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Conserved domains on  [gi|875097176|emb|CGP55845|]
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outer membrane lipoprotein [Salmonella enterica subsp. enterica serovar Typhi]

Protein Classification

YgdI/YgdR family lipoprotein( domain architecture ID 3632)

YgdI/YgdR family lipoprotein is a DUF903 domain-containing protein; similar to Escherichia coli lipoproteins, YgdI and YgdR

CATH:  2.30.30.100
Gene Ontology:  GO:0005886
SCOP:  4001696

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF903 super family cl05512
Bacterial protein of unknown function (DUF903); This family consists of several small ...
 2-71 9.84e-16

Bacterial protein of unknown function (DUF903); This family consists of several small bacterial proteins several of which are classified as putative lipoproteins. The function of this family is unknown.


The actual alignment was detected with superfamily member NF033216:

Pssm-ID: 471259  Cd Length: 71  Bit Score: 64.44  E-value: 9.84e-16
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 875097176  2 QKCSLITVLSLSVLMLAGCTTTYTMTTRTGEIIETQGKPEVDTATGMTKYADVYGYHRVIKTSEIVQTTE 71
Cdd:NF033216  1 KKLLAALLAALALLALAGCSSPYVITTNDGRTIVTDGKPEYDKDTGLYEYEDADGKTQQINKDDVKTIKE 70
 
Name Accession Description Interval E-value
lipo_YgdI_YgdR NF033216
YgdI/YgdR family lipoprotein; Members of this family are exclusively lipoproteins of small ...
 2-71 9.84e-16

YgdI/YgdR family lipoprotein; Members of this family are exclusively lipoproteins of small size, including YgdI and YgdR from E. coli K-12.


Pssm-ID: 468001  Cd Length: 71  Bit Score: 64.44  E-value: 9.84e-16
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 875097176  2 QKCSLITVLSLSVLMLAGCTTTYTMTTRTGEIIETQGKPEVDTATGMTKYADVYGYHRVIKTSEIVQTTE 71
Cdd:NF033216  1 KKLLAALLAALALLALAGCSSPYVITTNDGRTIVTDGKPEYDKDTGLYEYEDADGKTQQINKDDVKTIKE 70
DUF903 pfam06004
Bacterial protein of unknown function (DUF903); This family consists of several small ...
 31-71 5.08e-12

Bacterial protein of unknown function (DUF903); This family consists of several small bacterial proteins several of which are classified as putative lipoproteins. The function of this family is unknown.


Pssm-ID: 428717  Cd Length: 49  Bit Score: 54.47  E-value: 5.08e-12
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 875097176  31 GEIIETQGKPEVDTATGMTKYADVYGYHRVIKTSEIVQTTE 71
Cdd:pfam06004  9 GRTIVTDGKPKYDKDTGMYEYEDEEGKEVQINKDDVKQIKE 49
 
Name Accession Description Interval E-value
lipo_YgdI_YgdR NF033216
YgdI/YgdR family lipoprotein; Members of this family are exclusively lipoproteins of small ...
 2-71 9.84e-16

YgdI/YgdR family lipoprotein; Members of this family are exclusively lipoproteins of small size, including YgdI and YgdR from E. coli K-12.


Pssm-ID: 468001  Cd Length: 71  Bit Score: 64.44  E-value: 9.84e-16
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 875097176  2 QKCSLITVLSLSVLMLAGCTTTYTMTTRTGEIIETQGKPEVDTATGMTKYADVYGYHRVIKTSEIVQTTE 71
Cdd:NF033216  1 KKLLAALLAALALLALAGCSSPYVITTNDGRTIVTDGKPEYDKDTGLYEYEDADGKTQQINKDDVKTIKE 70
DUF903 pfam06004
Bacterial protein of unknown function (DUF903); This family consists of several small ...
 31-71 5.08e-12

Bacterial protein of unknown function (DUF903); This family consists of several small bacterial proteins several of which are classified as putative lipoproteins. The function of this family is unknown.


Pssm-ID: 428717  Cd Length: 49  Bit Score: 54.47  E-value: 5.08e-12
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 875097176  31 GEIIETQGKPEVDTATGMTKYADVYGYHRVIKTSEIVQTTE 71
Cdd:pfam06004  9 GRTIVTDGKPKYDKDTGMYEYEDEEGKEVQINKDDVKQIKE 49
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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