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Conserved domains on  [gi|887513768|gb|AKQ49218|]
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NADH dehydrogenase subunit 3 (mitochondrion) [Bryodema miramae miramae]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009588)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-116 3.07e-35

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 116.88  E-value: 3.07e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513768   1 MMFLMTSISISFILPMLVMMIATTLSKKSINDREKSSPFECSFDPKSSAYMPFSLQFFLIAVMFFIYDVEIAMILPIVII 80
Cdd:MTH00148   1 MLSILLSLLFALILSPVLLLLGLVLSKRSYSDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQS 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 887513768  81 SKTSNISMCTMSTMIFIMILLTGLYYEWNQGALKWA 116
Cdd:MTH00148  81 LGSSFSVWSLTSLFIFLLILILGLFHEWNEGSLDWV 116
 
Name Accession Description Interval E-value
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-116 3.07e-35

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 116.88  E-value: 3.07e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513768   1 MMFLMTSISISFILPMLVMMIATTLSKKSINDREKSSPFECSFDPKSSAYMPFSLQFFLIAVMFFIYDVEIAMILPIVII 80
Cdd:MTH00148   1 MLSILLSLLFALILSPVLLLLGLVLSKRSYSDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQS 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 887513768  81 SKTSNISMCTMSTMIFIMILLTGLYYEWNQGALKWA 116
Cdd:MTH00148  81 LGSSFSVWSLTSLFIFLLILILGLFHEWNEGSLDWV 116
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
19-114 8.91e-22

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 82.09  E-value: 8.91e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513768   19 MMIATTLSKKSINdREKSSPFECSFDPKSSAYMPFSLQFFLIAVMFFIYDVEIAMILPIVIISKTSNISMcTMSTMIFIM 98
Cdd:pfam00507   1 LLLSRLLGPKRPN-PEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGWFG-FVEMLIFIA 78

                          90
                  ....*....|....*.
gi 887513768   99 ILLTGLYYEWNQGALK 114
Cdd:pfam00507  79 ILLVGLVYAWKKGALE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 10-115 4.87e-20

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 78.24  E-value: 4.87e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513768  10 ISFILPMLVMMIATTLSKKSiNDREKSSPFECSFDPKSSAYMPFSLQFFLIAVMFFIYDVEIAMILPIVIISKTSNISMc 89
Cdd:COG0838   14 VALGLALAMLLLSRLLGPKR-PNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWAVVFRELGWFG- 91

                         90       100
                 ....*....|....*....|....*.
gi 887513768  90 TMSTMIFIMILLTGLYYEWNQGALKW 115
Cdd:COG0838   92 LIEMLVFIAILLVGLIYAWKKGALEW 117
 
Name Accession Description Interval E-value
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-116 3.07e-35

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 116.88  E-value: 3.07e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513768   1 MMFLMTSISISFILPMLVMMIATTLSKKSINDREKSSPFECSFDPKSSAYMPFSLQFFLIAVMFFIYDVEIAMILPIVII 80
Cdd:MTH00148   1 MLSILLSLLFALILSPVLLLLGLVLSKRSYSDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQS 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 887513768  81 SKTSNISMCTMSTMIFIMILLTGLYYEWNQGALKWA 116
Cdd:MTH00148  81 LGSSFSVWSLTSLFIFLLILILGLFHEWNEGSLDWV 116
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 1-116 5.52e-34

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 113.93  E-value: 5.52e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513768   1 MMFLMTSISISFILPMLVMMIATTLSKKSINDREKSSPFECSFDPKSSAYMPFSLQFFLIAVMFFIYDVEIAMILPIVII 80
Cdd:MTH00202   1 MLLILFMSILSILISSLLFLVSWMLSFRSLMDREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLV 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 887513768  81 SKTSNISMCTMSTMIFIMILLTGLYYEWNQGALKWA 116
Cdd:MTH00202  81 LKSSWSKGGLLGGTIFLLILIGGLIHEWKEGSLDWV 116
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 4-115 2.19e-33

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 112.18  E-value: 2.19e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513768   4 LMTSISISFILPMLVMMIATTLSKKSINDREKSSPFECSFDPKSSAYMPFSLQFFLIAVMFFIYDVEIAMILPIVIISKT 83
Cdd:MTH00161   2 ILIILLIILLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFKT 81

                         90       100       110
                 ....*....|....*....|....*....|..
gi 887513768  84 SNISMCTMSTMIFIMILLTGLYYEWNQGALKW 115
Cdd:MTH00161  82 SNMMSWLITSSFFILILLLGLYYEWNQGALEW 113
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 1-116 2.57e-30

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 104.56  E-value: 2.57e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513768   1 MMFLMTSISISFILPMLVMMIATTLSKKSINDREKSSPFECSFDPKSSAYMPFSLQFFLIAVMFFIYDVEIAMILPIVII 80
Cdd:MTH00012   1 MSLMMIPMMISLILPPLVLGAAWVLAARSTADREKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTI 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 887513768  81 SKTSNISMCTMSTMIFIMILLTGLYYEWNQGALKWA 116
Cdd:MTH00012  81 LMTSTSKTVVYTSILFLLILVIGLIHEWREGSLDWS 116
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 2-116 2.74e-28

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 99.24  E-value: 2.74e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513768   2 MFLMTSISISFILPMLVMMIATTLSKKSINdREKSSPFECSFDPKSSAYMPFSLQFFLIAVMFFIYDVEIAMILPIVIIS 81
Cdd:MTH00106   1 MNLMLTLLTNTLLASLLVLIAFWLPQLNIY-SEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAS 79

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 887513768  82 KTSNISMCTMSTMIFIMILLTGLYYEWNQGALKWA 116
Cdd:MTH00106  80 QTNNLNTMLTMALLLISLLALSLAYEWTQKGLEWT 114
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 2-116 9.62e-27

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 95.33  E-value: 9.62e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513768   2 MFLMTSISISFILPMLVMMIATTLSKKSiNDREKSSPFECSFDPKSSAYMPFSLQFFLIAVMFFIYDVEIAMILPIVIIS 81
Cdd:MTH00113   1 MNLISMLTISLALSTILTTLNFWLTQTK-PDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAI 79

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 887513768  82 KTSNISMCTMSTMIFIMILLTGLYYEWNQGALKWA 116
Cdd:MTH00113  80 NLTTPTTTLTWATIILTLLTLGLIYEWLQGGLEWA 114
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 1-116 1.52e-26

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 94.99  E-value: 1.52e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513768   1 MMFLMTSISISFILPMLVMMIATTLSKKSiNDREKSSPFECSFDPKSSAYMPFSLQFFLIAVMFFIYDVEIAMILPIVII 80
Cdd:MTH00136   1 MNLITTILTITIALSLILAIVSFWLPQMT-PDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWG 79

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 887513768  81 SKTSNISMcTMSTMIFIMILLT-GLYYEWNQGALKWA 116
Cdd:MTH00136  80 DQLPSPLL-TFFWATAVLILLTlGLIYEWLQGGLEWA 115
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 1-117 3.39e-25

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 91.58  E-value: 3.39e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513768   1 MMFLMTSISISFILPMLVMMIATTLSKKSInDREKSSPFECSFDPKSSAYMPFSLQFFLIAVMFFIYDVEIAMILPIVII 80
Cdd:MTH00042   1 MTNLIFFLLIILILTSLLLLAGHFLPSRSP-DLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPA 79

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 887513768  81 SKTSNISMCTMSTMIFIMILLTGLYYEWNQGALKWAN 117
Cdd:MTH00042  80 TLITNPSTLLPISLIFLIILTIGLVYEWVNGGLEWAE 116
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 1-116 8.38e-23

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 85.43  E-value: 8.38e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513768   1 MMFLMTSISISFILPMLVMMIATtlskkSINDREKSSPFECSFDPKSSAYMPFSLQFFLIAVMFFIYDVEIAMILPIVII 80
Cdd:MTH00069   3 MLMLLISTILSLILITISFWLPL-----NNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTPWA 77

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 887513768  81 SKTsNISMCTMSTMIFIMILLT-GLYYEWNQGALKWA 116
Cdd:MTH00069  78 SQL-NTPTNTLFWSTLILILLTlGLIYEWIQGGLEWA 113
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 1-115 2.12e-22

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 84.18  E-value: 2.12e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513768   1 MMFLMTSISISFILPMLVMMIATTLSKkSINDREKSSPFECSFDPKSSAYMPFSLQFFLIAVMFFIYDVEIAMILPIVII 80
Cdd:MTH00203   1 MNLIMLFFLIALLLSLILLFIAFWLPK-VNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWS 79

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 887513768  81 SKTSNISmcTMSTMIFIMILLTGLYYEWNQGALKW 115
Cdd:MTH00203  80 NQLSSLS--LLLAFLFLILLTLGLIYEWLQGGLEW 112
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
19-114 8.91e-22

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 82.09  E-value: 8.91e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513768   19 MMIATTLSKKSINdREKSSPFECSFDPKSSAYMPFSLQFFLIAVMFFIYDVEIAMILPIVIISKTSNISMcTMSTMIFIM 98
Cdd:pfam00507   1 LLLSRLLGPKRPN-PEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGWFG-FVEMLIFIA 78

                          90
                  ....*....|....*.
gi 887513768   99 ILLTGLYYEWNQGALK 114
Cdd:pfam00507  79 ILLVGLVYAWKKGALE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 10-115 4.87e-20

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 78.24  E-value: 4.87e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513768  10 ISFILPMLVMMIATTLSKKSiNDREKSSPFECSFDPKSSAYMPFSLQFFLIAVMFFIYDVEIAMILPIVIISKTSNISMc 89
Cdd:COG0838   14 VALGLALAMLLLSRLLGPKR-PNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWAVVFRELGWFG- 91

                         90       100
                 ....*....|....*....|....*.
gi 887513768  90 TMSTMIFIMILLTGLYYEWNQGALKW 115
Cdd:COG0838   92 LIEMLVFIAILLVGLIYAWKKGALEW 117
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 10-116 5.17e-20

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 78.37  E-value: 5.17e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513768  10 ISFILPMLVMMIATTLSKKSiNDREKSSPFECSFDPKSSAYMPFSLQFFLIAVMFFIYDVEIAMILP-IVIISKTSNISM 88
Cdd:PRK06602  17 VAIGLGILLLVAGKLLGPRA-PDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFLFPwAVSFREIGWLGF 95

                         90       100
                 ....*....|....*....|....*...
gi 887513768  89 CTMstMIFIMILLTGLYYEWNQGALKWA 116
Cdd:PRK06602  96 VEA--MIFILVLLVGLVYLWRKGALDWE 121
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 8-115 1.42e-18

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 74.71  E-value: 1.42e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513768   8 ISISFILPMLVMMIATTLSKKSiNDREKSSPFECSFDPKSSAYMPFSLQFFLIAVMFFIYDVEIAMILP-IVIISKTSNI 86
Cdd:MTH00018   7 LIFSVVLSALFSGASYFLGVKQ-PDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFPwCVLYNQIAPF 85

                         90       100
                 ....*....|....*....|....*....
gi 887513768  87 SMCTMstMIFIMILLTGLYYEWNQGALKW 115
Cdd:MTH00018  86 GFWTM--VGFLFILTLGLIYEWIKGGLEW 112
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 32-115 4.31e-15

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 65.89  E-value: 4.31e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513768  32 DREKSSPFECSFDPKSSAYMPFSLQFFLIAVMFFIYDVEIAMILPIVIISktSNISMCTMSTMIFIMILLT-GLYYEWNQ 110
Cdd:MTH00055  35 DSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPWCVVY--NQIGLFGFWVMYLFLIILTiGLIYEWVK 112


                 ....*
gi 887513768 111 GALKW 115
Cdd:MTH00055 113 GGLEW 117
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 2-115 2.68e-12

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 58.79  E-value: 2.68e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513768   2 MFLMTSISISFILpmLVMMIATTLSKKSIN----DREKSSPFECSFDPKSSAYMPFSLQFFLIAVMFFIYDVEIAMILPI 77
Cdd:MTH00030   8 IFFSTLLGVGIIL--LLVSISFTLGNSRIGltkpDSEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLFPW 85

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 887513768  78 VIISKTSNIsMCTMSTMIFIMILLTGLYYEWNQGALKW 115
Cdd:MTH00030  86 SIVFNQLNL-FSFWIVYTFLIVLAIGLAYEWIKGGLEW 122
ndhC CHL00022
NADH dehydrogenase subunit 3
 10-115 1.54e-08

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 48.83  E-value: 1.54e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513768  10 ISFILPMLVMMIATTLSKKSINDrEKSSPFECSFDPKSSAYMPFSLQFFLIAVMFFIYDVEIAMILPIVIISKTSNISMc 89
Cdd:CHL00022  16 ISSLIPILAFLISGLLAPISKGP-EKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSA- 93

                         90       100
                 ....*....|....*....|....*.
gi 887513768  90 TMSTMIFIMILLTGLYYEWNQGALKW 115
Cdd:CHL00022  94 FIEALIFVLILIVGLVYAWRKGALEW 119
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
1-115 4.34e-08

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 47.74  E-value: 4.34e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513768   1 MMFLMTSISISFILpmlvmMIATTLSKKSIN-DRE--KSSPFECSFDPKSSAYMpFSLQFFLIAVMFFIYDVEIAMILPI 77
Cdd:PRK08489  15 VLLVLTFVAFFLTT-----RLARFISRKLAQkNTEklKLAIYECGPEPVKQPNR-ISSHFYIMALLFILFDVEIVFMFPW 88

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 887513768  78 VIISKTsnISMCTMSTMI-FIMILLTGLYYEWNQGALKW 115
Cdd:PRK08489  89 AVDFKL--LGLFGLIEMLlFIVLLTIGFIYAWKKGALEW 125
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
32-115 5.40e-07

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 44.73  E-value: 5.40e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513768  32 DREKSSPFECSFDPKSSAYMPFSLQFFLIAVMFFIYDVEIAMILP-IVIISKTSNISMCTMstMIFIMILLTGLYYEWNQ 110
Cdd:PRK07756  39 SAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYPwAVAYDKLGLFALIEM--LIFVVMLLVGLAYAWKK 116


                 ....*
gi 887513768 111 GALKW 115
Cdd:PRK07756 117 KVLQW 121
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 19-115 1.70e-04

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 38.11  E-value: 1.70e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887513768  19 MMIATTLSKKSINdREKSSPFECSFDPKSSAYMP--FSLQFFLIAVMFFIYDVEIAMILP-IVIISKTSNISMCTMstMI 95
Cdd:PRK07928  22 VVVASLVGPKRYN-RAKLEAYECGIEPTPQPAGGgrFPVKYYLTAMLFIVFDIEIVFLYPwAVSFDALGVFGLVEM--AL 98

                         90       100
                 ....*....|....*....|
gi 887513768  96 FIMILLTGLYYEWNQGALKW 115
Cdd:PRK07928  99 FMLTVFVAYAYVWRRGGLEW 118
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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