52.04  E-value: 1.13e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809    5 SMILAAVLLKLGGYGIIRIMTTLnpLSKTLSYPFMVL------ALWGVIMTgsicLRQTDLKSLIAYSSVSH*GLV---- 74
Cdd:PRK08667 240 SALMSGVMLKVAVYGLVRFLMDV--LSPELWWGVLILlagsisALLGVIYA----LKEHDLKGLLAYSSIENIGIIlmgi 313

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809   75 -------IAATLTQTQWAYTGAITLMIAHGLTSSMLFCLANTNY*RTHSRTLLLARNMQLLYPLMSLWWLLASLANMAIP 147
Cdd:PRK08667 314 glyvifgVYGLDTLALLALGGALFHSLNHALFKSLLFLTAGSVVHATGTRNIEKMGGLVKLMPYTSALFLVGAVSIAALP 393

                        170
                 ....*....|....*.
gi 89275809  148 PTIKLMGELTIITSLF 163
Cdd:PRK08667 394 PFNGFASELLLYESFF 409
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 5-176 1.13e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 51.66  E-value: 1.13e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809    5 SMILAAVLLKLGGYGIIRIM-----TTLNPLSKTLSYPFMVLALWGVIMTGSICLRQTDLKSLIAYSSVSH*GLVIAATL 79
Cdd:PRK12662 244 SVFFSGTSTKVMIYLIIRIVydvfkANFVFTTLPFNNVFMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVS 323

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809   80 TQTQWAYTGAITLMIAHGLTSSMLFCLANT---NY*RTHSRTLL-LARNMqllyPLMSLWWLLASLANMAIPPTIKLMGE 155
Cdd:PRK12662 324 LNTYYGLAAAVAYIVNHSIVKSALFMVSGSisyHFGTTKLEDCLnLWKSM----PKITLAFVLLSLSLIGMPPTSGFVAK 399

                        170       180
                 ....*....|....*....|....
gi 89275809  156 LTIITSLFN---WSNITILMTGSG 176
Cdd:PRK12662 400 WYILDAFIKsnaWIGLVVLLVGSG 423
PRK12650 PRK12650
DUF4040 family protein;
47-206 1.93e-07

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 51.20  E-value: 1.93e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809   47 IMTGSICLRQTDLKSLIAYSSVSH*GLVIAATLTQTQWAYTGAITLMIAHGLTSSMLFCLANTNY*RTHSRTL--LLARN 124
Cdd:PRK12650 284 LMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTLAHALFKSSLFMLIGVVDHQAGTRDIrrLGSLW 363

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809  125 MQLLYPLMSLwwLLASLANMAIPPTIKLMGELTIITSLF-----NWSNITILMT-GSGTIITATYTL-YMLSTTQWGGTP 197
Cdd:PRK12650 364 RRMPFTFVSV--TIAALSMAAVPPLFGFVSKEGMLTAFLeapggNAGVVLLLVGaALGAVFTFAYSArLVLGAFVDGPRD 441

                        170
                 ....*....|
gi 89275809  198 -SYIKTMPPT 206
Cdd:PRK12650 442 mSHVKEAPVS 451
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 9-178 1.95e-07

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 51.13  E-value: 1.95e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809    9 AAVLLKLGGYGIIRIMTTLNPLSKTLSYPFMVLALWGVIMTGSICLRQTDLKSLIAYSSVSH*G---LVIAATLTQTQWA 85
Cdd:PRK06525 246 AASMVKVGVYIFARAIQSMGPIPHVIGYVGAVMAIVTLLYGFLMYLPQQDMKRLLAYSTITQLGymfFGLSLAILGSRLA 325

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809   86 YTGAITLMIAHGLTSSMLFCLANTNY*RTHSRTLLLARNMQLLYPLMSLWWLLASLANMAIPPTIKLMGELTIITSLFNW 165
Cdd:PRK06525 326 LEGSIAYIFNHAFAKSLFFLVAGALSYSCGTRLLPRLRGVLKKLPLVGVGFCVAALAITGVPPFNGFFSKFPIFAAGFEL 405

                        170
                 ....*....|...
gi 89275809  166 SNITILMTGSGTI 178
Cdd:PRK06525 406 SVEYWILLPAMVL 418
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 1-114 3.46e-07

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 50.38  E-value: 3.46e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809    1 PIAGSMILAAVLLKLGGYGIIRIMTTLnPLSK------------TLSYPFMVLALWGVIMTGSICLRQTDLKSLIAYSSV 68
Cdd:PRK08668 227 PQSFSAVLSGQLSKLGAYGFLLVLYVL-PGTKlfsefgtyrgvpLFNYILAWLGNISIIVGTLMAILQEDIKKLIAYSSV 305

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 89275809   69 SH*GLVIAATLTQTQWAYTGAITLMIAHGLTSSMLFCLANTNY*RT 114
Cdd:PRK08668 306 ANGGYILVGLGLGTSLGFAGGLFHVFNHALFKGLFFLIFAAVIYRT 351
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 1-162 8.21e-07

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 48.98  E-value: 8.21e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809    1 PIAGSMILAAVLLKLGGYGIIRIMTTL--NPLSKTLSYPFMVLALWGVIMTGSICLRQTDLKSLIAYSSVSH*GLVIAAT 78
Cdd:PRK08676 237 PSVVSALLSGTVLNIGIYGILRLSALLrqSGAAEQFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGI 316

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809   79 LTQTQWAYTGAITLMIAHGLTSSMLFCLANTNY*RTHSRTLLLARNMQLLYPLMSLWWLLASLANMAIPPTIKLMGELTI 158
Cdd:PRK08676 317 GIGTPLALFWMLFHMLAHSLVKSGLFFSAGILHRQYRSDRFDRIFDVFRLQPVAAWGVILGSAAIIGMPPFPLFLSKFFI 396


                 ....
gi 89275809  159 ITSL 162
Cdd:PRK08676 397 LLQL 400
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 54-174 2.47e-06

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 47.99  E-value: 2.47e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809   54 LRQTDLKSLIAYSSVSH*GLVIAATLTQTQWAYTGAITLMIAHGLTSSMLFCLANTNY*RTHSRTLLLARNMQLLYPLMS 133
Cdd:PRK12647 278 VRQTDLKLILAYSTVSALGTLVMLLGLGSELAIKAAVLFLVAHSLYKGALFMVAGIIDHETGTRDITKLGGLRRAMPITA 357

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 89275809  134 LWWLLASLANMAIPPTIKLMGELTIITSLFNWSNITILMTG 174
Cdd:PRK12647 358 AAALLAALSMAGLPPLFGFLAKELIYEALLEAPLWSLILTV 398
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 5-180 3.31e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 47.25  E-value: 3.31e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809    5 SMILAAVLLKLGGYGIIRIMTTLNPLSKTLSYPFMVLALWGVImtgsICLRQTDLKSLIAYSSVSH*GLVIAATLtqtqw 84
Cdd:PRK07234 219 SALLSGVVVKAGVFPLVRCALDVPGLDLIVRIFGVGTALLGVL----FALLEKDLKRMLAFSTISQLGFILAAPL----- 289

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809   85 ayTGAItLMIAHGLTSSMLFCLANTNY*RTHSRTLLLARNMQLLYPLmslwwLLASLANMAIPPTIKLMGELTIITSLFN 164
Cdd:PRK07234 290 --VGGL-YALAHGLVKSTLFLCAGALPSRNFTELISQMLGIGKWIPL-----TMASFSIAGFPLLAGFVSKVLTLKNLLP 361

                        170
                 ....*....|....*.
gi 89275809  165 WSNITILMTGSGTIIT 180
Cdd:PRK07234 362 WQAIALNLAAVGTAAS 377
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-164 4.78e-06

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 46.65  E-value: 4.78e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809  14 KLGGYGI-IRIMTT-LNPLSKTLSYPFMVLALwgVIMT-GSIC-LRQTDLKSLIAYSSVSH*GLVIAATLTQTQWAYTGA 89
Cdd:COG1007 246 KIAAFAAlLRLLVEaFPGLAADWQLLLAVLAV--LSMTvGNLAaLAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVSAA 323

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809  90 ITLMIAHGLTSSMLF-CLANTNY*RTHSRTLL----LARNMQLLYPLMSLwwLLASLAnmAIPPTIKLMGELTIITSLFN 164
Cdd:COG1007 324 LFYLLAYLFMNLGAFaVILLLSRKGGEAEEIEdlagLARRSPLLALAMTI--FLLSLA--GIPPTAGFFGKFYVFSAAVE 399
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 42-226 5.27e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 46.73  E-value: 5.27e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809   42 ALWGVIMTGSICLRQTDLKSLIAYSSVSH*GLVIAATLTQTQWAYTGAITLMIAHGLTSSMLFCLANTNY*RTHSRTLLL 121
Cdd:PRK06589 287 PIVSIFYSSLKALKTDNIKKILAYSTISQLSLALLSAFILTPKALGAAILHLVSHSFAKICLFYSMGSIYSLKKEDQVDK 366

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809  122 ARNMQLLYPLMSLWWLLASLANMAIPPTIKLMGELTIITSLFNWSNIT--ILMTGSGTIITATYTLYMLSTTQWGGTPSY 199
Cdd:PRK06589 367 LHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQPWlsIIVMLVVIASSILSALYLLKILSSIYKPSL 446

                        170       180
                 ....*....|....*....|....*..
gi 89275809  200 IKTMPPTHTREHLLMILHILPMTLLVM 226
Cdd:PRK06589 447 SENSFITKSLPYLMQISVITCCCALTL 473
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 9-195 1.73e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 45.30  E-value: 1.73e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809    9 AAVLLKLGGYGIIRimttLNP-LSKTLSYPFMVLALWGVIM--TGSICLRQTDLKSLIAYSSVSH*GLVIAATLTQTQWA 85
Cdd:PRK12644 242 AAAMVKAGIYLVAR----LAPgFADVPVWRPTVLVLGLATMllGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRDA 317

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809   86 YTGAITLMIAHGLTSSMLFCLANTNY*RTHSRTLL----LARNMQLLYPLMSLwwllaSLANMA-IPPTIKLMGELTIIT 160
Cdd:PRK12644 318 ALAGLAMLLAHALFKAALFLVVGIIDHSTGTRDIRklsgLGRRQPVLAVVAAL-----AAASMAgLPPLLGFVAKEAALE 392

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 89275809  161 SLFN------WSNITILMTGSGTIITATYTLYMLsttqWGG 195
Cdd:PRK12644 393 AVLHdgalgpAGPVVLAGIVLGSILTVAYSLRFL----WGA 429
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
1-226 2.31e-05

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 44.94  E-value: 2.31e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809    1 PIAGSMILAAVLLKLGGYGIIRIMTTLNPLSKTLSYPFMVLALWGVIMTGSI-CLRQTDLKSLIAYSSVSH*GLVIAATL 79
Cdd:PRK12663 237 NTEVAALFAALLTKVGIYALIRVFTLLFPQERELLHPLLATMAAITMVIGALgALAYKDIRRIAGYQVISSIGFILLGLA 316

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809   80 TQTQWAYTGAITLMIAHGLTSSMLFCLANTNY*RTHSRTLLLARNMQLLYPLMSLWWLLASLANMAIPPTIKLMGELTII 159
Cdd:PRK12663 317 LGTPAGINGAIFYLVHDMVVKTALFLIAGSLVRLTGYRSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLV 396

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 89275809  160 TSLFN----WSNITILMTGsgtIITATYTLYMLSTTQWGGTPSYIKTMPPTHTreHLLMILHILPMTLLVM 226
Cdd:PRK12663 397 QGALDngayILLALMLITS---LITMYSLFRIFFLAYWGDKDGEEVNFKPIPL--YRKLPLSILAVVVIAM 462
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 7-159 2.47e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 44.57  E-value: 2.47e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809    7 ILAAVLLKLGGYGIIRIMTTLNPlSKTLSYPFMVLALWGVIMTGSICLRQTDLKSLIAYSSVSH*GLVIAATLTQTQWAY 86
Cdd:PRK12665 246 VFAGLLTKVGVYAIIRTHTLLFP-GGGLDTLLMVVALLTMVVGILGAIAQSDIKRLLSFTLVSHIGYMVFGIALSTVAGL 324

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 89275809   87 TGAITLMIAHGLTSSMLFCLANTNY*RTHSRTLLLARNMQLLYPLMSLWWLLASLANMAIPPTIKLMGELTII 159
Cdd:PRK12665 325 SGAIYYVAHHITVQTTLFLVVGLIERQAGSSSLRRLGGLAKASPLLAVLFFVPALNLGGIPPFSGFIGKVALL 397
PRK12646 PRK12646
DUF4040 family protein;
9-225 2.56e-05

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 44.75  E-value: 2.56e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809    9 AAVLLKLGGYGIIRiMTTLNPLSKTLSYPFMVLALWGVIMTGSICLRQTDLKSLIAYSSVSH*GLVIA--------ATLT 80
Cdd:PRK12646 249 SATMVKAGIFLLFR-FTPLLGLSNMYIYIVTFVGLITMLFGSITALKQWDLKGILAYSTISQLGMIMAmvgigggyAQHQ 327

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809   81 QTQWAYTGAITL------MIAHGLTSSMLFCLANTNY*RTHSRTLLLARNMQLLYPLMSLWWLLASLANMAIPPTIKLMG 154
Cdd:PRK12646 328 QDAIASIYVFVLfaalfhLMNHAIFKCALFMGVGIIDHEAGTRDIRILSGMRQLFPKMNLVMTIAALSMAGVPFLNGFLS 407

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809  155 ELTIITSLFNWSNI-------TILMTGSG---TIITATYTLYMLSTTQWGgtPSYIKTMPPTHTREHLLMILHILPMTLL 224
Cdd:PRK12646 408 KEMFLDALTQTGQLsqfslisMIIIVFIGviaSIFTFTYALYMVKEVFWG--KYDSKVFTKKNIHEPWLFSLPSLILMVL 485


                 .
gi 89275809  225 V 225
Cdd:PRK12646 486 V 486
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
 5-148 6.47e-05

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 43.34  E-value: 6.47e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809    5 SMILAAVLLKLGGYGIIRI-MTTLNPLSKTLSYPFMVL----ALWGVIMTgsicLRQTDLKSLIAYSSVSH*GLVI---- 75
Cdd:PRK06521 245 SALMSGVMLKVAIYGILRVvFDLLGAPGWWWGVLVLALgaisAVLGVLYA----LAEHDLKRLLAYSTIENIGIIFvglg 320

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809   76 ------------AATLtqtqwAYTGAITLMIAHGLTSSMLFCLANTNY*RTHSRTLL----LARNMqllyPLMSLWWLLA 139
Cdd:PRK06521 321 lamvfiaygmplLAAL-----ALTAALYHLLNHALFKSLLFLGAGAVLHATGTRDMEklggLIRRM----PWTAWAFLIG 391


                 ....*....
gi 89275809  140 SLANMAIPP 148
Cdd:PRK06521 392 CLAISALPP 400
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-174 6.55e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 43.40  E-value: 6.55e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809    1 PIAGSMILAAVLLKLGGYGIIRIMTTLNPLSKTLSYPFM-VLALWGVIMTGSICLRQTDLKSLIAYSSVSH*GLVIAATL 79
Cdd:PRK07691 240 PIAIAALFGALLTKVGVYAIARTFTLFFSHDTSFTHYLIlILALLTIIFGVIGAVAYFDIKKIIIYNIMIAVGVILVGVA 319

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809   80 TQTQWAYTGAITLMIAHGLTSSMLFCLANTNY*RTHSRTLllaRNMQLL---YPLMSLWWLLASLANMAIPPTIKLMGEL 156
Cdd:PRK07691 320 MMTESGMIGAIYYLIHDMIVKAALFLLIGIMIKITGTTDL---KKMGGLikrYPVLGWMFFIAALSLAGIPPLSGFYGKF 396

                        170       180
                 ....*....|....*....|..
gi 89275809  157 TIITSLFN----WSNITILMTG 174
Cdd:PRK07691 397 FIVEGTFEagfyVSGIIVLLSS 418
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
54-100 3.79e-04

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 40.96  E-value: 3.79e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 89275809   54 LRQTDLKSLIAYSSVSH*GLVIAATLTQTQWAYTGAITLMIAHGLTS 100
Cdd:PRK05777 289 LSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYSAVLFYLLAYLFMT 335
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
39-148 4.08e-04

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 40.79  E-value: 4.08e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809   39 MVLALWGVIMTGSICLRQTDLKSLIAYSSVSH*GLVIAATLTQTQWAYTGAITLMIAHGLTSSMLFCLANTNY*RTHSRT 118
Cdd:PRK06277 270 IALSVLAMVFGVVMALLQTDYKRLLAYHAISQGGYVAAGLALGTPLGIVAGIFHAINHVIYKSALFLGAGIVSYRTKTSN 349

                         90       100       110
                 ....*....|....*....|....*....|
gi 89275809  119 LLLARNMQLLYPLMSLWWLLASLANMAIPP 148
Cdd:PRK06277 350 LRKLGGLLPVMPVVAFMVLCAKLAISGVPP 379
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-148 4.98e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 40.85  E-value: 4.98e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809    1 PIAGSMILAAVLL-KLGG-YGIIRIMTTLNPLS---KTLSYPFMVLALWGVIMTGSICLRQTDLKSLIAYSSVSH*GLVI 75
Cdd:PRK08376 248 PAAPSSISAMLLViKQAGlYALARVLFSIYGPAinlATVGWVIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYML 327

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275809   76 -----------AATLTQT-QWAYTGAITLMIAHGLTSSMLFCLANTNY*RTHSRTLL----LARNMqllyPLMSLWWLLA 139
Cdd:PRK08376 328 lglgvglaalgDPAMASYgEIALAGGIYHIVNHALYKALLFLTAGAVIYETGTRNLNelggLARTM----PKTTIAFLIG 403


                 ....*....
gi 89275809  140 SLANMAIPP 148
Cdd:PRK08376 404 AAAIVGLPP 412
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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