NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|870636215|gb|AKP09703|]
View 

P1 protein, partial [Pepper vein yellows virus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Peptidase_S39 super family cl09540
Peptidase S39; This family contains polyprotein processing endopeptidases from RNA viruses.
 205-278 3.45e-25

Peptidase S39; This family contains polyprotein processing endopeptidases from RNA viruses.


The actual alignment was detected with superfamily member pfam02122:

Pssm-ID: 111059  Cd Length: 203  Bit Score: 99.38  E-value: 3.45e-25
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 870636215  205 VKGFISLKIPQSPPRGSVLLVQHEDNSHAGYASCVRLYDGTLALMTCHHVGTgvPGGKVTSTKTPNKIPLRLFT 278
Cdd:pfam02122   1 VEGFKSFSIPQKPPKNSVLEISHPDGSHVGYATCVRLYDGENALVTAEHVLS--DPSLVLSLRTGEKIPLAEFK 72
 
Name Accession Description Interval E-value
Peptidase_S39 pfam02122
Peptidase S39; This family contains polyprotein processing endopeptidases from RNA viruses.
 205-278 3.45e-25

Peptidase S39; This family contains polyprotein processing endopeptidases from RNA viruses.


Pssm-ID: 111059  Cd Length: 203  Bit Score: 99.38  E-value: 3.45e-25
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 870636215  205 VKGFISLKIPQSPPRGSVLLVQHEDNSHAGYASCVRLYDGTLALMTCHHVGTgvPGGKVTSTKTPNKIPLRLFT 278
Cdd:pfam02122   1 VEGFKSFSIPQKPPKNSVLEISHPDGSHVGYATCVRLYDGENALVTAEHVLS--DPSLVLSLRTGEKIPLAEFK 72
 
Name Accession Description Interval E-value
Peptidase_S39 pfam02122
Peptidase S39; This family contains polyprotein processing endopeptidases from RNA viruses.
 205-278 3.45e-25

Peptidase S39; This family contains polyprotein processing endopeptidases from RNA viruses.


Pssm-ID: 111059  Cd Length: 203  Bit Score: 99.38  E-value: 3.45e-25
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 870636215  205 VKGFISLKIPQSPPRGSVLLVQHEDNSHAGYASCVRLYDGTLALMTCHHVGTgvPGGKVTSTKTPNKIPLRLFT 278
Cdd:pfam02122   1 VEGFKSFSIPQKPPKNSVLEISHPDGSHVGYATCVRLYDGENALVTAEHVLS--DPSLVLSLRTGEKIPLAEFK 72
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH