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Conserved domains on  [gi|8650397|gb|AAF78192|]
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cytochrome b, partial (mitochondrion) [Galago gallarum]

Protein Classification

cytochrome b( domain architecture ID 999999)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 1-90 4.09e-64

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 197.55  E-value: 4.09e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8650397     1 LLGLCLMIQIITGLFLAMHYTSDTSTAFSSVTHICRDVNYGWIIRYLHANGASMFFICLFMHIGRGLYYGSFTFLETWNI 80
Cdd:MTH00100  36 LLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNI 115

                         90
                 ....*....|
gi 8650397    81 GIILLFTVMA 90
Cdd:MTH00100 116 GIILLFTVMA 125
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-90 4.09e-64

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 197.55  E-value: 4.09e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8650397     1 LLGLCLMIQIITGLFLAMHYTSDTSTAFSSVTHICRDVNYGWIIRYLHANGASMFFICLFMHIGRGLYYGSFTFLETWNI 80
Cdd:MTH00100  36 LLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNI 115

                         90
                 ....*....|
gi 8650397    81 GIILLFTVMA 90
Cdd:MTH00100 116 GIILLFTVMA 125
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-90 2.66e-35

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 118.62  E-value: 2.66e-35
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8650397    1 LLGLCLMIQIITGLFLAMHYTSDTSTAFSSVTHICRDVNYGWIIRYLHANGASMFFICLFMHIGRGLYYGSF--TFLETW 78
Cdd:cd00284  28 LLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTW 107

                        90
                ....*....|..
gi 8650397   79 NIGIILLFTVMA 90
Cdd:cd00284 108 VIGVILLLLTMA 119
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-90 1.13e-30

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 106.70  E-value: 1.13e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8650397      1 LLGLCLMIQIITGLFLAMHYTSDTSTAFSSVTHICRDVNYGWIIRYLHANGASMFFICLFMHIGRGLYYGSF--TFLETW 78
Cdd:pfam00033  19 LLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGGFsyPRELTW 98

                          90
                  ....*....|..
gi 8650397     79 NIGIILLFTVMA 90
Cdd:pfam00033  99 VIGVILLVLTMS 110
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-90 5.45e-30

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 109.11  E-value: 5.45e-30
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8650397    1 LLGLCLMIQIITGLFLAMHYTSDTSTAFSSVTHICRDVNYGWIIRYLHANGASMFFICLFMHIGRGLYYGSFTF---LeT 77
Cdd:COG1290  45 LALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYKKpreL-N 123

                        90
                ....*....|...
gi 8650397   78 WNIGIILLFTVMA 90
Cdd:COG1290 124 WIIGVLLLLLTMA 136
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-90 4.09e-64

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 197.55  E-value: 4.09e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8650397     1 LLGLCLMIQIITGLFLAMHYTSDTSTAFSSVTHICRDVNYGWIIRYLHANGASMFFICLFMHIGRGLYYGSFTFLETWNI 80
Cdd:MTH00100  36 LLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNI 115

                         90
                 ....*....|
gi 8650397    81 GIILLFTVMA 90
Cdd:MTH00100 116 GIILLFTVMA 125
CYTB MTH00131
cytochrome b; Provisional
 1-90 2.11e-55

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 175.23  E-value: 2.11e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8650397     1 LLGLCLMIQIITGLFLAMHYTSDTSTAFSSVTHICRDVNYGWIIRYLHANGASMFFICLFMHIGRGLYYGSFTFLETWNI 80
Cdd:MTH00131  36 LLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNI 115

                         90
                 ....*....|
gi 8650397    81 GIILLFTVMA 90
Cdd:MTH00131 116 GVVLLLLVMM 125
CYTB MTH00074
cytochrome b; Provisional
 1-90 1.50e-54

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 172.94  E-value: 1.50e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8650397     1 LLGLCLMIQIITGLFLAMHYTSDTSTAFSSVTHICRDVNYGWIIRYLHANGASMFFICLFMHIGRGLYYGSFTFLETWNI 80
Cdd:MTH00074  37 LLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNI 116

                         90
                 ....*....|
gi 8650397    81 GIILLFTVMA 90
Cdd:MTH00074 117 GVILLFLVMA 126
CYTB MTH00119
cytochrome b; Provisional
 1-90 4.63e-54

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 171.62  E-value: 4.63e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8650397     1 LLGLCLMIQIITGLFLAMHYTSDTSTAFSSVTHICRDVNYGWIIRYLHANGASMFFICLFMHIGRGLYYGSFTFLETWNI 80
Cdd:MTH00119  37 LLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNT 116

                         90
                 ....*....|
gi 8650397    81 GIILLFTVMA 90
Cdd:MTH00119 117 GVILLLLLMA 126
CYTB MTH00156
cytochrome b; Provisional
 1-90 3.53e-53

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 168.81  E-value: 3.53e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8650397     1 LLGLCLMIQIITGLFLAMHYTSDTSTAFSSVTHICRDVNYGWIIRYLHANGASMFFICLFMHIGRGLYYGSFTFLETWNI 80
Cdd:MTH00156  26 LLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMS 105

                         90
                 ....*....|
gi 8650397    81 GIILLFTVMA 90
Cdd:MTH00156 106 GVIILFLVMA 115
CYTB MTH00191
cytochrome b; Provisional
 1-90 2.96e-52

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 166.63  E-value: 2.96e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8650397     1 LLGLCLMIQIITGLFLAMHYTSDTSTAFSSVTHICRDVNYGWIIRYLHANGASMFFICLFMHIGRGLYYGSFTFLETWNI 80
Cdd:MTH00191  33 LLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETWNV 112

                         90
                 ....*....|
gi 8650397    81 GIILLFTVMA 90
Cdd:MTH00191 113 GVILLILSMA 122
CYTB MTH00145
cytochrome b; Provisional
 1-90 1.22e-48

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 157.76  E-value: 1.22e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8650397     1 LLGLCLMIQIITGLFLAMHYTSDTSTAFSSVTHICRDVNYGWIIRYLHANGASMFFICLFMHIGRGLYYGSFTFLETWNI 80
Cdd:MTH00145  37 LLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNI 116

                         90
                 ....*....|
gi 8650397    81 GIILLFTVMA 90
Cdd:MTH00145 117 GVTLLLLSMG 126
CYTB MTH00034
cytochrome b; Validated
 1-89 7.68e-48

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 155.63  E-value: 7.68e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8650397     1 LLGLCLMIQIITGLFLAMHYTSDTSTAFSSVTHICRDVNYGWIIRYLHANGASMFFICLFMHIGRGLYYGSFTFLETWNI 80
Cdd:MTH00034  36 LLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETWNI 115


                 ....*....
gi 8650397    81 GIILLFTVM 89
Cdd:MTH00034 116 GVILFLLTM 124
CYTB MTH00016
cytochrome b; Validated
 1-90 9.75e-46

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 150.21  E-value: 9.75e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8650397     1 LLGLCLMIQIITGLFLAMHYTSDTSTAFSSVTHICRDVNYGWIIRYLHANGASMFFICLFMHIGRGLYYGSFTFLETWNI 80
Cdd:MTH00016  37 LLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNI 116

                         90
                 ....*....|
gi 8650397    81 GIILLFTVMA 90
Cdd:MTH00016 117 GVILLLLTMA 126
CYTB MTH00224
cytochrome b; Provisional
 1-90 2.11e-39

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 133.89  E-value: 2.11e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8650397     1 LLGLCLMIQIITGLFLAMHYTSDTSTAFSSVTHICRDVNYGWIIRYLHANGASMFFICLFMHIGRGLYYGSFTFLETWNI 80
Cdd:MTH00224  37 LLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNI 116

                         90
                 ....*....|
gi 8650397    81 GIILLFTVMA 90
Cdd:MTH00224 117 GVILFILTMA 126
CYTB MTH00022
cytochrome b; Validated
 1-90 3.52e-39

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 133.29  E-value: 3.52e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8650397     1 LLGLCLMIQIITGLFLAMHYTSDTSTAFSSVTHICRDVNYGWIIRYLHANGASMFFICLFMHIGRGLYYGSFTFLETWNI 80
Cdd:MTH00022  35 LLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNV 114

                         90
                 ....*....|
gi 8650397    81 GIILLFTVMA 90
Cdd:MTH00022 115 GVVIFLLTMA 124
CYTB MTH00053
cytochrome b; Provisional
 1-90 7.50e-38

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 129.83  E-value: 7.50e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8650397     1 LLGLCLMIQIITGLFLAMHYTSDTSTAFSSVTHICRDVNYGWIIRYLHANGASMFFICLFMHIGRGLYYGSFTFLETWNI 80
Cdd:MTH00053  37 LLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNV 116

                         90
                 ....*....|
gi 8650397    81 GIILLFTVMA 90
Cdd:MTH00053 117 GVLIFLLMIL 126
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-90 2.66e-35

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 118.62  E-value: 2.66e-35
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8650397    1 LLGLCLMIQIITGLFLAMHYTSDTSTAFSSVTHICRDVNYGWIIRYLHANGASMFFICLFMHIGRGLYYGSF--TFLETW 78
Cdd:cd00284  28 LLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTW 107

                        90
                ....*....|..
gi 8650397   79 NIGIILLFTVMA 90
Cdd:cd00284 108 VIGVILLLLTMA 119
CYTB MTH00033
cytochrome b; Provisional
 1-89 8.44e-32

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 113.88  E-value: 8.44e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8650397     1 LLGLCLMIQIITGLFLAMHYTSDTSTAFSSVTHICRDVNYGWIIRYLHANGASMFFICLFMHIGRGLYYGSFTFLETWNI 80
Cdd:MTH00033  33 LLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTWIV 112


                 ....*....
gi 8650397    81 GIILLFTVM 89
Cdd:MTH00033 113 GVLIFFIMM 121
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-90 1.13e-30

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 106.70  E-value: 1.13e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8650397      1 LLGLCLMIQIITGLFLAMHYTSDTSTAFSSVTHICRDVNYGWIIRYLHANGASMFFICLFMHIGRGLYYGSF--TFLETW 78
Cdd:pfam00033  19 LLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGGFsyPRELTW 98

                          90
                  ....*....|..
gi 8650397     79 NIGIILLFTVMA 90
Cdd:pfam00033  99 VIGVILLVLTMS 110
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-90 5.45e-30

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 109.11  E-value: 5.45e-30
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8650397    1 LLGLCLMIQIITGLFLAMHYTSDTSTAFSSVTHICRDVNYGWIIRYLHANGASMFFICLFMHIGRGLYYGSFTF---LeT 77
Cdd:COG1290  45 LALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYKKpreL-N 123

                        90
                ....*....|...
gi 8650397   78 WNIGIILLFTVMA 90
Cdd:COG1290 124 WIIGVLLLLLTMA 136
CYTB MTH00086
cytochrome b; Provisional
 1-89 1.28e-23

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 91.54  E-value: 1.28e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8650397     1 LLGLCLMIQIITGLFLAMHYTSDTSTAFSSVTHICRDVNYGWIIRYLHANGASMFFICLFMHIGRGLYYGSFTFLETWNI 80
Cdd:MTH00086  25 MLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWIS 104


                 ....*....
gi 8650397    81 GIILLFTVM 89
Cdd:MTH00086 105 GLTIYLLVM 113
CYTB MTH00046
cytochrome b; Validated
 1-90 7.98e-17

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 73.09  E-value: 7.98e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8650397     1 LLGLCLMIQIITGLFLAMHYTSDTSTAFSSVTHICRDVNYGWIIRYLHANGASMFFICLFMHIGRGLYYGSFTFLETWNI 80
Cdd:MTH00046  27 VLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVWNV 106

                         90
                 ....*....|
gi 8650397    81 GIILLFTVMA 90
Cdd:MTH00046 107 GFILYLLVMV 116
PRK03735 PRK03735
cytochrome b6; Provisional
 4-90 1.01e-15

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 68.58  E-value: 1.01e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8650397     4 LCLMIQIITGLFLAMHYTSDTSTAFSSVTHICRDVNYGWIIRYLHANGASMFFICLFMHIGRGLYYGSFTFLE--TWNIG 81
Cdd:PRK03735  50 FCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRelNWVVG 129


                 ....*....
gi 8650397    82 IILLFTVMA 90
Cdd:PRK03735 130 VLIFFVTVG 138
petB CHL00070
cytochrome b6
 5-84 8.18e-12

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 58.19  E-value: 8.18e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8650397     5 CLMIQIITGLFLAMHYTSDTSTAFSSVTHICRDVNYGWIIRYLHANGASMFFICLFMHIGRGLYYGSFTFLE--TWNIGI 82
Cdd:CHL00070  43 CFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRelTWVTGV 122


                 ..
gi 8650397    83 IL 84
Cdd:CHL00070 123 VL 124
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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