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Conserved domains on  [gi|88792526|gb|EAR23636|]
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hypothetical protein NB231_17488 [Nitrococcus mobilis Nb-231]

Protein Classification

similar to antitoxin VapB3( domain architecture ID 10009188)

protein similar to antitoxin VapB3

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG5302 COG5302
Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid [Mobilome: ...
 1-81 7.57e-33

Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid [Mobilome: prophages, transposons];


:

Pssm-ID: 444102  Cd Length: 80  Bit Score: 108.05  E-value: 7.57e-33
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 88792526  1 MQASKSiKATRKPTNLSLDSALLKEAKALGINVSRSAEAGISEAVKRHKRQRWLKENEGALASSNAYVEANGLPLAQYRQ 80
Cdd:COG5302  1 MPTTQS-QAPKKATNVSLDADLLAEARALGINLSAALEEALAEAVREAKAERWLEENAEAIEAYNRFVEEHGLPLDEYRS 79


               .
gi 88792526 81 F 81
Cdd:COG5302 80 F 80
 
Name Accession Description Interval E-value
COG5302 COG5302
Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid [Mobilome: ...
 1-81 7.57e-33

Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid [Mobilome: prophages, transposons];


Pssm-ID: 444102  Cd Length: 80  Bit Score: 108.05  E-value: 7.57e-33
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 88792526  1 MQASKSiKATRKPTNLSLDSALLKEAKALGINVSRSAEAGISEAVKRHKRQRWLKENEGALASSNAYVEANGLPLAQYRQ 80
Cdd:COG5302  1 MPTTQS-QAPKKATNVSLDADLLAEARALGINLSAALEEALAEAVREAKAERWLEENAEAIEAYNRFVEEHGLPLDEYRS 79


               .
gi 88792526 81 F 81
Cdd:COG5302 80 F 80
CcdA pfam07362
Post-segregation antitoxin CcdA; This family consists of several Enterobacterial ...
 11-81 3.77e-25

Post-segregation antitoxin CcdA; This family consists of several Enterobacterial post-segregation antitoxin CcdA proteins. The F plasmid-carried bacterial toxin, the CcdB protein, is known to act on DNA gyrase in two different ways. CcdB poisons the gyrase-DNA complex, blocking the passage of polymerases and leading to double-strand breakage of the DNA. Alternatively, in cells that overexpress CcdB, the A subunit of DNA gyrase (GyrA) has been found as an inactive complex with CcdB. Both poisoning and inactivation can be prevented and reversed in the presence of the F plasmid-encoded antidote, the CcdA protein.


Pssm-ID: 429428  Cd Length: 71  Bit Score: 88.42  E-value: 3.77e-25
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 88792526   11 RKPTNLSLDSALLKEAKALGINVSRSAEAGISEAVKRHKRQRWLKENEGALASSNAYVEANGLPLAQYRQF 81
Cdd:pfam07362  1 KKATNLSLNADLLAEARALGINLSATLEEALAEEVRRRKAERWKEENREAIEAYNRFIEKHGLFADEYRSF 71
 
Name Accession Description Interval E-value
COG5302 COG5302
Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid [Mobilome: ...
 1-81 7.57e-33

Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid [Mobilome: prophages, transposons];


Pssm-ID: 444102  Cd Length: 80  Bit Score: 108.05  E-value: 7.57e-33
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 88792526  1 MQASKSiKATRKPTNLSLDSALLKEAKALGINVSRSAEAGISEAVKRHKRQRWLKENEGALASSNAYVEANGLPLAQYRQ 80
Cdd:COG5302  1 MPTTQS-QAPKKATNVSLDADLLAEARALGINLSAALEEALAEAVREAKAERWLEENAEAIEAYNRFVEEHGLPLDEYRS 79


               .
gi 88792526 81 F 81
Cdd:COG5302 80 F 80
CcdA pfam07362
Post-segregation antitoxin CcdA; This family consists of several Enterobacterial ...
 11-81 3.77e-25

Post-segregation antitoxin CcdA; This family consists of several Enterobacterial post-segregation antitoxin CcdA proteins. The F plasmid-carried bacterial toxin, the CcdB protein, is known to act on DNA gyrase in two different ways. CcdB poisons the gyrase-DNA complex, blocking the passage of polymerases and leading to double-strand breakage of the DNA. Alternatively, in cells that overexpress CcdB, the A subunit of DNA gyrase (GyrA) has been found as an inactive complex with CcdB. Both poisoning and inactivation can be prevented and reversed in the presence of the F plasmid-encoded antidote, the CcdA protein.


Pssm-ID: 429428  Cd Length: 71  Bit Score: 88.42  E-value: 3.77e-25
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 88792526   11 RKPTNLSLDSALLKEAKALGINVSRSAEAGISEAVKRHKRQRWLKENEGALASSNAYVEANGLPLAQYRQF 81
Cdd:pfam07362  1 KKATNLSLNADLLAEARALGINLSATLEEALAEEVRRRKAERWKEENREAIEAYNRFIEKHGLFADEYRSF 71
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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