|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
1-318 |
2.87e-53 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 177.71 E-value: 2.87e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 1 MWLSPSLLLMIISIVTSICLVISSPSLFISWIGLELNTLAFLPLLLSKKSKLASEASIKYFLTQTLASVLILVGGL---W 77
Cdd:MTH00160 1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIIlnmL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 78 FLASWGGLATLTLLLGLSIKLGAAPFHSWVLSIAEASGWVPLFALLTIQKINPLLMLWMFchLSMPFFYVVVLSSLIMGG 157
Cdd:MTH00160 81 NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL--INNNFIIIIIILSAIIGA 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 158 LAGLTQTSVRSILTFSSINHVGWLMTALSFSLSVGAYYFLIYLTTLLCSILIFHMFNVSHINQLPLLSFK-PSNQMLLFF 236
Cdd:MTH00160 159 IGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKsKKIKFLLFL 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 237 ALLSLGGLPPFLGFLPKWMILQLTVSYSLLLVGGAMISMSLVVLFFYLRLMFSAFMMGGVNLTTLSSDPLPFPVYFIALF 316
Cdd:MTH00160 239 NLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLILNFL 318
|
..
gi 87083572 317 SI 318
Cdd:MTH00160 319 SF 320
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
20-305 |
3.26e-17 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 82.09 E-value: 3.26e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 20 LVISSPSLFISWIGLELNTLAFLPLL-LSKKSKLASEASIKYFLTQTLASVLILVG---------------------GLW 77
Cdd:COG1007 117 LMASANDLLTLFLGLELLSLSLYVLVaFRRDDRRSSEAALKYFLLGALSSGFLLYGisllygatgslnlagiaaalaAGG 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 78 FLASWGGLATLTLLLGLSIKLGAAPFHSWVLSIAEASGwVPLFALL-TIQKINPLLMLWMFCHLSMP--------FFYVV 148
Cdd:COG1007 197 ANSPLLLLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAP-TPVTAFLaTAPKIAAFAALLRLLVEAFPglaadwqlLLAVL 275
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 149 VLSSLIMGGLAGLTQTSVRSILTFSSINHVGWLMTAL----SFSLSVGAYYFLIYLTTLLCSILIF-----HMFNVSHIN 219
Cdd:COG1007 276 AVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLaagtPLGVSAALFYLLAYLFMNLGAFAVIlllsrKGGEAEEIE 355
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 220 QL-------PLLSFkpsnqmLLFFALLSLGGLPPFLGFLPKWMILQLTVSYSLLLVGGAMISMSLVVLFFYLRLMFSAFM 292
Cdd:COG1007 356 DLaglarrsPLLAL------AMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVKAMYF 429
|
330
....*....|...
gi 87083572 293 MGGVNLTTLSSDP 305
Cdd:COG1007 430 DEPEEEAPISAPP 442
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
24-267 |
6.79e-15 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 73.89 E-value: 6.79e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 24 SPSLFISWIGLELNTLAFLPLLLS-KKSKLASEASIKYFLTQTLASVLILVGGLWFLA--------------------SW 82
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLIGYwGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNytgtlsfdelskaltgglnsSG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 83 GGLATLTLLLGLSIKLGAAPFHSWVLSIAEASGW-VPLFALLTIQKINPLLMLWMFCHLS------MPFFYVVVLSSLIM 155
Cdd:pfam00361 81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTpVSALLAATLVKAGGYGLIRRSLLYLpsspfiQQILLILAIISMLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 156 GGLAGLTQTSVRSILTFSSINHVGWLMTALSFSLSVGAYYFLIYLTT-LLCSILIFHMFNVSHINQLP---------LLS 225
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLThGLFSAGLFLCAGSVIYRRVHtrnirdyggLAK 240
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 87083572 226 FKPSNQMLLFFALLSLGGLPPFLGFLPKWMILQLTVSYSLLL 267
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIF 282
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
8-292 |
3.86e-13 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 69.59 E-value: 3.86e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 8 LLMIISIVtSICLVISSPSLFISWIGLELNTLAFLPLL-LSKKSKLASEASIKYFLTQTLASVLILVG------------ 74
Cdd:TIGR01770 106 ILLLFALL-GIFLLVSSNDLLSIYLGLELQSLCFYVLAgLKRKSRFSTEAGLKYFILGAFSSGLLLFGisliygftgsln 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 75 ---------GLWFLASWGGLATLTLLLGLSIKLGAAPFHSWVLSIAEASGWVPLFALLTIQKIN--------PLLMLWMF 137
Cdd:TIGR01770 185 fedlllflsNGMLNISLLLLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifavflrlFLYILFGF 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 138 CHLSMPFFYVVVLSSLIMGGLAGLTQTSVRSILTFSSINHVGWLMTALSFSLSVGA----YYFLIYLTTLLCSILIF-HM 212
Cdd:TIGR01770 265 SEAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIkavlFYIFIYALMSLGAFGVLsLL 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 213 FNVSHINQLPLLSFK------PSNQMLLFFALLSLGGLPPFLGFLPKWMILQLTVSYSLLLVGGAMISMSLVVLFFYLRL 286
Cdd:TIGR01770 345 RSYKDEWIEYISDFAglfktnPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV 424
|
....*.
gi 87083572 287 MFSAFM 292
Cdd:TIGR01770 425 VKVMYF 430
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
1-318 |
2.87e-53 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 177.71 E-value: 2.87e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 1 MWLSPSLLLMIISIVTSICLVISSPSLFISWIGLELNTLAFLPLLLSKKSKLASEASIKYFLTQTLASVLILVGGL---W 77
Cdd:MTH00160 1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIIlnmL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 78 FLASWGGLATLTLLLGLSIKLGAAPFHSWVLSIAEASGWVPLFALLTIQKINPLLMLWMFchLSMPFFYVVVLSSLIMGG 157
Cdd:MTH00160 81 NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL--INNNFIIIIIILSAIIGA 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 158 LAGLTQTSVRSILTFSSINHVGWLMTALSFSLSVGAYYFLIYLTTLLCSILIFHMFNVSHINQLPLLSFK-PSNQMLLFF 236
Cdd:MTH00160 159 IGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKsKKIKFLLFL 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 237 ALLSLGGLPPFLGFLPKWMILQLTVSYSLLLVGGAMISMSLVVLFFYLRLMFSAFMMGGVNLTTLSSDPLPFPVYFIALF 316
Cdd:MTH00160 239 NLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLILNFL 318
|
..
gi 87083572 317 SI 318
Cdd:MTH00160 319 SF 320
|
|
| ND2 |
MTH00112 |
NADH dehydrogenase subunit 2; Provisional |
6-292 |
1.09e-47 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214423 [Multi-domain] Cd Length: 346 Bit Score: 163.45 E-value: 1.09e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 6 SLLLMIISIVTSICLVISSPSLFISWIGLELNTLAFLPLLLSKKSKLASEASIKYFLTQTLASVLILVGGL---WFLASW 82
Cdd:MTH00112 5 AKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTtnaWNTGQW 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 83 ------GGLATLTLLLGLSIKLGAAPFHSWVLSIAEASGWVPLFALLTIQKINPLLMLWMFCH-LSMPFFYVVVLSSLIM 155
Cdd:MTH00112 85 ditqltNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNsLNPTLLLTLAILSTLI 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 156 GGLAGLTQTSVRSILTFSSINHVGWLMTALSFSLSVGAYYFLIYLTTLLCSILIFHMFNVSHINQLPLLSFK-PSNQMLL 234
Cdd:MTH00112 165 GGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKsPTLNTTL 244
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 87083572 235 FFALLSLGGLPPFLGFLPKWMILQLTVSYSLLLVGGAMISMSLVVLFFYLRLMFSAFM 292
Cdd:MTH00112 245 MLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTI 302
|
|
| ND2 |
MTH00105 |
NADH dehydrogenase subunit 2; Provisional |
7-289 |
1.08e-45 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177167 [Multi-domain] Cd Length: 347 Bit Score: 158.47 E-value: 1.08e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 7 LLLMIISIVTSICLVISSPSLFISWIGLELNTLAFLPLLLSKKSKLASEASIKYFLTQTLASVLILVG---GLWFLASWG 83
Cdd:MTH00105 6 LIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAiiiNLMYSGQWT 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 84 G------LATLTLLLGLSIKLGAAPFHSWVLSIAEASGWVPLFALLTIQKINPL-LMLWMFCHLSMPFFYVVVLSSLIMG 156
Cdd:MTH00105 86 ItkltnpTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLsILYQISPSINPNLLLTLAILSILIG 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 157 GLAGLTQTSVRSILTFSSINHVGWLMTALSFSLSVGAYYFLIYLTTLLCSILIFHMFNVSHINQLPLLSFK-PSNQMLLF 235
Cdd:MTH00105 166 GWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKtPLMTSLIL 245
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 87083572 236 FALLSLGGLPPFLGFLPKWMILQLTVSYSLLLVGGAMISMSLVVLFFYLRLMFS 289
Cdd:MTH00105 246 LTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYS 299
|
|
| ND2 |
MTH00144 |
NADH dehydrogenase subunit 2; Provisional |
4-318 |
3.65e-44 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214432 [Multi-domain] Cd Length: 328 Bit Score: 153.89 E-value: 3.65e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 4 SPSLLLMIISIVTSICLVISSPSLFISWIGLELNTLAFLPLLLSKKSKLASEASIKYFLTQTLASVLILVGGLWFLA-SW 82
Cdd:MTH00144 3 SPSNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNlSF 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 83 GGLATLTLLLGLSIKLGAAPFHSWVLSIAEASGWVPLFALLTIQKINPLLMLWMFCHLSMPFFYVVVLS--SLIMGGLAG 160
Cdd:MTH00144 83 SWFSMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLAYLLCVISvlSALVGSIGG 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 161 LTQTSVRSILTFSSINHVGWLMTALSFSLSVGAYYFLIYLTTLLCSILIFHMFNVSHINQLPLLSFKPSNQMLLFFALLS 240
Cdd:MTH00144 163 LNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSLKPSYKTGLSIISLLLS 242
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 87083572 241 LGGLPPFLGFLPKWMILQLTVSYSLLLVGGAMISMSLVVLFFYLRLMFSAFMMGGVNLTTLSSDPLPFPVYFIALFSI 318
Cdd:MTH00144 243 LGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKVLNSSIISLNLLGG 320
|
|
| ND2 |
MTH00041 |
NADH dehydrogenase subunit 2; Validated |
7-292 |
2.12e-42 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 177116 [Multi-domain] Cd Length: 349 Bit Score: 149.70 E-value: 2.12e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 7 LLLMIISIVTSICLVISSPSLFISWIGLELNTLAFLPLLLSKKSKLASEASIKYFLTQTLASVLILVGGL---WFLASWG 83
Cdd:MTH00041 6 LIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALiqaWLSGSWS 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 84 ------GLATLTLLLGLSIKLGAAPFHSWVLSIAEASGWVPLFALLTIQKINPLLMLWMFCHLSMPFFYVVV-LSSLIMG 156
Cdd:MTH00041 86 ingplnTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCgILSVLVG 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 157 GLAGLTQTSVRSILTFSSINHVGWLMTALSFSLSVGAYYFLIYLTTLLCSILIFHMFNVSHINQLPLLS-FKPSNQMLLF 235
Cdd:MTH00041 166 GWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSqLNPISAFLFI 245
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 87083572 236 FALLSLGGLPPFLGFLPKWMILQLTVSYSLLLVGGAMISMSLVVLFFYLRLMFSAFM 292
Cdd:MTH00041 246 LSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSL 302
|
|
| ND2 |
MTH00200 |
NADH dehydrogenase subunit 2; Provisional |
7-303 |
1.50e-40 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177246 [Multi-domain] Cd Length: 347 Bit Score: 145.11 E-value: 1.50e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 7 LLLMIISIVTSICLVISSPSLFISWIGLELNTLAFLPLLLSKKSKLASEASIKYFLTQTLASVLILVGGLWFLASWGGLA 86
Cdd:MTH00200 6 LPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQWG 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 87 TLTLLLGLSI---------KLGAAPFHSWVLSIAEASGWVPLFALLTIQKINPLLMLWMF-CHLSMPFFYVVVLSSLIMG 156
Cdd:MTH00200 86 ISEMLGPLSEtlillalalKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLaPALNSNILLLLGLLSVLVG 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 157 GLAGLTQTSVRSILTFSSINHVGWLMTALSFSLSVGAYYFLIYLTTLLCSILIFHMFNVSHINQLPL-LSFKPSNQMLLF 235
Cdd:MTH00200 166 GWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSsKTKNPILSMLLG 245
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 87083572 236 FALLSLGGLPPFLGFLPKWMILQLTVSYSLLLVGGAMISMSLVVLFFYLRLMFSAFMMGGVNLTTLSS 303
Cdd:MTH00200 246 LTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMS 313
|
|
| ND2 |
MTH00070 |
NADH dehydrogenase subunit 2; Provisional |
7-289 |
3.47e-40 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177142 [Multi-domain] Cd Length: 346 Bit Score: 143.91 E-value: 3.47e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 7 LLLMIISIVTSICLVISSPSLFISWIGLELNTLAFLPLLLSKKSKLASEASIKYFLTQTLASVLILVGGL---WFLASW- 82
Cdd:MTH00070 6 LSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTinaWFTGEWt 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 83 -----GGLATLTLLLGLSIKLGAAPFHSWVLSIAEASGWVPLFALLTIQKINPLLMLWMFCH-LSMPFFYVVVLSSLIMG 156
Cdd:MTH00070 86 imnmqTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHlLNSNLLIIMGLLSTLIG 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 157 GLAGLTQTSVRSILTFSSINHVGWLMTALSFSLSVGAYYFLIYLTTLLCSILIFHMFNVSHINQLPLLSFK-PSNQMLLF 235
Cdd:MTH00070 166 GWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKnPTLTSMMM 245
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 87083572 236 FALLSLGGLPPFLGFLPKWMILQLTVSYSLLLVGGAMISMSLVVLFFYLRLMFS 289
Cdd:MTH00070 246 LTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYA 299
|
|
| ND2 |
MTH00197 |
NADH dehydrogenase subunit 2; Provisional |
9-318 |
4.29e-36 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177244 [Multi-domain] Cd Length: 323 Bit Score: 132.49 E-value: 4.29e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 9 LMIISIVTSICLVISSPSLFISWIGLELNTLAFLPLLLSKKSKLASEASIKYFLTQTLASVLILVGGLWFLASWGGLATL 88
Cdd:MTH00197 2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNLYLSLLS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 89 TLLLGLSI--KLGAAPFHSWVLSIAEASGWVPLFALLTIQKINPLLMLWMFCHLSMPFFYVVVLSSLImGGLAGLTQTSV 166
Cdd:MTH00197 82 VVLVILGLllKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSSSFMGLLICSVLSSLI-GGIGGMNQSNI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 167 RSILTFSSINHVGWLMTALSFSLSVGAYYFLIYLTTLLCSILIFHMFNVSHINQLPLLSFKPS-NQMLLFFALLSLGGLP 245
Cdd:MTH00197 161 RQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSsNLVFLGLSFLSLGGLP 240
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 87083572 246 PFLGFLPKWMILQLTVSYSLLLVGGAMISMSLVVLFFYLRLMFSAFMMGGVNLTTLSSDPLPFPVYFIALFSI 318
Cdd:MTH00197 241 PLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMINFLMKINLLYSGLFILLMMM 313
|
|
| ND2 |
MTH00011 |
NADH dehydrogenase subunit 2; Validated |
4-293 |
6.00e-36 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 164587 [Multi-domain] Cd Length: 330 Bit Score: 132.21 E-value: 6.00e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 4 SPSLLLMIISIVTSICLVISSPSLFISWIGLELNTLAFLPLLLSKKSKLASEASIKYFLTQTLASVLILVG-GLWFLASW 82
Cdd:MTH00011 5 FPTMFLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGmTMMWSFPS 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 83 GGLATLTLLLGLSI--KLGAAPFHSWVLSIAEASGWVPLFALLTIQKINPLLMLWMFCHLS-MPFFYVVVLSSLIMGGLA 159
Cdd:MTH00011 85 LLKNITALMLLVSLmlKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNiLPMMTSMAAMSALAGGLG 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 160 GLTQTSVRSILTFSSINHVGWLMTALSFSLSVGAYYFLIYLTTLLCSILIFHMFNVSHINQLPLLS-FKPSNQMLLFFAL 238
Cdd:MTH00011 165 GMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISsMSQTTSMSLFIML 244
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 87083572 239 LSLGGLPPFLGFLPKWMILQLTVSYSLLLVGGAMISMSLVVLFFYLRLMFSAFMM 293
Cdd:MTH00011 245 LSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNFMYL 299
|
|
| ND2 |
MTH00135 |
NADH dehydrogenase subunit 2; Provisional |
28-286 |
8.39e-34 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177193 [Multi-domain] Cd Length: 347 Bit Score: 126.84 E-value: 8.39e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 28 FISWIGLELNTLAFLPLLLSKKSKLASEASIKYFLTQTLASVLILVGGL---WFLASWGG------LATLTLLLGLSIKL 98
Cdd:MTH00135 27 LLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTtnaWLTGQWDIqqmshpLPTTMITLALALKI 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 99 GAAPFHSWVLSIAEA---------SGWVPL--FALLT-IQKINPLLMLWMfchlsmpffyvvVLSSLIMGGLAGLTQTSV 166
Cdd:MTH00135 107 GLAPLHFWLPEVLQGldlttglilSTWQKLapFALILqIAPTNPTLLITL------------GLTSTLVGGWGGLNQTQL 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 167 RSILTFSSINHVGWLMTALSFSLSVGAYYFLIYLTTLLCSILIFHMFNVSHINQLPLLSFK-PSNQMLLFFALLSLGGLP 245
Cdd:MTH00135 175 RKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKaPALTALTPLILLSLGGLP 254
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 87083572 246 PFLGFLPKWMILQLTVSYSLLLVGGAMISMSLVVLFFYLRL 286
Cdd:MTH00135 255 PLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRL 295
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
20-305 |
3.26e-17 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 82.09 E-value: 3.26e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 20 LVISSPSLFISWIGLELNTLAFLPLL-LSKKSKLASEASIKYFLTQTLASVLILVG---------------------GLW 77
Cdd:COG1007 117 LMASANDLLTLFLGLELLSLSLYVLVaFRRDDRRSSEAALKYFLLGALSSGFLLYGisllygatgslnlagiaaalaAGG 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 78 FLASWGGLATLTLLLGLSIKLGAAPFHSWVLSIAEASGwVPLFALL-TIQKINPLLMLWMFCHLSMP--------FFYVV 148
Cdd:COG1007 197 ANSPLLLLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAP-TPVTAFLaTAPKIAAFAALLRLLVEAFPglaadwqlLLAVL 275
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 149 VLSSLIMGGLAGLTQTSVRSILTFSSINHVGWLMTAL----SFSLSVGAYYFLIYLTTLLCSILIF-----HMFNVSHIN 219
Cdd:COG1007 276 AVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLaagtPLGVSAALFYLLAYLFMNLGAFAVIlllsrKGGEAEEIE 355
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 220 QL-------PLLSFkpsnqmLLFFALLSLGGLPPFLGFLPKWMILQLTVSYSLLLVGGAMISMSLVVLFFYLRLMFSAFM 292
Cdd:COG1007 356 DLaglarrsPLLAL------AMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVKAMYF 429
|
330
....*....|...
gi 87083572 293 MGGVNLTTLSSDP 305
Cdd:COG1007 430 DEPEEEAPISAPP 442
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
24-267 |
6.79e-15 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 73.89 E-value: 6.79e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 24 SPSLFISWIGLELNTLAFLPLLLS-KKSKLASEASIKYFLTQTLASVLILVGGLWFLA--------------------SW 82
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLIGYwGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNytgtlsfdelskaltgglnsSG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 83 GGLATLTLLLGLSIKLGAAPFHSWVLSIAEASGW-VPLFALLTIQKINPLLMLWMFCHLS------MPFFYVVVLSSLIM 155
Cdd:pfam00361 81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTpVSALLAATLVKAGGYGLIRRSLLYLpsspfiQQILLILAIISMLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 156 GGLAGLTQTSVRSILTFSSINHVGWLMTALSFSLSVGAYYFLIYLTT-LLCSILIFHMFNVSHINQLP---------LLS 225
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLThGLFSAGLFLCAGSVIYRRVHtrnirdyggLAK 240
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 87083572 226 FKPSNQMLLFFALLSLGGLPPFLGFLPKWMILQLTVSYSLLL 267
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIF 282
|
|
| ND2 |
MTH00196 |
NADH dehydrogenase subunit 2; Provisional |
14-286 |
9.10e-15 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214453 [Multi-domain] Cd Length: 365 Bit Score: 74.30 E-value: 9.10e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 14 IVTSICLVISSPSLFISWIGLELNTLAFLPLLLSKK-SKLASEASIKYFLTQTLASVLILVG------------------ 74
Cdd:MTH00196 2 VALGILCLISSSNWLSVYLAIELQTLSLFILIAQNRgSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlsyinl 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 75 ----GLWFLASWGGLATLTLLLGLSIKLGAAPFHSWVLSIAEASGWVPLFALLTIQKINPLLMLWMFcHLSMPFFYVVVL 150
Cdd:MTH00196 82 vlnsGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSI-GLNVNILLIGGL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 151 SSLIMGGLAGLTQTSVRSILTFSSINHVGWLMTALSF----SLSVGAYYFLIYLTTLLC--SILIFHMFNVSHINQLPLL 224
Cdd:MTH00196 161 FSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIgsfeSIQASLVYLFIYIIMSICvfSIILALNVYKNLIIEFSGL 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 87083572 225 S-FKPSNQMLLFFALLSLGGLPPFLGFLPKWMILQLTVSYSLLLVGGAMISMSLVVLFFYLRL 286
Cdd:MTH00196 241 SrRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
|
|
| PRK05777 |
PRK05777 |
NADH-quinone oxidoreductase subunit NuoN; |
8-292 |
3.92e-14 |
|
NADH-quinone oxidoreductase subunit NuoN;
Pssm-ID: 235603 [Multi-domain] Cd Length: 476 Bit Score: 72.93 E-value: 3.92e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 8 LLMIISIVtSICLVISSPSLFISWIGLELNTLA-FLPLLLSKKSKLASEASIKYFLTQTLASVLILVGGLWF-------- 78
Cdd:PRK05777 107 LLVLFALL-GMMVMVSANDLLTLFLGLELLSLPlYALAALRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLygatgsls 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 79 ----LASWGGLATLTLLLGLSI---------KLGAAPFHSWVLSIAE-ASGWVPLFaLLTIQKINPLLMLWMFCHLSMP- 143
Cdd:PRK05777 186 fagiAKALADGSGNSLLLLFGLvfllvglafKLSAVPFHMWTPDVYEgAPTPVTAF-LATAPKIAAFAVLLRLLVVAFGg 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 144 -------FFYVVVLSSLIMGGLAGLTQTSVRSILTFSSINHVGWLMTAL----SFSLSVGAYYFLIYLTTLLCSILIFHM 212
Cdd:PRK05777 265 lsedwqqVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLaagtAEGYSAVLFYLLAYLFMTLGAFGVISL 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 213 -----FNVSHINQL-------PLLSFkpsnqMLLFFaLLSLGGLPPFLGFLPKWMILQLTVSYSLLLVGGAMISMSLVVL 280
Cdd:PRK05777 345 lrrkgGEAESISDFaglskrsPLLAA-----VMTIF-MLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGA 418
|
330
....*....|..
gi 87083572 281 FFYLRLMFSAFM 292
Cdd:PRK05777 419 FYYLRVIKLMYF 430
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
8-292 |
3.86e-13 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 69.59 E-value: 3.86e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 8 LLMIISIVtSICLVISSPSLFISWIGLELNTLAFLPLL-LSKKSKLASEASIKYFLTQTLASVLILVG------------ 74
Cdd:TIGR01770 106 ILLLFALL-GIFLLVSSNDLLSIYLGLELQSLCFYVLAgLKRKSRFSTEAGLKYFILGAFSSGLLLFGisliygftgsln 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 75 ---------GLWFLASWGGLATLTLLLGLSIKLGAAPFHSWVLSIAEASGWVPLFALLTIQKIN--------PLLMLWMF 137
Cdd:TIGR01770 185 fedlllflsNGMLNISLLLLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifavflrlFLYILFGF 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 138 CHLSMPFFYVVVLSSLIMGGLAGLTQTSVRSILTFSSINHVGWLMTALSFSLSVGA----YYFLIYLTTLLCSILIF-HM 212
Cdd:TIGR01770 265 SEAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIkavlFYIFIYALMSLGAFGVLsLL 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 213 FNVSHINQLPLLSFK------PSNQMLLFFALLSLGGLPPFLGFLPKWMILQLTVSYSLLLVGGAMISMSLVVLFFYLRL 286
Cdd:TIGR01770 345 RSYKDEWIEYISDFAglfktnPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV 424
|
....*.
gi 87083572 287 MFSAFM 292
Cdd:TIGR01770 425 VKVMYF 430
|
|
| HyfB |
COG0651 |
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ... |
15-290 |
2.35e-11 |
|
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 440416 [Multi-domain] Cd Length: 430 Bit Score: 64.01 E-value: 2.35e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 15 VTSICLVISSPSLFISWIGLELNTLAFLPLLLSKKSKLASEASIKYFLTQTLASVLILVGGLWFLAS------------- 81
Cdd:COG0651 117 LAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGAtgtlnmadlaarl 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 82 ------WGGLATLTLLLGLSIKLGAAPFHSWvLSIAEASGWVPLFALL----------TIQKINPLLMLWMFCHLSMPFF 145
Cdd:COG0651 197 aeldpgLLLAAFALLLVGFGIKAALFPLHFW-LPDAYPAAPSPVSALLsglltkvgvyAILRVLTLLFGADPALFLGTLL 275
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 146 YVVVLSSLIMGGLAGLTQTSVRSILTFSSINHVGWLMTALSFSLSVGAYYFLIYL-------TTL-LCSILIFHMFNVSH 217
Cdd:COG0651 276 LVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLlnhalakALLfLAAGAIERATGTRD 355
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 87083572 218 INQLP-LLSFKPSNQMLLFFALLSLGGLPPFLGFLPKWMILQLTVSYSLLLVGGAMISMSLVVLFFYLRLMFSA 290
Cdd:COG0651 356 LDKLGgLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRIFGRA 429
|
|
| ND2 |
MTH00199 |
NADH dehydrogenase subunit 2; Provisional |
6-286 |
8.19e-10 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177245 [Multi-domain] Cd Length: 460 Bit Score: 59.65 E-value: 8.19e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 6 SLLLMIISIVTSICLViSSPSLFISWIGLELNTLA-FLPLLLSKKSKLASEASIKYFLTQTLASVLILVGG--LWFLASW 82
Cdd:MTH00199 99 SPILILIVALGSLLLV-SSINWLSIYLAIELQTLTlFILVALKRDSAYSTEAGLKYFVLGAVSSGLFLFGCalLYGLTGE 177
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 83 GGLATLTLLLGLSI-----------KLGAAPFHSWVLSIAEASGWVPLFALLTIQKINPLLMLWMFCHLSMPFFYVVVLS 151
Cdd:MTH00199 178 TSIQGINSILTGDVgkilitisllfKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLICAVLS 257
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 152 sLIMGGLAGLTQTSVRSILTFSSINHVGWLMTALSF----SLSVGAYYFLIYLTTLLCSILIFHMFNVSH--INQLPLLS 225
Cdd:MTH00199 258 -IIYGAIGALNQTKIKRLLAYSGIGHMGFILFGVAIgsfeSIQASLIYMIIYVIMSICSFSIILSLKLTKglIVEVSGLS 336
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 87083572 226 FK-PSNQMLLFFALLSLGGLPPFLGFLPKWMILQLTVSYSLLLVGGAMISMSLVVLFFYLRL 286
Cdd:MTH00199 337 RKnPVIALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
|
|
| ND2 |
MTH00198 |
NADH dehydrogenase subunit 2; Provisional |
97-289 |
2.35e-08 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214454 [Multi-domain] Cd Length: 607 Bit Score: 55.25 E-value: 2.35e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 97 KLGAAPFHSWVLSIAEASGwVPLFALLTIQKINPLLMLWMFCHLSMPFFYVVVLSSLIMGGLAGLTQTSVRSILTFSSIN 176
Cdd:MTH00198 312 KLAAAPFHMWTPDVYEGAP-TPTTALIAIIPKFTVYILLTSLVITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIG 390
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 177 HVGWLMTALSF----SLSVGAYYFLIYLTTLLCSILIFHMF------------------NVSHINQLPLLSFKPSNQMLL 234
Cdd:MTH00198 391 HIGFILIGVSAgtyeSLQASWTYAVTYLVSALASFTVICTLeefgtrtptsrqrdgsfgNYNLVRRLVDLTILSRGQPYI 470
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 87083572 235 FFAL----LSLGGLPPFLGFLPKWMIlqltvsysllLVGGAMISMSLVVLFFYLRLMFS 289
Cdd:MTH00198 471 AFSLaivfLSLAGIPPLLGFLGKWFI----------LVGSIKIAFSSSLSIYYLVALFA 519
|
|
| ndhB |
CHL00049 |
NADH dehydrogenase subunit 2 |
97-286 |
3.14e-07 |
|
NADH dehydrogenase subunit 2
Pssm-ID: 176990 [Multi-domain] Cd Length: 494 Bit Score: 51.54 E-value: 3.14e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 97 KLGAAPFHSWVLSIAEASGwVPLFALLTI-QKINPLLMLWMFCHLSMPF--------FYVVVLSSLIMGGLAGLTQTSVR 167
Cdd:CHL00049 227 KLSLAPFHQWTPDVYEGSP-TPVVAFLSVtSKVAASALATRIFDIPFYFssnewhllLEILAILSMILGNLIAITQTSMK 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 168 SILTFSSINHVGWLMTALSFSLSVGAY-----YFLIY----LTTLLCSILIFHMFNVSHIN-------QLPLLSFKPSnq 231
Cdd:CHL00049 306 RMLAYSSIGQIGYVIIGIIVGDSNDGYasmitYMLFYifmnLGTFACIVLFGLRTGTDNIRdyaglytKDPFLALSLA-- 383
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 87083572 232 mllfFALLSLGGLPPFLGFLPK----WMILQlTVSYSLLLVGgamISMSLVVLFFYLRL 286
Cdd:CHL00049 384 ----LCLLSLGGIPPLAGFFGKlylfWCGWQ-AGLYFLVSIG---LLTSVISIYYYLKI 434
|
|
| PRK08375 |
PRK08375 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
147-292 |
7.93e-07 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236251 [Multi-domain] Cd Length: 487 Bit Score: 50.26 E-value: 7.93e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 147 VVVLSSLIMGGLAGLTQTSVRSILTFSSINHVGWLMTALSFSLSVGAYYFLIYL--------TTLLCSILIFHMFNVSHI 218
Cdd:PRK08375 276 VLALLSMLVGSLAALGQDDVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLlhhalmkgALFLAAGAIEVTYGTRRL 355
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 87083572 219 NQLPLLSFKPSNQMLLFFAL-LSLGGLPPFLGFLPKWMILQLTVSYSLLLVGGAMISMSLVVLFFYLRLMFSAFM 292
Cdd:PRK08375 356 SELSGLGRRMPLTAAAFAVAsLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWYRAFF 430
|
|
| PRK12665 |
PRK12665 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
147-291 |
2.27e-05 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 237165 [Multi-domain] Cd Length: 521 Bit Score: 45.73 E-value: 2.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 147 VVVLSSLIMGGLAGLTQTSVRSILTFSSINHVGWLMTALSFSLSVG--------AYYFLIYLTTLLCSILIFHMFNVSHI 218
Cdd:PRK12665 278 VVALLTMVVGILGAIAQSDIKRLLSFTLVSHIGYMVFGIALSTVAGlsgaiyyvAHHITVQTTLFLVVGLIERQAGSSSL 357
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 87083572 219 NQLP-LLSFKPSNQMLLFFALLSLGGLPPFLGFLPKWMILQLTVS----YSLLLVGGAMISmSLVVLFFYLRLMFSAF 291
Cdd:PRK12665 358 RRLGgLAKASPLLAVLFFVPALNLGGIPPFSGFIGKVALLEAGAEdgtwLAWALVAGGVVT-SLLTLYAVARVWTKAF 434
|
|
| PRK02504 |
PRK02504 |
NAD(P)H-quinone oxidoreductase subunit N; |
95-285 |
1.53e-04 |
|
NAD(P)H-quinone oxidoreductase subunit N;
Pssm-ID: 235044 [Multi-domain] Cd Length: 513 Bit Score: 43.12 E-value: 1.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 95 SIKLGAAPFHSWVLSIAEASGwVPLFALLTI---------------QKINPLLMLWMFchlsmpFFYVVVLSSLIMGGLA 159
Cdd:PRK02504 221 AFKISAVPFHQWTPDVYEGSP-TPVVAFLSVgskaagfalairllvTAFPSFDEQWKL------LFTALAILSMVLGNVV 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 160 GLTQTSVRSILTFSSINHVGWLMTALSFSLSVG----AYYFLIYLTTLLCSILIFHMFNV----SHINQLPLLSFK-PSN 230
Cdd:PRK02504 294 ALAQTSMKRMLAYSSIGQAGFVMIGLVAGTEAGyasmVFYLLAYLFMNLGAFACVILFSLrtgtDQISDYAGLYQKdPLL 373
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 87083572 231 QMLLFFALLSLGGLPPFLGFLPKWMILQLTVS---YSLLLVGgamISMSLVVLFFYLR 285
Cdd:PRK02504 374 TLGLSLCLLSLGGIPPLAGFFGKIYLFWAGWQaglYLLVLVG---LVTSVISIYYYIR 428
|
|
| PRK08376 |
PRK08376 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
27-292 |
2.60e-04 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236252 [Multi-domain] Cd Length: 521 Bit Score: 42.39 E-value: 2.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 27 LFISWIGLELNTLAFLPLLLSKKSK-LASEASIKYFLTQTLASVLILVG-----------GLWFLASWGGL--------A 86
Cdd:PRK08376 143 LFNFFVFLEIMSIASYALVAFRNDTwEAIEAGIKYMFVGSLASSMVLLGiallygqygtlNMAYLAVKMSEnptvvakiA 222
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 87 TLTLLLGLSIKLGAAPFHSWVlsiAEASGWVP--LFALLTIQKINPLLMLWMFC------HLSMPF--FYVVVLS--SLI 154
Cdd:PRK08376 223 LALFIAGLAMKSGAVPVHMWL---PDAYPAAPssISAMLLVIKQAGLYALARVLfsiygpAINLATvgWVIIILGclTMF 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 155 MGGLAGLTQTSVRSILTFSSINHVGWLMTALSFSLSV---------------GAYYFLIYLTT-----LLCSILIFHMFN 214
Cdd:PRK08376 300 VGVAMAVVQKDVKRLLAYHSVSQIGYMLLGLGVGLAAlgdpamasygeialaGGIYHIVNHALykallFLTAGAVIYETG 379
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 87083572 215 VSHINQLPLLSFKPSNQMLLFF-ALLSLGGLPPFLGFLPKWMILQLTVSYSLLLVGGAMISmSLVVLFFYLRLMFSAFM 292
Cdd:PRK08376 380 TRNLNELGGLARTMPKTTIAFLiGAAAIVGLPPFNGFASKWLIYESSALFNPILGVIAMIG-SVLTLASFVKVFHTAFF 457
|
|
| PRK08668 |
PRK08668 |
NADH dehydrogenase subunit M; Validated |
152-272 |
5.28e-03 |
|
NADH dehydrogenase subunit M; Validated
Pssm-ID: 236332 [Multi-domain] Cd Length: 610 Bit Score: 38.44 E-value: 5.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 152 SLIMGGLAGLTQTSVRSILTFSSINHVGWLMTALSF--SLSVGAYYFLIyLTTLLCSILIFHMF-------NVSHINQLP 222
Cdd:PRK08668 282 SIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLgtSLGFAGGLFHV-FNHALFKGLFFLIFaaviyrtGTTKISEMG 360
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 87083572 223 LLSFK-PSNQMLLFFALLSLGGLPPFLGFLPKWMILQLTVSYSLLLVGGAM 272
Cdd:PRK08668 361 GLIEKmPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMA 411
|
|
| PRK06277 |
PRK06277 |
energy conserving hydrogenase EhbF; |
131-292 |
5.59e-03 |
|
energy conserving hydrogenase EhbF;
Pssm-ID: 235767 [Multi-domain] Cd Length: 478 Bit Score: 38.47 E-value: 5.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 131 LLMLWMFCHLS-MPFFYVVVLS----SLIMGGLAGLTQTSVRSILTFSSINHVGWLMT--ALSFSLSVGAYYF-----LI 198
Cdd:PRK06277 250 LVIFKLFGGLSyFPSAQGVLIAlsvlAMVFGVVMALLQTDYKRLLAYHAISQGGYVAAglALGTPLGIVAGIFhainhVI 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87083572 199 YLTTL-LCSILIFHMFNVSHINQL-PLLSFKPSNQMLLFFALLSLGGLPPFLGFLPKWMILQLTVSYSLLLVGGAMISMS 276
Cdd:PRK06277 330 YKSALfLGAGIVSYRTKTSNLRKLgGLLPVMPVVAFMVLCAKLAISGVPPFNGFQSKLMLAQAAMQANMPELAIIMIIVS 409
|
170
....*....|....*.
gi 87083572 277 LVVLFFYLRLMFSAFM 292
Cdd:PRK06277 410 IGTFVSMMKAFYLIYL 425
|
|
| |
