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Conserved domains on  [gi|881045658|ref|WP_048764507|]
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MULTISPECIES: FAD-dependent oxidoreductase [Acinetobacter]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PRK11749 super family cl46914
dihydropyrimidine dehydrogenase subunit A; Provisional
9-473 0e+00

dihydropyrimidine dehydrogenase subunit A; Provisional


The actual alignment was detected with superfamily member TIGR01318:

Pssm-ID: 481254 [Multi-domain]  Cd Length: 467  Bit Score: 803.25  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658    9 FQFLDVARQDPEKKDIDVRKSEFVEIYKPFTAEVAANQTHRCLGCGNPYCEWKCPVHNYIPNWLKLIAEGRIFQAAELCH 88
Cdd:TIGR01318   1 FQFIDLPRQDPDKIPVEERKTDFREIYGPFDKGQAQYQADRCLDCGNPYCEWKCPVHNAIPQWLQLVQEGRIDEAAELSH 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658   89 QTNTLPEVCGRVCPQDRLCEGACTLNDGFGAVTIGNAEKYINDTAFALGWRPDMSSVKWTDKKVAIIGAGPAGLGCADIL 168
Cdd:TIGR01318  81 QTNTLPEICGRVCPQDRLCEGACTLNDEGGAVTIGNLERYITDTALAMGWRPDLSHVQPTGKRVAVIGAGPAGLACADIL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658  169 VRNGVKPVVFDKRPEIGGLLTFGIPEFKMEKDVMKRRREIFTGMGVEFRLNVEIGTDITIDQLLQDYDAVFMGMGTYTYM 248
Cdd:TIGR01318 161 ARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFRLNCEVGRDISLDDLLEDYDAVFLGVGTYRSM 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658  249 KGGFPGEELEGVYDALDFLIANVNRTQGWEQNPNE-YISVEGKKVIVLGGGDTAMDCNRTSIRQGAEQVTCAYRRDEANM 327
Cdd:TIGR01318 241 RGGLPGEDAPGVLPALPFLIANTRQLMGLPEEPEEpLIDVEGKRVVVLGGGDTAMDCVRTAIRLGATKVTCAYRRDEANM 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658  328 PGSRREVKNAREEGVNFLFNRQPIEIV-GENGQVTGVKVVTTQLGAPDSRGRRSPEPIPGSEEVLAADAVLLAFGFRPSP 406
Cdd:TIGR01318 321 PGSRREVANAREEGVEFLFNVQPVSIEsDEDGQVIGVTVVRTKLGEPDANGRRRPVPVAGSEFVLPADVVIMAFGFSPHL 400
                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 881045658  407 ADWFAPANIGLDGSGRVLAAEQQQYKFQTSNPKIFAGGDMVRGSDLVVTAIWEGRQAAEGILDYLDV 473
Cdd:TIGR01318 401 MPWLAAHGITLDSWGRIITALSSGLTYQTTNPKIFAGGDAVRGADLVVTAVAEGRDAAQGILDWLGV 467
 
Name Accession Description Interval E-value
gltD_gamma_fam TIGR01318
glutamate synthase small subunit family protein, proteobacterial; This model represents one of ...
9-473 0e+00

glutamate synthase small subunit family protein, proteobacterial; This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.


Pssm-ID: 273553 [Multi-domain]  Cd Length: 467  Bit Score: 803.25  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658    9 FQFLDVARQDPEKKDIDVRKSEFVEIYKPFTAEVAANQTHRCLGCGNPYCEWKCPVHNYIPNWLKLIAEGRIFQAAELCH 88
Cdd:TIGR01318   1 FQFIDLPRQDPDKIPVEERKTDFREIYGPFDKGQAQYQADRCLDCGNPYCEWKCPVHNAIPQWLQLVQEGRIDEAAELSH 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658   89 QTNTLPEVCGRVCPQDRLCEGACTLNDGFGAVTIGNAEKYINDTAFALGWRPDMSSVKWTDKKVAIIGAGPAGLGCADIL 168
Cdd:TIGR01318  81 QTNTLPEICGRVCPQDRLCEGACTLNDEGGAVTIGNLERYITDTALAMGWRPDLSHVQPTGKRVAVIGAGPAGLACADIL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658  169 VRNGVKPVVFDKRPEIGGLLTFGIPEFKMEKDVMKRRREIFTGMGVEFRLNVEIGTDITIDQLLQDYDAVFMGMGTYTYM 248
Cdd:TIGR01318 161 ARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFRLNCEVGRDISLDDLLEDYDAVFLGVGTYRSM 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658  249 KGGFPGEELEGVYDALDFLIANVNRTQGWEQNPNE-YISVEGKKVIVLGGGDTAMDCNRTSIRQGAEQVTCAYRRDEANM 327
Cdd:TIGR01318 241 RGGLPGEDAPGVLPALPFLIANTRQLMGLPEEPEEpLIDVEGKRVVVLGGGDTAMDCVRTAIRLGATKVTCAYRRDEANM 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658  328 PGSRREVKNAREEGVNFLFNRQPIEIV-GENGQVTGVKVVTTQLGAPDSRGRRSPEPIPGSEEVLAADAVLLAFGFRPSP 406
Cdd:TIGR01318 321 PGSRREVANAREEGVEFLFNVQPVSIEsDEDGQVIGVTVVRTKLGEPDANGRRRPVPVAGSEFVLPADVVIMAFGFSPHL 400
                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 881045658  407 ADWFAPANIGLDGSGRVLAAEQQQYKFQTSNPKIFAGGDMVRGSDLVVTAIWEGRQAAEGILDYLDV 473
Cdd:TIGR01318 401 MPWLAAHGITLDSWGRIITALSSGLTYQTTNPKIFAGGDAVRGADLVVTAVAEGRDAAQGILDWLGV 467
gltD PRK12810
glutamate synthase subunit beta; Reviewed
7-473 0e+00

glutamate synthase subunit beta; Reviewed


Pssm-ID: 237213 [Multi-domain]  Cd Length: 471  Bit Score: 794.37  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658   7 NDFQFLDVARQDPEKKDIDVRKSEFVEIYKPFTAEVAANQTHRCLGCGNPYCEWKCPVHNYIPNWLKLIAEGRIFQAAEL 86
Cdd:PRK12810   3 KPTGFLEYDRVDPKKRPVAERIKDFKEFYEPFSEEQAKIQAARCMDCGIPFCHWGCPVHNYIPEWNDLVYRGRWEEAAER 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658  87 CHQTNTLPEVCGRVCPQDrlCEGACTLNDGFGAVTIGNAEKYINDTAFALGW-RPDmSSVKWTDKKVAIIGAGPAGLGCA 165
Cdd:PRK12810  83 LHQTNNFPEFTGRVCPAP--CEGACTLNINFGPVTIKNIERYIIDKAFEEGWvKPD-PPVKRTGKKVAVVGSGPAGLAAA 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 166 DILVRNGVKPVVFDKRPEIGGLLTFGIPEFKMEKDVMKRRREIFTGMGVEFRLNVEIGTDITIDQLLQDYDAVFMGMGTY 245
Cdd:PRK12810 160 DQLARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVGKDITAEELLAEYDAVFLGTGAY 239
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 246 TYMKGGFPGEELEGVYDALDFLIANVNRTQGWEQNPneYISVEGKKVIVLGGGDTAMDCNRTSIRQGAEQVTcayRRDEA 325
Cdd:PRK12810 240 KPRDLGIPGRDLDGVHFAMDFLIQNTRRVLGDETEP--FISAKGKHVVVIGGGDTGMDCVGTAIRQGAKSVT---QRDIM 314
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 326 NMPGSRR-------------EVKNAREEGVNFLFNRQPIEIVGENGQVTGVKVVTTQLGAPDsrgrrsPEPIPGSEEVLA 392
Cdd:PRK12810 315 PMPPSRRnknnpwpywpmklEVSNAHEEGVEREFNVQTKEFEGENGKVTGVKVVRTELGEGD------FEPVEGSEFVLP 388
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 393 ADAVLLAFGFRPSPADWFAPANIGLDGSGRVLAAEQQqykFQTSNPKIFAGGDMVRGSDLVVTAIWEGRQAAEGILDYLD 472
Cdd:PRK12810 389 ADLVLLAMGFTGPEAGLLAQFGVELDERGRVAAPDNA---YQTSNPKVFAAGDMRRGQSLVVWAIAEGRQAARAIDAYLM 465

                 .
gi 881045658 473 V 473
Cdd:PRK12810 466 G 466
GltD COG0493
NADPH-dependent glutamate synthase beta chain or related oxidoreductase [Amino acid transport ...
27-470 0e+00

NADPH-dependent glutamate synthase beta chain or related oxidoreductase [Amino acid transport and metabolism, General function prediction only]; NADPH-dependent glutamate synthase beta chain or related oxidoreductase is part of the Pathway/BioSystem: Glutamine biosynthesis


Pssm-ID: 440259 [Multi-domain]  Cd Length: 434  Bit Score: 653.74  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658  27 RKSEFVEIYKPFTAEVAANQTHRCLGCGNPYCEWKCPVHNYIPNWLKLIAEGRIFQAAELCHQTNTLPEVCGRVCPqdRL 106
Cdd:COG0493    1 RIKDFREVYPGLSEEEAIEQAARCLDCGDPPCQTGCPVGNDIPEWIRLIAEGDYEEALELIHETNPFPEVCGRVCP--AP 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 107 CEGACTLNDGFGAVTIGNAEKYINDTAFALGWRPDMSSVKWTDKKVAIIGAGPAGLGCADILVRNGVKPVVFDKRPEIGG 186
Cdd:COG0493   79 CEGACVRGIVDEPVAIGALERFIADKAFEEGWVKPPPPAPRTGKKVAVVGSGPAGLAAAYQLARAGHEVTVFEALDKPGG 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 187 LLTFGIPEFKMEKDVMKRRREIFTGMGVEFRLNVEIGTDITIDQLLQDYDAVFMGMGTYTYMKGGFPGEELEGVYDALDF 266
Cdd:COG0493  159 LLRYGIPEFRLPKDVLDREIELIEALGVEFRTNVEVGKDITLDELLEEFDAVFLATGAGKPRDLGIPGEDLKGVHSAMDF 238
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 267 LIAnVNRTQGweqnpNEYISVEGKKVIVLGGGDTAMDCNRTSIRQGAEQVTCAYRRDEANMPGSRREVKNAREEGVNFLF 346
Cdd:COG0493  239 LTA-VNLGEA-----PDTILAVGKRVVVIGGGNTAMDCARTALRLGAESVTIVYRRTREEMPASKEEVEEALEEGVEFLF 312
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 347 NRQPIEIVG-ENGQVTGVKVVTTQLGAPDSRGRRSPEPIPGSEEVLAADAVLLAFGFRPSPADWFAPANIGLDGSGRVLA 425
Cdd:COG0493  313 LVAPVEIIGdENGRVTGLECVRMELGEPDESGRRRPVPIEGSEFTLPADLVILAIGQTPDPSGLEEELGLELDKRGTIVV 392
                        410       420       430       440
                 ....*....|....*....|....*....|....*....|....*
gi 881045658 426 AEQqqyKFQTSNPKIFAGGDMVRGSDLVVTAIWEGRQAAEGILDY 470
Cdd:COG0493  393 DEE---TYQTSLPGVFAGGDAVRGPSLVVWAIAEGRKAARAIDRY 434
Fer4_20 pfam14691
Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster; Domain II of the enzyme ...
27-138 1.35e-55

Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster; Domain II of the enzyme dihydroprymidine dehydrogenase binds FAD. Dihydroprymidine dehydrogenase catalyzes the first and rate-limiting step of pyrimidine degradation by converting pyrimidines to the corresponding 5,6- dihydro compounds. This domain carries two Fe4-S4 clusters.


Pssm-ID: 434132 [Multi-domain]  Cd Length: 113  Bit Score: 180.43  E-value: 1.35e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658   27 RKSEFVEIYKPFTAEVAANQTHRCLGCGNPYCEWKCPVHNYIPNWLKLIAEGRIFQAAELCHQTNTLPEVCGRVCPQDRL 106
Cdd:pfam14691   1 RIKNFEEVALGYTEEEAIAEASRCLQCKDPPCVKGCPVHIDIPEFIKLIAEGNFEGAARIILETNPLPAICGRVCPQERQ 80
                          90       100       110
                  ....*....|....*....|....*....|...
gi 881045658  107 CEGACTLN-DGFGAVTIGNAEKYINDTAFALGW 138
Cdd:pfam14691  81 CEGACVLGkKGFEPVAIGRLERFAADWARENGI 113
Malic_M smart00919
Malic enzyme, NAD binding domain; Malic enzymes (malate oxidoreductases) catalyse the ...
148-198 2.18e-04

Malic enzyme, NAD binding domain; Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate.


Pssm-ID: 214912  Cd Length: 231  Bit Score: 42.79  E-value: 2.18e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 881045658   148 TDKKVAIIGAGPAGLGCADILVRNGVKP---VVFDKRpeigGLLTFG----IPEFKME 198
Cdd:smart00919  24 EDQRIVVNGAGAAGIGIAKLLVAAGVKRkniWLVDSK----GLLTKGrednLNPYKKP 77
NAD_bind_2_malic_enz cd05311
NAD(P) binding domain of malic enzyme (ME), subgroup 2; Malic enzyme (ME), a member of the ...
149-181 5.22e-03

NAD(P) binding domain of malic enzyme (ME), subgroup 2; Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts.


Pssm-ID: 133453 [Multi-domain]  Cd Length: 226  Bit Score: 38.40  E-value: 5.22e-03
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 881045658 149 DKKVAIIGAGPAGLGCADILVRNGVKP---VVFDKR 181
Cdd:cd05311   25 EVKIVINGAGAAGIAIARLLLAAGAKPeniVVVDSK 60
 
Name Accession Description Interval E-value
gltD_gamma_fam TIGR01318
glutamate synthase small subunit family protein, proteobacterial; This model represents one of ...
9-473 0e+00

glutamate synthase small subunit family protein, proteobacterial; This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.


Pssm-ID: 273553 [Multi-domain]  Cd Length: 467  Bit Score: 803.25  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658    9 FQFLDVARQDPEKKDIDVRKSEFVEIYKPFTAEVAANQTHRCLGCGNPYCEWKCPVHNYIPNWLKLIAEGRIFQAAELCH 88
Cdd:TIGR01318   1 FQFIDLPRQDPDKIPVEERKTDFREIYGPFDKGQAQYQADRCLDCGNPYCEWKCPVHNAIPQWLQLVQEGRIDEAAELSH 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658   89 QTNTLPEVCGRVCPQDRLCEGACTLNDGFGAVTIGNAEKYINDTAFALGWRPDMSSVKWTDKKVAIIGAGPAGLGCADIL 168
Cdd:TIGR01318  81 QTNTLPEICGRVCPQDRLCEGACTLNDEGGAVTIGNLERYITDTALAMGWRPDLSHVQPTGKRVAVIGAGPAGLACADIL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658  169 VRNGVKPVVFDKRPEIGGLLTFGIPEFKMEKDVMKRRREIFTGMGVEFRLNVEIGTDITIDQLLQDYDAVFMGMGTYTYM 248
Cdd:TIGR01318 161 ARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFRLNCEVGRDISLDDLLEDYDAVFLGVGTYRSM 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658  249 KGGFPGEELEGVYDALDFLIANVNRTQGWEQNPNE-YISVEGKKVIVLGGGDTAMDCNRTSIRQGAEQVTCAYRRDEANM 327
Cdd:TIGR01318 241 RGGLPGEDAPGVLPALPFLIANTRQLMGLPEEPEEpLIDVEGKRVVVLGGGDTAMDCVRTAIRLGATKVTCAYRRDEANM 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658  328 PGSRREVKNAREEGVNFLFNRQPIEIV-GENGQVTGVKVVTTQLGAPDSRGRRSPEPIPGSEEVLAADAVLLAFGFRPSP 406
Cdd:TIGR01318 321 PGSRREVANAREEGVEFLFNVQPVSIEsDEDGQVIGVTVVRTKLGEPDANGRRRPVPVAGSEFVLPADVVIMAFGFSPHL 400
                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 881045658  407 ADWFAPANIGLDGSGRVLAAEQQQYKFQTSNPKIFAGGDMVRGSDLVVTAIWEGRQAAEGILDYLDV 473
Cdd:TIGR01318 401 MPWLAAHGITLDSWGRIITALSSGLTYQTTNPKIFAGGDAVRGADLVVTAVAEGRDAAQGILDWLGV 467
gltD PRK12810
glutamate synthase subunit beta; Reviewed
7-473 0e+00

glutamate synthase subunit beta; Reviewed


Pssm-ID: 237213 [Multi-domain]  Cd Length: 471  Bit Score: 794.37  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658   7 NDFQFLDVARQDPEKKDIDVRKSEFVEIYKPFTAEVAANQTHRCLGCGNPYCEWKCPVHNYIPNWLKLIAEGRIFQAAEL 86
Cdd:PRK12810   3 KPTGFLEYDRVDPKKRPVAERIKDFKEFYEPFSEEQAKIQAARCMDCGIPFCHWGCPVHNYIPEWNDLVYRGRWEEAAER 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658  87 CHQTNTLPEVCGRVCPQDrlCEGACTLNDGFGAVTIGNAEKYINDTAFALGW-RPDmSSVKWTDKKVAIIGAGPAGLGCA 165
Cdd:PRK12810  83 LHQTNNFPEFTGRVCPAP--CEGACTLNINFGPVTIKNIERYIIDKAFEEGWvKPD-PPVKRTGKKVAVVGSGPAGLAAA 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 166 DILVRNGVKPVVFDKRPEIGGLLTFGIPEFKMEKDVMKRRREIFTGMGVEFRLNVEIGTDITIDQLLQDYDAVFMGMGTY 245
Cdd:PRK12810 160 DQLARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVGKDITAEELLAEYDAVFLGTGAY 239
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 246 TYMKGGFPGEELEGVYDALDFLIANVNRTQGWEQNPneYISVEGKKVIVLGGGDTAMDCNRTSIRQGAEQVTcayRRDEA 325
Cdd:PRK12810 240 KPRDLGIPGRDLDGVHFAMDFLIQNTRRVLGDETEP--FISAKGKHVVVIGGGDTGMDCVGTAIRQGAKSVT---QRDIM 314
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 326 NMPGSRR-------------EVKNAREEGVNFLFNRQPIEIVGENGQVTGVKVVTTQLGAPDsrgrrsPEPIPGSEEVLA 392
Cdd:PRK12810 315 PMPPSRRnknnpwpywpmklEVSNAHEEGVEREFNVQTKEFEGENGKVTGVKVVRTELGEGD------FEPVEGSEFVLP 388
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 393 ADAVLLAFGFRPSPADWFAPANIGLDGSGRVLAAEQQqykFQTSNPKIFAGGDMVRGSDLVVTAIWEGRQAAEGILDYLD 472
Cdd:PRK12810 389 ADLVLLAMGFTGPEAGLLAQFGVELDERGRVAAPDNA---YQTSNPKVFAAGDMRRGQSLVVWAIAEGRQAARAIDAYLM 465

                 .
gi 881045658 473 V 473
Cdd:PRK12810 466 G 466
PRK12769 PRK12769
putative oxidoreductase Fe-S binding subunit; Reviewed
15-473 0e+00

putative oxidoreductase Fe-S binding subunit; Reviewed


Pssm-ID: 183733 [Multi-domain]  Cd Length: 654  Bit Score: 750.81  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658  15 ARQDPEKKDIDVRKSEFVEIYKPFTAEVAANQTHRCLGCG-NPYCEWKCPVHNYIPNWLKLIAEGRIFQAAELCHQTNTL 93
Cdd:PRK12769 192 PRGEPDKLAIEARKTGFDEIYLPFRADQAQREASRCLKCGeHSICEWTCPLHNHIPQWIELVKAGNIDAAVELSHQTNSL 271
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658  94 PEVCGRVCPQDRLCEGACTLNDGFGAVTIGNAEKYINDTAFALGWRPDMSSVKWTDKKVAIIGAGPAGLGCADILVRNGV 173
Cdd:PRK12769 272 PEITGRVCPQDRLCEGACTLRDEYGAVTIGNIERYISDQALAKGWRPDLSQVTKSDKRVAIIGAGPAGLACADVLARNGV 351
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 174 KPVVFDKRPEIGGLLTFGIPEFKMEKDVMKRRREIFTGMGVEFRLNVEIGTDITIDQLLQDYDAVFMGMGTYTYMKGGFP 253
Cdd:PRK12769 352 AVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGKDISLESLLEDYDAVFVGVGTYRSMKAGLP 431
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 254 GEELEGVYDALDFLIANVNRTQGWEQNPNE-YISVEGKKVIVLGGGDTAMDCNRTSIRQGAEQVTCAYRRDEANMPGSRR 332
Cdd:PRK12769 432 NEDAPGVYDALPFLIANTKQVMGLEELPEEpFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPGSKK 511
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 333 EVKNAREEGVNFLFNRQPIEIV-GENGQVTGVKVVTTQLGAPDSRGRRSPEPIPGSEEVLAADAVLLAFGFRPSPADWFA 411
Cdd:PRK12769 512 EVKNAREEGANFEFNVQPVALElNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMPWLE 591
                        410       420       430       440       450       460
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 881045658 412 PANIGLDGSGRVLAAEQQQYKFQTSNPKIFAGGDMVRGSDLVVTAIWEGRQAAEGILDYLDV 473
Cdd:PRK12769 592 SHGVTVDKWGRIIADVESQYRYQTSNPKIFAGGDAVRGADLVVTAMAEGRHAAQGIIDWLGV 653
GltD COG0493
NADPH-dependent glutamate synthase beta chain or related oxidoreductase [Amino acid transport ...
27-470 0e+00

NADPH-dependent glutamate synthase beta chain or related oxidoreductase [Amino acid transport and metabolism, General function prediction only]; NADPH-dependent glutamate synthase beta chain or related oxidoreductase is part of the Pathway/BioSystem: Glutamine biosynthesis


Pssm-ID: 440259 [Multi-domain]  Cd Length: 434  Bit Score: 653.74  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658  27 RKSEFVEIYKPFTAEVAANQTHRCLGCGNPYCEWKCPVHNYIPNWLKLIAEGRIFQAAELCHQTNTLPEVCGRVCPqdRL 106
Cdd:COG0493    1 RIKDFREVYPGLSEEEAIEQAARCLDCGDPPCQTGCPVGNDIPEWIRLIAEGDYEEALELIHETNPFPEVCGRVCP--AP 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 107 CEGACTLNDGFGAVTIGNAEKYINDTAFALGWRPDMSSVKWTDKKVAIIGAGPAGLGCADILVRNGVKPVVFDKRPEIGG 186
Cdd:COG0493   79 CEGACVRGIVDEPVAIGALERFIADKAFEEGWVKPPPPAPRTGKKVAVVGSGPAGLAAAYQLARAGHEVTVFEALDKPGG 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 187 LLTFGIPEFKMEKDVMKRRREIFTGMGVEFRLNVEIGTDITIDQLLQDYDAVFMGMGTYTYMKGGFPGEELEGVYDALDF 266
Cdd:COG0493  159 LLRYGIPEFRLPKDVLDREIELIEALGVEFRTNVEVGKDITLDELLEEFDAVFLATGAGKPRDLGIPGEDLKGVHSAMDF 238
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 267 LIAnVNRTQGweqnpNEYISVEGKKVIVLGGGDTAMDCNRTSIRQGAEQVTCAYRRDEANMPGSRREVKNAREEGVNFLF 346
Cdd:COG0493  239 LTA-VNLGEA-----PDTILAVGKRVVVIGGGNTAMDCARTALRLGAESVTIVYRRTREEMPASKEEVEEALEEGVEFLF 312
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 347 NRQPIEIVG-ENGQVTGVKVVTTQLGAPDSRGRRSPEPIPGSEEVLAADAVLLAFGFRPSPADWFAPANIGLDGSGRVLA 425
Cdd:COG0493  313 LVAPVEIIGdENGRVTGLECVRMELGEPDESGRRRPVPIEGSEFTLPADLVILAIGQTPDPSGLEEELGLELDKRGTIVV 392
                        410       420       430       440
                 ....*....|....*....|....*....|....*....|....*
gi 881045658 426 AEQqqyKFQTSNPKIFAGGDMVRGSDLVVTAIWEGRQAAEGILDY 470
Cdd:COG0493  393 DEE---TYQTSLPGVFAGGDAVRGPSLVVWAIAEGRKAARAIDRY 434
PRK11749 PRK11749
dihydropyrimidine dehydrogenase subunit A; Provisional
10-471 0e+00

dihydropyrimidine dehydrogenase subunit A; Provisional


Pssm-ID: 236967 [Multi-domain]  Cd Length: 457  Bit Score: 579.06  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658  10 QFLDVARQDPEKKDIDVRKSEFVEIYKPFTAEVAANQTHRCLGCGNPYCEWKCPVHNYIPNWLKLIAEGRIFQAAELCHQ 89
Cdd:PRK11749   2 KFLTTPRIPMPRQDAEERAQNFDEVAPGYTPEEAIEEASRCLQCKDAPCVKACPVSIDIPEFIRLIAEGNLKGAAETILE 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658  90 TNTLPEVCGRVCPQDRLCEGACTLNDGFGAVTIGNAEKYINDTAFALGWRPDMSSVKwTDKKVAIIGAGPAGLGCADILV 169
Cdd:PRK11749  82 TNPLPAVCGRVCPQERLCEGACVRGKKGEPVAIGRLERYITDWAMETGWVLFKRAPK-TGKKVAVIGAGPAGLTAAHRLA 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 170 RNGVKPVVFDKRPEIGGLLTFGIPEFKMEKDVMKRRREIFTGMGVEFRLNVEIGTDITIDQLLQDYDAVFMGMGTYTYMK 249
Cdd:PRK11749 161 RKGYDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKLGVEIRTNTEVGRDITLDELRAGYDAVFIGTGAGLPRF 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 250 GGFPGEELEGVYDALDFLiANVNRTQGWEQNPneyisvEGKKVIVLGGGDTAMDCNRTSIRQGAEQVTCAYRRDEANMPG 329
Cdd:PRK11749 241 LGIPGENLGGVYSAVDFL-TRVNQAVADYDLP------VGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPA 313
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 330 SRREVKNAREEGVNFLFNRQPIEIVGENGQVTGVKVVTTQLGAPDSRGRRSpEPIPGSEEVLAADAVLLAFGFRPSPADW 409
Cdd:PRK11749 314 SEEEVEHAKEEGVEFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRRR-VPIEGSEFTLPADLVIKAIGQTPNPLIL 392
                        410       420       430       440       450       460
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 881045658 410 FAPANIGLDGSGRVLAAEQQqykFQTSNPKIFAGGDMVRGSDLVVTAIWEGRQAAEGILDYL 471
Cdd:PRK11749 393 STTPGLELNRWGTIIADDET---GRTSLPGVFAGGDIVTGAATVVWAVGDGKDAAEAIHEYL 451
PRK12809 PRK12809
putative oxidoreductase Fe-S binding subunit; Reviewed
12-472 0e+00

putative oxidoreductase Fe-S binding subunit; Reviewed


Pssm-ID: 183762 [Multi-domain]  Cd Length: 639  Bit Score: 573.51  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658  12 LDV-ARQDPEKKDIDVRKSEFVEIYKPFTAEVAANQTHRCLGCGN-PYCEWKCPVHNYIPNWLKLIAEGRIFQAAELCHQ 89
Cdd:PRK12809 171 LPVnSRKGADKISASERKTHFGEIYCGLDPQQATYESDRCVYCAEkANCNWHCPLHNAIPDYIRLVQEGKIIEAAELCHQ 250
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658  90 TNTLPEVCGRVCPQDRLCEGACTLNDGFGAVTIGNAEKYINDTAFALGWRPDMSSVKWTDKKVAIIGAGPAGLGCADILV 169
Cdd:PRK12809 251 TSSLPEICGRVCPQDRLCEGACTLKDHSGAVSIGNLERYITDTALAMGWRPDVSKVVPRSEKVAVIGAGPAGLGCADILA 330
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 170 RNGVKPVVFDKRPEIGGLLTFGIPEFKMEKDVMKRRREIFTGMGVEFRLNVEIGTDITIDQLLQDYDAVFMGMGTYTYMK 249
Cdd:PRK12809 331 RAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRDITFSDLTSEYDAVFIGVGTYGMMR 410
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 250 GGFPGEELEGVYDALDFLIANVNRTQGWEQNpNEY--ISVEGKKVIVLGGGDTAMDCNRTSIRQGAEQVTCAYRRDEANM 327
Cdd:PRK12809 411 ADLPHEDAPGVIQALPFLTAHTRQLMGLPES-EEYplTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVSM 489
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 328 PGSRREVKNAREEGVNFLFNRQPIEIV-GENGQVTGVKVVTTQLGAPDSRGRRSPEPIPGSEEVLAADAVLLAFGFRPSP 406
Cdd:PRK12809 490 PGSRKEVVNAREEGVEFQFNVQPQYIAcDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHA 569
                        410       420       430       440       450       460
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 881045658 407 ADWFAPANIGLDGSGRVLAAEQQQYKFQTSNPKIFAGGDMVRGSDLVVTAIWEGRQAAEGILDYLD 472
Cdd:PRK12809 570 MPWLQGSGIKLDKWGLIQTGDVGYLPTQTHLKKVFAGGDAVHGADLVVTAMAAGRQAARDMLTLFD 635
PRK12831 PRK12831
putative oxidoreductase; Provisional
14-471 3.02e-131

putative oxidoreductase; Provisional


Pssm-ID: 183780 [Multi-domain]  Cd Length: 464  Bit Score: 387.84  E-value: 3.02e-131
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658  14 VARQDPEkkdidVRKSEFVEIYKPFTAEVAANQTHRCLGCGNPYCEWKCPVHNYIPNWLKLIAEGRIFQAAELCHQTNTL 93
Cdd:PRK12831  11 VREQDPE-----VRATNFEEVCLGYNEEEAVKEASRCLQCKKPKCVKGCPVSINIPGFISKLKEGDFEEAAKIIAKYNAL 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658  94 PEVCGRVCPQDRLCEGACTLNDGFGAVTIGNAEKYINDTAFALGWRPDMSSVKwTDKKVAIIGAGPAGLGCADILVRNGV 173
Cdd:PRK12831  86 PAVCGRVCPQESQCEGKCVLGIKGEPVAIGKLERFVADWARENGIDLSETEEK-KGKKVAVIGSGPAGLTCAGDLAKMGY 164
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 174 KPVVFDKRPEIGGLLTFGIPEFKMEKD-VMKRRREIFTGMGVEFRLNVEIGTDITIDQLLQD--YDAVFMGMGTYTYMKG 250
Cdd:PRK12831 165 DVTIFEALHEPGGVLVYGIPEFRLPKEtVVKKEIENIKKLGVKIETNVVVGKTVTIDELLEEegFDAVFIGSGAGLPKFM 244
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 251 GFPGEELEGVYDALDFLiANVNRTQGWEQNPNEYISVeGKKVIVLGGGDTAMDCNRTSIRQGAEqVTCAYRRDEANMPGS 330
Cdd:PRK12831 245 GIPGENLNGVFSANEFL-TRVNLMKAYKPEYDTPIKV-GKKVAVVGGGNVAMDAARTALRLGAE-VHIVYRRSEEELPAR 321
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 331 RREVKNAREEGVNFLFNRQPIEIVG-ENGQVTGVKVVTTQLGAPDSRGRRSPEPIPGSEEVLAADAVLLAFGFRPSPADW 409
Cdd:PRK12831 322 VEEVHHAKEEGVIFDLLTNPVEILGdENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPLIS 401
                        410       420       430       440       450       460
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 881045658 410 FAPANIGLDGSGRVLAAEQQqykFQTSNPKIFAGGDMVRGSDLVVTAIWEGRQAAEGILDYL 471
Cdd:PRK12831 402 STTKGLKINKRGCIVADEET---GLTSKEGVFAGGDAVTGAATVILAMGAGKKAAKAIDEYL 460
PRK12778 PRK12778
bifunctional dihydroorotate dehydrogenase B NAD binding subunit/NADPH-dependent glutamate ...
17-471 1.65e-117

bifunctional dihydroorotate dehydrogenase B NAD binding subunit/NADPH-dependent glutamate synthase;


Pssm-ID: 237200 [Multi-domain]  Cd Length: 752  Bit Score: 361.75  E-value: 1.65e-117
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658  17 QDPEKKdidvRKSEFVEIYKPFTAEVAANQTHRCLGCGNPYCEWKCPVHNYIPNWLKLIAEGRIFQAAELCHQTNTLPEV 96
Cdd:PRK12778 302 LDPEYR----AHNRFEEVNLGLTKEQAMTEAKRCLDCKNPGCVEGCPVGIDIPRFIKNIERGNFLEAAKILKETSALPAV 377
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658  97 CGRVCPQDRLCEGACT-LNDGFGAVTIGNAEKYINDTAFALGwRPDMSSVK-WTDKKVAIIGAGPAGLGCADILVRNGVK 174
Cdd:PRK12778 378 CGRVCPQEKQCESKCIhGKMGEEAVAIGYLERFVADYERESG-NISVPEVAeKNGKKVAVIGSGPAGLSFAGDLAKRGYD 456
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 175 PVVFDKRPEIGGLLTFGIPEFKMEKDVMKRRREIFTGMGVEFRLNVEIGTDITIDQLL-QDYDAVFM--GMGTYTYMkgG 251
Cdd:PRK12778 457 VTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKLGVKFETDVIVGKTITIEELEeEGFKGIFIasGAGLPNFM--N 534
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 252 FPGEELEGVYDALDFLiANVNRTQGWEQNPNEYISVeGKKVIVLGGGDTAMDCNRTSIRQGAEQVTCAYRRDEANMPGSR 331
Cdd:PRK12778 535 IPGENSNGVMSSNEYL-TRVNLMDAASPDSDTPIKF-GKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPARL 612
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 332 REVKNAREEGVNFLFNRQPIEIVG-ENGQVTGVKVVTTQLGAPDSRGRRSPEPIPGSEEVLAADAVLLAFGFRPSPADWF 410
Cdd:PRK12778 613 EEVKHAKEEGIEFLTLHNPIEYLAdEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPLVPS 692
                        410       420       430       440       450       460
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 881045658 411 APANIGLDGSGRVLAAEQQqykfQTSNPKIFAGGDMVRGSDLVVTAIWEGRQAAEGILDYL 471
Cdd:PRK12778 693 SIPGLELNRKGTIVVDEEM----QSSIPGIYAGGDIVRGGATVILAMGDGKRAAAAIDEYL 749
gltA TIGR01316
glutamate synthase (NADPH), homotetrameric; This protein is homologous to the small subunit of ...
19-471 1.59e-112

glutamate synthase (NADPH), homotetrameric; This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH. [Amino acid biosynthesis, Glutamate family]


Pssm-ID: 130383 [Multi-domain]  Cd Length: 449  Bit Score: 339.15  E-value: 1.59e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658   19 PEKKDIDVRKSEFveiykPFTAEVAANQTHRCLGCGNPY--CEWKCPVHNYIPNWLKLIAEGRIFQAAELCHQTNTLPEV 96
Cdd:TIGR01316   2 PEERSKLFQEAAL-----GYTEQLALVEAQRCLNCKDATkpCIKGCPVHVPIPEFIAKIQEGDFKGAVDIIKTTSLLPAI 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658   97 CGRVCPQDRLCEGACTLNDGFG----AVTIGNAEKYINDTAFALGWRPDMSSVKWTDKKVAIIGAGPAGLGCADILVRNG 172
Cdd:TIGR01316  77 CGRVCPQERQCEGQCTVGKMFKdvgkPVSIGALERFVADWERQHGIETEPEKAPSTHKKVAVIGAGPAGLACASELAKAG 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658  173 VKPVVFDKRPEIGGLLTFGIPEFKMEKDVMKRRREIFTGMGVEFRLNVEIGTDITIDQLLQDYDAVFMGMGTYTYMKGGF 252
Cdd:TIGR01316 157 HSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLGVTFRMNFLVGKTATLEELFSQYDAVFIGTGAGLPKLMNI 236
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658  253 PGEELEGVYDALDFLIaNVNRTQGWEqNPNEYISVE-GKKVIVLGGGDTAMDCNRTSIRQGAEqVTCAYRRDEANMPGSR 331
Cdd:TIGR01316 237 PGEELCGVYSANDFLT-RANLMKAYE-FPHADTPVYaGKSVVVIGGGNTAVDSARTALRLGAE-VHCLYRRTREDMTARV 313
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658  332 REVKNAREEGVNFLFNRQPIEIVG-ENGQVTGVKVVTTQLGAPDSRGRRSPEPIPGSEEVLAADAVLLAFGFRPSPAdWF 410
Cdd:TIGR01316 314 EEIAHAEEEGVKFHFLCQPVEIIGdEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPI-MA 392
                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 881045658  411 APANIGLDGSGRVLAAEQQqykfQTSNPKIFAGGDMVRGSDLVVTAIWEGRQAAEGILDYL 471
Cdd:TIGR01316 393 ETTRLKTSERGTIVVDEDQ----RTSIPGVFAGGDIILGAATVIRAMGQGKRAAKSINEYL 449
GOGAT_sm_gam TIGR01317
glutamate synthases, NADH/NADPH, small subunit; This model represents one of three built for ...
11-471 1.02e-111

glutamate synthases, NADH/NADPH, small subunit; This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.


Pssm-ID: 162300 [Multi-domain]  Cd Length: 485  Bit Score: 338.34  E-value: 1.02e-111
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658   11 FLDVARQDPEKKDIDVRKSEFVEIYKPFTAEVAANQTHRCLGCGNPYC--EWKCPVHNYIPNWLKLIAEGRIFQAAELCH 88
Cdd:TIGR01317   5 FLEYKRRKPTERDPRTRLKDWKEFTNPFDKESAKYQAARCMDCGTPFChnDSGCPLNNLIPEFNDLVFRGRWKEALDRLH 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658   89 QTNTLPEVCGRVCPQDrlCEGACTLNDGFGAVTIGNAEKYINDTAFALGW-RPDMSSVKwTDKKVAIIGAGPAGLGCADI 167
Cdd:TIGR01317  85 ATNNFPEFTGRVCPAP--CEGACTLGISEDPVGIKSIERIIIDKGFQEGWvQPRPPSKR-TGKKVAVVGSGPAGLAAADQ 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658  168 LVRNGVKPVVFDKRPEIGGLLTFGIPEFKMEKDVMKRRREIFTGMGVEFRLNVEIGTDITIDQLLQDYDAVFMGMGTYTY 247
Cdd:TIGR01317 162 LNRAGHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIGVDISADELKEQFDAVVLAGGATKP 241
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658  248 MKGGFPGEELEGVYDALDFLIANVNRTQGWEQNPNEYISVEGKKVIVLGGGDTAMDCNRTSIRQGAEQVT-------CAY 320
Cdd:TIGR01317 242 RDLPIPGRELKGIHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHqfeimpkPPE 321
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658  321 RRDEANM----PGSRReVKNAREEGVNfLFNRQP-------IEIVG-ENGQVTGVKVVTTQLgAPDSRGRRSPEPIPGSE 388
Cdd:TIGR01317 322 ARAKDNPwpewPRVYR-VDYAHEEAAA-HYGRDPreysiltKEFIGdDEGKVTALRTVRVEW-KKSQDGKWQFVEIPGSE 398
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658  389 EVLAADAVLLAFGFRPSPADWFAPANIGLDGSGRVLAAEQQqykFQTSNPKIFAGGDMVRGSDLVVTAIWEGRQAAEGIL 468
Cdd:TIGR01317 399 EVFEADLVLLAMGFVGPEQILLDDFGVKKTRRGNISAGYDD---YSTSIPGVFAAGDCRRGQSLIVWAINEGRKAAAAVD 475

                  ...
gi 881045658  469 DYL 471
Cdd:TIGR01317 476 RYL 478
PRK12771 PRK12771
putative glutamate synthase (NADPH) small subunit; Provisional
56-471 3.95e-101

putative glutamate synthase (NADPH) small subunit; Provisional


Pssm-ID: 237198 [Multi-domain]  Cd Length: 564  Bit Score: 313.74  E-value: 3.95e-101
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658  56 PYCEWKCPVHNYIPNWLKLIAEGRIFQAAELCHQTNTLPEVCGRVCPQDrlCEGACTLNDGFGAVTIGNAEKYINDTAFA 135
Cdd:PRK12771  47 PPCNAACPAGEDIRGWLALVRGGDYEYAWRRLTKDNPFPAVMGRVCYHP--CESGCNRGQVDDAVGINAVERFLGDYAIA 124
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 136 LGWRPDMSSVKwTDKKVAIIGAGPAGLGCADILVRNGVKPVVFDKRPEIGGLLTFGIPEFKMEKDVMKRrrEI--FTGMG 213
Cdd:PRK12771 125 NGWKFPAPAPD-TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDA--EIqrILDLG 201
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 214 VEFRLNVEIGTDITIDQLLQDYDAVFMGMGTYTYMKGGFPGEELEGVYDALDFLiANVNRtqgweqnpNEYISVeGKKVI 293
Cdd:PRK12771 202 VEVRLGVRVGEDITLEQLEGEFDAVFVAIGAQLGKRLPIPGEDAAGVLDAVDFL-RAVGE--------GEPPFL-GKRVV 271
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 294 VLGGGDTAMDCNRTSIRQGAEQVTCAYRRDEANMPGSRREVKNAREEGVNFLFNRQPIEIVGENGQVTGVKVVTTQLGAP 373
Cdd:PRK12771 272 VIGGGNTAMDAARTARRLGAEEVTIVYRRTREDMPAHDEEIEEALREGVEINWLRTPVEIEGDENGATGLRVITVEKMEL 351
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 374 DSRGRrsPEPIPGSEEVLAADAVLLAFG----FRPspadwFAPANIGLDGSGRVLAAEQQQykfQTSNPKIFAGGDMVRG 449
Cdd:PRK12771 352 DEDGR--PSPVTGEEETLEADLVVLAIGqdidSAG-----LESVPGVEVGRGVVQVDPNFM---MTGRPGVFAGGDMVPG 421
                        410       420
                 ....*....|....*....|..
gi 881045658 450 SDLVVTAIWEGRQAAEGILDYL 471
Cdd:PRK12771 422 PRTVTTAIGHGKKAARNIDAFL 443
PRK12775 PRK12775
putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin ...
19-471 9.80e-98

putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional


Pssm-ID: 183738 [Multi-domain]  Cd Length: 1006  Bit Score: 315.73  E-value: 9.80e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658   19 PEKKDIDvRKSEFVEIYKPFTAEVAANQTHRCLGCGNPYCEWKCPVHNYIPNWLKLIAEgRIFQAA-ELCHQTNTLPEVC 97
Cdd:PRK12775  303 PERDAVE-RARNFKEVNLGYSLEDALQEAERCIQCAKPTCIAGCPVQIDIPVFIRHVVV-RDFDGAlEVIYEASIFPSIC 380
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658   98 GRVCPQDRLCEGACTLNDGFGAVTIGNAEKYINDTAFAlgwrPDMSSVKWTDK--KVAIIGAGPAGLGCADILVRNGVKP 175
Cdd:PRK12775  381 GRVCPQETQCEAQCIIAKKHESVGIGRLERFVGDNARA----KPVKPPRFSKKlgKVAICGSGPAGLAAAADLVKYGVDV 456
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658  176 VVFDKRPEIGGLLTFGIPEFKMEKDVMKRRREIFTGMGVEFRLNVEIGTDITIDQLLQD--YDAVFMGMGTYTYMKGGFP 253
Cdd:PRK12775  457 TVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIGVKIETNKVIGKTFTVPQLMNDkgFDAVFLGVGAGAPTFLGIP 536
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658  254 GEELEGVYDALDFLiANVNRTQG----WEQNPneyISVeGKKVIVLGGGDTAMDCNRTSIRQGAEQVTCAYRRDEANMPG 329
Cdd:PRK12775  537 GEFAGQVYSANEFL-TRVNLMGGdkfpFLDTP---ISL-GKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSEAEAPA 611
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658  330 SRREVKNAREEGVNFLFNRQPIEI-VGENGQVTGVKVVTTQLGAPDSRGRRSPEPIpGSEEVLAADAVLLAFGFRPSPAD 408
Cdd:PRK12775  612 RIEEIRHAKEEGIDFFFLHSPVEIyVDAEGSVRGMKVEEMELGEPDEKGRRKPMPT-GEFKDLECDTVIYALGTKANPII 690
                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 881045658  409 WFAPANIGLDGSGRVLAAEQQQYKFQTSN-PKIFAGGDMVRGSDLVVTAIWEGRQAAEGILDYL 471
Cdd:PRK12775  691 TQSTPGLALNKWGNIAADDGKLESTQSTNlPGVFAGGDIVTGGATVILAMGAGRRAARSIATYL 754
PRK12814 PRK12814
putative NADPH-dependent glutamate synthase small subunit; Provisional
50-471 1.03e-89

putative NADPH-dependent glutamate synthase small subunit; Provisional


Pssm-ID: 139246 [Multi-domain]  Cd Length: 652  Bit Score: 286.62  E-value: 1.03e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658  50 CLGCGNPyCEWKCPVHNYIPNWLKLIAEGRIFQAAELCHQTNTLPEVCGRVCPQDrlCEGACTLNDGFGAVTIGNAEKYI 129
Cdd:PRK12814  97 CGDCLGP-CELACPAGCNIPGFIAAIARGDDREAIRIIKETIPLPGILGRICPAP--CEEACRRHGVDEPVSICALKRYA 173
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 130 --NDTAFALGWRPDMSsvKWTDKKVAIIGAGPAGLGCADILVRNGVKPVVFDKRPEIGGLLTFGIPEFKMEKDVMKRRRE 207
Cdd:PRK12814 174 adRDMESAERYIPERA--PKSGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIA 251
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 208 IFTGMGVEFRLNVEIGTDITIDQLLQDYDAVFMGMGTYTYMKGGFPGEELEGVYDALDFLiANVNrtQGWEQNPneyisv 287
Cdd:PRK12814 252 PLRAMGAEFRFNTVFGRDITLEELQKEFDAVLLAVGAQKASKMGIPGEELPGVISGIDFL-RNVA--LGTALHP------ 322
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 288 eGKKVIVLGGGDTAMDCNRTSIRQGAEQVTCAYRRDEANMPGSRREVKNAREEGVNFLFNRQPIEIVGENGQVTgVKVVT 367
Cdd:PRK12814 323 -GKKVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMPANRAEIEEALAEGVSLRELAAPVSIERSEGGLE-LTAIK 400
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 368 TQLGAPDSRGRRSPEPIPGSEEVLAADAVLLAFGFRPSPADWFAPAnIGLDGSGRVLAAEQQQykfQTSNPKIFAGGDMV 447
Cdd:PRK12814 401 MQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPPIAEAAG-IGTSRNGTVKVDPETL---QTSVAGVFAGGDCV 476
                        410       420
                 ....*....|....*....|....
gi 881045658 448 RGSDLVVTAIWEGRQAAEGILDYL 471
Cdd:PRK12814 477 TGADIAINAVEQGKRAAHAIDLFL 500
PRK12770 PRK12770
putative glutamate synthase subunit beta; Provisional
148-472 1.52e-83

putative glutamate synthase subunit beta; Provisional


Pssm-ID: 237197 [Multi-domain]  Cd Length: 352  Bit Score: 261.46  E-value: 1.52e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 148 TDKKVAIIGAGPAGLGCADILVRNGVKPVVFDKRPEIGGLLTFGIPEFKMEKDVMKRRREIFTGMGVEFRLNVEIGTD-- 225
Cdd:PRK12770  17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELEEAGVVFHTRTKVCCGep 96
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 226 -------------ITIDQLLQDYDAVFMGMGTYTYMKGGFPGEELEGVYDALDFLIanvnRTQGWEQN--PNEYI-SVEG 289
Cdd:PRK12770  97 lheeegdefveriVSLEELVKKYDAVLIATGTWKSRKLGIPGEDLPGVYSALEYLF----RIRAAKLGylPWEKVpPVEG 172
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 290 KKVIVLGGGDTAMDCNRTSIRQGAEQVTCAYRRDEANMPGSRREVKNAREEGVNFLFNRQPIEIVGENGqVTGVKVVTTQ 369
Cdd:PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEAPAGKYEIERLIARGVEFLELVTPVRIIGEGR-VEGVELAKMR 251
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 370 LGAPDSRGRRSPEPIPGSEEVLAADAVLLAFGFRPSPAdwFAPANIG--LDGSGRVLAAEqqqyKFQTSNPKIFAGGDMV 447
Cdd:PRK12770 252 LGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPP--FAKECLGieLNRKGEIVVDE----KHMTSREGVFAAGDVV 325
                        330       340
                 ....*....|....*....|....*
gi 881045658 448 RGSDLVVTAIWEGRQAAEGILDYLD 472
Cdd:PRK12770 326 TGPSKIGKAIKSGLRAAQSIHEWLD 350
PRK13984 PRK13984
putative oxidoreductase; Provisional
8-471 4.95e-81

putative oxidoreductase; Provisional


Pssm-ID: 172486 [Multi-domain]  Cd Length: 604  Bit Score: 262.78  E-value: 4.95e-81
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658   8 DFQFLDVARQDPEKKDIDVRKSEFVEIYKPFTAEVAANQTHRCLGCGnpYCEWKCPVHNYIPNWLKLIAEGRIFQAAELC 87
Cdd:PRK13984 145 NSELLDLERVEMEEIPPEERVKSFIEIVKGYSKEQAMQEAARCVECG--ICTDTCPAHMDIPQYIKAIYKDDLEEGLRWL 222
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658  88 HQTNTLPEVCGRVCPQDrlCEGACTLNDGFGAVTIGNAEKYINDTAFALGWRP--DMSSVKwTDKKVAIIGAGPAGLGCA 165
Cdd:PRK13984 223 YKTNPLSMVCGRVCTHK--CETVCSIGHRGEPIAIRWLKRYIVDNVPVEKYSEilDDEPEK-KNKKVAIVGSGPAGLSAA 299
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 166 DILVRNGVKPVVFDKRPEIGGLLTFGIPEFKMEKDVMKRRREIFTGMGVEFRLNVEIGTDITIDQLLQDYDAVFMGMGTY 245
Cdd:PRK13984 300 YFLATMGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNTRVGKDIPLEELREKHDAVFLSTGFT 379
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 246 TYMKGGFPGEELEGVYDALDFL--IANVNRTQGweqnPNEYISvegKKVIVLGGGDTAMDCNRTSIR-QGAE------QV 316
Cdd:PRK13984 380 LGRSTRIPGTDHPDVIQALPLLreIRDYLRGEG----PKPKIP---RSLVVIGGGNVAMDIARSMARlQKMEygevnvKV 452
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 317 TCaYRRDEANMPGSRREVKNAREEGVNFLFNRQPIEIVGENGQVTGVKVVTTqLGAPDSRGRRSPEPIPGSEEVLAADAV 396
Cdd:PRK13984 453 TS-LERTFEEMPADMEEIEEGLEEGVVIYPGWGPMEVVIENDKVKGVKFKKC-VEVFDEEGRFNPKFDESDQIIVEADMV 530
                        410       420       430       440       450       460       470
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 881045658 397 LLAFGFRPS----PADWFAPANIgldGSGRVLAAEQQqykfQTSNPKIFAGGDMVRGSDlVVTAIWEGRQAAEGILDYL 471
Cdd:PRK13984 531 VEAIGQAPDysylPEELKSKLEF---VRGRILTNEYG----QTSIPWLFAGGDIVHGPD-IIHGVADGYWAAEGIDMYL 601
PRK12779 PRK12779
putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; ...
62-472 2.20e-63

putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional


Pssm-ID: 183740 [Multi-domain]  Cd Length: 944  Bit Score: 221.24  E-value: 2.20e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658  62 CPVHNYIPNWLKLIAEGRIFQAAELCHQTNTLPEVCGRVCPQDRLCEGACTLNDgfGAVTIGNAEKYI--------NDTA 133
Cdd:PRK12779 214 CPVKIHIPEMLDLLGNGKHREALELIESCNPLPNVTGRVCPQELQCQGVCTHTK--RPIEIGQLEWYLpqheklvnPNAN 291
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 134 FALGWRPDmSSVKWTDKKVAIIGAGPAGLGCADILVRNGVKPVVFDKRPEIGGLLTFGIPEFKMEKDVMKRRREIFTGMG 213
Cdd:PRK12779 292 ERFAGRIS-PWAAAVKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLG 370
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 214 VEFRLNVEIGTDITIDQLLQD-YDAVFMGMGT--YTYMKggFPGEELEGVYDALDFLiANVNRTQGweqNPNEYIS---- 286
Cdd:PRK12779 371 GRFVKNFVVGKTATLEDLKAAgFWKIFVGTGAglPTFMN--VPGEHLLGVMSANEFL-TRVNLMRG---LDDDYETplpe 444
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 287 VEGKKVIVLGGGDTAMDCNRTSIRQGAeQVTCAYRRDEANMPGSRREVKNAREEGVNFLFNRQPIEIVG--ENGQVTGVK 364
Cdd:PRK12779 445 VKGKEVFVIGGGNTAMDAARTAKRLGG-NVTIVYRRTKSEMPARVEELHHALEEGINLAVLRAPREFIGddHTHFVTHAL 523
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 365 VVTTQLGAPDSRGRRSPEPIpGSEEVLAADAVLLAFGFRPSPADWFAPANIGLDGSGRVLAAEQQQykfQTSNPKIFAGG 444
Cdd:PRK12779 524 LDVNELGEPDKSGRRSPKPT-GEIERVPVDLVIMALGNTANPIMKDAEPGLKTNKWGTIEVEKGSQ---RTSIKGVYSGG 599
                        410       420
                 ....*....|....*....|....*...
gi 881045658 445 DMVRGSDLVVTAIWEGRQAAEGILDYLD 472
Cdd:PRK12779 600 DAARGGSTAIRAAGDGQAAAKEIVGEIP 627
Fer4_20 pfam14691
Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster; Domain II of the enzyme ...
27-138 1.35e-55

Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster; Domain II of the enzyme dihydroprymidine dehydrogenase binds FAD. Dihydroprymidine dehydrogenase catalyzes the first and rate-limiting step of pyrimidine degradation by converting pyrimidines to the corresponding 5,6- dihydro compounds. This domain carries two Fe4-S4 clusters.


Pssm-ID: 434132 [Multi-domain]  Cd Length: 113  Bit Score: 180.43  E-value: 1.35e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658   27 RKSEFVEIYKPFTAEVAANQTHRCLGCGNPYCEWKCPVHNYIPNWLKLIAEGRIFQAAELCHQTNTLPEVCGRVCPQDRL 106
Cdd:pfam14691   1 RIKNFEEVALGYTEEEAIAEASRCLQCKDPPCVKGCPVHIDIPEFIKLIAEGNFEGAARIILETNPLPAICGRVCPQERQ 80
                          90       100       110
                  ....*....|....*....|....*....|...
gi 881045658  107 CEGACTLN-DGFGAVTIGNAEKYINDTAFALGW 138
Cdd:pfam14691  81 CEGACVLGkKGFEPVAIGRLERFAADWARENGI 113
TrxB COG0492
Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones];
151-472 2.42e-35

Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440258 [Multi-domain]  Cd Length: 305  Bit Score: 133.32  E-value: 2.42e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 151 KVAIIGAGPAGLGCADILVRNGVKPVVFDkRPEIGGLLT--------FGIPEFKMEKDVMKRRREIFTGMGVEFRL---- 218
Cdd:COG0492    2 DVVIIGAGPAGLTAAIYAARAGLKTLVIE-GGEPGGQLAttkeienyPGFPEGISGPELAERLREQAERFGAEILLeevt 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 219 NVEIGTD---ITIDQLLQdY--DAVFMGMGTYtYMKGGFPGEEL---EGVY-----DALDFlianvnrtqgweqnpneyi 285
Cdd:COG0492   81 SVDKDDGpfrVTTDDGTE-YeaKAVIIATGAG-PRKLGLPGEEEfegRGVSycatcDGFFF------------------- 139
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 286 svEGKKVIVLGGGDTAMD--CNRTSIrqgAEQVTCAYRRDEANmpGSRREVKNARE-EGVNFLFNRQPIEIVGENGqVTG 362
Cdd:COG0492  140 --RGKDVVVVGGGDSALEeaLYLTKF---ASKVTLIHRRDELR--ASKILVERLRAnPKIEVLWNTEVTEIEGDGR-VEG 211
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 363 VKVVTTQlgapdsrgrrspepiPGSEEVLAADAVLLAFGFRPSpADWFAPANIGLDGSGRVLAAEqqqyKFQTSNPKIFA 442
Cdd:COG0492  212 VTLKNVK---------------TGEEKELEVDGVFVAIGLKPN-TELLKGLGLELDEDGYIVVDE----DMETSVPGVFA 271
                        330       340       350
                 ....*....|....*....|....*....|.
gi 881045658 443 GGDMVRGS-DLVVTAIWEGRQAAEGILDYLD 472
Cdd:COG0492  272 AGDVRDYKyRQAATAAGEGAIAALSAARYLE 302
Pyr_redox_2 pfam07992
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II ...
150-460 6.46e-28

Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.


Pssm-ID: 400379 [Multi-domain]  Cd Length: 301  Bit Score: 112.80  E-value: 6.46e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658  150 KKVAIIGAGPAGLGCADILVRNGVKPVVFDKRPEI---GGLLTFGI-------PEFKMEKDVMKRRREIFTGM--GVEFR 217
Cdd:pfam07992   1 YDVVVIGGGPAGLAAALTLAQLGGKVTLIEDEGTCpygGCVLSKALlgaaeapEIASLWADLYKRKEEVVKKLnnGIEVL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658  218 LNVEiGTDITID-QLLQDYDAVFMGMGTYTYMK-----GGFPGE-ELEGVYDALDFLIANVNRTQGWEQNPNEyisvegK 290
Cdd:pfam07992  81 LGTE-VVSIDPGaKKVVLEELVDGDGETITYDRlviatGARPRLpPIPGVELNVGFLVRTLDSAEALRLKLLP------K 153
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658  291 KVIVLGGGDTAMDCNRTSIRQGAEqVTCAYRRDEANMP----GSRREVKNAREEGVNFLFNRQPIEIVGENGqvtGVKVV 366
Cdd:pfam07992 154 RVVVVGGGYIGVELAAALAKLGKE-VTLIEALDRLLRAfdeeISAALEKALEKNGVEVRLGTSVKEIIGDGD---GVEVI 229
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658  367 TtqlgapdsrgrrspepipGSEEVLAADAVLLAFGFRPSPaDWFAPANIGLDGSGRVLAAEQQqykfQTSNPKIFAGGDM 446
Cdd:pfam07992 230 L------------------KDGTEIDADLVVVAIGRRPNT-ELLEAAGLELDERGGIVVDEYL----RTSVPGIYAAGDC 286
                         330
                  ....*....|....*
gi 881045658  447 -VRGSDLVVTAIWEG 460
Cdd:pfam07992 287 rVGGPELAQNAVAQG 301
TRX_reduct TIGR01292
thioredoxin-disulfide reductase; This model describes thioredoxin-disulfide reductase, a ...
151-471 1.68e-20

thioredoxin-disulfide reductase; This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070). [Energy metabolism, Electron transport]


Pssm-ID: 273540 [Multi-domain]  Cd Length: 299  Bit Score: 91.53  E-value: 1.68e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658  151 KVAIIGAGPAGLGCADILVRNGVKPVVFDkRPEIGGLLTF--------GIPEFKMEKDVMKRRREIFTGMGVEFRLNVEI 222
Cdd:TIGR01292   1 DVIIIGAGPAGLTAAIYAARANLKPLLIE-GMEPGGQLTTttevenypGFPEGISGPELMEKMKEQAVKFGAEIIYEEVI 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658  223 GTD--------ITIDQLLQDYDAVFMGMGTyTYMKGGFPGEElegvydalDFLIANVNrtqgweqnpneYISV------E 288
Cdd:TIGR01292  80 KVDksdrpfkvYTGDGKEYTAKAVIIATGA-SARKLGIPGED--------EFWGRGVS-----------YCATcdgpffK 139
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658  289 GKKVIVLGGGDTAMD--CNRTSIrqgAEQVTCAYRRDeanmpGSRRE---VKNARE-EGVNFLFNRQPIEIVGENGqVTG 362
Cdd:TIGR01292 140 NKEVAVVGGGDSAIEeaLYLTRI---AKKVTLVHRRD-----KFRAEkilLDRLKKnPKIEFLWNSTVEEIVGDNK-VEG 210
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658  363 VKVVTTQlgapdsrgrrspepiPGSEEVLAADAVLLAFGFRPSPAdwFAPANIGLDGSGRVLAAEQQqykfQTSNPKIFA 442
Cdd:TIGR01292 211 VKIKNTV---------------TGEEEELEVDGVFIAIGHEPNTE--LLKGLLELDENGYIVTDEGM----RTSVPGVFA 269
                         330       340       350
                  ....*....|....*....|....*....|.
gi 881045658  443 GGDmVRGSDL--VVTAIWEGRQAAEGILDYL 471
Cdd:TIGR01292 270 AGD-VRDKGYrqAVTAAGDGCIAALSAERYL 299
PLN02852 PLN02852
ferredoxin-NADP+ reductase
152-427 1.72e-16

ferredoxin-NADP+ reductase


Pssm-ID: 215457  Cd Length: 491  Bit Score: 81.67  E-value: 1.72e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 152 VAIIGAGPAGLGCADILVR--NGVKPVVFDKRPEIGGLLTFGI-PEFKMEKDVMKRRREIFTGMGVEFRLNVEIGTDITI 228
Cdd:PLN02852  29 VCVVGSGPAGFYTADKLLKahDGARVDIIERLPTPFGLVRSGVaPDHPETKNVTNQFSRVATDDRVSFFGNVTLGRDVSL 108
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 229 DQLLQDYDAVFMGMGTYTYMKGGFPGEELEGVYDALDFLianvnrtqGWEQNPNEYIS-----VEGKKVIVLGGGDTAMD 303
Cdd:PLN02852 109 SELRDLYHVVVLAYGAESDRRLGIPGEDLPGVLSAREFV--------WWYNGHPDCVHlppdlKSSDTAVVLGQGNVALD 180
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 304 CNR-----------TSI--------------------RQGAEQVTCA--------------YRRDEANM---PGSRREVK 335
Cdd:PLN02852 181 CARillrptdelasTDIaehalealrgssvrkvylvgRRGPVQAACTakelrellglknvrVRIKEADLtlsPEDEEELK 260
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 336 NAR-----------------------EEGVNFLFNRQPIEIV---GENGQVTGVKVVTTQLGAPDSRGRRSPEPIpGSEE 389
Cdd:PLN02852 261 ASRpkrrvyellskaaaagkcapsggQRELHFVFFRNPTRFLdsgDGNGHVAGVKLERTVLEGAAGSGKQVAVGT-GEFE 339
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|.
gi 881045658 390 VLAADAVLLAFGFRPSPAD--WFAPAN-IGLDGSGRVLAAE 427
Cdd:PLN02852 340 DLPCGLVLKSIGYKSLPVDglPFDHKRgVVPNVHGRVLSSA 380
FadH2 COG0446
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, or a related oxidoreductase ...
173-468 8.69e-14

NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, or a related oxidoreductase [Lipid transport and metabolism];


Pssm-ID: 440215 [Multi-domain]  Cd Length: 322  Bit Score: 72.15  E-value: 8.69e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 173 VKPVVFDKRPEIG----GLLTFGIPEFKMEKDVMKRRREIFTGMGVEFRLNVEIgTDITIDQ---LLQD-----YDAVFM 240
Cdd:COG0446    6 AEITVIEKGPHHSyqpcGLPYYVGGGIKDPEDLLVRTPESFERKGIDVRTGTEV-TAIDPEAktvTLRDgetlsYDKLVL 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 241 GMGTyTYMKGGFPGEELEGVY-----DALDFLIANVNrtqgweqnpneyiSVEGKKVIVLGGG------DTAMdcnrtsI 309
Cdd:COG0446   85 ATGA-RPRPPPIPGLDLPGVFtlrtlDDADALREALK-------------EFKGKRAVVIGGGpiglelAEAL------R 144
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 310 RQGAEqVTCAYRRDEAnMPGSRREV-----KNAREEGVNFLFNRQPIEIVGENGqvtgVKVVTTqlgapdsrgrrspepi 384
Cdd:COG0446  145 KRGLK-VTLVERAPRL-LGVLDPEMaalleEELREHGVELRLGETVVAIDGDDK----VAVTLT---------------- 202
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 385 pgSEEVLAADAVLLAFGFRPSpADWFAPANIGLDGSGRVLAAEQQqykfQTSNPKIFAGGDMVRGSDLVV---------- 454
Cdd:COG0446  203 --DGEEIPADLVVVAPGVRPN-TELAKDAGLALGERGWIKVDETL----QTSDPDVYAAGDCAEVPHPVTgktvyiplas 275
                        330
                 ....*....|....
gi 881045658 455 TAIWEGRQAAEGIL 468
Cdd:COG0446  276 AANKQGRVAAENIL 289
Lpd COG1249
Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex ...
152-468 5.18e-13

Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase [Energy production and conversion]; Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase is part of the Pathway/BioSystem: Glycine cleavagePyruvate oxidation


Pssm-ID: 440861 [Multi-domain]  Cd Length: 456  Bit Score: 70.89  E-value: 5.18e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 152 VAIIGAGPAGLGCADILVRNGVKPVVFDKRPeIGG------------LL-------------TFGI----PEFKMEKdVM 202
Cdd:COG1249    6 LVVIGAGPGGYVAAIRAAQLGLKVALVEKGR-LGGtclnvgcipskaLLhaaevahearhaaEFGIsagaPSVDWAA-LM 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 203 KRRREIFTGM--GVEFRL---NVEI--GTditidqllqdydAVF--------MGMGTYTYMK-----GG------FPGEE 256
Cdd:COG1249   84 ARKDKVVDRLrgGVEELLkknGVDVirGR------------ARFvdphtvevTGGETLTADHiviatGSrprvppIPGLD 151
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 257 LEGVYDALDFLianvnrtqGWEQNPneyisvegKKVIVLGGGdtamdcnrtSIrqGAE----------QVTCAYRRDEAn 326
Cdd:COG1249  152 EVRVLTSDEAL--------ELEELP--------KSLVVIGGG---------YI--GLEfaqifarlgsEVTLVERGDRL- 203
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 327 MPGSRREV-----KNAREEGVNFLFNRQPIEIVGENGqvtGVKVVTTQlgapdsrgrrspepiPGSEEVLAADAVLLAFG 401
Cdd:COG1249  204 LPGEDPEIsealeKALEKEGIDILTGAKVTSVEKTGD---GVTVTLED---------------GGGEEAVEADKVLVATG 265
                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 881045658 402 FRPSPADwFAPANIG--LDGSGRVLAAEQqqykFQTSNPKIFAGGDMVRGSDLVVTAIWEGRQAAEGIL 468
Cdd:COG1249  266 RRPNTDG-LGLEAAGveLDERGGIKVDEY----LRTSVPGIYAIGDVTGGPQLAHVASAEGRVAAENIL 329
NirB COG1251
NAD(P)H-nitrite reductase, large subunit [Energy production and conversion];
150-468 4.35e-10

NAD(P)H-nitrite reductase, large subunit [Energy production and conversion];


Pssm-ID: 440863 [Multi-domain]  Cd Length: 402  Bit Score: 61.31  E-value: 4.35e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 150 KKVAIIGAGPAGLGCADILVRNG--VKPVVFDK-------RPeiggLLTFGIPEFKMEKDVMKRRREIFTGMGVEFRLNV 220
Cdd:COG1251    2 MRIVIIGAGMAGVRAAEELRKLDpdGEITVIGAephppynRP----PLSKVLAGETDEEDLLLRPADFYEENGIDLRLGT 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 221 EIgTDI--------TIDQLLQDYDAVFMGMGTYTYMkGGFPGEELEGVY------DAlDFLIANVNRtqgweqnpneyis 286
Cdd:COG1251   78 RV-TAIdraartvtLADGETLPYDKLVLATGSRPRV-PPIPGADLPGVFtlrtldDA-DALRAALAP------------- 141
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 287 veGKKVIVLGGG----DTAMDCnrtsIRQGAEqVTCAYRRD---EANMP--GSRREVKNAREEGVNFLFNRQPIEIVGEn 357
Cdd:COG1251  142 --GKRVVVIGGGliglEAAAAL----RKRGLE-VTVVERAPrllPRQLDeeAGALLQRLLEALGVEVRLGTGVTEIEGD- 213
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 358 GQVTGVKVvttqlgapdsrgrrspepipGSEEVLAADAVLLAFGFRPspADWFApANIGLDGSGRVLAAEQqqykFQTSN 437
Cdd:COG1251  214 DRVTGVRL--------------------ADGEELPADLVVVAIGVRP--NTELA-RAAGLAVDRGIVVDDY----LRTSD 266
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|
gi 881045658 438 PKIFAGGD------MVRGSDLV--VTAIWE-GRQAAEGIL 468
Cdd:COG1251  267 PDIYAAGDcaehpgPVYGRRVLelVAPAYEqARVAAANLA 306
CzcO COG2072
Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ...
148-353 2.17e-09

Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ion transport and metabolism];


Pssm-ID: 441675 [Multi-domain]  Cd Length: 414  Bit Score: 59.11  E-value: 2.17e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 148 TDKKVAIIGAGPAGLGCADILVRNGVKPVVFDKRPEIGG---------------LLTFGIPEFKME--------KDVMKR 204
Cdd:COG2072    5 EHVDVVVIGAGQAGLAAAYHLRRAGIDFVVLEKADDVGGtwrdnrypglrldtpSHLYSLPFFPNWsddpdfptGDEILA 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 205 -----------RREIFTGMGVE----------FRLNVEIGTDITidqllqdYDAVFMGMGTYTymKG---GFPGEElegv 260
Cdd:COG2072   85 yleayadkfglRRPIRFGTEVTsarwdeadgrWTVTTDDGETLT-------ARFVVVATGPLS--RPkipDIPGLE---- 151
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 261 ydalDFLIANVnRTQGWeqnPNEYiSVEGKKVIVLGGGDTAMDCnRTSIRQGAEQVTCAYRRdeANMPGSRREVKNAREE 340
Cdd:COG2072  152 ----DFAGEQL-HSADW---RNPV-DLAGKRVLVVGTGASAVQI-APELARVAAHVTVFQRT--PPWVLPRPNYDPERGR 219
                        250
                 ....*....|...
gi 881045658 341 GVNFLFNRQPIEI 353
Cdd:COG2072  220 PANYLGLEAPPAL 232
PRK07233 PRK07233
hypothetical protein; Provisional
151-199 6.47e-09

hypothetical protein; Provisional


Pssm-ID: 235977 [Multi-domain]  Cd Length: 434  Bit Score: 57.97  E-value: 6.47e-09
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 881045658 151 KVAIIGAGPAGLGCADILVRNGVKPVVFDKRPEIGGLL-TFGIPEFKMEK 199
Cdd:PRK07233   1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAaSFEFGGLPIER 50
PTZ00188 PTZ00188
adrenodoxin reductase; Provisional
151-243 1.03e-08

adrenodoxin reductase; Provisional


Pssm-ID: 240308  Cd Length: 506  Bit Score: 57.20  E-value: 1.03e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 151 KVAIIGAGPAGLGCADILVRN-GVKPVVFDKRPEIGGLLTFGI-PEFKMEKDVMKRRREIFTGMGVEFRLNVEIGTDITI 228
Cdd:PTZ00188  41 KVGIIGAGPSALYCCKHLLKHeRVKVDIFEKLPNPYGLIRYGVaPDHIHVKNTYKTFDPVFLSPNYRFFGNVHVGVDLKM 120
                         90
                 ....*....|....*
gi 881045658 229 DQLLQDYDAVFMGMG 243
Cdd:PTZ00188 121 EELRNHYNCVIFCCG 135
PRK07208 PRK07208
hypothetical protein; Provisional
150-187 3.35e-08

hypothetical protein; Provisional


Pssm-ID: 235967 [Multi-domain]  Cd Length: 479  Bit Score: 55.67  E-value: 3.35e-08
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 881045658 150 KKVAIIGAGPAGLGCADILVRNGVKPVVFDKRPEIGGL 187
Cdd:PRK07208   5 KSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGI 42
HemY COG1232
Protoporphyrinogen oxidase HemY/PPOX [Coenzyme transport and metabolism]; Protoporphyrinogen ...
150-188 4.89e-08

Protoporphyrinogen oxidase HemY/PPOX [Coenzyme transport and metabolism]; Protoporphyrinogen oxidase HemY/PPOX is part of the Pathway/BioSystem: Heme biosynthesis


Pssm-ID: 440845 [Multi-domain]  Cd Length: 443  Bit Score: 55.22  E-value: 4.89e-08
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 881045658 150 KKVAIIGAGPAGLGCADILVRNGVKPVVFDKRPEIGGLL 188
Cdd:COG1232    2 KRVAVIGGGIAGLTAAYRLAKAGHEVTVLEASDRVGGLI 40
COG3380 COG3380
Predicted NAD/FAD-dependent oxidoreductase [General function prediction only];
150-186 4.92e-08

Predicted NAD/FAD-dependent oxidoreductase [General function prediction only];


Pssm-ID: 442607 [Multi-domain]  Cd Length: 331  Bit Score: 54.50  E-value: 4.92e-08
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 881045658 150 KKVAIIGAGPAGLGCADILVRNGVKPVVFDKRPEIGG 186
Cdd:COG3380    4 PDIAIIGAGIAGLAAARALQDAGHEVTVFEKSRGVGG 40
COG2509 COG2509
FAD-dependent dehydrogenase [General function prediction only];
145-211 2.43e-07

FAD-dependent dehydrogenase [General function prediction only];


Pssm-ID: 441999 [Multi-domain]  Cd Length: 466  Bit Score: 52.81  E-value: 2.43e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 881045658 145 VKWTDKKVAIIGAGPAGLGCADILVRNGVKPVVFDKrpeiGglltfgipefkmeKDVMKRRREIFTG 211
Cdd:COG2509   26 IPSLKYDVVIVGAGPAGLFAALELAEAGLKPLVLER----G-------------KDVEERTCPVAEF 75
NAD_binding_8 pfam13450
NAD(P)-binding Rossmann-like domain;
154-186 3.57e-07

NAD(P)-binding Rossmann-like domain;


Pssm-ID: 433218 [Multi-domain]  Cd Length: 67  Bit Score: 47.14  E-value: 3.57e-07
                          10        20        30
                  ....*....|....*....|....*....|...
gi 881045658  154 IIGAGPAGLGCADILVRNGVKPVVFDKRPEIGG 186
Cdd:pfam13450   1 IVGAGLAGLVAAALLAKRGFRVLVLEKRDRLGG 33
Ndh COG1252
NADH dehydrogenase, FAD-containing subunit [Energy production and conversion];
150-471 1.66e-06

NADH dehydrogenase, FAD-containing subunit [Energy production and conversion];


Pssm-ID: 440864 [Multi-domain]  Cd Length: 386  Bit Score: 50.13  E-value: 1.66e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 150 KKVAIIGAGPAGLGCADILVRNGVKPV---VFDKRPE----------IGGLLTFGipefkmekDVMKRRREIFTGMGVEF 216
Cdd:COG1252    2 KRIVIVGGGFAGLEAARRLRKKLGGDAevtLIDPNPYhlfqpllpevAAGTLSPD--------DIAIPLRELLRRAGVRF 73
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 217 RL-------------NVEIGTDItidqllqDYDAVFMGMGTyTYMKGGFPG-EE----LEGVYDALDFlianvnRTQgWE 278
Cdd:COG1252   74 IQgevtgidpeartvTLADGRTL-------SYDYLVIATGS-VTNFFGIPGlAEhalpLKTLEDALAL------RER-LL 138
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 279 QNPNEYISVEGKKVIVLGGGDT------AMD------CNRTSIRQGAEQVTCAYRRDEAnMPGSRREVKNA-----REEG 341
Cdd:COG1252  139 AAFERAERRRLLTIVVVGGGPTgvelagELAellrklLRYPGIDPDKVRITLVEAGPRI-LPGLGEKLSEAaekelEKRG 217
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 342 VNFLFNRQPIEIVGEngqvtgvKVVTTqlgapdsrgrrspepipgSEEVLAADAVLLAFGFRPSPadWFAPANIGLDGSG 421
Cdd:COG1252  218 VEVHTGTRVTEVDAD-------GVTLE------------------DGEEIPADTVIWAAGVKAPP--LLADLGLPTDRRG 270
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 881045658 422 RVLAAEQQQYkfqTSNPKIFAGGDMVRGSD--------LVVTAIWEGRQAAEGILDYL 471
Cdd:COG1252  271 RVLVDPTLQV---PGHPNVFAIGDCAAVPDpdgkpvpkTAQAAVQQAKVLAKNIAALL 325
YobN COG1231
Monoamine oxidase [Amino acid transport and metabolism];
148-186 2.06e-06

Monoamine oxidase [Amino acid transport and metabolism];


Pssm-ID: 440844 [Multi-domain]  Cd Length: 440  Bit Score: 49.92  E-value: 2.06e-06
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 881045658 148 TDKKVAIIGAGPAGLGCADILVRNGVKPVVFDKRPEIGG 186
Cdd:COG1231    6 RGKDVVIVGAGLAGLAAARELRKAGLDVTVLEARDRVGG 44
PRK06292 PRK06292
dihydrolipoamide dehydrogenase; Validated
152-470 2.13e-06

dihydrolipoamide dehydrogenase; Validated


Pssm-ID: 235774 [Multi-domain]  Cd Length: 460  Bit Score: 49.79  E-value: 2.13e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 152 VAIIGAGPAGLGCADILVRNGVKPVVFDKRP------------------------EIGGLLTFGI--PEFKME-KDVMKR 204
Cdd:PRK06292   6 VIVIGAGPAGYVAARRAAKLGKKVALIEKGPlggtclnvgcipskaliaaaeafhEAKHAEEFGIhaDGPKIDfKKVMAR 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 205 RREI---FTGMGVEFRLNVEigtdiTIDqLLQDYdAVFMGMGTytyMKGGfpGEELEGVYdaldFLIANVNRT----QGW 277
Cdd:PRK06292  86 VRRErdrFVGGVVEGLEKKP-----KID-KIKGT-ARFVDPNT---VEVN--GERIEAKN----IVIATGSRVppipGVW 149
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 278 EQNPNEYISVEG--------KKVIVLGGGdtamdcnrtSIrqGAE----------QVTCAYRRDE--ANM-PGSRREVKN 336
Cdd:PRK06292 150 LILGDRLLTSDDafeldklpKSLAVIGGG---------VI--GLElgqalsrlgvKVTVFERGDRilPLEdPEVSKQAQK 218
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 337 AREEGVNFLFNRQPIEIVGENGQvtgvKVVTTQLGapdsrgrrspepipGSEEVLAADAVLLAFGFRP-SPADWFAPANI 415
Cdd:PRK06292 219 ILSKEFKIKLGAKVTSVEKSGDE----KVEELEKG--------------GKTETIEADYVLVATGRRPnTDGLGLENTGI 280
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 881045658 416 GLDGSGRVLAAEqqqyKFQTSNPKIFAGGDMVRGSDLVVTAIWEGRQAAEGILDY 470
Cdd:PRK06292 281 ELDERGRPVVDE----HTQTSVPGIYAAGDVNGKPPLLHEAADEGRIAAENAAGD 331
COG1233 COG1233
Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and ...
148-196 7.77e-06

Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 440846 [Multi-domain]  Cd Length: 491  Bit Score: 48.31  E-value: 7.77e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 881045658 148 TDKKVAIIGAGPAGLGCADILVRNGVKPVVFDKRPEIGGLL-TFGIPEFK 196
Cdd:COG1233    2 MMYDVVVIGAGIGGLAAAALLARAGYRVTVLEKNDTPGGRArTFERPGFR 51
Pyr_redox_2 pfam07992
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II ...
144-243 1.02e-05

Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.


Pssm-ID: 400379 [Multi-domain]  Cd Length: 301  Bit Score: 47.31  E-value: 1.02e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658  144 SVKWTDKKVAIIGAGPAGLGCADILVRNGVKPVVFDKRPEIGglltfgipeFKMEKDVMKRRREIFTGMGVEFRLNVE-- 221
Cdd:pfam07992 147 RLKLLPKRVVVVGGGYIGVELAAALAKLGKEVTLIEALDRLL---------RAFDEEISAALEKALEKNGVEVRLGTSvk 217
                          90       100
                  ....*....|....*....|....*....
gi 881045658  222 --IGTDITIDQLLQD-----YDAVFMGMG 243
Cdd:pfam07992 218 eiIGDGDGVEVILKDgteidADLVVVAIG 246
COG3349 COG3349
Uncharacterized protein, contains NAD-binding domain and a Fe-S cluster [General function ...
150-186 1.17e-05

Uncharacterized protein, contains NAD-binding domain and a Fe-S cluster [General function prediction only];


Pssm-ID: 442577 [Multi-domain]  Cd Length: 445  Bit Score: 47.54  E-value: 1.17e-05
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 881045658 150 KKVAIIGAGPAGLGCADILVRNGVKPVVFDKRPEIGG 186
Cdd:COG3349    4 PRVVVVGGGLAGLAAAVELAEAGFRVTLLEARPRLGG 40
Pyr_redox pfam00070
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II ...
151-222 1.42e-05

Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.


Pssm-ID: 425450 [Multi-domain]  Cd Length: 80  Bit Score: 42.96  E-value: 1.42e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 881045658  151 KVAIIGAGPAGLGCADILVRNGVKPVVFDKRPEIGGlltfgipefKMEKDVMKRRREIFTGMGVEFRLNVEI 222
Cdd:pfam00070   1 RVVVVGGGYIGLELAGALARLGSKVTVVERRDRLLP---------GFDPEIAKILQEKLEKNGIEFLLNTTV 63
MurD COG0771
UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell wall/membrane/envelope biogenesis]; ...
147-183 1.46e-05

UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell wall/membrane/envelope biogenesis]; UDP-N-acetylmuramoylalanine-D-glutamate ligase is part of the Pathway/BioSystem: Mureine biosynthesis


Pssm-ID: 440534 [Multi-domain]  Cd Length: 445  Bit Score: 47.38  E-value: 1.46e-05
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 881045658 147 WTDKKVAIIGAGPAGLGCADILVRNGVKPVVFDKRPE 183
Cdd:COG0771    2 LKGKKVLVLGLGKSGLAAARLLAKLGAEVTVSDDRPA 38
Pyr_redox pfam00070
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II ...
291-368 2.96e-05

Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.


Pssm-ID: 425450 [Multi-domain]  Cd Length: 80  Bit Score: 42.19  E-value: 2.96e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658  291 KVIVLGGGDTAMDCNrTSIRQGAEQVTCAYRRDEAnMPGSRREV-----KNAREEGVNFLFNRQPIEIVGENGqvtGVKV 365
Cdd:pfam00070   1 RVVVVGGGYIGLELA-GALARLGSKVTVVERRDRL-LPGFDPEIakilqEKLEKNGIEFLLNTTVEAIEGNGD---GVVV 75

                  ...
gi 881045658  366 VTT 368
Cdd:pfam00070  76 VLT 78
HdrA COG1148
Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion];
148-464 4.62e-05

Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion];


Pssm-ID: 440762 [Multi-domain]  Cd Length: 563  Bit Score: 46.01  E-value: 4.62e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 148 TDKKVAIIGAGPAGLGCADILVRNGVKPVVFDKRPEIGGL---LTFGIPEFK--------MEKDVMKRRR-EIFTGMGVE 215
Cdd:COG1148  139 VNKRALVIGGGIAGMTAALELAEQGYEVYLVEKEPELGGRaaqLHKTFPGLDcpqcilepLIAEVEANPNiTVYTGAEVE 218
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 216 --------FRLNVEIG--TDITIdqllqDYDAVFMGMGtYTYMKGGFPGE----ELEGVYDALDF---LIANVNRTQGWE 278
Cdd:COG1148  219 evsgyvgnFTVTIKKGprEEIEI-----EVGAIVLATG-FKPYDPTKLGEygygKYPNVITNLELerlLAAGKILRPSDG 292
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 279 QNPNeyiSVegkkVIVL--GGGDTAMD---CNR----TSIRQGAE--------QVTCAYR--RdeanMPGsRRE--VKNA 337
Cdd:COG1148  293 KEPK---SV----AFIQcvGSRDEENGlpyCSRvccmYALKQALYlkeknpdaDVYIFYRdiR----TYG-KYEefYRRA 360
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 338 REEGVNFLfnR-QPIEIV-GENGQVTgVKVVTTQLGapdsrgrrspEPIpgseeVLAADAVLLAFGFRPSP-ADWFA-PA 413
Cdd:COG1148  361 REDGVRFI--RgRVAEIEeDEGGKLV-VTVEDTLLG----------EPV-----EIEADLVVLATGMVPSEdNEELAkLL 422
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|.
gi 881045658 414 NIGLDGSGRVLAAEQQQYKFQTSNPKIFAGGdMVRGSDLVVTAIWEGRQAA 464
Cdd:COG1148  423 KLPLDQDGFFLEAHPKLRPVETATDGIFLAG-AAHGPKDIPESIAQATAAA 472
DAO pfam01266
FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: ...
151-237 7.29e-05

FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.


Pssm-ID: 426168 [Multi-domain]  Cd Length: 339  Bit Score: 44.70  E-value: 7.29e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658  151 KVAIIGAGPAGLGCADILVRNGVKPVVFDKRPEIG--------GLLTFGIPE------FKMEKDVMKRRREIF--TGMGV 214
Cdd:pfam01266   1 DVVVIGGGIVGLSTAYELARRGLSVTLLERGDDPGsgasgrnaGLIHPGLRYlepselARLALEALDLWEELEeeLGIDC 80
                          90       100
                  ....*....|....*....|....*
gi 881045658  215 EFRLN--VEIGTDITIDQLLQDYDA 237
Cdd:pfam01266  81 GFRRCgvLVLARDEEEEALEKLLAA 105
HI0933_like pfam03486
HI0933-like protein;
150-185 1.46e-04

HI0933-like protein;


Pssm-ID: 427330 [Multi-domain]  Cd Length: 406  Bit Score: 44.11  E-value: 1.46e-04
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 881045658  150 KKVAIIGAGPAGLGCADILVRNGVKPVVFDKRPEIG 185
Cdd:pfam03486   1 FDVIVIGGGAAGLMAAISAAKRGRRVLLIEKGKKLG 36
YhiN COG2081
Predicted flavoprotein YhiN [General function prediction only];
153-185 1.55e-04

Predicted flavoprotein YhiN [General function prediction only];


Pssm-ID: 441684 [Multi-domain]  Cd Length: 402  Bit Score: 43.89  E-value: 1.55e-04
                         10        20        30
                 ....*....|....*....|....*....|...
gi 881045658 153 AIIGAGPAGLGCADILVRNGVKPVVFDKRPEIG 185
Cdd:COG2081    1 IVIGAGAAGLMAAITAAERGARVLLLEKNPKVG 33
UbiH COG0654
2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme ...
148-185 1.91e-04

2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme transport and metabolism, Energy production and conversion]; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases is part of the Pathway/BioSystem: Ubiquinone biosynthesis


Pssm-ID: 440419 [Multi-domain]  Cd Length: 326  Bit Score: 43.39  E-value: 1.91e-04
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 881045658 148 TDKKVAIIGAGPAGLGCADILVRNGVKPVVFDKRPEIG 185
Cdd:COG0654    2 MRTDVLIVGGGPAGLALALALARAGIRVTVVERAPPPR 39
FadH2 COG0446
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, or a related oxidoreductase ...
150-243 1.99e-04

NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, or a related oxidoreductase [Lipid transport and metabolism];


Pssm-ID: 440215 [Multi-domain]  Cd Length: 322  Bit Score: 43.26  E-value: 1.99e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 150 KKVAIIGAGPAGLGCADILVRNGVKPVVFDKRPeigGLLTFGIPEF-KMEKDVMKRRreiftgmGVEFRLNVEI----GT 224
Cdd:COG0446  125 KRAVVIGGGPIGLELAEALRKRGLKVTLVERAP---RLLGVLDPEMaALLEEELREH-------GVELRLGETVvaidGD 194
                         90       100
                 ....*....|....*....|...
gi 881045658 225 D----ITIDQLLQDYDAVFMGMG 243
Cdd:COG0446  195 DkvavTLTDGEEIPADLVVVAPG 217
PLN02172 PLN02172
flavin-containing monooxygenase FMO GS-OX
148-187 2.09e-04

flavin-containing monooxygenase FMO GS-OX


Pssm-ID: 215116 [Multi-domain]  Cd Length: 461  Bit Score: 43.70  E-value: 2.09e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 881045658 148 TDKKVAIIGAGPAGLGCADILVRNGVKPVVFDKRPEIGGL 187
Cdd:PLN02172   9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGL 48
Malic_M smart00919
Malic enzyme, NAD binding domain; Malic enzymes (malate oxidoreductases) catalyse the ...
148-198 2.18e-04

Malic enzyme, NAD binding domain; Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate.


Pssm-ID: 214912  Cd Length: 231  Bit Score: 42.79  E-value: 2.18e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 881045658   148 TDKKVAIIGAGPAGLGCADILVRNGVKP---VVFDKRpeigGLLTFG----IPEFKME 198
Cdd:smart00919  24 EDQRIVVNGAGAAGIGIAKLLVAAGVKRkniWLVDSK----GLLTKGrednLNPYKKP 77
PRK08243 PRK08243
4-hydroxybenzoate 3-monooxygenase; Validated
151-181 2.73e-04

4-hydroxybenzoate 3-monooxygenase; Validated


Pssm-ID: 236198 [Multi-domain]  Cd Length: 392  Bit Score: 43.25  E-value: 2.73e-04
                         10        20        30
                 ....*....|....*....|....*....|.
gi 881045658 151 KVAIIGAGPAGLGCADILVRNGVKPVVFDKR 181
Cdd:PRK08243   4 QVAIIGAGPAGLLLGQLLHLAGIDSVVLERR 34
Lpd COG1249
Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex ...
122-222 3.00e-04

Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase [Energy production and conversion]; Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase is part of the Pathway/BioSystem: Glycine cleavagePyruvate oxidation


Pssm-ID: 440861 [Multi-domain]  Cd Length: 456  Bit Score: 43.15  E-value: 3.00e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 122 IGNAEKYI--NDTAFALGWRPdmssvkwtdKKVAIIGAGPAGLGCADILVRNGVKPVVFDKRPEIGGlltfgipefKMEK 199
Cdd:COG1249  148 PGLDEVRVltSDEALELEELP---------KSLVVIGGGYIGLEFAQIFARLGSEVTLVERGDRLLP---------GEDP 209
                         90       100
                 ....*....|....*....|...
gi 881045658 200 DVMKRRREIFTGMGVEFRLNVEI 222
Cdd:COG1249  210 EISEALEKALEKEGIDILTGAKV 232
FMO-like pfam00743
Flavin-binding monooxygenase-like; This family includes FMO proteins, cyclohexanone ...
150-190 3.09e-04

Flavin-binding monooxygenase-like; This family includes FMO proteins, cyclohexanone mono-oxygenase and a number of different mono-oxygenases.


Pssm-ID: 395602 [Multi-domain]  Cd Length: 531  Bit Score: 43.23  E-value: 3.09e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 881045658  150 KKVAIIGAGPAGLGCADILVRNGVKPVVFDKRPEIGGLLTF 190
Cdd:pfam00743   2 KKVAVIGAGVSGLASIKCCLEEGLEPTCFERSDDIGGLWRF 42
YdhS COG4529
Uncharacterized NAD(P)/FAD-binding protein YdhS [General function prediction only];
148-185 3.22e-04

Uncharacterized NAD(P)/FAD-binding protein YdhS [General function prediction only];


Pssm-ID: 443597 [Multi-domain]  Cd Length: 466  Bit Score: 43.02  E-value: 3.22e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 881045658 148 TDKKVAIIGAGPAGLGCADILVRNGVKP---VVFDKRPEIG 185
Cdd:COG4529    4 ARKRIAIIGGGASGTALAIHLLRRAPEPlriTLFEPRPELG 44
AlaDh_PNT_C smart01002
Alanine dehydrogenase/PNT, C-terminal domain; Alanine dehydrogenase catalyzes the ...
151-183 3.57e-04

Alanine dehydrogenase/PNT, C-terminal domain; Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine.


Pssm-ID: 214966 [Multi-domain]  Cd Length: 149  Bit Score: 40.95  E-value: 3.57e-04
                           10        20        30
                   ....*....|....*....|....*....|...
gi 881045658   151 KVAIIGAGPAGLGCADILVRNGVKPVVFDKRPE 183
Cdd:smart01002  22 KVVVIGAGVVGLGAAATAKGLGAEVTVLDVRPA 54
PLN02976 PLN02976
amine oxidase
150-186 5.44e-04

amine oxidase


Pssm-ID: 215527 [Multi-domain]  Cd Length: 1713  Bit Score: 42.55  E-value: 5.44e-04
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 881045658  150 KKVAIIGAGPAGLGCADILVRNGVKPVVFDKRPEIGG 186
Cdd:PLN02976  694 KKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGG 730
FAD_oxidored pfam12831
FAD dependent oxidoreductase; This family of proteins contains FAD dependent oxidoreductases ...
152-191 1.12e-03

FAD dependent oxidoreductase; This family of proteins contains FAD dependent oxidoreductases and related proteins.


Pssm-ID: 432816 [Multi-domain]  Cd Length: 420  Bit Score: 41.06  E-value: 1.12e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 881045658  152 VAIIGAGPAGLGCADILVRNGVKPVVFDKRPEIGGLLTFG 191
Cdd:pfam12831   2 VVVVGGGPAGVAAAIAAARAGAKVLLVERRGFLGGMLTSG 41
TIGR00275 TIGR00275
flavoprotein, HI0933 family; The model when searched with a partial length search brings in ...
153-185 2.43e-03

flavoprotein, HI0933 family; The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae. [Unknown function, Enzymes of unknown specificity]


Pssm-ID: 272992 [Multi-domain]  Cd Length: 400  Bit Score: 40.27  E-value: 2.43e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 881045658  153 AIIGAGPAGLGCADILVRNGVKPVVFDKRPEIG 185
Cdd:TIGR00275   1 IIIGGGAAGLMAAITAARAGLSVLLLEKNKKIG 33
PRK06292 PRK06292
dihydrolipoamide dehydrogenase; Validated
128-209 2.47e-03

dihydrolipoamide dehydrogenase; Validated


Pssm-ID: 235774 [Multi-domain]  Cd Length: 460  Bit Score: 40.16  E-value: 2.47e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 128 YINDTAFALGWRPdmssvkwtdKKVAIIGAGPAGLGCADILVRNGVKPVVFDKRPEIGGLltfgipefkMEKDVMKRRRE 207
Cdd:PRK06292 157 LTSDDAFELDKLP---------KSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPL---------EDPEVSKQAQK 218

                 ..
gi 881045658 208 IF 209
Cdd:PRK06292 219 IL 220
PRK07588 PRK07588
FAD-binding domain;
150-227 3.06e-03

FAD-binding domain;


Pssm-ID: 169028 [Multi-domain]  Cd Length: 391  Bit Score: 39.72  E-value: 3.06e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 150 KKVAIIGAGPAGLGCADILVRNGVKPVVFDKRPEI--GG-LLTFGIPEFkmekDVMKRrreiftgMGVEFRLNvEIGTDI 226
Cdd:PRK07588   1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELrtGGyMVDFWGVGY----EVAKR-------MGITDQLR-EAGYQI 68

                 .
gi 881045658 227 T 227
Cdd:PRK07588  69 E 69
Thi4 pfam01946
Thi4 family; This family includes Swiss:P32318 a putative thiamine biosynthetic enzyme.
145-186 4.06e-03

Thi4 family; This family includes Swiss:P32318 a putative thiamine biosynthetic enzyme.


Pssm-ID: 460393  Cd Length: 232  Bit Score: 38.61  E-value: 4.06e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 881045658  145 VKWTDKKVAIIGAGPAGLGCADILVRN-GVKPVVFDKRPEIGG 186
Cdd:pfam01946  13 DDYAESDVVIVGAGSSGLTAAYYLAKNrGLKVAIIERSVSPGG 55
mhpA PRK06183
bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase;
152-184 4.70e-03

bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase;


Pssm-ID: 235727 [Multi-domain]  Cd Length: 500  Bit Score: 39.50  E-value: 4.70e-03
                         10        20        30
                 ....*....|....*....|....*....|...
gi 881045658 152 VAIIGAGPAGLGCADILVRNGVKPVVFDKRPEI 184
Cdd:PRK06183  13 VVIVGAGPVGLTLANLLGQYGVRVLVLERWPTL 45
Pyr_redox_3 pfam13738
Pyridine nucleotide-disulphide oxidoreductase;
282-424 4.83e-03

Pyridine nucleotide-disulphide oxidoreductase;


Pssm-ID: 404603 [Multi-domain]  Cd Length: 296  Bit Score: 38.74  E-value: 4.83e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658  282 NEYISVEGKKVIVLGGGDTAMDCNRTSIRQGAEqVTCAYRRDEANMPGS----------RREVKNAREEG-VNFLFNRQP 350
Cdd:pfam13738 148 KDFHPYAGQKVVVIGGYNSAVDAALELVRKGAR-VTVLYRGSEWEDRDSdpsyslspdtLNRLEELVKNGkIKAHFNAEV 226
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 881045658  351 IEIVGENGQVtgvkVVTTQLGapdsrgrrspepipgsEEVLAADAVLLAFGFRPSpADWFAPANIGLDGSGRVL 424
Cdd:pfam13738 227 KEITEVDVSY----KVHTEDG----------------RKVTSNDDPILATGYHPD-LSFLKKGLFELDEDGRPV 279
NAD_bind_2_malic_enz cd05311
NAD(P) binding domain of malic enzyme (ME), subgroup 2; Malic enzyme (ME), a member of the ...
149-181 5.22e-03

NAD(P) binding domain of malic enzyme (ME), subgroup 2; Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts.


Pssm-ID: 133453 [Multi-domain]  Cd Length: 226  Bit Score: 38.40  E-value: 5.22e-03
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 881045658 149 DKKVAIIGAGPAGLGCADILVRNGVKP---VVFDKR 181
Cdd:cd05311   25 EVKIVINGAGAAGIAIARLLLAAGAKPeniVVVDSK 60
PRK06753 PRK06753
hypothetical protein; Provisional
151-184 5.29e-03

hypothetical protein; Provisional


Pssm-ID: 168661 [Multi-domain]  Cd Length: 373  Bit Score: 38.90  E-value: 5.29e-03
                         10        20        30
                 ....*....|....*....|....*....|....
gi 881045658 151 KVAIIGAGPAGLGCADILVRNGVKPVVFDKRPEI 184
Cdd:PRK06753   2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESV 35
PRK05249 PRK05249
Si-specific NAD(P)(+) transhydrogenase;
338-469 5.45e-03

Si-specific NAD(P)(+) transhydrogenase;


Pssm-ID: 235373 [Multi-domain]  Cd Length: 461  Bit Score: 38.98  E-value: 5.45e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 338 REEGVNFLFNRQPIEIVGENGQVtgvkVVTTQlgapdsrgrrspepipgSEEVLAADAVLLAFGfRPSPADWFAPANIGL 417
Cdd:PRK05249 227 RDSGVTIRHNEEVEKVEGGDDGV----IVHLK-----------------SGKKIKADCLLYANG-RTGNTDGLNLENAGL 284
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 881045658 418 --DGSGRVLAAEQqqykFQTSNPKIFAGGDMVRGSDLVVTAIWEGRQAAEGILD 469
Cdd:PRK05249 285 eaDSRGQLKVNEN----YQTAVPHIYAVGDVIGFPSLASASMDQGRIAAQHAVG 334
PLN00093 PLN00093
geranylgeranyl diphosphate reductase; Provisional
151-205 6.81e-03

geranylgeranyl diphosphate reductase; Provisional


Pssm-ID: 177713 [Multi-domain]  Cd Length: 450  Bit Score: 38.96  E-value: 6.81e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 881045658 151 KVAIIGAGPAGLGCADILVRNGVKPVVFDKRPE----IGGlltfGIP-----EFKMEKDVMKRR 205
Cdd:PLN00093  41 RVAVIGGGPAGACAAETLAKGGIETFLIERKLDnakpCGG----AIPlcmvgEFDLPLDIIDRK 100
PRK06116 PRK06116
glutathione reductase; Validated
339-465 8.25e-03

glutathione reductase; Validated


Pssm-ID: 235701 [Multi-domain]  Cd Length: 450  Bit Score: 38.60  E-value: 8.25e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 881045658 339 EEGVNFLFNRQPIEIV-GENGQVTgvkvVTTQLGapdsrgrrspepipgseEVLAADAVLLAFGFRPSpADWFAPANIG- 416
Cdd:PRK06116 220 KKGIRLHTNAVPKAVEkNADGSLT----LTLEDG-----------------ETLTVDCLIWAIGREPN-TDGLGLENAGv 277
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 881045658 417 -LDGSGRVLAAEQQQykfqTSNPKIFAGGDMVRGSDLVVTAIWEGRQAAE 465
Cdd:PRK06116 278 kLNEKGYIIVDEYQN----TNVPGIYAVGDVTGRVELTPVAIAAGRRLSE 323
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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