|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
1-318 |
4.11e-54 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 180.02 E-value: 4.11e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 1 MWLSPSLLLMIISIVTSICLVISSPSLFISWIGLELNTLAFLPLLLSKKSKLASEASIKYFLTQTLASVLILVGGL---W 77
Cdd:MTH00160 1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIIlnmL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 78 FLDLWGGLATLTLLLGLSIKLGAAPFHSWVLSIAEASGWVPLFALLTIQKINPLLMLWMFchLSMPFFYVVVLSSLIMGG 157
Cdd:MTH00160 81 NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL--INNNFIIIIIILSAIIGA 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 158 LAGLTQTSVRSILTFSSINHVGWLMTALSFSLSVGAYYFLIYLTTLLCSILIFHMFNVSHINQLPLLSFK-PSNQMLLFF 236
Cdd:MTH00160 159 IGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKsKKIKFLLFL 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 237 ALLSLGGLPPFLGFLPKWMILQLTVSYSLLLVGGVMISMSLVVLFFYLRLMFSAFMMGGVNLTTLSSDPLPFPVYFVALF 316
Cdd:MTH00160 239 NLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLILNFL 318
|
..
gi 87083586 317 SI 318
Cdd:MTH00160 319 SF 320
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
20-305 |
3.43e-18 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 84.78 E-value: 3.43e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 20 LVISSPSLFISWIGLELNTLAFLPLL-LSKKSKLASEASIKYFLTQTLASVLILVG---------------------GLW 77
Cdd:COG1007 117 LMASANDLLTLFLGLELLSLSLYVLVaFRRDDRRSSEAALKYFLLGALSSGFLLYGisllygatgslnlagiaaalaAGG 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 78 FLDLWGGLATLTLLLGLSIKLGAAPFHSWVLSIAEASGwVPLFALL-TIQKINPLLMLWMFCHLSMP--------FFYVV 148
Cdd:COG1007 197 ANSPLLLLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAP-TPVTAFLaTAPKIAAFAALLRLLVEAFPglaadwqlLLAVL 275
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 149 VLSSLIMGGLAGLTQTSVRSILTFSSINHVGWLMTAL----SFSLSVGAYYFLIYLTTLLCSILIF-----HMFNVSHIN 219
Cdd:COG1007 276 AVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLaagtPLGVSAALFYLLAYLFMNLGAFAVIlllsrKGGEAEEIE 355
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 220 QL-------PLLSFkpsnqmLLFFALLSLGGLPPFLGFLPKWMILQLTVSYSLLLVGGVMISMSLVVLFFYLRLMFSAFM 292
Cdd:COG1007 356 DLaglarrsPLLAL------AMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVKAMYF 429
|
330
....*....|...
gi 87083586 293 MGGVNLTTLSSDP 305
Cdd:COG1007 430 DEPEEEAPISAPP 442
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
24-267 |
6.23e-15 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 73.89 E-value: 6.23e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 24 SPSLFISWIGLELNTLAFLPLLLS-KKSKLASEASIKYFLTQTLASVLILVGGLWFL--------------------DLW 82
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLIGYwGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYnytgtlsfdelskaltgglnSSG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 83 GGLATLTLLLGLSIKLGAAPFHSWVLSIAEASGW-VPLFALLTIQKINPLLMLWMFCHLS------MPFFYVVVLSSLIM 155
Cdd:pfam00361 81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTpVSALLAATLVKAGGYGLIRRSLLYLpsspfiQQILLILAIISMLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 156 GGLAGLTQTSVRSILTFSSINHVGWLMTALSFSLSVGAYYFLIYLTT-LLCSILIFHMFNVSHINQLP---------LLS 225
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLThGLFSAGLFLCAGSVIYRRVHtrnirdyggLAK 240
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 87083586 226 FKPSNQMLLFFALLSLGGLPPFLGFLPKWMILQLTVSYSLLL 267
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIF 282
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
8-292 |
2.44e-13 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 70.36 E-value: 2.44e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 8 LLMIISIVtSICLVISSPSLFISWIGLELNTLAFLPLL-LSKKSKLASEASIKYFLTQTLASVLILVG------------ 74
Cdd:TIGR01770 106 ILLLFALL-GIFLLVSSNDLLSIYLGLELQSLCFYVLAgLKRKSRFSTEAGLKYFILGAFSSGLLLFGisliygftgsln 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 75 ---------GLWFLDLWGGLATLTLLLGLSIKLGAAPFHSWVLSIAEASGWVPLFALLTIQKINP--------LLMLWMF 137
Cdd:TIGR01770 185 fedlllflsNGMLNISLLLLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIfavflrlfLYILFGF 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 138 CHLSMPFFYVVVLSSLIMGGLAGLTQTSVRSILTFSSINHVGWLMTALSFSLSVGA----YYFLIYLTTLLCSILIF-HM 212
Cdd:TIGR01770 265 SEAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIkavlFYIFIYALMSLGAFGVLsLL 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 213 FNVSHINQLPLLSFK------PSNQMLLFFALLSLGGLPPFLGFLPKWMILQLTVSYSLLLVGGVMISMSLVVLFFYLRL 286
Cdd:TIGR01770 345 RSYKDEWIEYISDFAglfktnPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV 424
|
....*.
gi 87083586 287 MFSAFM 292
Cdd:TIGR01770 425 VKVMYF 430
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
1-318 |
4.11e-54 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 180.02 E-value: 4.11e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 1 MWLSPSLLLMIISIVTSICLVISSPSLFISWIGLELNTLAFLPLLLSKKSKLASEASIKYFLTQTLASVLILVGGL---W 77
Cdd:MTH00160 1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIIlnmL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 78 FLDLWGGLATLTLLLGLSIKLGAAPFHSWVLSIAEASGWVPLFALLTIQKINPLLMLWMFchLSMPFFYVVVLSSLIMGG 157
Cdd:MTH00160 81 NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL--INNNFIIIIIILSAIIGA 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 158 LAGLTQTSVRSILTFSSINHVGWLMTALSFSLSVGAYYFLIYLTTLLCSILIFHMFNVSHINQLPLLSFK-PSNQMLLFF 236
Cdd:MTH00160 159 IGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKsKKIKFLLFL 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 237 ALLSLGGLPPFLGFLPKWMILQLTVSYSLLLVGGVMISMSLVVLFFYLRLMFSAFMMGGVNLTTLSSDPLPFPVYFVALF 316
Cdd:MTH00160 239 NLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLILNFL 318
|
..
gi 87083586 317 SI 318
Cdd:MTH00160 319 SF 320
|
|
| ND2 |
MTH00112 |
NADH dehydrogenase subunit 2; Provisional |
6-292 |
1.90e-47 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214423 [Multi-domain] Cd Length: 346 Bit Score: 163.07 E-value: 1.90e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 6 SLLLMIISIVTSICLVISSPSLFISWIGLELNTLAFLPLLLSKKSKLASEASIKYFLTQTLASVLILVGGL---WFLDLW 82
Cdd:MTH00112 5 AKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTtnaWNTGQW 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 83 ------GGLATLTLLLGLSIKLGAAPFHSWVLSIAEASGWVPLFALLTIQKINPLLMLWMFCH-LSMPFFYVVVLSSLIM 155
Cdd:MTH00112 85 ditqltNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNsLNPTLLLTLAILSTLI 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 156 GGLAGLTQTSVRSILTFSSINHVGWLMTALSFSLSVGAYYFLIYLTTLLCSILIFHMFNVSHINQLPLLSFK-PSNQMLL 234
Cdd:MTH00112 165 GGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKsPTLNTTL 244
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 87083586 235 FFALLSLGGLPPFLGFLPKWMILQLTVSYSLLLVGGVMISMSLVVLFFYLRLMFSAFM 292
Cdd:MTH00112 245 MLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTI 302
|
|
| ND2 |
MTH00105 |
NADH dehydrogenase subunit 2; Provisional |
7-289 |
3.63e-46 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177167 [Multi-domain] Cd Length: 347 Bit Score: 159.63 E-value: 3.63e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 7 LLLMIISIVTSICLVISSPSLFISWIGLELNTLAFLPLLLSKKSKLASEASIKYFLTQTLASVLILVG---GLWFLDLWG 83
Cdd:MTH00105 6 LIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAiiiNLMYSGQWT 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 84 G------LATLTLLLGLSIKLGAAPFHSWVLSIAEASGWVPLFALLTIQKINPL-LMLWMFCHLSMPFFYVVVLSSLIMG 156
Cdd:MTH00105 86 ItkltnpTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLsILYQISPSINPNLLLTLAILSILIG 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 157 GLAGLTQTSVRSILTFSSINHVGWLMTALSFSLSVGAYYFLIYLTTLLCSILIFHMFNVSHINQLPLLSFK-PSNQMLLF 235
Cdd:MTH00105 166 GWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKtPLMTSLIL 245
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 87083586 236 FALLSLGGLPPFLGFLPKWMILQLTVSYSLLLVGGVMISMSLVVLFFYLRLMFS 289
Cdd:MTH00105 246 LTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYS 299
|
|
| ND2 |
MTH00144 |
NADH dehydrogenase subunit 2; Provisional |
4-318 |
7.56e-44 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214432 [Multi-domain] Cd Length: 328 Bit Score: 153.12 E-value: 7.56e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 4 SPSLLLMIISIVTSICLVISSPSLFISWIGLELNTLAFLPLLLSKKSKLASEASIKYFLTQTLASVLILVGGLW-FLDLW 82
Cdd:MTH00144 3 SPSNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLImYNLSF 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 83 GGLATLTLLLGLSIKLGAAPFHSWVLSIAEASGWVPLFALLTIQKINPLLMLWMFCHLSMPFFYVVVLS--SLIMGGLAG 160
Cdd:MTH00144 83 SWFSMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLAYLLCVISvlSALVGSIGG 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 161 LTQTSVRSILTFSSINHVGWLMTALSFSLSVGAYYFLIYLTTLLCSILIFHMFNVSHINQLPLLSFKPSNQMLLFFALLS 240
Cdd:MTH00144 163 LNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSLKPSYKTGLSIISLLLS 242
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 87083586 241 LGGLPPFLGFLPKWMILQLTVSYSLLLVGGVMISMSLVVLFFYLRLMFSAFMMGGVNLTTLSSDPLPFPVYFVALFSI 318
Cdd:MTH00144 243 LGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKVLNSSIISLNLLGG 320
|
|
| ND2 |
MTH00041 |
NADH dehydrogenase subunit 2; Validated |
7-292 |
2.07e-42 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 177116 [Multi-domain] Cd Length: 349 Bit Score: 150.08 E-value: 2.07e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 7 LLLMIISIVTSICLVISSPSLFISWIGLELNTLAFLPLLLSKKSKLASEASIKYFLTQTLASVLILVGGL---WFLDLWG 83
Cdd:MTH00041 6 LIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALiqaWLSGSWS 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 84 ------GLATLTLLLGLSIKLGAAPFHSWVLSIAEASGWVPLFALLTIQKINPLLMLWMFCHLSMPFFYVVV-LSSLIMG 156
Cdd:MTH00041 86 ingplnTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCgILSVLVG 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 157 GLAGLTQTSVRSILTFSSINHVGWLMTALSFSLSVGAYYFLIYLTTLLCSILIFHMFNVSHINQLPLLS-FKPSNQMLLF 235
Cdd:MTH00041 166 GWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSqLNPISAFLFI 245
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 87083586 236 FALLSLGGLPPFLGFLPKWMILQLTVSYSLLLVGGVMISMSLVVLFFYLRLMFSAFM 292
Cdd:MTH00041 246 LSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSL 302
|
|
| ND2 |
MTH00200 |
NADH dehydrogenase subunit 2; Provisional |
7-303 |
9.54e-41 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177246 [Multi-domain] Cd Length: 347 Bit Score: 145.50 E-value: 9.54e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 7 LLLMIISIVTSICLVISSPSLFISWIGLELNTLAFLPLLLSKKSKLASEASIKYFLTQTLASVLILVGGLWFL------- 79
Cdd:MTH00200 6 LPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAwtsgqwg 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 80 --DLWGGLATLTLLLGLSIKLGAAPFHSWVLSIAEASGWVPLFALLTIQKINPLLMLWMF-CHLSMPFFYVVVLSSLIMG 156
Cdd:MTH00200 86 isEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLaPALNSNILLLLGLLSVLVG 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 157 GLAGLTQTSVRSILTFSSINHVGWLMTALSFSLSVGAYYFLIYLTTLLCSILIFHMFNVSHINQLPL-LSFKPSNQMLLF 235
Cdd:MTH00200 166 GWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSsKTKNPILSMLLG 245
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 87083586 236 FALLSLGGLPPFLGFLPKWMILQLTVSYSLLLVGGVMISMSLVVLFFYLRLMFSAFMMGGVNLTTLSS 303
Cdd:MTH00200 246 LTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMS 313
|
|
| ND2 |
MTH00070 |
NADH dehydrogenase subunit 2; Provisional |
7-289 |
2.96e-40 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177142 [Multi-domain] Cd Length: 346 Bit Score: 144.29 E-value: 2.96e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 7 LLLMIISIVTSICLVISSPSLFISWIGLELNTLAFLPLLLSKKSKLASEASIKYFLTQTLASVLILVGGL---WFLDLW- 82
Cdd:MTH00070 6 LSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTinaWFTGEWt 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 83 -----GGLATLTLLLGLSIKLGAAPFHSWVLSIAEASGWVPLFALLTIQKINPLLMLWMFCH-LSMPFFYVVVLSSLIMG 156
Cdd:MTH00070 86 imnmqTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHlLNSNLLIIMGLLSTLIG 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 157 GLAGLTQTSVRSILTFSSINHVGWLMTALSFSLSVGAYYFLIYLTTLLCSILIFHMFNVSHINQLPLLSFK-PSNQMLLF 235
Cdd:MTH00070 166 GWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKnPTLTSMMM 245
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 87083586 236 FALLSLGGLPPFLGFLPKWMILQLTVSYSLLLVGGVMISMSLVVLFFYLRLMFS 289
Cdd:MTH00070 246 LTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYA 299
|
|
| ND2 |
MTH00011 |
NADH dehydrogenase subunit 2; Validated |
4-293 |
7.21e-37 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 164587 [Multi-domain] Cd Length: 330 Bit Score: 134.91 E-value: 7.21e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 4 SPSLLLMIISIVTSICLVISSPSLFISWIGLELNTLAFLPLLLSKKSKLASEASIKYFLTQTLASVLILVGGL---WFLD 80
Cdd:MTH00011 5 FPTMFLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTmmwSFPS 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 81 LWGGLATLTLLLGLSIKLGAAPFHSWVLSIAEASGWVPLFALLTIQKINPLLMLWMFCHLS-MPFFYVVVLSSLIMGGLA 159
Cdd:MTH00011 85 LLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNiLPMMTSMAAMSALAGGLG 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 160 GLTQTSVRSILTFSSINHVGWLMTALSFSLSVGAYYFLIYLTTLLCSILIFHMFNVSHINQLPLLS-FKPSNQMLLFFAL 238
Cdd:MTH00011 165 GMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISsMSQTTSMSLFIML 244
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 87083586 239 LSLGGLPPFLGFLPKWMILQLTVSYSLLLVGGVMISMSLVVLFFYLRLMFSAFMM 293
Cdd:MTH00011 245 LSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNFMYL 299
|
|
| ND2 |
MTH00197 |
NADH dehydrogenase subunit 2; Provisional |
9-318 |
2.37e-36 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177244 [Multi-domain] Cd Length: 323 Bit Score: 133.26 E-value: 2.37e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 9 LMIISIVTSICLVISSPSLFISWIGLELNTLAFLPLLLSKKSKLASEASIKYFLTQTLASVLILVGG-LWFLDLWGGLAT 87
Cdd:MTH00197 2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGsLSFSNLYLSLLS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 88 LTLLLG-LSIKLGAAPFHSWVLSIAEASGWVPLFALLTIQKINPLLMLWMFCHLSMPFFYVVVLSSLImGGLAGLTQTSV 166
Cdd:MTH00197 82 VVLVILgLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSSSFMGLLICSVLSSLI-GGIGGMNQSNI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 167 RSILTFSSINHVGWLMTALSFSLSVGAYYFLIYLTTLLCSILIFHMFNVSHINQLPLLSFKPS-NQMLLFFALLSLGGLP 245
Cdd:MTH00197 161 RQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSsNLVFLGLSFLSLGGLP 240
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 87083586 246 PFLGFLPKWMILQLTVSYSLLLVGGVMISMSLVVLFFYLRLMFSAFMMGGVNLTTLSSDPLPFPVYFVALFSI 318
Cdd:MTH00197 241 PLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMINFLMKINLLYSGLFILLMMM 313
|
|
| ND2 |
MTH00135 |
NADH dehydrogenase subunit 2; Provisional |
28-286 |
5.78e-34 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177193 [Multi-domain] Cd Length: 347 Bit Score: 127.23 E-value: 5.78e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 28 FISWIGLELNTLAFLPLLLSKKSKLASEASIKYFLTQTLASVLILVGGL---WFLDLWGG------LATLTLLLGLSIKL 98
Cdd:MTH00135 27 LLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTtnaWLTGQWDIqqmshpLPTTMITLALALKI 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 99 GAAPFHSWVLSIAEA---------SGWVPL--FALLT-IQKINPLLMLWMfchlsmpffyvvVLSSLIMGGLAGLTQTSV 166
Cdd:MTH00135 107 GLAPLHFWLPEVLQGldlttglilSTWQKLapFALILqIAPTNPTLLITL------------GLTSTLVGGWGGLNQTQL 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 167 RSILTFSSINHVGWLMTALSFSLSVGAYYFLIYLTTLLCSILIFHMFNVSHINQLPLLSFK-PSNQMLLFFALLSLGGLP 245
Cdd:MTH00135 175 RKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKaPALTALTPLILLSLGGLP 254
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 87083586 246 PFLGFLPKWMILQLTVSYSLLLVGGVMISMSLVVLFFYLRL 286
Cdd:MTH00135 255 PLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRL 295
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
20-305 |
3.43e-18 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 84.78 E-value: 3.43e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 20 LVISSPSLFISWIGLELNTLAFLPLL-LSKKSKLASEASIKYFLTQTLASVLILVG---------------------GLW 77
Cdd:COG1007 117 LMASANDLLTLFLGLELLSLSLYVLVaFRRDDRRSSEAALKYFLLGALSSGFLLYGisllygatgslnlagiaaalaAGG 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 78 FLDLWGGLATLTLLLGLSIKLGAAPFHSWVLSIAEASGwVPLFALL-TIQKINPLLMLWMFCHLSMP--------FFYVV 148
Cdd:COG1007 197 ANSPLLLLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAP-TPVTAFLaTAPKIAAFAALLRLLVEAFPglaadwqlLLAVL 275
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 149 VLSSLIMGGLAGLTQTSVRSILTFSSINHVGWLMTAL----SFSLSVGAYYFLIYLTTLLCSILIF-----HMFNVSHIN 219
Cdd:COG1007 276 AVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLaagtPLGVSAALFYLLAYLFMNLGAFAVIlllsrKGGEAEEIE 355
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 220 QL-------PLLSFkpsnqmLLFFALLSLGGLPPFLGFLPKWMILQLTVSYSLLLVGGVMISMSLVVLFFYLRLMFSAFM 292
Cdd:COG1007 356 DLaglarrsPLLAL------AMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVKAMYF 429
|
330
....*....|...
gi 87083586 293 MGGVNLTTLSSDP 305
Cdd:COG1007 430 DEPEEEAPISAPP 442
|
|
| ND2 |
MTH00196 |
NADH dehydrogenase subunit 2; Provisional |
14-286 |
2.18e-15 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214453 [Multi-domain] Cd Length: 365 Bit Score: 75.84 E-value: 2.18e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 14 IVTSICLVISSPSLFISWIGLELNTLAFLPLLLSKK-SKLASEASIKYFLTQTLASVLILVG------------------ 74
Cdd:MTH00196 2 VALGILCLISSSNWLSVYLAIELQTLSLFILIAQNRgSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlsyinl 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 75 ----GLWFLDLWGGLATLTLLLGLSIKLGAAPFHSWVLSIAEASGWVPLFALLTIQKINPLLMLWMFcHLSMPFFYVVVL 150
Cdd:MTH00196 82 vlnsGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSI-GLNVNILLIGGL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 151 SSLIMGGLAGLTQTSVRSILTFSSINHVGWLMTALSF----SLSVGAYYFLIYLTTLLC--SILIFHMFNVSHINQLPLL 224
Cdd:MTH00196 161 FSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIgsfeSIQASLVYLFIYIIMSICvfSIILALNVYKNLIIEFSGL 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 87083586 225 S-FKPSNQMLLFFALLSLGGLPPFLGFLPKWMILQLTVSYSLLLVGGVMISMSLVVLFFYLRL 286
Cdd:MTH00196 241 SrRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
24-267 |
6.23e-15 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 73.89 E-value: 6.23e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 24 SPSLFISWIGLELNTLAFLPLLLS-KKSKLASEASIKYFLTQTLASVLILVGGLWFL--------------------DLW 82
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLIGYwGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYnytgtlsfdelskaltgglnSSG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 83 GGLATLTLLLGLSIKLGAAPFHSWVLSIAEASGW-VPLFALLTIQKINPLLMLWMFCHLS------MPFFYVVVLSSLIM 155
Cdd:pfam00361 81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTpVSALLAATLVKAGGYGLIRRSLLYLpsspfiQQILLILAIISMLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 156 GGLAGLTQTSVRSILTFSSINHVGWLMTALSFSLSVGAYYFLIYLTT-LLCSILIFHMFNVSHINQLP---------LLS 225
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLThGLFSAGLFLCAGSVIYRRVHtrnirdyggLAK 240
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 87083586 226 FKPSNQMLLFFALLSLGGLPPFLGFLPKWMILQLTVSYSLLL 267
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIF 282
|
|
| PRK05777 |
PRK05777 |
NADH-quinone oxidoreductase subunit NuoN; |
8-292 |
1.22e-14 |
|
NADH-quinone oxidoreductase subunit NuoN;
Pssm-ID: 235603 [Multi-domain] Cd Length: 476 Bit Score: 74.09 E-value: 1.22e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 8 LLMIISIVtSICLVISSPSLFISWIGLELNTLA-FLPLLLSKKSKLASEASIKYFLTQTLASVLIL---------VGGLW 77
Cdd:PRK05777 107 LLVLFALL-GMMVMVSANDLLTLFLGLELLSLPlYALAALRRDRRRSLEAAIKYFVLGALASGFLLygmsllygaTGSLS 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 78 FLDLWGGLATLTLLLGLSI------------KLGAAPFHSWVLSIAE-ASGWVPLFaLLTIQKINPLLMLWMFCHLSMP- 143
Cdd:PRK05777 186 FAGIAKALADGSGNSLLLLfglvfllvglafKLSAVPFHMWTPDVYEgAPTPVTAF-LATAPKIAAFAVLLRLLVVAFGg 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 144 -------FFYVVVLSSLIMGGLAGLTQTSVRSILTFSSINHVGWLMTAL----SFSLSVGAYYFLIYLTTLLCSILIFHM 212
Cdd:PRK05777 265 lsedwqqVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLaagtAEGYSAVLFYLLAYLFMTLGAFGVISL 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 213 -----FNVSHINQL-------PLLSFkpsnqMLLFFaLLSLGGLPPFLGFLPKWMILQLTVSYSLLLVGGVMISMSLVVL 280
Cdd:PRK05777 345 lrrkgGEAESISDFaglskrsPLLAA-----VMTIF-MLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGA 418
|
330
....*....|..
gi 87083586 281 FFYLRLMFSAFM 292
Cdd:PRK05777 419 FYYLRVIKLMYF 430
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
8-292 |
2.44e-13 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 70.36 E-value: 2.44e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 8 LLMIISIVtSICLVISSPSLFISWIGLELNTLAFLPLL-LSKKSKLASEASIKYFLTQTLASVLILVG------------ 74
Cdd:TIGR01770 106 ILLLFALL-GIFLLVSSNDLLSIYLGLELQSLCFYVLAgLKRKSRFSTEAGLKYFILGAFSSGLLLFGisliygftgsln 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 75 ---------GLWFLDLWGGLATLTLLLGLSIKLGAAPFHSWVLSIAEASGWVPLFALLTIQKINP--------LLMLWMF 137
Cdd:TIGR01770 185 fedlllflsNGMLNISLLLLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIfavflrlfLYILFGF 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 138 CHLSMPFFYVVVLSSLIMGGLAGLTQTSVRSILTFSSINHVGWLMTALSFSLSVGA----YYFLIYLTTLLCSILIF-HM 212
Cdd:TIGR01770 265 SEAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIkavlFYIFIYALMSLGAFGVLsLL 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 213 FNVSHINQLPLLSFK------PSNQMLLFFALLSLGGLPPFLGFLPKWMILQLTVSYSLLLVGGVMISMSLVVLFFYLRL 286
Cdd:TIGR01770 345 RSYKDEWIEYISDFAglfktnPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV 424
|
....*.
gi 87083586 287 MFSAFM 292
Cdd:TIGR01770 425 VKVMYF 430
|
|
| HyfB |
COG0651 |
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ... |
15-290 |
1.28e-11 |
|
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 440416 [Multi-domain] Cd Length: 430 Bit Score: 65.17 E-value: 1.28e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 15 VTSICLVISSPSLFISWIGLELNTLAFLPLLLSKKSKLASEASIKYFLTQTLASVLILV---------GGLWFLDL---- 81
Cdd:COG0651 117 LAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLgvgllygatGTLNMADLaarl 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 82 ------WGGLATLTLLLGLSIKLGAAPFHSWvLSIAEASGWVPLFALL----------TIQKINPLLMLWMFCHLSMPFF 145
Cdd:COG0651 197 aeldpgLLLAAFALLLVGFGIKAALFPLHFW-LPDAYPAAPSPVSALLsglltkvgvyAILRVLTLLFGADPALFLGTLL 275
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 146 YVVVLSSLIMGGLAGLTQTSVRSILTFSSINHVGWLMTALSFSLSVGAYYFLIYL-------TTL-LCSILIFHMFNVSH 217
Cdd:COG0651 276 LVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLlnhalakALLfLAAGAIERATGTRD 355
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 87083586 218 INQLP-LLSFKPSNQMLLFFALLSLGGLPPFLGFLPKWMILQLTVSYSLLLVGGVMISMSLVVLFFYLRLMFSA 290
Cdd:COG0651 356 LDKLGgLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRIFGRA 429
|
|
| ND2 |
MTH00199 |
NADH dehydrogenase subunit 2; Provisional |
6-286 |
4.35e-10 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177245 [Multi-domain] Cd Length: 460 Bit Score: 60.42 E-value: 4.35e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 6 SLLLMIISIVTSICLViSSPSLFISWIGLELNTLA-FLPLLLSKKSKLASEASIKYFLTQTLASVLILVGGLWFLDLWGG 84
Cdd:MTH00199 99 SPILILIVALGSLLLV-SSINWLSIYLAIELQTLTlFILVALKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGE 177
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 85 LATLTLLLGLSI-------------KLGAAPFHSWVLSIAEASGWVPLFALLTIQKINPLLMLWMFCHLSMPFFYVVVLS 151
Cdd:MTH00199 178 TSIQGINSILTGdvgkilitisllfKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLICAVLS 257
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 152 sLIMGGLAGLTQTSVRSILTFSSINHVGWLMTALSF----SLSVGAYYFLIYLTTLLCSILIFHMFNVSH--INQLPLLS 225
Cdd:MTH00199 258 -IIYGAIGALNQTKIKRLLAYSGIGHMGFILFGVAIgsfeSIQASLIYMIIYVIMSICSFSIILSLKLTKglIVEVSGLS 336
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 87083586 226 FK-PSNQMLLFFALLSLGGLPPFLGFLPKWMILQLTVSYSLLLVGGVMISMSLVVLFFYLRL 286
Cdd:MTH00199 337 RKnPVIALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
|
|
| ND2 |
MTH00198 |
NADH dehydrogenase subunit 2; Provisional |
97-289 |
7.55e-09 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214454 [Multi-domain] Cd Length: 607 Bit Score: 56.79 E-value: 7.55e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 97 KLGAAPFHSWVLSIAEASGwVPLFALLTIQKINPLLMLWMFCHLSMPFFYVVVLSSLIMGGLAGLTQTSVRSILTFSSIN 176
Cdd:MTH00198 312 KLAAAPFHMWTPDVYEGAP-TPTTALIAIIPKFTVYILLTSLVITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIG 390
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 177 HVGWLMTALSF----SLSVGAYYFLIYLTTLLCSILIFHMF------------------NVSHINQLPLLSFKPSNQMLL 234
Cdd:MTH00198 391 HIGFILIGVSAgtyeSLQASWTYAVTYLVSALASFTVICTLeefgtrtptsrqrdgsfgNYNLVRRLVDLTILSRGQPYI 470
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 87083586 235 FFAL----LSLGGLPPFLGFLPKWMIlqltvsysllLVGGVMISMSLVVLFFYLRLMFS 289
Cdd:MTH00198 471 AFSLaivfLSLAGIPPLLGFLGKWFI----------LVGSIKIAFSSSLSIYYLVALFA 519
|
|
| ndhB |
CHL00049 |
NADH dehydrogenase subunit 2 |
97-286 |
2.47e-07 |
|
NADH dehydrogenase subunit 2
Pssm-ID: 176990 [Multi-domain] Cd Length: 494 Bit Score: 51.93 E-value: 2.47e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 97 KLGAAPFHSWVLSIAEASGwVPLFALLTI-QKINPLLMLWMFCHLSMPF--------FYVVVLSSLIMGGLAGLTQTSVR 167
Cdd:CHL00049 227 KLSLAPFHQWTPDVYEGSP-TPVVAFLSVtSKVAASALATRIFDIPFYFssnewhllLEILAILSMILGNLIAITQTSMK 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 168 SILTFSSINHVGWLMTALSFSLSVGAY-----YFLIY----LTTLLCSILIFHMFNVSHIN-------QLPLLSFKPSnq 231
Cdd:CHL00049 306 RMLAYSSIGQIGYVIIGIIVGDSNDGYasmitYMLFYifmnLGTFACIVLFGLRTGTDNIRdyaglytKDPFLALSLA-- 383
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 87083586 232 mllfFALLSLGGLPPFLGFLPK----WMILQlTVSYSLLLVGgvmISMSLVVLFFYLRL 286
Cdd:CHL00049 384 ----LCLLSLGGIPPLAGFFGKlylfWCGWQ-AGLYFLVSIG---LLTSVISIYYYLKI 434
|
|
| PRK08375 |
PRK08375 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
147-292 |
3.68e-07 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236251 [Multi-domain] Cd Length: 487 Bit Score: 51.42 E-value: 3.68e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 147 VVVLSSLIMGGLAGLTQTSVRSILTFSSINHVGWLMTALSFSLSVGAYYFLIYL--------TTLLCSILIFHMFNVSHI 218
Cdd:PRK08375 276 VLALLSMLVGSLAALGQDDVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLlhhalmkgALFLAAGAIEVTYGTRRL 355
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 87083586 219 NQLPLLSFKPSNQMLLFFAL-LSLGGLPPFLGFLPKWMILQLTVSYSLLLVGGVMISMSLVVLFFYLRLMFSAFM 292
Cdd:PRK08375 356 SELSGLGRRMPLTAAAFAVAsLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWYRAFF 430
|
|
| PRK02504 |
PRK02504 |
NAD(P)H-quinone oxidoreductase subunit N; |
95-285 |
6.97e-05 |
|
NAD(P)H-quinone oxidoreductase subunit N;
Pssm-ID: 235044 [Multi-domain] Cd Length: 513 Bit Score: 44.27 E-value: 6.97e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 95 SIKLGAAPFHSWVLSIAEASGwVPLFALLTI---------------QKINPLLMLWMFchlsmpFFYVVVLSSLIMGGLA 159
Cdd:PRK02504 221 AFKISAVPFHQWTPDVYEGSP-TPVVAFLSVgskaagfalairllvTAFPSFDEQWKL------LFTALAILSMVLGNVV 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 160 GLTQTSVRSILTFSSINHVGWLMTALSFSLSVG----AYYFLIYLTTLLCSILIFHMFNV----SHINQLPLLSFK-PSN 230
Cdd:PRK02504 294 ALAQTSMKRMLAYSSIGQAGFVMIGLVAGTEAGyasmVFYLLAYLFMNLGAFACVILFSLrtgtDQISDYAGLYQKdPLL 373
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 87083586 231 QMLLFFALLSLGGLPPFLGFLPKWMILQLTVS---YSLLLVGGVmisMSLVVLFFYLR 285
Cdd:PRK02504 374 TLGLSLCLLSLGGIPPLAGFFGKIYLFWAGWQaglYLLVLVGLV---TSVISIYYYIR 428
|
|
| PRK12665 |
PRK12665 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
147-291 |
1.05e-04 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 237165 [Multi-domain] Cd Length: 521 Bit Score: 43.80 E-value: 1.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 147 VVVLSSLIMGGLAGLTQTSVRSILTFSSINHVGWLMTALSFSLSVG--------AYYFLIYLTTLLCSILIFHMFNVSHI 218
Cdd:PRK12665 278 VVALLTMVVGILGAIAQSDIKRLLSFTLVSHIGYMVFGIALSTVAGlsgaiyyvAHHITVQTTLFLVVGLIERQAGSSSL 357
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 87083586 219 NQLP-LLSFKPSNQMLLFFALLSLGGLPPFLGFLPKWMILQLTVS----YSLLLVGGVMISmSLVVLFFYLRLMFSAF 291
Cdd:PRK12665 358 RRLGgLAKASPLLAVLFFVPALNLGGIPPFSGFIGKVALLEAGAEdgtwLAWALVAGGVVT-SLLTLYAVARVWTKAF 434
|
|
| PRK08376 |
PRK08376 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
27-292 |
1.20e-03 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236252 [Multi-domain] Cd Length: 521 Bit Score: 40.47 E-value: 1.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 27 LFISWIGLELNTLAFLPLLLSKKSK-LASEASIKYFLTQTLASVLILVG-GLWF------------------LDLWGGLA 86
Cdd:PRK08376 143 LFNFFVFLEIMSIASYALVAFRNDTwEAIEAGIKYMFVGSLASSMVLLGiALLYgqygtlnmaylavkmsenPTVVAKIA 222
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 87 TLTLLLGLSIKLGAAPFHSWVlsiAEASGWVP--LFALLTIQKINPLLMLWMFC------HLSMPF--FYVVVLS--SLI 154
Cdd:PRK08376 223 LALFIAGLAMKSGAVPVHMWL---PDAYPAAPssISAMLLVIKQAGLYALARVLfsiygpAINLATvgWVIIILGclTMF 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 155 MGGLAGLTQTSVRSILTFSSINHVGWLMTALSFSLSV---------------GAYYFLIYLTT-----LLCSILIFHMFN 214
Cdd:PRK08376 300 VGVAMAVVQKDVKRLLAYHSVSQIGYMLLGLGVGLAAlgdpamasygeialaGGIYHIVNHALykallFLTAGAVIYETG 379
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 87083586 215 VSHINQLPLLSFKPSNQMLLFF-ALLSLGGLPPFLGFLPKWMILQLTVSYSLLLVGGVMISmSLVVLFFYLRLMFSAFM 292
Cdd:PRK08376 380 TRNLNELGGLARTMPKTTIAFLiGAAAIVGLPPFNGFASKWLIYESSALFNPILGVIAMIG-SVLTLASFVKVFHTAFF 457
|
|
| PRK06277 |
PRK06277 |
energy conserving hydrogenase EhbF; |
131-292 |
2.09e-03 |
|
energy conserving hydrogenase EhbF;
Pssm-ID: 235767 [Multi-domain] Cd Length: 478 Bit Score: 39.63 E-value: 2.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 131 LLMLWMFCHLS-MPFFYVVVLS----SLIMGGLAGLTQTSVRSILTFSSINHVGWLMT--ALSFSLSVGAYYF-----LI 198
Cdd:PRK06277 250 LVIFKLFGGLSyFPSAQGVLIAlsvlAMVFGVVMALLQTDYKRLLAYHAISQGGYVAAglALGTPLGIVAGIFhainhVI 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 199 YLTTL-LCSILIFHMFNVSHINQLP-LLSFKPSNQMLLFFALLSLGGLPPFLGFLPKWMILQLTVSYSLLLVGGVMISMS 276
Cdd:PRK06277 330 YKSALfLGAGIVSYRTKTSNLRKLGgLLPVMPVVAFMVLCAKLAISGVPPFNGFQSKLMLAQAAMQANMPELAIIMIIVS 409
|
170
....*....|....*.
gi 87083586 277 LVVLFFYLRLMFSAFM 292
Cdd:PRK06277 410 IGTFVSMMKAFYLIYL 425
|
|
| PRK07691 |
PRK07691 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
147-291 |
5.36e-03 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 181085 [Multi-domain] Cd Length: 496 Bit Score: 38.39 E-value: 5.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 147 VVVLSSLIMGGLAGLTQTSVRSILTFSSINHVGWLMTALSFSLS---VGAYYFLIY--LTTLLCSILIFHMFNVSHINQL 221
Cdd:PRK07691 280 ILALLTIIFGVIGAVAYFDIKKIIIYNIMIAVGVILVGVAMMTEsgmIGAIYYLIHdmIVKAALFLLIGIMIKITGTTDL 359
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 87083586 222 P----LLSFKPSNQMLLFFALLSLGGLPPFLGFLPKWMILQLTVSYSLLLVGGVMISMSLVVLFFYLRLMFSAF 291
Cdd:PRK07691 360 KkmggLIKRYPVLGWMFFIAALSLAGIPPLSGFYGKFFIVEGTFEAGFYVSGIIVLLSSLLVLYSVIKIFLKGF 433
|
|
| PRK08668 |
PRK08668 |
NADH dehydrogenase subunit M; Validated |
152-272 |
7.70e-03 |
|
NADH dehydrogenase subunit M; Validated
Pssm-ID: 236332 [Multi-domain] Cd Length: 610 Bit Score: 38.05 E-value: 7.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083586 152 SLIMGGLAGLTQTSVRSILTFSSINHVGWLMTALSF--SLSVGAYYFLIyLTTLLCSILIFHMF-------NVSHINQLP 222
Cdd:PRK08668 282 SIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLgtSLGFAGGLFHV-FNHALFKGLFFLIFaaviyrtGTTKISEMG 360
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 87083586 223 LLSFK-PSNQMLLFFALLSLGGLPPFLGFLPKWMILQLTVSYSLLLVGGVM 272
Cdd:PRK08668 361 GLIEKmPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMA 411
|
|
| |
