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Conserved domains on  [gi|887513773|gb|AKQ49223|]
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cytochrome b (mitochondrion) [Bryodema miramae miramae]

Protein Classification

cytochrome b/b6( domain architecture ID 11475928)

cytochrome b/b6 (PetB) is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme; cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes; in plants and cyanobacteria, cytochrome b6 is analogous to cytochrome b and contains two chains: helices A-D (encoded by petB) and helices E-H (encoded by petD)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 12-366 0e+00

cytochrome b; Provisional


:

Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 689.98  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773  12 IKIINNSLIDLPAPTNISFWWNLGSLLGLCLMIQIMTGLFLTMHYTPNIESAFSSVIHICRDVNNGWMIRTMHANGASMF 91
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773  92 FICVYLHVGRGIYYGSYMYKNTWMTGTMILFLIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDIVQWVWGGFAV 171
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773 172 DNATLNRFYTFHFVLPFIIMAMVMMHLFFLHQTGSNNPTGLNSNIDKIPFHPYFTYKDSITFIITIMILMMLCLINPYML 251
Cdd:MTH00156 161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773 252 GDPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALLLSISILMIMPFYNKTKFRGIQFYPINQIMFWIMMI 331
Cdd:MTH00156 241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                        330       340       350
                 ....*....|....*....|....*....|....*
gi 887513773 332 VVCLLTWIGKRPVEEPYIMTGQILTIIYFSYFLIN 366
Cdd:MTH00156 321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 12-366 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 689.98  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773  12 IKIINNSLIDLPAPTNISFWWNLGSLLGLCLMIQIMTGLFLTMHYTPNIESAFSSVIHICRDVNNGWMIRTMHANGASMF 91
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773  92 FICVYLHVGRGIYYGSYMYKNTWMTGTMILFLIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDIVQWVWGGFAV 171
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773 172 DNATLNRFYTFHFVLPFIIMAMVMMHLFFLHQTGSNNPTGLNSNIDKIPFHPYFTYKDSITFIITIMILMMLCLINPYML 251
Cdd:MTH00156 161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773 252 GDPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALLLSISILMIMPFYNKTKFRGIQFYPINQIMFWIMMI 331
Cdd:MTH00156 241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                        330       340       350
                 ....*....|....*....|....*....|....*
gi 887513773 332 VVCLLTWIGKRPVEEPYIMTGQILTIIYFSYFLIN 366
Cdd:MTH00156 321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
12-365 4.75e-130

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 378.36  E-value: 4.75e-130
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773  12 IKIINNSLIDLPAPTNISFWWNLGSLLGLCLMIQIMTGLFLTMHYTPNIESAFSSVIHICRDVNNGWMIRTMHANGASMF 91
Cdd:COG1290   20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773  92 FICVYLHVGRGIYYGSymYKN----TWMTGTMILFLIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDIVQWVWG 167
Cdd:COG1290  100 FAAVYLHMFRGFFYGA--YKKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFG 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773 168 GFAVDNATLNRFYTFH-FVLPFIIMAMVMMHLFFLHQTGSNNPTG----LNSNIDKIPFHPYFTYKDSITFIITIMILMM 242
Cdd:COG1290  178 GEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFAL 257

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773 243 LCLINPymLGDPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIP--NKLGGVIALLLSISILMIMPFYNKTKFRGIQFYP 320
Cdd:COG1290  258 LAFFFP--INPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRP 335

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*
gi 887513773 321 INQIMFWIMMIVVCLLTWIGKRPveEPYIMTGQILTIIYFSYFLI 365
Cdd:COG1290  336 VRTALGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFLI 378
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 10-207 1.50e-89

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 268.08  E-value: 1.50e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773  10 PMIKIINNSLIDLPAPTNISFWWNLGSLLGLCLMIQIMTGLFLTMHYTPNIESAFSSVIHICRDVNNGWMIRTMHANGAS 89
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773  90 MFFICVYLHVGRGIYYGSYM--YKNTWMTGTMILFLIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDIVQWVWG 167
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 887513773 168 GFAVDNATLNRFYTFHFVLPFIIMAMVMMHLFFLHQTGSN 207
Cdd:cd00284  161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
19-205 2.08e-80

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 244.60  E-value: 2.08e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773   19 LIDLPAPTNISFWWNLGSLLGLCLMIQIMTGLFLTMHYTPNIESAFSSVIHICRDVNNGWMIRTMHANGASMFFICVYLH 98
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773   99 VGRGIYYG--SYMYKNTWMTGTMILFLIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDIVQWVWGGFAVDNATL 176
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 887513773  177 NRFYTFHFVLPFIIMAMVMMHLFFLHQTG 205
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 236-340 1.17e-10

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 59.43  E-value: 1.17e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773  236 TIMILMMLCLINPYMLGDPdnfvpANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALLLSISILMIMPFY-NKTKFR 314
Cdd:TIGR01156  47 TIACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIeNVNKFQ 121

                          90       100
                  ....*....|....*....|....*.
gi 887513773  315 GIQFYPINQIMFWIMMIVVcllTWIG 340
Cdd:TIGR01156 122 NPFRRPVATTVFLFGTVVA---LWLG 144
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 12-366 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 689.98  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773  12 IKIINNSLIDLPAPTNISFWWNLGSLLGLCLMIQIMTGLFLTMHYTPNIESAFSSVIHICRDVNNGWMIRTMHANGASMF 91
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773  92 FICVYLHVGRGIYYGSYMYKNTWMTGTMILFLIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDIVQWVWGGFAV 171
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773 172 DNATLNRFYTFHFVLPFIIMAMVMMHLFFLHQTGSNNPTGLNSNIDKIPFHPYFTYKDSITFIITIMILMMLCLINPYML 251
Cdd:MTH00156 161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773 252 GDPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALLLSISILMIMPFYNKTKFRGIQFYPINQIMFWIMMI 331
Cdd:MTH00156 241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                        330       340       350
                 ....*....|....*....|....*....|....*
gi 887513773 332 VVCLLTWIGKRPVEEPYIMTGQILTIIYFSYFLIN 366
Cdd:MTH00156 321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
CYTB MTH00145
cytochrome b; Provisional
 1-377 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 617.30  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773   1 MNKPLRLKHPMIKIINNSLIDLPAPTNISFWWNLGSLLGLCLMIQIMTGLFLTMHYTPNIESAFSSVIHICRDVNNGWMI 80
Cdd:MTH00145   1 MLSPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773  81 RTMHANGASMFFICVYLHVGRGIYYGSYMYKNTWMTGTMILFLIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTD 160
Cdd:MTH00145  81 RSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKM 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773 161 IVQWVWGGFAVDNATLNRFYTFHFVLPFIIMAMVMMHLFFLHQTGSNNPTGLNSNIDKIPFHPYFTYKDSITFIITIMIL 240
Cdd:MTH00145 161 LVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773 241 MMLCLINPYMLGDPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALLLSISILMIMPFYNKTKFRGIQFYP 320
Cdd:MTH00145 241 VFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYP 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 887513773 321 INQIMFWIMMIVVCLLTWIGKRPVEEPYIMTGQILTIIYFSYFLINIHIAKMWDTLI 377
Cdd:MTH00145 321 LNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLILPLVQKLWDNIL 377
CYTB MTH00119
cytochrome b; Provisional
 1-365 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 611.14  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773   1 MNKPLRLKHPMIKIINNSLIDLPAPTNISFWWNLGSLLGLCLMIQIMTGLFLTMHYTPNIESAFSSVIHICRDVNNGWMI 80
Cdd:MTH00119   1 MAPNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773  81 RTMHANGASMFFICVYLHVGRGIYYGSYMYKNTWMTGTMILFLIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTD 160
Cdd:MTH00119  81 RNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQT 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773 161 IVQWVWGGFAVDNATLNRFYTFHFVLPFIIMAMVMMHLFFLHQTGSNNPTGLNSNIDKIPFHPYFTYKDSITFIITIMIL 240
Cdd:MTH00119 161 LVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773 241 MMLCLINPYMLGDPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALLLSISILMIMPFYNKTKFRGIQFYP 320
Cdd:MTH00119 241 LTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRP 320

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*
gi 887513773 321 INQIMFWIMMIVVCLLTWIGKRPVEEPYIMTGQILTIIYFSYFLI 365
Cdd:MTH00119 321 LSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLI 365
CYTB MTH00131
cytochrome b; Provisional
 5-365 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 608.58  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773   5 LRLKHPMIKIINNSLIDLPAPTNISFWWNLGSLLGLCLMIQIMTGLFLTMHYTPNIESAFSSVIHICRDVNNGWMIRTMH 84
Cdd:MTH00131   4 LRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLH 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773  85 ANGASMFFICVYLHVGRGIYYGSYMYKNTWMTGTMILFLIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDIVQW 164
Cdd:MTH00131  84 ANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQW 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773 165 VWGGFAVDNATLNRFYTFHFVLPFIIMAMVMMHLFFLHQTGSNNPTGLNSNIDKIPFHPYFTYKDSITFIITIMILMMLC 244
Cdd:MTH00131 164 IWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLA 243

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773 245 LINPYMLGDPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALLLSISILMIMPFYNKTKFRGIQFYPINQI 324
Cdd:MTH00131 244 LFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQF 323

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|.
gi 887513773 325 MFWIMMIVVCLLTWIGKRPVEEPYIMTGQILTIIYFSYFLI 365
Cdd:MTH00131 324 LFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLV 364
CYTB MTH00191
cytochrome b; Provisional
 5-365 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 608.45  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773   5 LRLKHPMIKIINNSLIDLPAPTNISFWWNLGSLLGLCLMIQIMTGLFLTMHYTPNIESAFSSVIHICRDVNNGWMIRTMH 84
Cdd:MTH00191   1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773  85 ANGASMFFICVYLHVGRGIYYGSYMYKNTWMTGTMILFLIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDIVQW 164
Cdd:MTH00191  81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQW 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773 165 VWGGFAVDNATLNRFYTFHFVLPFIIMAMVMMHLFFLHQTGSNNPTGLNSNIDKIPFHPYFTYKDSITFIITIMILMMLC 244
Cdd:MTH00191 161 LWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLV 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773 245 LINPYMLGDPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALLLSISILMIMPFYNKTKFRGIQFYPINQI 324
Cdd:MTH00191 241 LFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQV 320

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|.
gi 887513773 325 MFWIMMIVVCLLTWIGKRPVEEPYIMTGQILTIIYFSYFLI 365
Cdd:MTH00191 321 VFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLL 361
CYTB MTH00074
cytochrome b; Provisional
 1-374 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 602.06  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773   1 MNKPLRLKHPMIKIINNSLIDLPAPTNISFWWNLGSLLGLCLMIQIMTGLFLTMHYTPNIESAFSSVIHICRDVNNGWMI 80
Cdd:MTH00074   1 MAHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLM 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773  81 RTMHANGASMFFICVYLHVGRGIYYGSYMYKNTWMTGTMILFLIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTD 160
Cdd:MTH00074  81 RNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDT 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773 161 IVQWVWGGFAVDNATLNRFYTFHFVLPFIIMAMVMMHLFFLHQTGSNNPTGLNSNIDKIPFHPYFTYKDSITFIITIMIL 240
Cdd:MTH00074 161 LVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTAL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773 241 MMLCLINPYMLGDPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALLLSISILMIMPFYNKTKFRGIQFYP 320
Cdd:MTH00074 241 ALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRP 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....
gi 887513773 321 INQIMFWIMMIVVCLLTWIGKRPVEEPYIMTGQILTIIYFSYFLINIHIAKMWD 374
Cdd:MTH00074 321 LTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLE 374
CYTB MTH00100
cytochrome b; Provisional
 4-372 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 601.63  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773   4 PLRLKHPMIKIINNSLIDLPAPTNISFWWNLGSLLGLCLMIQIMTGLFLTMHYTPNIESAFSSVIHICRDVNNGWMIRTM 83
Cdd:MTH00100   3 NIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYL 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773  84 HANGASMFFICVYLHVGRGIYYGSYMYKNTWMTGTMILFLIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDIVQ 163
Cdd:MTH00100  83 HANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVE 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773 164 WVWGGFAVDNATLNRFYTFHFVLPFIIMAMVMMHLFFLHQTGSNNPTGLNSNIDKIPFHPYFTYKDSITFIITIMILMML 243
Cdd:MTH00100 163 WIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLL 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773 244 CLINPYMLGDPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALLLSISILMIMPFYNKTKFRGIQFYPINQ 323
Cdd:MTH00100 243 VLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQ 322

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*....
gi 887513773 324 IMFWIMMIVVCLLTWIGKRPVEEPYIMTGQILTIIYFSYFLINIHIAKM 372
Cdd:MTH00100 323 CLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASL 371
CYTB MTH00016
cytochrome b; Validated
 1-378 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 593.96  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773   1 MNKPLRLKHPMIKIINNSLIDLPAPTNISFWWNLGSLLGLCLMIQIMTGLFLTMHYTPNIESAFSSVIHICRDVNNGWMI 80
Cdd:MTH00016   1 MFSPMRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773  81 RTMHANGASMFFICVYLHVGRGIYYGSYMYKNTWMTGTMILFLIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTD 160
Cdd:MTH00016  81 RNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKM 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773 161 IVQWVWGGFAVDNATLNRFYTFHFVLPFIIMAMVMMHLFFLHQTGSNNPTGLNSNIDKIPFHPYFTYKDSITFIITIMIL 240
Cdd:MTH00016 161 LVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773 241 MMLCLINPYMLGDPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALLLSISILMIMPFYNKTKFRGIQFYP 320
Cdd:MTH00016 241 LSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYP 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 887513773 321 INQIMFWIMMIVVCLLTWIGKRPVEEPYIMTGQILTIIYFSYFLINIHIAKMWDTLIK 378
Cdd:MTH00016 321 LNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYFMINPLLMKLWDKLLK 378
CYTB MTH00034
cytochrome b; Validated
 4-365 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 553.16  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773   4 PLRLKHPMIKIINNSLIDLPAPTNISFWWNLGSLLGLCLMIQIMTGLFLTMHYTPNIESAFSSVIHICRDVNNGWMIRTM 83
Cdd:MTH00034   3 PLRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNI 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773  84 HANGASMFFICVYLHVGRGIYYGSYMYKNTWMTGTMILFLIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDIVQ 163
Cdd:MTH00034  83 HANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQ 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773 164 WVWGGFAVDNATLNRFYTFHFVLPFIIMAMVMMHLFFLHQTGSNNPTGLNSNIDKIPFHPYFTYKDSITFIITIMILMML 243
Cdd:MTH00034 163 WIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSL 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773 244 CLINPYMLGDPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALLLSISILMIMPFYNKTKFRGIQFYPINQ 323
Cdd:MTH00034 243 ALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQ 322

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|..
gi 887513773 324 IMFWIMMIVVCLLTWIGKRPVEEPYIMTGQILTIIYFSYFLI 365
Cdd:MTH00034 323 IAFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLF 364
CYTB MTH00224
cytochrome b; Provisional
 1-378 0e+00

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 522.17  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773   1 MNKPLRLKHPMIKIINNSLIDLPAPTNISFWWNLGSLLGLCLMIQIMTGLFLTMHYTPNIESAFSSVIHICRDVNNGWMI 80
Cdd:MTH00224   1 MFKPFRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773  81 RTMHANGASMFFICVYLHVGRGIYYGSYMYKNTWMTGTMILFLIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTD 160
Cdd:MTH00224  81 RSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKD 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773 161 IVQWVWGGFAVDNATLNRFYTFHFVLPFIIMAMVMMHLFFLHQTGSNNPTGLNSNIDKIPFHPYFTYKDSITFIITIMIL 240
Cdd:MTH00224 161 LVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773 241 MMLCLINPYMLGDPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALLLSISILMIMPFYNKTKFRGIQFYP 320
Cdd:MTH00224 241 SLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYP 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 887513773 321 INQIMFWIMMIVVCLLTWIGKRPVEEPYIMTGQILTIIYFSYFLINIHIAKMWDTLIK 378
Cdd:MTH00224 321 LNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFSYFIISPAISKLWDDLLN 378
CYTB MTH00022
cytochrome b; Validated
 4-367 0e+00

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 506.55  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773   4 PLRLKHPMIKIINNSLIDLPAPTNISFWWNLGSLLGLCLMIQIMTGLFLTMHYTPNIESAFSSVIHICRDVNNGWMIRTM 83
Cdd:MTH00022   2 PLRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773  84 HANGASMFFICVYLHVGRGIYYGSYMYKNTWMTGTMILFLIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDIVQ 163
Cdd:MTH00022  82 HANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQ 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773 164 WVWGGFAVDNATLNRFYTFHFVLPFIIMAMVMMHLFFLHQTGSNNPTGLNSNIDKIPFHPYFTYKDSITFIITIMILMML 243
Cdd:MTH00022 162 WVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFI 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773 244 CLINPYMLGDPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALLLSISILMIMPFYNKTKFRGIQFYPINQ 323
Cdd:MTH00022 242 VYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGR 321

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....
gi 887513773 324 IMFWIMMIVVCLLTWIGKRPVEEPYIMTGQILTIIYFSYFLINI 367
Cdd:MTH00022 322 MAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLI 365
CYTB MTH00053
cytochrome b; Provisional
 1-374 1.73e-176

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 495.77  E-value: 1.73e-176
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773   1 MNKPLRLKHPMIKIINNSLIDLPAPTNISFWWNLGSLLGLCLMIQIMTGLFLTMHYTPNIESAFSSVIHICRDVNNGWMI 80
Cdd:MTH00053   1 MTKTIRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFIL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773  81 RTMHANGASMFFICVYLHVGRGIYYGSYMYKNTWMTGTMILFLIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTD 160
Cdd:MTH00053  81 RYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDD 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773 161 IVQWVWGGFAVDNATLNRFYTFHFVLPFIIMAMVMMHLFFLHQTGSNNPTGLNSNIDKIPFHPYFTYKDSITFIITIMIL 240
Cdd:MTH00053 161 IVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773 241 MMLCLINPYMLGDPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALLLSISILMIMPFYNKTKFRGIQFYP 320
Cdd:MTH00053 241 SIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRP 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....
gi 887513773 321 INQIMFWIMMIVVCLLTWIGKRPVEEPYIMTGQILTIIYFSYFLINIHIAKMWD 374
Cdd:MTH00053 321 LSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPLAGYLE 374
CYTB MTH00033
cytochrome b; Provisional
 17-365 1.13e-134

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 389.68  E-value: 1.13e-134
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773  17 NSLIDLPAPTNISFWWNLGSLLGLCLMIQIMTGLFLTMHYTPNIESAFSSVIHICRDVNNGWMIRTMHANGASMFFICVY 96
Cdd:MTH00033  13 NDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVY 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773  97 LHVGRGIYYGSYMYKNTWMTGTMILFLIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDIVQWVWGGFAVDNATL 176
Cdd:MTH00033  93 CHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTL 172

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773 177 NRFYTFHFVLPFIIMAMVMMHLFFLHQTGSNNPTGLNSNIDKIPFHPYFTYKDSITFIITIMILMMLClINPY---MLGD 253
Cdd:MTH00033 173 NRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIG-IEPRietLLQD 251

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773 254 PDNFVPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALLLSISILMIMPFYNKTKFRGIQFYPINQIMFWIMMIVV 333
Cdd:MTH00033 252 PENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDF 331

                        330       340       350
                 ....*....|....*....|....*....|...
gi 887513773 334 CLLTWIGKRPV-EEPYIMTGQILTIIYFSYFLI 365
Cdd:MTH00033 332 IILTWIGSAPAgADPYVLIGRIATIFYFGYFLV 364
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
12-365 4.75e-130

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 378.36  E-value: 4.75e-130
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773  12 IKIINNSLIDLPAPTNISFWWNLGSLLGLCLMIQIMTGLFLTMHYTPNIESAFSSVIHICRDVNNGWMIRTMHANGASMF 91
Cdd:COG1290   20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773  92 FICVYLHVGRGIYYGSymYKN----TWMTGTMILFLIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDIVQWVWG 167
Cdd:COG1290  100 FAAVYLHMFRGFFYGA--YKKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFG 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773 168 GFAVDNATLNRFYTFH-FVLPFIIMAMVMMHLFFLHQTGSNNPTG----LNSNIDKIPFHPYFTYKDSITFIITIMILMM 242
Cdd:COG1290  178 GEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFAL 257

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773 243 LCLINPymLGDPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIP--NKLGGVIALLLSISILMIMPFYNKTKFRGIQFYP 320
Cdd:COG1290  258 LAFFFP--INPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRP 335

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*
gi 887513773 321 INQIMFWIMMIVVCLLTWIGKRPveEPYIMTGQILTIIYFSYFLI 365
Cdd:COG1290  336 VRTALGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFLI 378
CYTB MTH00086
cytochrome b; Provisional
 13-365 3.35e-129

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 374.66  E-value: 3.35e-129
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773  13 KIINNSLIDLPAPTNISFWWNLGSLLGLCLMIQIMTGLFLTMHYTPNIESAFSSVIHICRDVNNGWMIRTMHANGASMFF 92
Cdd:MTH00086   1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773  93 ICVYLHVGRGIYYGSYMYKNTWMTGTMILFLIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDIVQWVWGGFAVD 172
Cdd:MTH00086  81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773 173 NATLNRFYTFHFVLPFIIMAMVMMHLFFLHQTGSNNPTGLNSNIDKIPFHPYFTYKDSITFIItIMILMMLCLINPYMLG 252
Cdd:MTH00086 161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNIIF-WLVFIIFSLFYPFNLG 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773 253 DPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALLLSISILMIMPFYNktkFRGIQFYPINQIMFWIMMIV 332
Cdd:MTH00086 240 DPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVN---NYTSCLNKLNKFLVFSFIVV 316

                        330       340       350
                 ....*....|....*....|....*....|...
gi 887513773 333 VCLLTWIGKRPVEEPYIMTGQILTIIYFSYFLI 365
Cdd:MTH00086 317 NVILSWLGQCLVEYPFLFLSQIFSFIYFFLILL 349
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 10-207 1.50e-89

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 268.08  E-value: 1.50e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773  10 PMIKIINNSLIDLPAPTNISFWWNLGSLLGLCLMIQIMTGLFLTMHYTPNIESAFSSVIHICRDVNNGWMIRTMHANGAS 89
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773  90 MFFICVYLHVGRGIYYGSYM--YKNTWMTGTMILFLIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDIVQWVWG 167
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 887513773 168 GFAVDNATLNRFYTFHFVLPFIIMAMVMMHLFFLHQTGSN 207
Cdd:cd00284  161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
CYTB MTH00046
cytochrome b; Validated
 11-358 9.13e-84

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 258.76  E-value: 9.13e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773  11 MIKIINNSLIDLPAPTNISFWWNLGSLLGLCLMIQIMTGLFLTMHYTPNIESAFSSVIHICRDVNNGWMIRTMHANGASM 90
Cdd:MTH00046   1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773  91 FFICVYLHVGRGIYYGSYMYKNTWMTGTMILFLIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDIVQWVWGGFA 170
Cdd:MTH00046  81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773 171 VDNATLNRFYTFHFVLPFIIMAMVMMHLFFLHQTGSNNPTGLNSNI-DKIPFHPYFTYKDSITFIITIMILMMLCLINPY 249
Cdd:MTH00046 161 VTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGYsDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPD 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773 250 MLGDPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIaLLLSISILMIMPFYNKTKFRGIqfypINQIMFWIM 329
Cdd:MTH00046 241 LVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGGLV-LVLSFLFFLWVPTFNGSSVYSV----WRQVNFWLI 315

                        330       340
                 ....*....|....*....|....*....
gi 887513773 330 MIVVCLLTWIGKRPVEEPYIMTGQILTII 358
Cdd:MTH00046 316 VSLFFSLSYLGGCHPEYPYLLISQLFSVL 344
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
19-205 2.08e-80

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 244.60  E-value: 2.08e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773   19 LIDLPAPTNISFWWNLGSLLGLCLMIQIMTGLFLTMHYTPNIESAFSSVIHICRDVNNGWMIRTMHANGASMFFICVYLH 98
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773   99 VGRGIYYG--SYMYKNTWMTGTMILFLIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDIVQWVWGGFAVDNATL 176
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 887513773  177 NRFYTFHFVLPFIIMAMVMMHLFFLHQTG 205
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
89-254 2.73e-49

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 163.57  E-value: 2.73e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773   89 SMFFICVYLHVGRGIYYGSYMY--KNTWMTGTMILFLIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDIVQWVW 166
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKprELNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773  167 GGFAVDNATLNRFYTFHF-VLPFIIMAMVMMHLFFLHQTGSNNPTGLNSNIDKIPFHPYFTYKDSITFIITIMILMMLCL 245
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 887513773  246 INPYMLGDP 254
Cdd:pfam13631 161 INPIWLGGP 169
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 208-354 5.11e-49

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 162.43  E-value: 5.11e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773 208 NPTGLNSNIDKIPFHPYFTYKDSITFIITIMILMMLCLINPYMLGDPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIPN 287
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 887513773 288 KLGGVIALLLSISILMIMPFYNKTKFRGiQFYPINQIMFWIMMIVVCLLTWIGKRPVEEPYIMTGQI 354
Cdd:cd00290   81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQL 146
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
259-359 1.36e-42

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 143.77  E-value: 1.36e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773  259 PANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALLLSISILMIMPFYNKTKFRGIQFYPINQIMFWIMMIVVCLLTW 338
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 887513773  339 IGKRPVEEPYIMTGQILTIIY 359
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
PRK03735 PRK03735
cytochrome b6; Provisional
 23-209 5.84e-40

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 141.39  E-value: 5.84e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773  23 PAPTNISFWWNLGSLLGLCLMIQIMTGLFLTMHYTPNIESAFSSVIHICRDVNNGWMIRTMHANGASMFFICVYLHVGRG 102
Cdd:PRK03735  33 PAHHFSAFVYCFGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRV 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773 103 IYYGSYMYKN--TWMTGTMILFLIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDIVQWVWGGFAVDNATLNRFY 180
Cdd:PRK03735 113 FFTGGYKKPRelNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFF 192

                        170       180       190
                 ....*....|....*....|....*....|
gi 887513773 181 TFH-FVLPFIIMAMVMMHLFFLHQTGSNNP 209
Cdd:PRK03735 193 AIHvFFLPWALAVLMLAHFLMIRKQGISGP 222
petB CHL00070
cytochrome b6
 25-209 4.36e-34

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 125.60  E-value: 4.36e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773  25 PTNISFWWNLGSLLGLCLMIQIMTGLFLTMHYTPNIESAFSSVIHICRDVNNGWMIRTMHANGASMFFICVYLHVGRGIY 104
Cdd:CHL00070  27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773 105 YGSYM--YKNTWMTGTMILFLIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDIVQWVWGGFAVDNATLNRFYTF 182
Cdd:CHL00070 107 TGGFKkpRELTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                        170       180
                 ....*....|....*....|....*...
gi 887513773 183 H-FVLPFIIMAMVMMHLFFLHQTGSNNP 209
Cdd:CHL00070 187 HtFVLPLLTAVFMLMHFLMIRKQGISGP 214
petD CHL00058
cytochrome b6/f complex subunit IV
 236-340 3.66e-12

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 63.87  E-value: 3.66e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773 236 TIMILMMLCLINPYMLGDPdnfvpANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALLLSISILMIMPFY-NKTKFR 314
Cdd:CHL00058  47 TIACNVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLeNVNKFQ 121

                         90       100
                 ....*....|....*....|....*.
gi 887513773 315 GIQFYPINQIMFWIMMIVVcllTWIG 340
Cdd:CHL00058 122 NPFRRPVATTVFLIGTAVA---LWLG 144
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 236-346 4.87e-12

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 63.66  E-value: 4.87e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773 236 TIMILMMLCLINPYMLGDPdnfvpANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALLLSISILMIMPFY-NKTKFR 314
Cdd:COG5679   48 TIALCIGLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIeNVNKFQ 122

                         90       100       110
                 ....*....|....*....|....*....|..
gi 887513773 315 GIQFYPINQIMFWIMMIVVCLLTWIGKRPVEE 346
Cdd:COG5679  123 NPFRRPVATAVFLFGTLVTLWLGIGAALPIDK 154
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 236-340 1.17e-10

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 59.43  E-value: 1.17e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513773  236 TIMILMMLCLINPYMLGDPdnfvpANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALLLSISILMIMPFY-NKTKFR 314
Cdd:TIGR01156  47 TIACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIeNVNKFQ 121

                          90       100
                  ....*....|....*....|....*.
gi 887513773  315 GIQFYPINQIMFWIMMIVVcllTWIG 340
Cdd:TIGR01156 122 NPFRRPVATTVFLFGTVVA---LWLG 144
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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