NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|87083597|gb|ABD19290|]
View 

cytochrome b (mitochondrion) [Daphnia pulex]

Protein Classification

cytochrome b/b6( domain architecture ID 11475928)

cytochrome b/b6 (PetB) is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme; cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes; in plants and cyanobacteria, cytochrome b6 is analogous to cytochrome b and contains two chains: helices A-D (encoded by petB) and helices E-H (encoded by petD)

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 11-366 0e+00

cytochrome b; Provisional


:

Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 632.97  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597   11 MKILNSAVVDLPAPSNISSWWNFGSLLGLCLVTQIFTGIFLAMHYTPHVEMAFSSVIHIIRDVNYGWLLRTIHANGASFF 90
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597   91 FICLYLHVGRGLYYGSYLFLLTWFSGILLLLLTMAAAFMGYVLPWGQMSFWGATVITNLLSAIPYMGDMIVQWLWGGFAV 170
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597  171 DNATLNRFFSFHFLIPFIIMGVVIIHLLFLHQTGSNNPLGLKSDSDKIPFHPYFTIKDLVGFLFMLSFLIILTLLAPNLL 250
Cdd:MTH00156 161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597  251 GDPENFNPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIMPIWHKSEMKGLEFYPFNKFLFWSLIG 330
Cdd:MTH00156 241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                        330       340       350
                 ....*....|....*....|....*....|....*.
gi 87083597  331 TVFILTWIGAKPVEDPYVLVGQLFTAIYFSYFILAP 366
Cdd:MTH00156 321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 11-366 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 632.97  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597   11 MKILNSAVVDLPAPSNISSWWNFGSLLGLCLVTQIFTGIFLAMHYTPHVEMAFSSVIHIIRDVNYGWLLRTIHANGASFF 90
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597   91 FICLYLHVGRGLYYGSYLFLLTWFSGILLLLLTMAAAFMGYVLPWGQMSFWGATVITNLLSAIPYMGDMIVQWLWGGFAV 170
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597  171 DNATLNRFFSFHFLIPFIIMGVVIIHLLFLHQTGSNNPLGLKSDSDKIPFHPYFTIKDLVGFLFMLSFLIILTLLAPNLL 250
Cdd:MTH00156 161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597  251 GDPENFNPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIMPIWHKSEMKGLEFYPFNKFLFWSLIG 330
Cdd:MTH00156 241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                        330       340       350
                 ....*....|....*....|....*....|....*.
gi 87083597  331 TVFILTWIGAKPVEDPYVLVGQLFTAIYFSYFILAP 366
Cdd:MTH00156 321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
22-365 6.90e-121

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 354.87  E-value: 6.90e-121
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597  22 PAPSNISSWWNFGSLLGLCLVTQIFTGIFLAMHYTPHVEMAFSSVIHIIRDVNYGWLLRTIHANGASFFFICLYLHVGRG 101
Cdd:COG1290  31 PFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRG 110

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597 102 LYYGSYLF--LLTWFSGILLLLLTMAAAFMGYVLPWGQMSFWGATVITNLLSAIPYMGDMIVQWLWGGFAVDNATLNRFF 179
Cdd:COG1290 111 FFYGAYKKprELNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFF 190

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597 180 SFH-FLIPFIIMGVVIIHLLFLHQTGSNNPLG----LKSDSDKIPFHPYFTIKDLVGFLFMLSFLIILTLLAPNllGDPE 254
Cdd:COG1290 191 ALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPP 268

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597 255 NFNPANPLVTPVHIQPEWYFLFAYAILRSIP--NKLGGVLALLLSILILAIMPIWHKSEMKGLEFYPFNKFLFWSLIGTV 332
Cdd:COG1290 269 NYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFF 348

                       330       340       350
                ....*....|....*....|....*....|...
gi 87083597 333 FILTWIGAKPveDPYVLVGQLFTAIYFSYFILA 365
Cdd:COG1290 349 IVLTILGANP--PIATLLGSINTVTYFAFFLIV 379
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 9-206 3.30e-88

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 264.62  E-value: 3.30e-88
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597   9 PLMKILNSAVVDLPAPSNISSWWNFGSLLGLCLVTQIFTGIFLAMHYTPHVEMAFSSVIHIIRDVNYGWLLRTIHANGAS 88
Cdd:cd00284   1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597  89 FFFICLYLHVGRGLYYGSY--LFLLTWFSGILLLLLTMAAAFMGYVLPWGQMSFWGATVITNLLSAIPYMGDMIVQWLWG 166
Cdd:cd00284  81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                       170       180       190       200
                ....*....|....*....|....*....|....*....|
gi 87083597 167 GFAVDNATLNRFFSFHFLIPFIIMGVVIIHLLFLHQTGSN 206
Cdd:cd00284 161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
18-204 3.25e-78

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 238.82  E-value: 3.25e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597    18 VVDLPAPSNISSWWNFGSLLGLCLVTQIFTGIFLAMHYTPHVEMAFSSVIHIIRDVNYGWLLRTIHANGASFFFICLYLH 97
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597    98 VGRGLYYG--SYLFLLTWFSGILLLLLTMAAAFMGYVLPWGQMSFWGATVITNLLSAIPYMGDMIVQWLWGGFAVDNATL 175
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 87083597   176 NRFFSFHFLIPFIIMGVVIIHLLFLHQTG 204
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 236-291 1.26e-07

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 50.95  E-value: 1.26e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 87083597   236 LSFLIILTLLAPNLLGDPenfnpANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGV 291
Cdd:TIGR01156  48 IACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGV 98
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 11-366 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 632.97  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597   11 MKILNSAVVDLPAPSNISSWWNFGSLLGLCLVTQIFTGIFLAMHYTPHVEMAFSSVIHIIRDVNYGWLLRTIHANGASFF 90
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597   91 FICLYLHVGRGLYYGSYLFLLTWFSGILLLLLTMAAAFMGYVLPWGQMSFWGATVITNLLSAIPYMGDMIVQWLWGGFAV 170
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597  171 DNATLNRFFSFHFLIPFIIMGVVIIHLLFLHQTGSNNPLGLKSDSDKIPFHPYFTIKDLVGFLFMLSFLIILTLLAPNLL 250
Cdd:MTH00156 161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597  251 GDPENFNPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIMPIWHKSEMKGLEFYPFNKFLFWSLIG 330
Cdd:MTH00156 241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                        330       340       350
                 ....*....|....*....|....*....|....*.
gi 87083597  331 TVFILTWIGAKPVEDPYVLVGQLFTAIYFSYFILAP 366
Cdd:MTH00156 321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
CYTB MTH00145
cytochrome b; Provisional
 1-376 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 610.37  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597    1 MATLRNTHPLMKILNSAVVDLPAPSNISSWWNFGSLLGLCLVTQIFTGIFLAMHYTPHVEMAFSSVIHIIRDVNYGWLLR 80
Cdd:MTH00145   2 LSPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLR 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597   81 TIHANGASFFFICLYLHVGRGLYYGSYLFLLTWFSGILLLLLTMAAAFMGYVLPWGQMSFWGATVITNLLSAIPYMGDMI 160
Cdd:MTH00145  82 SLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKML 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597  161 VQWLWGGFAVDNATLNRFFSFHFLIPFIIMGVVIIHLLFLHQTGSNNPLGLKSDSDKIPFHPYFTIKDLVGFLFMLSFLI 240
Cdd:MTH00145 162 VEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLV 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597  241 ILTLLAPNLLGDPENFNPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIMPIWHKSEMKGLEFYPF 320
Cdd:MTH00145 242 FLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPL 321

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 87083597  321 NKFLFWSLIGTVFILTWIGAKPVEDPYVLVGQLFTAIYFSYFILAPLTLKIWDKIL 376
Cdd:MTH00145 322 NQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLILPLVQKLWDNIL 377
CYTB MTH00131
cytochrome b; Provisional
 1-376 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 601.26  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597    1 MATLRNTHPLMKILNSAVVDLPAPSNISSWWNFGSLLGLCLVTQIFTGIFLAMHYTPHVEMAFSSVIHIIRDVNYGWLLR 80
Cdd:MTH00131   1 MASLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597   81 TIHANGASFFFICLYLHVGRGLYYGSYLFLLTWFSGILLLLLTMAAAFMGYVLPWGQMSFWGATVITNLLSAIPYMGDMI 160
Cdd:MTH00131  81 NLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597  161 VQWLWGGFAVDNATLNRFFSFHFLIPFIIMGVVIIHLLFLHQTGSNNPLGLKSDSDKIPFHPYFTIKDLVGFLFMLSFLI 240
Cdd:MTH00131 161 VQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALT 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597  241 ILTLLAPNLLGDPENFNPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIMPIWHKSEMKGLEFYPF 320
Cdd:MTH00131 241 SLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPL 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 87083597  321 NKFLFWSLIGTVFILTWIGAKPVEDPYVLVGQLFTAIYFSYF-ILAPLTLKIWDKIL 376
Cdd:MTH00131 321 TQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFlVLMPLAGWLENKAL 377
CYTB MTH00119
cytochrome b; Provisional
 4-376 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 592.65  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597    4 LRNTHPLMKILNSAVVDLPAPSNISSWWNFGSLLGLCLVTQIFTGIFLAMHYTPHVEMAFSSVIHIIRDVNYGWLLRTIH 83
Cdd:MTH00119   5 LRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLH 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597   84 ANGASFFFICLYLHVGRGLYYGSYLFLLTWFSGILLLLLTMAAAFMGYVLPWGQMSFWGATVITNLLSAIPYMGDMIVQW 163
Cdd:MTH00119  85 ANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEW 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597  164 LWGGFAVDNATLNRFFSFHFLIPFIIMGVVIIHLLFLHQTGSNNPLGLKSDSDKIPFHPYFTIKDLVGFLFMLSFLIILT 243
Cdd:MTH00119 165 IWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLA 244

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597  244 LLAPNLLGDPENFNPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIMPIWHKSEMKGLEFYPFNKF 323
Cdd:MTH00119 245 LFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQL 324

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....
gi 87083597  324 LFWSLIGTVFILTWIGAKPVEDPYVLVGQLFTAIYFS-YFILAPLTLKIWDKIL 376
Cdd:MTH00119 325 LFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTiLLILFPLLGALENKML 378
CYTB MTH00074
cytochrome b; Provisional
 1-376 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 585.11  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597    1 MATLRNTHPLMKILNSAVVDLPAPSNISSWWNFGSLLGLCLVTQIFTGIFLAMHYTPHVEMAFSSVIHIIRDVNYGWLLR 80
Cdd:MTH00074   2 AHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMR 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597   81 TIHANGASFFFICLYLHVGRGLYYGSYLFLLTWFSGILLLLLTMAAAFMGYVLPWGQMSFWGATVITNLLSAIPYMGDMI 160
Cdd:MTH00074  82 NIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTL 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597  161 VQWLWGGFAVDNATLNRFFSFHFLIPFIIMGVVIIHLLFLHQTGSNNPLGLKSDSDKIPFHPYFTIKDLVGFLFMLSFLI 240
Cdd:MTH00074 162 VQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALA 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597  241 ILTLLAPNLLGDPENFNPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIMPIWHKSEMKGLEFYPF 320
Cdd:MTH00074 242 LLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPL 321

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 87083597  321 NKFLFWSLIGTVFILTWIGAKPVEDPYVLVGQLFTAIYFSYFILA-PLTLKIWDKIL 376
Cdd:MTH00074 322 TQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIiPLTGWLENKLL 378
CYTB MTH00191
cytochrome b; Provisional
 4-364 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 583.80  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597    4 LRNTHPLMKILNSAVVDLPAPSNISSWWNFGSLLGLCLVTQIFTGIFLAMHYTPHVEMAFSSVIHIIRDVNYGWLLRTIH 83
Cdd:MTH00191   1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597   84 ANGASFFFICLYLHVGRGLYYGSYLFLLTWFSGILLLLLTMAAAFMGYVLPWGQMSFWGATVITNLLSAIPYMGDMIVQW 163
Cdd:MTH00191  81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQW 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597  164 LWGGFAVDNATLNRFFSFHFLIPFIIMGVVIIHLLFLHQTGSNNPLGLKSDSDKIPFHPYFTIKDLVGFLFMLSFLIILT 243
Cdd:MTH00191 161 LWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLV 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597  244 LLAPNLLGDPENFNPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIMPIWHKSEMKGLEFYPFNKF 323
Cdd:MTH00191 241 LFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQV 320

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|.
gi 87083597  324 LFWSLIGTVFILTWIGAKPVEDPYVLVGQLFTAIYFSYFIL 364
Cdd:MTH00191 321 VFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLL 361
CYTB MTH00100
cytochrome b; Provisional
 1-376 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 575.82  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597    1 MATLRNTHPLMKILNSAVVDLPAPSNISSWWNFGSLLGLCLVTQIFTGIFLAMHYTPHVEMAFSSVIHIIRDVNYGWLLR 80
Cdd:MTH00100   1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597   81 TIHANGASFFFICLYLHVGRGLYYGSYLFLLTWFSGILLLLLTMAAAFMGYVLPWGQMSFWGATVITNLLSAIPYMGDMI 160
Cdd:MTH00100  81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597  161 VQWLWGGFAVDNATLNRFFSFHFLIPFIIMGVVIIHLLFLHQTGSNNPLGLKSDSDKIPFHPYFTIKDLVGFLFMLSFLI 240
Cdd:MTH00100 161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597  241 ILTLLAPNLLGDPENFNPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIMPIWHKSEMKGLEFYPF 320
Cdd:MTH00100 241 LLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPL 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 87083597  321 NKFLFWSLIGTVFILTWIGAKPVEDPYVLVGQLFTAIYFSYF-ILAPLTLKIWDKIL 376
Cdd:MTH00100 321 SQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIIlILMPIASLIENNLL 377
CYTB MTH00016
cytochrome b; Validated
 4-376 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 572.39  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597    4 LRNTHPLMKILNSAVVDLPAPSNISSWWNFGSLLGLCLVTQIFTGIFLAMHYTPHVEMAFSSVIHIIRDVNYGWLLRTIH 83
Cdd:MTH00016   5 MRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLH 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597   84 ANGASFFFICLYLHVGRGLYYGSYLFLLTWFSGILLLLLTMAAAFMGYVLPWGQMSFWGATVITNLLSAIPYMGDMIVQW 163
Cdd:MTH00016  85 ANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQW 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597  164 LWGGFAVDNATLNRFFSFHFLIPFIIMGVVIIHLLFLHQTGSNNPLGLKSDSDKIPFHPYFTIKDLVGFLFMLSFLIILT 243
Cdd:MTH00016 165 LWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVV 244

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597  244 LLAPNLLGDPENFNPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIMPIWHKSEMKGLEFYPFNKF 323
Cdd:MTH00016 245 LLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQI 324

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|...
gi 87083597  324 LFWSLIGTVFILTWIGAKPVEDPYVLVGQLFTAIYFSYFILAPLTLKIWDKIL 376
Cdd:MTH00016 325 LFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYFMINPLLMKLWDKLL 377
CYTB MTH00034
cytochrome b; Validated
 4-376 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 547.00  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597    4 LRNTHPLMKILNSAVVDLPAPSNISSWWNFGSLLGLCLVTQIFTGIFLAMHYTPHVEMAFSSVIHIIRDVNYGWLLRTIH 83
Cdd:MTH00034   4 LRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIH 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597   84 ANGASFFFICLYLHVGRGLYYGSYLFLLTWFSGILLLLLTMAAAFMGYVLPWGQMSFWGATVITNLLSAIPYMGDMIVQW 163
Cdd:MTH00034  84 ANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQW 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597  164 LWGGFAVDNATLNRFFSFHFLIPFIIMGVVIIHLLFLHQTGSNNPLGLKSDSDKIPFHPYFTIKDLVGFLFMLSFLIILT 243
Cdd:MTH00034 164 IWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLA 243

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597  244 LLAPNLLGDPENFNPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIMPIWHKSEMKGLEFYPFNKF 323
Cdd:MTH00034 244 LLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQI 323

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....
gi 87083597  324 LFWSLIGTVFILTWIGAKPVEDPYVLVGQLFTAIYFSYFILA-PLTLKIWDKIL 376
Cdd:MTH00034 324 AFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFFfPLISYLENKLI 377
CYTB MTH00224
cytochrome b; Provisional
 4-376 0e+00

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 513.70  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597    4 LRNTHPLMKILNSAVVDLPAPSNISSWWNFGSLLGLCLVTQIFTGIFLAMHYTPHVEMAFSSVIHIIRDVNYGWLLRTIH 83
Cdd:MTH00224   5 FRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIH 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597   84 ANGASFFFICLYLHVGRGLYYGSYLFLLTWFSGILLLLLTMAAAFMGYVLPWGQMSFWGATVITNLLSAIPYMGDMIVQW 163
Cdd:MTH00224  85 ANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEW 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597  164 LWGGFAVDNATLNRFFSFHFLIPFIIMGVVIIHLLFLHQTGSNNPLGLKSDSDKIPFHPYFTIKDLVGFLFMLSFLIILT 243
Cdd:MTH00224 165 IWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMV 244

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597  244 LLAPNLLGDPENFNPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIMPIWHKSEMKGLEFYPFNKF 323
Cdd:MTH00224 245 LFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQL 324

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|...
gi 87083597  324 LFWSLIGTVFILTWIGAKPVEDPYVLVGQLFTAIYFSYFILAPLTLKIWDKIL 376
Cdd:MTH00224 325 LFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFSYFIISPAISKLWDDLL 377
CYTB MTH00022
cytochrome b; Validated
 4-376 2.85e-175

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 492.68  E-value: 2.85e-175
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597    4 LRNTHPLMKILNSAVVDLPAPSNISSWWNFGSLLGLCLVTQIFTGIFLAMHYTPHVEMAFSSVIHIIRDVNYGWLLRTIH 83
Cdd:MTH00022   3 LRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLH 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597   84 ANGASFFFICLYLHVGRGLYYGSYLFLLTWFSGILLLLLTMAAAFMGYVLPWGQMSFWGATVITNLLSAIPYMGDMIVQW 163
Cdd:MTH00022  83 ANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQW 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597  164 LWGGFAVDNATLNRFFSFHFLIPFIIMGVVIIHLLFLHQTGSNNPLGLKSDSDKIPFHPYFTIKDLVGFLFMLSFLIILT 243
Cdd:MTH00022 163 VWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIV 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597  244 LLAPNLLGDPENFNPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIMPIWHKSEMKGLEFYPFNKF 323
Cdd:MTH00022 243 YFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRM 322

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....
gi 87083597  324 LFWSLIGTVFILTWIGAKPVEDPYVLVGQLFTAIYFSYF-ILAPLTLKIWDKIL 376
Cdd:MTH00022 323 AFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFlVLIPLLGELENQLL 376
CYTB MTH00053
cytochrome b; Provisional
 3-376 3.12e-170

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 479.97  E-value: 3.12e-170
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597    3 TLRNTHPLMKILNSAVVDLPAPSNISSWWNFGSLLGLCLVTQIFTGIFLAMHYTPHVEMAFSSVIHIIRDVNYGWLLRTI 82
Cdd:MTH00053   4 TIRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597   83 HANGASFFFICLYLHVGRGLYYGSYLFLLTWFSGILLLLLTMAAAFMGYVLPWGQMSFWGATVITNLLSAIPYMGDMIVQ 162
Cdd:MTH00053  84 HANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVR 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597  163 WLWGGFAVDNATLNRFFSFHFLIPFIIMGVVIIHLLFLHQTGSNNPLGLKSDSDKIPFHPYFTIKDLVGFLFMLSFLIIL 242
Cdd:MTH00053 164 WVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSII 243

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597  243 TLLAPNLLGDPENFNPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIMPIWHKSEMKGLEFYPFNK 322
Cdd:MTH00053 244 VFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSK 323

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 87083597  323 FLFWSLIGTVFILTWIGAKPVEDPYVLVGQLFTAIYFSYF-ILAPLTLKIWDKIL 376
Cdd:MTH00053 324 ILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFlILMPLAGYLENKLL 378
CYTB MTH00033
cytochrome b; Provisional
 18-367 1.24e-136

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 394.69  E-value: 1.24e-136
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597   18 VVDLPAPSNISSWWNFGSLLGLCLVTQIFTGIFLAMHYTPHVEMAFSSVIHIIRDVNYGWLLRTIHANGASFFFICLYLH 97
Cdd:MTH00033  15 IIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCH 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597   98 VGRGLYYGSYLFLLTWFSGILLLLLTMAAAFMGYVLPWGQMSFWGATVITNLLSAIPYMGDMIVQWLWGGFAVDNATLNR 177
Cdd:MTH00033  95 IGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNR 174

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597  178 FFSFHFLIPFIIMGVVIIHLLFLHQTGSNNPLGLKSDSDKIPFHPYFTIKDLVGFLFMLSFLIILTL--LAPNLLGDPEN 255
Cdd:MTH00033 175 FFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIepRIETLLQDPEN 254

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597  256 FNPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIMPIWHKSEMKGLEFYPFNKFLFWSLIGTVFIL 335
Cdd:MTH00033 255 FIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIIL 334

                        330       340       350
                 ....*....|....*....|....*....|....
gi 87083597  336 TWIGAKPV-EDPYVLVGQLFTAIYFSYF-ILAPL 367
Cdd:MTH00033 335 TWIGSAPAgADPYVLIGRIATIFYFGYFlVLVPL 368
CYTB MTH00086
cytochrome b; Provisional
 12-364 1.74e-123

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 360.02  E-value: 1.74e-123
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597   12 KILNSAVVDLPAPSNISSWWNFGSLLGLCLVTQIFTGIFLAMHYTPHVEMAFSSVIHIIRDVNYGWLLRTIHANGASFFF 91
Cdd:MTH00086   1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597   92 ICLYLHVGRGLYYGSYLFLLTWFSGILLLLLTMAAAFMGYVLPWGQMSFWGATVITNLLSAIPYMGDMIVQWLWGGFAVD 171
Cdd:MTH00086  81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597  172 NATLNRFFSFHFLIPFIIMGVVIIHLLFLHQTGSNNPLGLKSDSDKIPFHPYFTIKDLVGFLFMLsFLIILTLLAPNLLG 251
Cdd:MTH00086 161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNIIFWL-VFIIFSLFYPFNLG 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597  252 DPENFNPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIMpIWHKSEMKGLEfyPFNKFLFWSLIGT 331
Cdd:MTH00086 240 DPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFF-IFVNNYTSCLN--KLNKFLVFSFIVV 316

                        330       340       350
                 ....*....|....*....|....*....|...
gi 87083597  332 VFILTWIGAKPVEDPYVLVGQLFTAIYFSYFIL 364
Cdd:MTH00086 317 NVILSWLGQCLVEYPFLFLSQIFSFIYFFLILL 349
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
22-365 6.90e-121

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 354.87  E-value: 6.90e-121
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597  22 PAPSNISSWWNFGSLLGLCLVTQIFTGIFLAMHYTPHVEMAFSSVIHIIRDVNYGWLLRTIHANGASFFFICLYLHVGRG 101
Cdd:COG1290  31 PFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRG 110

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597 102 LYYGSYLF--LLTWFSGILLLLLTMAAAFMGYVLPWGQMSFWGATVITNLLSAIPYMGDMIVQWLWGGFAVDNATLNRFF 179
Cdd:COG1290 111 FFYGAYKKprELNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFF 190

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597 180 SFH-FLIPFIIMGVVIIHLLFLHQTGSNNPLG----LKSDSDKIPFHPYFTIKDLVGFLFMLSFLIILTLLAPNllGDPE 254
Cdd:COG1290 191 ALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPP 268

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597 255 NFNPANPLVTPVHIQPEWYFLFAYAILRSIP--NKLGGVLALLLSILILAIMPIWHKSEMKGLEFYPFNKFLFWSLIGTV 332
Cdd:COG1290 269 NYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFF 348

                       330       340       350
                ....*....|....*....|....*....|...
gi 87083597 333 FILTWIGAKPveDPYVLVGQLFTAIYFSYFILA 365
Cdd:COG1290 349 IVLTILGANP--PIATLLGSINTVTYFAFFLIV 379
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 9-206 3.30e-88

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 264.62  E-value: 3.30e-88
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597   9 PLMKILNSAVVDLPAPSNISSWWNFGSLLGLCLVTQIFTGIFLAMHYTPHVEMAFSSVIHIIRDVNYGWLLRTIHANGAS 88
Cdd:cd00284   1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597  89 FFFICLYLHVGRGLYYGSY--LFLLTWFSGILLLLLTMAAAFMGYVLPWGQMSFWGATVITNLLSAIPYMGDMIVQWLWG 166
Cdd:cd00284  81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                       170       180       190       200
                ....*....|....*....|....*....|....*....|
gi 87083597 167 GFAVDNATLNRFFSFHFLIPFIIMGVVIIHLLFLHQTGSN 206
Cdd:cd00284 161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
CYTB MTH00046
cytochrome b; Validated
 10-357 7.59e-87

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 266.85  E-value: 7.59e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597   10 LMKILNSAVVDLPAPSNISSWWNFGSLLGLCLVTQIFTGIFLAMHYTPHVEMAFSSVIHIIRDVNYGWLLRTIHANGASF 89
Cdd:MTH00046   1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597   90 FFICLYLHVGRGLYYGSYLFLLTWFSGILLLLLTMAAAFMGYVLPWGQMSFWGATVITNLLSAIPYMGDMIVQWLWGGFA 169
Cdd:MTH00046  81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597  170 VDNATLNRFFSFHFLIPFIIMGVVIIHLLFLHQTGSNNPLGL-KSDSDKIPFHPYFTIKDLVGFLFMLSFLIILTLLAPN 248
Cdd:MTH00046 161 VTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSsNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPD 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597  249 LLGDPENFNPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALLLSILIlaimpIWHKSEMKGLEFYPFNKFLFWSL 328
Cdd:MTH00046 241 LVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGGLVLVLSFLFF-----LWVPTFNGSSVYSVWRQVNFWLI 315

                        330       340
                 ....*....|....*....|....*....
gi 87083597  329 IGTVFILTWIGAKPVEDPYVLVGQLFTAI 357
Cdd:MTH00046 316 VSLFFSLSYLGGCHPEYPYLLISQLFSVL 344
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
18-204 3.25e-78

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 238.82  E-value: 3.25e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597    18 VVDLPAPSNISSWWNFGSLLGLCLVTQIFTGIFLAMHYTPHVEMAFSSVIHIIRDVNYGWLLRTIHANGASFFFICLYLH 97
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597    98 VGRGLYYG--SYLFLLTWFSGILLLLLTMAAAFMGYVLPWGQMSFWGATVITNLLSAIPYMGDMIVQWLWGGFAVDNATL 175
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 87083597   176 NRFFSFHFLIPFIIMGVVIIHLLFLHQTG 204
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
88-253 2.28e-43

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 148.16  E-value: 2.28e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597    88 SFFFICLYLHVGRGLYYGSYLF--LLTWFSGILLLLLTMAAAFMGYVLPWGQMSFWGATVITNLLSAIPYMGDMIVQWLW 165
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKprELNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597   166 GGFAVDNATLNRFFSFHFLI-PFIIMGVVIIHLLFLHQTGSNNPLGLKSDSDKIPFHPYFTIKDLVGFLFMLSFLIILTL 244
Cdd:pfam13631  81 GGPFPGTATIPRFYALHILLlPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 87083597   245 LAPNLLGDP 253
Cdd:pfam13631 161 INPIWLGGP 169
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 207-354 3.89e-42

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 144.33  E-value: 3.89e-42
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597 207 NPLGLKSDSDKIPFHPYFTIKDLVGFLFMLSFLIILTLLAPNLLGDPENFNPANPLVTPVHIQPEWYFLFAYAILRSIPN 286
Cdd:cd00290   1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 87083597 287 KLGGVLALLLSILILAIMPIWHKSEMKGlEFYPFNKFLFWSLIGTVFILTWIGAKPVEDPYVLVGQLF 354
Cdd:cd00290  81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
PRK03735 PRK03735
cytochrome b6; Provisional
 33-209 1.66e-36

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 132.14  E-value: 1.66e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597   33 FGSLLGLCLVTQIFTGIFLAMHYTPHVEMAFSSVIHIIRDVNYGWLLRTIHANGASFFFICLYLHVGRGLYYGSYL--FL 110
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKkpRE 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597  111 LTWFSGILLLLLTMAAAFMGYVLPWGQMSFWGATVITNLLSAIPYMGDMIVQWLWGGFAVDNATLNRFFSFH-FLIPFII 189
Cdd:PRK03735 124 LNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203

                        170       180
                 ....*....|....*....|
gi 87083597  190 MGVVIIHLLFLHQTGSNNPL 209
Cdd:PRK03735 204 AVLMLAHFLMIRKQGISGPL 223
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
258-358 3.61e-33

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 119.12  E-value: 3.61e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597   258 PANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIMPIWHKSEMKGLEFYPFNKFLFWSLIGTVFILTW 337
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 87083597   338 IGAKPVEDPYVLVGQLFTAIY 358
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
petB CHL00070
cytochrome b6
 24-209 2.09e-31

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 118.28  E-value: 2.09e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597   24 PSNISSWWNFGSLLGLCLVTQIFTGIFLAMHYTPHVEMAFSSVIHIIRDVNYGWLLRTIHANGASFFFICLYLHVGRGLY 103
Cdd:CHL00070  27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083597  104 YGSYL--FLLTWFSGILLLLLTMAAAFMGYVLPWGQMSFWGATVITNLLSAIPYMGDMIVQWLWGGFAVDNATLNRFFSF 181
Cdd:CHL00070 107 TGGFKkpRELTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                        170       180
                 ....*....|....*....|....*....
gi 87083597  182 H-FLIPFIIMGVVIIHLLFLHQTGSNNPL 209
Cdd:CHL00070 187 HtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
petD CHL00058
cytochrome b6/f complex subunit IV
 242-291 1.57e-08

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 53.47  E-value: 1.57e-08
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 87083597  242 LTLLAPNLLGDPenfnpANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGV 291
Cdd:CHL00058  54 LAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGV 98
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 236-306 2.74e-08

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 52.87  E-value: 2.74e-08
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 87083597 236 LSFLIILTLLAPNLLGDPenfnpANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIMPI 306
Cdd:COG5679  49 IALCIGLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPF 114
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 236-291 1.26e-07

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 50.95  E-value: 1.26e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 87083597   236 LSFLIILTLLAPNLLGDPenfnpANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGV 291
Cdd:TIGR01156  48 IACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGV 98
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH