|
Name |
Accession |
Description |
Interval |
E-value |
| V-ATPase_V1_A |
TIGR01042 |
V-type (H+)-ATPase V1, A subunit; This models eukaryotic vacuolar (H+)-ATPase that is ... |
724-1314 |
0e+00 |
|
V-type (H+)-ATPase V1, A subunit; This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273411 [Multi-domain] Cd Length: 591 Bit Score: 1265.82 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 724 FGYVYAVSGPVVTAEKMAGSAMYELVRVGYYELVGEIIRLEGDMATIQVYEETSGVTVGDPVLRTGKPLSVELGPGILGS 803
Cdd:TIGR01042 2 YGYIYKVSGPVVVAENMAGAAMYELVRVGHDELVGEIIRLEGDKATIQVYEETSGLTVGDPVLRTGKPLSVELGPGILGN 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 804 IFDGIQRPLKDINELTNSIYIPKGVNVPALSRTASWEFNPHNIKNGSHITGGDMYGVVHENTLVKHWMILPPKCKGTVTY 883
Cdd:TIGR01042 82 IFDGIQRPLKAIAEQSQSIYIPRGVNVPALDRDKKWEFTPKKLRVGDHITGGDIYGTVFENSLIKHKIMLPPRARGTITY 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 884 VAPAGNYTVDDIVLETEFDGERQKYSMLQVWPVRQPRPVTEKLPANHPLLTGQRVLDSLFPCVQGGTTAIPGAFGCGKTV 963
Cdd:TIGR01042 162 IAPAGNYTVDDTVLEVEFQGVKKKFSMLQTWPVRSPRPVTEKLPANTPLLTGQRVLDALFPCVQGGTTAIPGAFGCGKTV 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 964 ISQALSKYSNSDVIVYVGCGERGNEMSEVLRDFPELTVEIEGVTESIMKRTALVANTSNMPVAAREASIYTGITLSEYFR 1043
Cdd:TIGR01042 242 ISQSLSKYSNSDAIVYVGCGERGNEMAEVLMDFPELTMEVDGREESIMKRTTLVANTSNMPVAAREASIYTGITLAEYFR 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 1044 DMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGSVSIVGAVSPPGGDFS 1123
Cdd:TIGR01042 322 DMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGSPEREGSVSIVGAVSPPGGDFS 401
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 1124 DPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYLRALDDFYDKNFPEFVPLRTKVKEILQEEEDLSEIVQLVGK 1203
Cdd:TIGR01042 402 DPVTSATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSKYMRALEEFYEKFYPEFVPLRTKAKEILQEEEDLNEIVQLVGK 481
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 1204 ASLAETDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMIAFYDMARHAVESTAQSDNKITWNVIRDSMGNIL 1283
Cdd:TIGR01042 482 DALAETDKITLEVAKLIKEDFLQQNGYTPYDRFCPFYKTVGMMRNMIAFYDLARQAVERTAQDDNKITWSIIKESLGDLL 561
|
570 580 590
....*....|....*....|....*....|.
gi 861634258 1284 YQLSSMKFKDPVkDGEAKIRSDFDQLHEDIQ 1314
Cdd:TIGR01042 562 YRLSSMKFEDPS-DGEAKIKADYEKLNEDMQ 591
|
|
| NtpA |
COG1155 |
Archaeal/vacuolar-type H+-ATPase catalytic subunit A/Vma1 [Energy production and conversion]; ... |
723-1320 |
0e+00 |
|
Archaeal/vacuolar-type H+-ATPase catalytic subunit A/Vma1 [Energy production and conversion]; Archaeal/vacuolar-type H+-ATPase catalytic subunit A/Vma1 is part of the Pathway/BioSystem: A/V-type ATP synthase
Pssm-ID: 440769 [Multi-domain] Cd Length: 583 Bit Score: 933.36 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 723 KFGYVYAVSGPVVTAEKMAGSAMYELVRVGYYELVGEIIRLEGDMATIQVYEETSGVTVGDPVLRTGKPLSVELGPGILG 802
Cdd:COG1155 3 TKGKIVKINGPLVTAEGMGGAKMYEVVYVGEERLIGEVIRIEGDKATIQVYEETSGLKPGEPVESTGEPLSVELGPGLLG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 803 SIFDGIQRPLKDINELTNSiYIPKGVNVPALSRTASWEFNPhNIKNGSHITGGDMYGVVHENTLVKHWMILPPKCKGTVT 882
Cdd:COG1155 83 NIFDGIQRPLDKIAEKSGD-FIPRGVDVPALDREKKWDFTP-TVKVGDKVSAGDILGTVQETPLIEHKIMVPPGVSGTVK 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 883 YVAPAGNYTVDDIV--LETEfDGERQKYSMLQVWPVRQPRPVTEKLPANHPLLTGQRVLDSLFPCVQGGTTAIPGAFGCG 960
Cdd:COG1155 161 EIAPEGEYTVEDTIavLEDE-DGEEHELTMYQKWPVRRPRPYKEKLPPSEPLITGQRVIDTFFPIAKGGTAAIPGPFGTG 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 961 KTVISQALSKYSNSDVIVYVGCGERGNEMSEVLRDFPELTVEIEGvtESIMKRTALVANTSNMPVAAREASIYTGITLSE 1040
Cdd:COG1155 240 KTVTQHQLAKWSDADIVVYVGCGERGNEMTEVLEEFPELIDPKTG--RPLMERTVLIANTSNMPVAAREASIYTGITIAE 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 1041 YFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPdrEGSVSIVGAVSPPGG 1120
Cdd:COG1155 318 YYRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLASRLAEFYERAGRVKTLGGE--EGSVTIIGAVSPPGG 395
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 1121 DFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYLRALDDFYDKNF-PEFVPLRTKVKEILQEEEDLSEIVQ 1199
Cdd:COG1155 396 DFSEPVTQNTLRIVKVFWALDASLAYARHYPAINWLTSYSLYLDDLAEWYDENVdPDWSELRNEAMDLLQEEAELQEIVR 475
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 1200 LVGKASLAETDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMIAFYDMARHAVESTAQSDnKITWNVIRDSM 1279
Cdd:COG1155 476 LVGEDALPDEDRLTLEVARLIREGFLQQNAFDDVDTYCPLEKQYKMLKLILTFYDKAFEALEKGVPLS-EIKELPLREKI 554
|
570 580 590 600
....*....|....*....|....*....|....*....|.
gi 861634258 1280 GNilyqlssMKFkDPVKDGEAKirsdFDQLHEDIQQAFRNL 1320
Cdd:COG1155 555 AR-------MKY-SPENELLEK----FDELEKEIDEEIEEL 583
|
|
| PRK04192 |
PRK04192 |
V-type ATP synthase subunit A; Provisional |
725-1309 |
0e+00 |
|
V-type ATP synthase subunit A; Provisional
Pssm-ID: 235248 [Multi-domain] Cd Length: 586 Bit Score: 907.62 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 725 GYVYAVSGPVVTAEKMAGSAMYELVRVGYYELVGEIIRLEGDMATIQVYEETSGVTVGDPVLRTGKPLSVELGPGILGSI 804
Cdd:PRK04192 5 GKIVRVSGPLVVAEGMGGARMYEVVRVGEEGLIGEIIRIEGDKATIQVYEETSGIKPGEPVEFTGEPLSVELGPGLLGSI 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 805 FDGIQRPLKDINELTnSIYIPKGVNVPALSRTASWEFNPHnIKNGSHITGGDMYGVVHENTLVKHWMILPPKCKGTVTYV 884
Cdd:PRK04192 85 FDGIQRPLDELAEKS-GDFLERGVYVPALDREKKWEFTPT-VKVGDKVEAGDILGTVQETPSIEHKIMVPPGVSGTVKEI 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 885 APAGNYTVDDIV--LETEfDGERQKYSMLQVWPVRQPRPVTEKLPANHPLLTGQRVLDSLFPCVQGGTTAIPGAFGCGKT 962
Cdd:PRK04192 163 VSEGDYTVDDTIavLEDE-DGEGVELTMMQKWPVRRPRPYKEKLPPVEPLITGQRVIDTFFPVAKGGTAAIPGPFGSGKT 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 963 VISQALSKYSNSDVIVYVGCGERGNEMSEVLRDFPELTVEIEGvtESIMKRTALVANTSNMPVAAREASIYTGITLSEYF 1042
Cdd:PRK04192 242 VTQHQLAKWADADIVIYVGCGERGNEMTEVLEEFPELIDPKTG--RPLMERTVLIANTSNMPVAAREASIYTGITIAEYY 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 1043 RDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPdrEGSVSIVGAVSPPGGDF 1122
Cdd:PRK04192 320 RDMGYDVLLMADSTSRWAEALREISGRLEEMPGEEGYPAYLASRLAEFYERAGRVKTLGGE--EGSVTIIGAVSPPGGDF 397
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 1123 SDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYLRALDDFYDKNF-PEFVPLRTKVKEILQEEEDLSEIVQLV 1201
Cdd:PRK04192 398 SEPVTQNTLRIVKVFWALDAELADRRHFPAINWLTSYSLYLDQVAPWWEENVdPDWRELRDEAMDLLQREAELQEIVRLV 477
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 1202 GKASLAETDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMIAFYDMARHAVESTAqSDNKITWNVIRDSMGN 1281
Cdd:PRK04192 478 GPDALPEEDRLILEVARLIREDFLQQNAFDPVDTYCPPEKQYEMLKLILTFYDEAFKALEKGV-PVSEILELEVRDRIAR 556
|
570 580
....*....|....*....|....*...
gi 861634258 1282 ILYQLSSMkFKDPVKDGEAKIRSDFDQL 1309
Cdd:PRK04192 557 LKYIPENE-YLEKIDEIFEKLEEELEEL 583
|
|
| ATP_syn_A_arch |
TIGR01043 |
ATP synthase archaeal, A subunit; Archaeal ATP synthase shares extensive sequence similarity ... |
725-1307 |
0e+00 |
|
ATP synthase archaeal, A subunit; Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases. [Energy metabolism, ATP-proton motive force interconversion]
Pssm-ID: 130115 [Multi-domain] Cd Length: 578 Bit Score: 827.06 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 725 GYVYAVSGPVVTAEKMAGSAMYELVRVGYYELVGEIIRLEGDMATIQVYEETSGVTVGDPVLRTGKPLSVELGPGILGSI 804
Cdd:TIGR01043 2 GRIIRVSGPLVVADGMKGAQMYEVVKVGEEGLIGEIIRIEGDKAFIQVYEETSGIKPGEPVVGTGAPLSVELGPGLLGSI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 805 FDGIQRPLKDINELTNSiYIPKGVNVPALSRTASWEFNPhNIKNGSHITGGDMYGVVHENTLVKHWMILPPKCKGTVTYV 884
Cdd:TIGR01043 82 YDGVQRPLDVLKEKTGD-FIARGVDAPGLDRDKKWHFKP-TVKEGDKVEGGDIIGVVPETSLIEHKILVPPNVEGEIVEI 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 885 APAGNYTVDDIVLETEFDGeRQKYSMLQVWPVRQPRPVTEKLPANHPLLTGQRVLDSLFPCVQGGTTAIPGAFGCGKTVI 964
Cdd:TIGR01043 160 AEEGDYTVEDTIAVVDTDG-DEEIKMYQKWPVRIPRPYKEKLPPEVPLITGQRILDTFFPIAKGGTAAIPGPFGSGKTVT 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 965 SQALSKYSNSDVIVYVGCGERGNEMSEVLRDFPELTVEIEGvtESIMKRTALVANTSNMPVAAREASIYTGITLSEYFRD 1044
Cdd:TIGR01043 239 QHQLAKWSDADIVVYIGCGERGNEMTDVLEEFPELKDPKTG--KPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRD 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 1045 MGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGSVSIVGAVSPPGGDFSD 1124
Cdd:TIGR01043 317 MGYDVALMADSTSRWAEAMREISGRLEEMPGEEGYPAYLASRLAEFYERAGRVKTLGGEERVGSVTVIGAVSPPGGDFSE 396
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 1125 PVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYLRALDDFYDKNF-PEFVPLRTKVKEILQEEEDLSEIVQLVGK 1203
Cdd:TIGR01043 397 PVTQNTLRIVKVFWALDADLAQRRHFPAINWLQSYSLYVDLVQDWWHENVdPDWREMRDEAMDLLQKESELQEIVQLVGP 476
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 1204 ASLAETDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMIAFYDMARHAVESTAQSDnKITWNVIRDSMGNIL 1283
Cdd:TIGR01043 477 DALPERQKLILEVARMIREAFLQQNAFDPVDTYCPPQKQYRILRAIMNFYDEAMEALERGVPVE-EILKLEVKEEIGRMK 555
|
570 580
....*....|....*....|....
gi 861634258 1284 YQLSSmKFKDPVKDGEAKIRSDFD 1307
Cdd:TIGR01043 556 YEPDN-DILAKIDEILEKIEKEFK 578
|
|
| V_A-ATPase_A |
cd01134 |
V/A-type ATP synthase catalytic subunit A; V/A-type ATP synthase catalytic subunit A. These ... |
791-1162 |
0e+00 |
|
V/A-type ATP synthase catalytic subunit A; V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. Vacuolar (V-type) ATPases play major roles in endomembrane and plasma membrane proton transport in eukaryotes. They are found in multiple intracellular membranes including vacuoles, endosomes, lysosomes, Golgi-derived vesicles, secretory vesicles, as well as the plasma membrane. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Pssm-ID: 410878 [Multi-domain] Cd Length: 288 Bit Score: 638.85 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 791 PLSVELGPGILGSIFDGIQRPLKDINElTNSIYIPKGVNVpalsrtaswefnphnikngshitggdmygvvhentlvkhw 870
Cdd:cd01134 1 PLSVELGPGLLGSIFDGIQRPLEVIAE-TGSIFIPRGVNV---------------------------------------- 39
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 871 milppkckgtvtyvapagnytvddivletefdgerqkysmlQVWPVRQPRPVTEKLPANHPLLTGQRVLDSLFPCVQGGT 950
Cdd:cd01134 40 -----------------------------------------QRWPVRQPRPVKEKLPPNVPLLTGQRVLDTLFPVAKGGT 78
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 951 TAIPGAFGCGKTVISQALSKYSNSDVIVYVGCGERGNEMSEVLRDFPELTVEIEGvtESIMKRTALVANTSNMPVAAREA 1030
Cdd:cd01134 79 AAIPGPFGCGKTVISQSLSKWSNSDVVIYVGCGERGNEMAEVLEEFPELKDPITG--ESLMERTVLIANTSNMPVAAREA 156
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 1031 SIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGSVS 1110
Cdd:cd01134 157 SIYTGITIAEYFRDMGYNVSLMADSTSRWAEALREISGRLEEMPAEEGYPAYLGARLAEFYERAGRVRCLGSPGREGSVT 236
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 861634258 1111 IVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKY 1162
Cdd:cd01134 237 IVGAVSPPGGDFSEPVTQATLRIVQVFWGLDKKLAQRRHFPSINWLISYSKY 288
|
|
| DUF4781 |
pfam16013 |
Domain of unknown function (DUF4781); This presumed domain is functionally uncharacterized. ... |
171-492 |
8.05e-119 |
|
Domain of unknown function (DUF4781); This presumed domain is functionally uncharacterized. This domain family is found in bacteria and eukaryotes, and is typically between 288 and 306 amino acids in length.
Pssm-ID: 435069 Cd Length: 308 Bit Score: 372.42 E-value: 8.05e-119
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 171 IPIFKIRRNIQKKSDIAKStkqkENTTKiepdyeiWYIDTCGRVYKSWKDYMEENNLPKCTMVLPKGGFYQAdlsyPITE 250
Cdd:pfam16013 1 HPVFRTRKCIKEKSSSTNS----SNCCM-------IYIDETGRVYDNWEDYVANNKLPKGTMVAPKDGIYTA----LSED 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 251 DYSTVWLEVIDSPACKWTAKISNGIDVVSNIAGI-STVAISVVSLFTPLAPAVAITGLVAASSSGIWTIGRSSQQLADRR 329
Cdd:pfam16013 66 EDGEVWLEFHTSPACRLKSKILNVLDIVSTVGGLvAGVPIGAAALATPVAAPILLAAGVVGVGSAAYSTGRSIQRLVDRS 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 330 NHEQSIHLMDKEALSHWFGIAGATFGLGALGGSVALAKTAASGKTIPTLAKAAFNTVQGGNLLLNGAGIVYQGYYIVDKY 409
Cdd:pfam16013 146 QHGQSISLTDREARNHWLGVAGGVVGLGAAGATAALSAAAAAGREVGQAAQLAVNGINISSIVISGTGVANGVYDLVLKV 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 410 RTDKTVNHRDALNLAIHIMFFAGAVVKVQFANDIIEGTQGKVINDYKDTLRKKNLRKKFNRVARKAAENNTCKITENAEV 489
Cdd:pfam16013 226 SDDQQLTALDVLQLSASLLFFTHSVINFKLASTIIRKAQNQKINDYRRTLRSNRSRKTFDKILRETAKLNGIKRSKKADI 305
|
...
gi 861634258 490 IQY 492
Cdd:pfam16013 306 IRD 308
|
|
| PRK14698 |
PRK14698 |
V-type ATP synthase subunit A; Provisional |
962-1318 |
2.46e-118 |
|
V-type ATP synthase subunit A; Provisional
Pssm-ID: 184795 [Multi-domain] Cd Length: 1017 Bit Score: 394.39 E-value: 2.46e-118
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 962 TVISQALSKYSNSDVIVYVGCGERGNEMSEVLRDFPELTVEIEGvtESIMKRTALVANTSNMPVAAREASIYTGITLSEY 1041
Cdd:PRK14698 670 TVTQHQLAKWSDAQVVIYIGCGERGNEMTDVLEEFPKLKDPKTG--KPLMERTVLIANTSNMPVAAREASIYTGITIAEY 747
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 1042 FRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPDREGSVSIVGAVSPPGGD 1121
Cdd:PRK14698 748 FRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGD 827
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 1122 FSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYLRALDDFYDKNF-PEFVPLRTKVKEILQEEEDLSEIVQL 1200
Cdd:PRK14698 828 FSEPVVQNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAVKDWWHKNVdPEWKAMRDKAMELLQKEAELQEIVRI 907
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 1201 VGKASLAETDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMIAFYDMARHAVeSTAQSDNKITWNVIRDSMG 1280
Cdd:PRK14698 908 VGPDALPERERAILLVARMLREDYLQQDAFDEVDTYCPPEKQVTMMRVLLNFYDKTMDAI-SRGVPLEEIAKLPVREEIG 986
|
330 340 350
....*....|....*....|....*....|....*...
gi 861634258 1281 NilyqlssMKFKDPVKdgeaKIRSDFDQLHEDIQQAFR 1318
Cdd:PRK14698 987 R-------MKFEPDIE----KIKALIDKTNEQFDELFK 1013
|
|
| ATP-synt_ab |
pfam00006 |
ATP synthase alpha/beta family, nucleotide-binding domain; This entry includes the ATP ... |
935-1160 |
8.69e-100 |
|
ATP synthase alpha/beta family, nucleotide-binding domain; This entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho.
Pssm-ID: 425417 [Multi-domain] Cd Length: 212 Bit Score: 316.61 E-value: 8.69e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 935 GQRVLDSLFPCVQGGTTAIPGAFGCGKTVISQALSKYSNSDVIVYVGCGERGNEMSEVLRDFPEltveiegvtESIMKRT 1014
Cdd:pfam00006 1 GIRAIDGLLPIGRGQRIGIFGGSGVGKTVLAGMIARQASADVVVYALIGERGREVREFIEELLG---------SGALKRT 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 1015 ALVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERA 1094
Cdd:pfam00006 72 VVVVATSDEPPLARYRAPYTALTIAEYFRDQGKDVLLIMDSLTRFAEALREISLALGEPPGREGYPPSVFSLLARLLERA 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 861634258 1095 GRVKclgnpDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYS 1160
Cdd:pfam00006 152 GRVK-----GKGGSITALPTVLVPGDDITDPIPDNTRSILDGQIVLSRDLAEKGHYPAIDVLASVS 212
|
|
| RecA-like_ion-translocating_ATPases |
cd19476 |
RecA-like domain of ion-translocating ATPases; RecA-like NTPases. This family includes the ... |
910-1162 |
5.36e-90 |
|
RecA-like domain of ion-translocating ATPases; RecA-like NTPases. This family includes the NTP-binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410884 [Multi-domain] Cd Length: 270 Bit Score: 292.05 E-value: 5.36e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 910 MLQVWPVRQPRP-VTEKLPANHPLLTGQRVLDSLFPCVQGGTTAIPGAFGCGKTVISQALSKYSNS---DVIVYVGCGER 985
Cdd:cd19476 28 TKQRRPIHLKAPnPIERLPPEEPLQTGIKVIDLLAPYGRGQKIGIFGGSGVGKTVLAMQLARNQAKahaGVVVFAGIGER 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 986 GNEMSEVLRDFPELTVeiegvtesiMKRTALVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALRE 1065
Cdd:cd19476 108 GREVNDLYEEFTKSGA---------MERTVVVANTANDPPGARMRVPYTGLTIAEYFRDNGQHVLLIIDDISRYAEALRE 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 1066 ISGRLAEMPADSGYPAYLGARLASFYERAGRVKclgnpDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLA 1145
Cdd:cd19476 179 MSALLGEPPGREGYPPYLFTKLATLYERAGKVK-----DGGGSITAIPAVSTPGDDLTDPIPDNTFAILDGQIVLSRELA 253
|
250
....*....|....*..
gi 861634258 1146 QRKHFPSINWLISYSKY 1162
Cdd:cd19476 254 RKGIYPAINVLDSTSRV 270
|
|
| PRK14698 |
PRK14698 |
V-type ATP synthase subunit A; Provisional |
725-963 |
2.88e-70 |
|
V-type ATP synthase subunit A; Provisional
Pssm-ID: 184795 [Multi-domain] Cd Length: 1017 Bit Score: 256.49 E-value: 2.88e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 725 GYVYAVSGPVVTAEKMAGSAMYELVRVGYYELVGEIIRLEGDMATIQVYEETSGVTVGDPVLRTGKPLSVELGPGILGSI 804
Cdd:PRK14698 5 GRIIRVTGPLVIADGMKGAKMYEVVRVGELGLIGEIIRLEGDKAVIQVYEETAGLKPGEPVEGTGSSLSVELGPGLLTSI 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 805 FDGIQRPLKDINELTNSiYIPKGVNVPALSRTASWEFNPhNIKNGSHITGGDMYGVVHENTLVKHWMILPPKCKGTVTYV 884
Cdd:PRK14698 85 YDGIQRPLEVIREKSGD-FIARGISAPALPRDKKWHFIP-KVKVGDKVVGGDIIGEVPETSIITHKIMVPPGIEGEIVEI 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 885 APAGNYTVDDIVLETEF-DGERQKYSMLQVWPVRQPRPVTEKLPANHPLLTGQRVLDSLFPCVQGGTTAIPGAFGCGKTV 963
Cdd:PRK14698 163 ADEGEYTIEEVIAKVKTpSGEIKELKMYQRWPVRVKRPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPGPFGSGKCV 242
|
|
| ATP-synt_ab_Xtn |
pfam16886 |
ATPsynthase alpha/beta subunit N-term extension; ATP-synt_ab_Xtn is an extension of the ... |
805-926 |
7.45e-62 |
|
ATPsynthase alpha/beta subunit N-term extension; ATP-synt_ab_Xtn is an extension of the alpha-beta catalytic subunit of VATA or V-type proton ATPase catalytic subunit at the N-terminal end. It is found from bacteria to humans, and was not modelled in family ATP-synt_ab, pfam00006.
Pssm-ID: 465299 [Multi-domain] Cd Length: 120 Bit Score: 206.48 E-value: 7.45e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 805 FDGIQRPLKDINELTNSiYIPKGVNVPALSRTASWEFNPhNIKNGSHITGGDMYGVVHENTLVKHWMILPPKCKGTVTYV 884
Cdd:pfam16886 1 FDGIQRPLEKIAEKSGS-FIPRGVDVPALDREKKWEFTP-TVKVGDKVSGGDILGTVQETSLIEHKIMVPPGVSGTVTEI 78
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 861634258 885 APAGNYTVDDIVLETEFDGERQKYSMLQVWPVRQPRPVTEKL 926
Cdd:pfam16886 79 APEGEYTVEDTIAEVEDEGKEKELTMMQKWPVRRPRPYKEKL 120
|
|
| ATP-synt_V_A-type_alpha_C |
cd18111 |
V/A-type ATP synthase catalytic subunit A (alpha), C-terminal domain; The alpha (A) subunit of ... |
1177-1282 |
8.88e-50 |
|
V/A-type ATP synthase catalytic subunit A (alpha), C-terminal domain; The alpha (A) subunit of the V1/A1 complex of V/A-type ATP synthases, C-terminal domain. The V- and A-type family of ATPases are composed of two linked multi-subunit complexes: the V1 and A1 complexes contain three copies each of the alpha and beta subunits that form the soluble catalytic core, which is involved in ATP synthesis/hydrolysis, and the Vo or Ao complex that forms the membrane-embedded proton pore. The A-ATP synthase (AoA1-ATPase) is found in archaea and functions like F-ATP synthase. Structurally, however, the A-ATP synthase is more closely related to the V-ATP synthase (vacuolar VoV1-ATPase), which is a proton-translocating ATPase responsible for acidification of eukaryotic intracellular compartments and for ATP synthesis in archaea and some eubacteria. Collectively, the V- and A-type synthases can function in both ATP synthesis and hydrolysis modes.
Pssm-ID: 349746 [Multi-domain] Cd Length: 105 Bit Score: 171.42 E-value: 8.88e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 1177 FVPLRTKVKEILQEEEDLSEIVQLVGKASLAETDKITLEVAKLLKDDFLQQNSYSPYDRFCPFYKTVGMLRNMIAFYDMA 1256
Cdd:cd18111 1 WVELRTEAMEILQEEAELQEIVQLVGPDALPEEDRLTLEVARMIREDFLQQNAFDEVDTYCPLEKQYKMLKLILTFYDKA 80
|
90 100
....*....|....*....|....*.
gi 861634258 1257 RHAVEStAQSDNKITWNVIRDSMGNI 1282
Cdd:cd18111 81 LEALEK-GVPLSKILELPVREKIARM 105
|
|
| fliI_yscN |
TIGR01026 |
ATPase, FliI/YscN family; This family of ATPases demonstrates extensive homology with ATP ... |
756-1234 |
1.27e-43 |
|
ATPase, FliI/YscN family; This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins. [Energy metabolism, ATP-proton motive force interconversion]
Pssm-ID: 273401 [Multi-domain] Cd Length: 440 Bit Score: 165.24 E-value: 1.27e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 756 LVGEIIRLEGDMATIQVYEETSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKdineltnsiyipkgvnvpalsr 835
Cdd:TIGR01026 59 LVAEVVGFNGEFVFLMPYEEVEGVRPGSKVLATGEGLSIKVGDGLLGRVLDGLGKPID---------------------- 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 836 taswefnphnikngshiTGGDMYGVVHENTLvkhwmILPPkckgtvtyvapagnytvddivletefdgerqkysmlqvwp 915
Cdd:TIGR01026 117 -----------------GKGKFLDNVETEGL-----ITAP---------------------------------------- 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 916 vrqPRPVtEKLPANHPLLTGQRVLDSLFPCVQGGTTAIPGAFGCGKTVISQALSKYSNSDVIVYVGCGERGNEmsevLRD 995
Cdd:TIGR01026 135 ---INPL-KRAPIREILSTGVRSIDGLLTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGRE----VRE 206
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 996 FPELTVEIEGvtesiMKRTALVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPA 1075
Cdd:TIGR01026 207 FIEHDLGEEG-----LKRSVVVVATSDQSPLLRLKGAYVATAIAEYFRDQGKDVLLLMDSVTRFAMAQREIGLAAGEPPA 281
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 1076 DSGYPAYLGARLASFYERAGRVKclgnpdrEGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINW 1155
Cdd:TIGR01026 282 TKGYTPSVFSTLPRLLERAGASG-------KGSITAFYTVLVEGDDMNEPIADSVRGILDGHIVLSRALAQRGHYPAIDV 354
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 1156 LISYSKYLRAL--DDFYDKnfpefvplRTKVKEIL---QEEEDLSEIvQLVGKASLAETDKITLEVAKLlkDDFLQQNSY 1230
Cdd:TIGR01026 355 LASISRLMTAIvsEEHRRA--------ARKFRELLskyKDNEDLIRI-GAYQRGSDRELDFAIAKYPKL--ERFLKQGIN 423
|
....
gi 861634258 1231 SPYD 1234
Cdd:TIGR01026 424 EKVN 427
|
|
| FliI |
COG1157 |
Flagellar biosynthesis/type III secretory pathway ATPase FliI [Cell motility, Intracellular ... |
709-1250 |
2.26e-42 |
|
Flagellar biosynthesis/type III secretory pathway ATPase FliI [Cell motility, Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440771 [Multi-domain] Cd Length: 433 Bit Score: 161.35 E-value: 2.26e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 709 NQSLAKIAHEEREGKFGYVYAVSGPVVTAEKMAGS--AMYELVRVGYYELVGEIIRLEGDMATIQVYEETSGVTVGDPVL 786
Cdd:COG1157 5 ARLLARLEELPPVRVSGRVTRVVGLLIEAVGPDASigELCEIETADGRPVLAEVVGFRGDRVLLMPLGDLEGISPGARVV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 787 RTGKPLSVELGPGILGSIFDGIQRPLKDINELTNSIYIP-KGVNVPALSRtaswefnphnikngshitggdmygvvhent 865
Cdd:COG1157 85 PTGRPLSVPVGDGLLGRVLDGLGRPLDGKGPLPGEERRPlDAPPPNPLER------------------------------ 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 866 lvkhwmilppkckgtvtyvapagnytvddivletefdgerqkysmlqvwpvrqpRPVTEklpanhPLLTGQRVLDSLFPC 945
Cdd:COG1157 135 ------------------------------------------------------ARITE------PLDTGVRAIDGLLTV 154
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 946 VQG---GTTAipGAfGCGKTVISQALSKYSNSDVIVyVG-CGERGNEmsevLRDFPELTVEIEGvtesiMKRTALVANTS 1021
Cdd:COG1157 155 GRGqriGIFA--GS-GVGKSTLLGMIARNTEADVNV-IAlIGERGRE----VREFIEDDLGEEG-----LARSVVVVATS 221
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 1022 NMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISgrLA--EMPADSGYPAYLGARLASFYERAGrvkc 1099
Cdd:COG1157 222 DEPPLMRLRAAYTATAIAEYFRDQGKNVLLLMDSLTRFAMAQREIG--LAagEPPATRGYPPSVFALLPRLLERAG---- 295
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 1100 lgnPDREGSVSIVGAVSPPGGDFSDPVTSATLGI-----VqvfwgLDKKLAQRKHFPSINWLISYSkylRALDDFYDknf 1174
Cdd:COG1157 296 ---NGGKGSITAFYTVLVEGDDMNDPIADAVRGIldghiV-----LSRKLAERGHYPAIDVLASIS---RVMPDIVS--- 361
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 1175 PEFVPLRTKVKEIL---QEEEDLseIvqLVG---KASLAETDK-ITLeVAKLlkDDFLQQnsysPYDRFCPFYKTVGMLR 1247
Cdd:COG1157 362 PEHRALARRLRRLLaryEENEDL--I--RIGayqPGSDPELDEaIAL-IPAI--EAFLRQ----GMDERVSFEESLAQLA 430
|
...
gi 861634258 1248 NMI 1250
Cdd:COG1157 431 ELL 433
|
|
| PRK06820 |
PRK06820 |
EscN/YscN/HrcN family type III secretion system ATPase; |
724-1246 |
2.43e-41 |
|
EscN/YscN/HrcN family type III secretion system ATPase;
Pssm-ID: 180712 [Multi-domain] Cd Length: 440 Bit Score: 158.44 E-value: 2.43e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 724 FGYVYAVsGPVVTAEKMAGSAMYELVRVGYYELVGEIIRLEGDMATIQVYEETSGVTVGDPVLRTGKPLSVELGPGILGS 803
Cdd:PRK06820 30 RGPIVEI-GPTLLRASLPGVAQGELCRIEPQGMLAEVVSIEQEMALLSPFASSDGLRCGQWVTPLGHMHQVQVGADLAGR 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 804 IFDGIQRPLkDINELTNSiyipkgvnvpalsrtaswefnphnikngshitggdmygvvhentlvkHWMILppkckgtvtY 883
Cdd:PRK06820 109 ILDGLGAPI-DGGPPLTG-----------------------------------------------QWREL---------D 131
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 884 VAPagnytvddivletefdgerqkysmlqvwpvrqPRPVTEKlPANHPLLTGQRVLDSLFPCVQGGTTAIPGAFGCGKTV 963
Cdd:PRK06820 132 CPP--------------------------------PSPLTRQ-PIEQMLTTGIRAIDGILSCGEGQRIGIFAAAGVGKST 178
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 964 ISQALSKYSNSDVIVYVGCGERGNEmsevLRDFPELTVeiegvTESIMKRTALVANTSNMPVAAREASIYTGITLSEYFR 1043
Cdd:PRK06820 179 LLGMLCADSAADVMVLALIGERGRE----VREFLEQVL-----TPEARARTVVVVATSDRPALERLKGLSTATTIAEYFR 249
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 1044 DMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGrvkclgnPDREGSVSIVGAVSPPGGDFS 1123
Cdd:PRK06820 250 DRGKKVLLMADSLTRYARAAREIGLAAGEPPAAGSFPPSVFANLPRLLERTG-------NSDRGSITAFYTVLVEGDDMN 322
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 1124 DPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSkylRALDDFYDknfPEFVPLRTKVKEILQEEEDLSEIVQlVGK 1203
Cdd:PRK06820 323 EPVADEVRSLLDGHIVLSRRLAGAGHYPAIDIAASVS---RIMPQIVS---AGQLAMAQKLRRMLACYQEIELLVR-VGE 395
|
490 500 510 520
....*....|....*....|....*....|....*....|....*
gi 861634258 1204 ASLAEtDKITLEVAKLLKD--DFLQQNsyspYDRFCPFYKTVGML 1246
Cdd:PRK06820 396 YQAGE-DLQADEALQRYPAicAFLQQD----HSETAHLETTLEHL 435
|
|
| ATPase_flagellum-secretory_path_III |
cd01136 |
Flagellum-specific ATPase/type III secretory pathway virulence-related protein; ... |
914-1161 |
1.49e-40 |
|
Flagellum-specific ATPase/type III secretory pathway virulence-related protein; Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton-driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Pssm-ID: 410880 [Multi-domain] Cd Length: 265 Bit Score: 151.17 E-value: 1.49e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 914 WPVRQPRP-VTEKLPANHPLLTGQRVLDSLFPCVQGGTTAIPGAFGCGKTVISQALSKYSNSDVIVYVGCGERGNEmsev 992
Cdd:cd01136 32 RPLIAAPPnPLKRAPIEQPLPTGVRAIDGLLTCGEGQRIGIFAGSGVGKSTLLGMIARNTDADVNVIALIGERGRE---- 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 993 LRDFPELTVEIEGvtesiMKRTALVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAE 1072
Cdd:cd01136 108 VREFIEKDLGEEG-----LKRSVLVVATSDESPLLRVRAAYTATAIAEYFRDQGKKVLLLMDSLTRFAMAQREVGLAAGE 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 1073 MPADSGYPAYLGARLASFYERAGrvkclgnPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPS 1152
Cdd:cd01136 183 PPTRRGYPPSVFALLPRLLERAG-------NGEKGSITAFYTVLVEGDDFNDPIADEVRSILDGHIVLSRRLAERGHYPA 255
|
....*....
gi 861634258 1153 INWLISYSK 1161
Cdd:cd01136 256 IDVLASISR 264
|
|
| ATP-synt_V_A-type_alpha_N |
cd18119 |
V/A-type ATP synthase catalytic subunit A (alpha), N-terminal domain; The alpha (A) subunit of ... |
724-790 |
8.10e-40 |
|
V/A-type ATP synthase catalytic subunit A (alpha), N-terminal domain; The alpha (A) subunit of the V1/A1 complexes of V/A-type ATP synthases, N-terminal domain. The V- and A-type family of ATPases are composed of two linked multi-subunit complexes: the V1 or A1 complex contain three copies each of the alpha and beta subunits that form the soluble catalytic core, which is involved in ATP synthesis/hydrolysis, and the Vo or Ao complex that forms the membrane-embedded proton pore. The A-ATP synthase (AoA1-ATPase) is found in archaea and functions like F-ATP synthase. Structurally, however, the A-ATP synthase is more closely related to the V-ATP synthase (vacuolar VoV1-ATPase), which is a proton-translocating ATPase responsible for acidification of eukaryotic intracellular compartments and for ATP synthesis in archaea and some eubacteria. Collectively, the V- and A-type synthases can function in both ATP synthesis and hydrolysis modes.
Pssm-ID: 349743 [Multi-domain] Cd Length: 67 Bit Score: 141.51 E-value: 8.10e-40
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 861634258 724 FGYVYAVSGPVVTAEKMAGSAMYELVRVGYYELVGEIIRLEGDMATIQVYEETSGVTVGDPVLRTGK 790
Cdd:cd18119 1 KGKIYRVSGPVVVAEGMSGAAMYELVRVGEEGLIGEIIRLEGDKATIQVYEETSGLKVGEPVERTGK 67
|
|
| PRK06936 |
PRK06936 |
EscN/YscN/HrcN family type III secretion system ATPase; |
914-1251 |
2.48e-36 |
|
EscN/YscN/HrcN family type III secretion system ATPase;
Pssm-ID: 180762 [Multi-domain] Cd Length: 439 Bit Score: 143.74 E-value: 2.48e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 914 WPVRQ--PRPVTEKLpANHPLLTGQRVLDSLFPCVQGGTTAIPGAFGCGKTVISQALSKYSNSDVIVYVGCGERGNEmse 991
Cdd:PRK06936 127 YPVYAdaPAPMSRRL-IETPLSLGVRVIDGLLTCGEGQRMGIFAAAGGGKSTLLASLIRSAEVDVTVLALIGERGRE--- 202
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 992 vLRDFPELTVEIEGvtesiMKRTALVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLA 1071
Cdd:PRK06936 203 -VREFIESDLGEEG-----LRKAVLVVATSDRPSMERAKAGFVATSIAEYFRDQGKRVLLLMDSVTRFARAQREIGLAAG 276
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 1072 EMPADSGYPAYLGARLASFYERAGrvkclgnPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFP 1151
Cdd:PRK06936 277 EPPTRRGYPPSVFAALPRLMERAG-------QSDKGSITALYTVLVEGDDMTEPVADETRSILDGHIILSRKLAAANHYP 349
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 1152 SINWLISYSKYLRALDDfydknfPEFVPLRTKVKEILQEEEDLSEIVQL--VGKASLAETDKITLEVAKLlkDDFLQQNS 1229
Cdd:PRK06936 350 AIDVLRSASRVMNQIVS------KEHKTWAGRLRELLAKYEEVELLLQIgeYQKGQDKEADQAIERIGAI--RGFLRQGT 421
|
330 340
....*....|....*....|..
gi 861634258 1230 YSPydrfCPFYKTVGMLRNMIA 1251
Cdd:PRK06936 422 HEL----SHFNETLNLLETLTQ 439
|
|
| FliI_clade1 |
TIGR03496 |
flagellar protein export ATPase FliI; Members of this protein family are the FliI protein of ... |
758-1228 |
2.39e-35 |
|
flagellar protein export ATPase FliI; Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. [Cellular processes, Chemotaxis and motility]
Pssm-ID: 274607 [Multi-domain] Cd Length: 411 Bit Score: 140.30 E-value: 2.39e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 758 GEIIRLEGDMATIQVYEETSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTNSIYIP-KGVNVPALSRt 836
Cdd:TIGR03496 36 AEVVGFRGDRVLLMPLEDVEGLRPGARVFPLGGPLRLPVGDSLLGRVIDGLGRPLDGKGPLDAGERVPlYAPPINPLKR- 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 837 aswefnphnikngshitggdmygvvhentlvkhwmilppkckgtvtyvapagnytvddivletefdgerqkysmlqvwpv 916
Cdd:TIGR03496 --------------------------------------------------------------------------------
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 917 rqpRPVTEklpanhPLLTGQRVLDSLFPCVQGGTTAIPGAFGCGKTVISQALSKYSNSDVIVyVG-CGERGNEmsevLRD 995
Cdd:TIGR03496 115 ---APIDE------PLDVGVRAINGLLTVGRGQRMGIFAGSGVGKSTLLGMMARYTEADVVV-VGlIGERGRE----VKE 180
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 996 FPELTVEIEGvtesiMKRTALVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPA 1075
Cdd:TIGR03496 181 FIEDILGEEG-----LARSVVVAATADESPLMRLRAAFYATAIAEYFRDQGKDVLLLMDSLTRFAMAQREIALAIGEPPA 255
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 1076 DSGYPAYLGARLASFYERAGrvkclgnPDREGSVSIVG--AVSPPGGDFSDPVTSATLGIVQvfwG---LDKKLAQRKHF 1150
Cdd:TIGR03496 256 TKGYPPSVFAKLPQLVERAG-------NGEEGKGSITAfyTVLVEGDDQQDPIADAARAILD---GhivLSRELAEQGHY 325
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 1151 PSINWLISYSkylRALDDFYDknfPEFVPLRTKVKEIL---QEEEDLseIvqLVG---KASLAETDK-ITLeVAKLlkDD 1223
Cdd:TIGR03496 326 PAIDILASIS---RVMPDVVS---PEHRQAARRFKQLLsryQENRDL--I--SIGayqAGSDPELDQaIAL-YPRI--EA 392
|
....*
gi 861634258 1224 FLQQN 1228
Cdd:TIGR03496 393 FLQQG 397
|
|
| PRK08149 |
PRK08149 |
FliI/YscN family ATPase; |
919-1251 |
5.65e-35 |
|
FliI/YscN family ATPase;
Pssm-ID: 236166 [Multi-domain] Cd Length: 428 Bit Score: 139.36 E-value: 5.65e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 919 PRPVTEKLPANHPLLTGQRVLDSLFPCVQGGTTAIPGAFGCGKTVISQALSKYSNSDVIVYVGCGERGNEMSEVlrdfpe 998
Cdd:PRK08149 122 PPSYAERRPIREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEF------ 195
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 999 ltveIEGVTESIMK-RTALVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADS 1077
Cdd:PRK08149 196 ----VESLRASSRReKCVLVYATSDFSSVDRCNAALVATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALAAGELPARR 271
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 1078 GYPAYLGARLASFYERAGRVKclgnpdrEGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLI 1157
Cdd:PRK08149 272 GYPASVFDSLPRLLERPGATL-------AGSITAFYTVLLESEEEPDPIGDEIRSILDGHIYLSRKLAAKGHYPAIDVLK 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 1158 SYSkylRALDDFYDKNFPEfvpLRTKVKEILQEEEDLSEIVQLvGKASL---AETDKITLEVAKLlkDDFLQQnsysPYD 1234
Cdd:PRK08149 345 SVS---RVFGQVTDPKHRQ---LAAAFRKLLTRLEELQLFIDL-GEYRRgenADNDRAMDKRPAL--EAFLKQ----DVA 411
|
330
....*....|....*..
gi 861634258 1235 RFCPFYKTVGMLRNMIA 1251
Cdd:PRK08149 412 EKSSFSDTLERLNEFAA 428
|
|
| fliI |
PRK07721 |
flagellar protein export ATPase FliI; |
773-1197 |
2.53e-34 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 181092 [Multi-domain] Cd Length: 438 Bit Score: 137.93 E-value: 2.53e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 773 YEETSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLkDINELtnsiyiPKGV-NVPAlsrtaswEFNPHNikngsh 851
Cdd:PRK07721 72 YTEVAEIAPGCLVEATGKPLEVKVGSGLIGQVLDALGEPL-DGSAL------PKGLaPVST-------DQDPPN------ 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 852 itggdmygvvhentlvkhwmilppkckgtvtyvapagnytvddivletefdgerqkysmlqvwPVRQPrpvteklPANHP 931
Cdd:PRK07721 132 ---------------------------------------------------------------PLKRP-------PIREP 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 932 LLTGQRVLDSLFPCVQGGTTAIPGAFGCGKTVISQALSKYSNSDVIVYVGCGERGNEmsevLRDFPELTVEIEGvtesiM 1011
Cdd:PRK07721 142 MEVGVRAIDSLLTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGRE----VREFIERDLGPEG-----L 212
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 1012 KRTALVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFY 1091
Cdd:PRK07721 213 KRSIVVVATSDQPALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAILPKLL 292
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 1092 ERAGrvkclgnPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSkylRALDDFYD 1171
Cdd:PRK07721 293 ERTG-------TNASGSITAFYTVLVDGDDMNEPIADTVRGILDGHFVLDRQLANKGQYPAINVLKSVS---RVMNHIVS 362
|
410 420
....*....|....*....|....*....
gi 861634258 1172 knfPEFVPLRTKVKEIL---QEEEDLSEI 1197
Cdd:PRK07721 363 ---PEHKEAANRFRELLstyQNSEDLINI 388
|
|
| fliI |
PRK08927 |
flagellar protein export ATPase FliI; |
918-1228 |
2.99e-34 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 236351 [Multi-domain] Cd Length: 442 Bit Score: 137.80 E-value: 2.99e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 918 QPRPVTEKLPANH-------PLLTGQRVLDSLFPCVQGGTTAIPGAFGCGKTVISQALSKYSNSDVIVYVGCGERGNEMS 990
Cdd:PRK08927 121 VPYPLRAPPPPAHsrarvgePLDLGVRALNTFLTCCRGQRMGIFAGSGVGKSVLLSMLARNADADVSVIGLIGERGREVQ 200
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 991 EVLRDfpelTVEIEGvtesiMKRTALVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRL 1070
Cdd:PRK08927 201 EFLQD----DLGPEG-----LARSVVVVATSDEPALMRRQAAYLTLAIAEYFRDQGKDVLCLMDSVTRFAMAQREIGLSA 271
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 1071 AEMPADSGYPAYLGARLASFYERAGrvkclgnPDREGSVSIVG--AVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRK 1148
Cdd:PRK08927 272 GEPPTTKGYTPTVFAELPRLLERAG-------PGPIGEGTITGlfTVLVDGDDHNEPVADAVRGILDGHIVMERAIAERG 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 1149 HFPSINWLISYSkylRALDDFYDknfPEFVPLRTKVKEILQEEEDLSEIVQLvgKASLAETDKITLEVAKLLKD--DFLQ 1226
Cdd:PRK08927 345 RYPAINVLKSVS---RTMPGCND---PEENPLVRRARQLMATYADMEELIRL--GAYRAGSDPEVDEAIRLNPAleAFLR 416
|
..
gi 861634258 1227 QN 1228
Cdd:PRK08927 417 QG 418
|
|
| PRK07594 |
PRK07594 |
EscN/YscN/HrcN family type III secretion system ATPase; |
723-1200 |
7.28e-33 |
|
EscN/YscN/HrcN family type III secretion system ATPase;
Pssm-ID: 136438 [Multi-domain] Cd Length: 433 Bit Score: 133.15 E-value: 7.28e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 723 KFGYVYAVSGPVVTAeKMAGSAMYELVRVGYYELVGEIIRLEGDMATIQVYEETSGVTVGDPVLRTGKPLSVELGPGILG 802
Cdd:PRK07594 21 RWGRIQDVSATLLNA-WLPGVFMGELCCIKPGEELAEVVGINGSKALLSPFTSTIGLHCGQQVMALRRRHQVPVGEALLG 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 803 SIFDGIQRPLKDineltnsiyipkgvnvpalsrtaswefnphnikngshitggdmygvvhentlvkhwMILPPKCkgtvt 882
Cdd:PRK07594 100 RVIDGFGRPLDG--------------------------------------------------------RELPDVC----- 118
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 883 yvapagnytvddivlETEFDGerqkysmlqvwpvrQPRPVTEKLPANHPLLTGQRVLDSLFPCVQGGTTAIPGAFGCGKT 962
Cdd:PRK07594 119 ---------------WKDYDA--------------MPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKS 169
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 963 VISQALSKYSNSDVIVYVGCGERGNEmsevLRDFPELTVeiegvTESIMKRTALVANTSNMPVAAREASIYTGITLSEYF 1042
Cdd:PRK07594 170 TLLAMLCNAPDADSNVLVLIGERGRE----VREFIDFTL-----SEETRKRCVIVVATSDRPALERVRALFVATTIAEFF 240
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 1043 RDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGrvkcLGNpdrEGSVSIVGAVSPPGGDF 1122
Cdd:PRK07594 241 RDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG----MGE---KGSITAFYTVLVEGDDM 313
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 861634258 1123 SDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYLRALDDfydknfPEFVPLRTKVKEILQEEEDLSEIVQL 1200
Cdd:PRK07594 314 NEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTS------HEHRQLAAILRRCLALYQEVELLIRI 385
|
|
| PRK09099 |
PRK09099 |
type III secretion system ATPase; Provisional |
710-1251 |
1.99e-29 |
|
type III secretion system ATPase; Provisional
Pssm-ID: 169656 [Multi-domain] Cd Length: 441 Bit Score: 123.34 E-value: 1.99e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 710 QSLAKIAHEEREGKfgyVYAVSGPVVtaeKMAG--SAMYEL--VRVGYYELV--GEIIRLEGDMATIQVYEETSGVTVGD 783
Cdd:PRK09099 14 RELAALPAVRRTGK---VVEVIGTLL---RVSGldVTLGELceLRQRDGTLLqrAEVVGFSRDVALLSPFGELGGLSRGT 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 784 PVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTNSIYIPkgvnvpalsrtaswefnphnikngshitggdmygvvhe 863
Cdd:PRK09099 88 RVIGLGRPLSVPVGPALLGRVIDGLGEPIDGGGPLDCDELVP-------------------------------------- 129
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 864 ntlvkhwmilppkckgtvTYVAPagnytvddivletefdgerqkysmlqvwpvrqPRPVTEKLpANHPLLTGQRVLDSLF 943
Cdd:PRK09099 130 ------------------VIAAP--------------------------------PDPMSRRM-VEAPLPTGVRIVDGLM 158
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 944 PCVQGGTTAIPGAFGCGKTVISQALSKYSNSDVIVYVGCGERGNEmsevLRDFPELTVEIEGvtesiMKRTALVANTSNM 1023
Cdd:PRK09099 159 TLGEGQRMGIFAPAGVGKSTLMGMFARGTQCDVNVIALIGERGRE----VREFIELILGEDG-----MARSVVVCATSDR 229
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 1024 PVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRvkclgnp 1103
Cdd:PRK09099 230 SSIERAKAAYVATAIAEYFRDRGLRVLLMMDSLTRFARAQREIGLAAGEPPARRGFPPSVFAELPRLLERAGM------- 302
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 1104 DREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYLRALDDfydknfPEFVPLRTK 1183
Cdd:PRK09099 303 GETGSITALYTVLAEDESGSDPIAEEVRGILDGHMILSREIAARNQYPAIDVLGSLSRVMPQVVP------REHVQAAGR 376
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 861634258 1184 VKEILQEEEDLSEIVQL---------VGKASLAETDKItlevakllkDDFLQQnsysPYDRFCPFYKTVGMLRNMIA 1251
Cdd:PRK09099 377 LRQLLAKHREVETLLQVgeyragsdpVADEAIAKIDAI---------RDFLSQ----RTDEYSDPDATLAALAELSG 440
|
|
| NtpB |
COG1156 |
Archaeal/vacuolar-type H+-ATPase subunit B/Vma2 [Energy production and conversion]; Archaeal ... |
730-1227 |
6.40e-29 |
|
Archaeal/vacuolar-type H+-ATPase subunit B/Vma2 [Energy production and conversion]; Archaeal/vacuolar-type H+-ATPase subunit B/Vma2 is part of the Pathway/BioSystem: A/V-type ATP synthase
Pssm-ID: 440770 [Multi-domain] Cd Length: 462 Bit Score: 122.18 E-value: 6.40e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 730 VSGPVVTAEKMAGSAMYELVRVgyyEL------VGEIIRLEGDMATIQVYEETSGVTVGDPVLR-TGKPLSVELGPGILG 802
Cdd:COG1156 12 IAGPLLFVEGVEGVGYGELVEI---ELpdgerrRGQVLEVSEDKAVVQVFEGTTGLSLKNTKVRfLGEPLELPVSEDMLG 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 803 SIFDGIQRPLKDINEltnsIYIPKGVNV------PAlSRTASWEFnphnIKNG-SHITGgdMygvvheNTLV---Khwmi 872
Cdd:COG1156 89 RVFNGLGRPIDGGPP----IIPEKRLDIngspinPV-AREYPREF----IQTGiSAIDG--L------NTLVrgqK---- 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 873 LPpkckgtvtyvapagnytvddIvleteFDGErqkysmlqvwpvrqprpvteKLPANhpLLTGQrvldslfpcvqggtta 952
Cdd:COG1156 148 LP--------------------I-----FSGS--------------------GLPHN--ELAAQ---------------- 164
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 953 ipgafgcgktVISQALSKYSNSD-VIVYVGCGERGNEMSEVLRDFPELTVeiegvtesiMKRTALVANTSNMPVAAREAS 1031
Cdd:COG1156 165 ----------IARQAKVRGEEEKfAVVFAAMGITHDEANFFREEFEETGA---------LDRVVMFLNLADDPAIERIIT 225
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 1032 IYTGITLSEYFR-DMGYNV-SMMADSTSrWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKclgnpDREGSV 1109
Cdd:COG1156 226 PRMALTAAEYLAfEKGMHVlVILTDMTN-YCEALREISAAREEVPGRRGYPGYMYSDLASLYERAGRIK-----GRKGSI 299
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 1110 SIVGAVSPPGGDFSDPVTSATLGIV--QVFwgLDKKLAQRKHFPSINWLISYSK---------YLRAlD--DFYDKNFPE 1176
Cdd:COG1156 300 TQIPILTMPNDDITHPIPDLTGYITegQIV--LSRDLHRKGIYPPIDVLPSLSRlmkdgigegKTRE-DhaDVANQLYAA 376
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|.
gi 861634258 1177 FvplrTKVKeilqeeeDLSEIVQLVGKASLAETDKITLEVAKLLKDDFLQQ 1227
Cdd:COG1156 377 Y----ARGQ-------EVRELAAIVGEEALSETDKKYLKFADAFERRFVNQ 416
|
|
| PRK04196 |
PRK04196 |
V-type ATP synthase subunit B; Provisional |
727-1230 |
1.53e-28 |
|
V-type ATP synthase subunit B; Provisional
Pssm-ID: 235251 [Multi-domain] Cd Length: 460 Bit Score: 120.70 E-value: 1.53e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 727 VYAVSGPVVTAEKMAGSAMYELVRVGYY---ELVGEIIRLEGDMATIQVYEETSGVTVGDPVLR-TGKPLSVELGPGILG 802
Cdd:PRK04196 7 VSEIKGPLLFVEGVEGVAYGEIVEIELPngeKRRGQVLEVSEDKAVVQVFEGTTGLDLKDTKVRfTGEPLKLPVSEDMLG 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 803 SIFDGIQRPLKDINELTNSIYIPkgVNVPAL---SRTASWEFnphnIKNG-SHITGgdMygvvheNTLVKhwmilppkck 878
Cdd:PRK04196 87 RIFDGLGRPIDGGPEIIPEKRLD--INGAPInpvAREYPEEF----IQTGiSAIDG--L------NTLVR---------- 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 879 gtvtyvapagnytvddivletefdGerQKYsmlqvwpvrqprPV--TEKLPANhpLLTGQrvldslfpcvqggttaipga 956
Cdd:PRK04196 143 ------------------------G--QKL------------PIfsGSGLPHN--ELAAQ-------------------- 162
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 957 fgcgktVISQALSKYSNSD-VIVYVGCGERGNEMSEVLRDFPEltveiEGVtesiMKRTALVANTSNMPVAAREASIYTG 1035
Cdd:PRK04196 163 ------IARQAKVLGEEENfAVVFAAMGITFEEANFFMEDFEE-----TGA----LERSVVFLNLADDPAIERILTPRMA 227
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 1036 ITLSEYFR-DMGYNV-SMMADSTSrWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKclgnpDREGSVSIVG 1113
Cdd:PRK04196 228 LTAAEYLAfEKGMHVlVILTDMTN-YCEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRIK-----GKKGSITQIP 301
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 1114 AVSPPGGDFSDPVTSATLGIV--QVFwgLDKKLAQRKHFPSINWLISYSkylRALDDFYDKNFPefvplRTKVKEILQ-- 1189
Cdd:PRK04196 302 ILTMPDDDITHPIPDLTGYITegQIV--LSRELHRKGIYPPIDVLPSLS---RLMKDGIGEGKT-----REDHKDVANql 371
|
490 500 510 520
....*....|....*....|....*....|....*....|....*.
gi 861634258 1190 -----EEEDLSEIVQLVGKASLAETDKITLEVAKLLKDDFLQQNSY 1230
Cdd:PRK04196 372 yaayaRGKDLRELAAIVGEEALSERDRKYLKFADAFEREFVNQGFD 417
|
|
| fliI |
PRK08972 |
flagellar protein export ATPase FliI; |
920-1234 |
2.53e-27 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 181599 [Multi-domain] Cd Length: 444 Bit Score: 117.11 E-value: 2.53e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 920 RPVTEklpanhPLLTGQRVLDSLFPCVQGGTTAIPGAFGCGKTVISQALSKYSNSDVIVyVG-CGERGNEMSEvlrdFPE 998
Cdd:PRK08972 140 RPITE------PLDVGVRAINAMLTVGKGQRMGLFAGSGVGKSVLLGMMTRGTTADVIV-VGlVGERGREVKE----FIE 208
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 999 ltvEIEGVTESimKRTALVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSG 1078
Cdd:PRK08972 209 ---EILGEEGR--ARSVVVAAPADTSPLMRLKGCETATTIAEYFRDQGLNVLLLMDSLTRYAQAQREIALAVGEPPATKG 283
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 1079 YPAYLGARLASFYERAGRvkclGNPDrEGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLIS 1158
Cdd:PRK08972 284 YPPSVFAKLPALVERAGN----GGPG-QGSITAFYTVLTEGDDLQDPIADASRAILDGHIVLSRELADSGHYPAIDIEAS 358
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 1159 YSKYLRALDDfydknfPEFVPLRTKVKEIL---QEEEDLSEIvqlvgKASLAETDK-----ITLEVAkllKDDFLQQ--N 1228
Cdd:PRK08972 359 ISRVMPMVIS------EEHLEAMRRVKQVYslyQQNRDLISI-----GAYKQGSDPridnaIRLQPA---MNAFLQQtmK 424
|
....*.
gi 861634258 1229 SYSPYD 1234
Cdd:PRK08972 425 EAVPYD 430
|
|
| F1-ATPase_beta_CD |
cd01133 |
F1 ATP synthase beta subunit, central domain; The F-ATPase is found in bacterial plasma ... |
912-1163 |
1.73e-26 |
|
F1 ATP synthase beta subunit, central domain; The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The mitochondrial extrinsic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic. Alpha and beta subunits form the globular catalytic moiety, a hexameric ring of alternating alpha and beta subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton-translocating domain.
Pssm-ID: 410877 [Multi-domain] Cd Length: 277 Bit Score: 110.77 E-value: 1.73e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 912 QVWPV-RQPRPVTEKLPANHPLLTGQRVLDSLFPCVQGGTTAIPGAFGCGKTVISQAL----SKySNSDVIVYVGCGERG 986
Cdd:cd01133 30 ERWPIhREAPEFVELSTEQEILETGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELinniAK-AHGGYSVFAGVGERT 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 987 NEMSEVLRDFPELTVEIEGVtesiMKRTALVANTSNMPVAAREASIYTGITLSEYFRDM-GYNVSMMADSTSRWAEALRE 1065
Cdd:cd01133 109 REGNDLYHEMKESGVINLDG----LSKVALVYGQMNEPPGARARVALTGLTMAEYFRDEeGQDVLLFIDNIFRFTQAGSE 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 1066 ISGRLAEMPADSGYPAYLGARLASFYERAGRVKclgnpdrEGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLA 1145
Cdd:cd01133 185 VSALLGRIPSAVGYQPTLATEMGSLQERITSTK-------KGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRGIA 257
|
250
....*....|....*...
gi 861634258 1146 QRKHFPSINWLISYSKYL 1163
Cdd:cd01133 258 ELGIYPAVDPLDSTSRIL 275
|
|
| fliI |
PRK05688 |
flagellar protein export ATPase FliI; |
927-1227 |
4.48e-26 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 168181 [Multi-domain] Cd Length: 451 Bit Score: 113.29 E-value: 4.48e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 927 PANHPLLTGQRVLDSLFPCVQGGTTAIPGAFGCGKTVISQALSKYSNSDVIVYVGCGERGNEMSEVLRDfpeltveIEGv 1006
Cdd:PRK05688 147 PISEPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLLGMMTRFTEADIIVVGLIGERGREVKEFIEH-------ILG- 218
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 1007 tESIMKRTALVANTSN-MPVAAREASIYTgITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGA 1085
Cdd:PRK05688 219 -EEGLKRSVVVASPADdAPLMRLRAAMYC-TRIAEYFRDKGKNVLLLMDSLTRFAQAQREIALAIGEPPATKGYPPSVFA 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 1086 RLASFYERAgrvkclGNPDR-EGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYLR 1164
Cdd:PRK05688 297 KLPKLVERA------GNAEPgGGSITAFYTVLSEGDDQQDPIADSARGVLDGHIVLSRRLAEEGHYPAIDIEASISRVMP 370
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 861634258 1165 ALDDfydknfPEFVPLRTKVKEIL---QEEEDLSEIVQLVgKASLAETDKITLEVAKLLKddFLQQ 1227
Cdd:PRK05688 371 QVVD------PEHLRRAQRFKQLWsryQQSRDLISVGAYV-AGGDPETDLAIARFPHLVQ--FLRQ 427
|
|
| fliI |
PRK07196 |
flagellar protein export ATPase FliI; |
918-1251 |
1.10e-25 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 180875 [Multi-domain] Cd Length: 434 Bit Score: 111.91 E-value: 1.10e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 918 QPRPVT--EKLPANHPLLTGQRVLDSLFPCVQGGTTAIPGAFGCGKTVISQALSKYSNSDVIVYVGCGERGNEmsevLRD 995
Cdd:PRK07196 123 QLPQIHplQRRAVDTPLDVGVNAINGLLTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGRE----VKE 198
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 996 FPELTVEIEGVTESIMkrtaLVANTSNMPVAAREASIYTGiTLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPA 1075
Cdd:PRK07196 199 FIEHSLQAAGMAKSVV----VAAPADESPLMRIKATELCH-AIATYYRDKGHDVLLLVDSLTRYAMAQREIALSLGEPPA 273
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 1076 DSGYPAYLGARLASFYERAgrvkclGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINW 1155
Cdd:PRK07196 274 TKGYPPSAFSIIPRLAESA------GNSSGNGTMTAIYTVLAEGDDQQDPIVDCARAVLDGHIVLSRKLAEAGHYPAIDI 347
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 1156 LISYSKYLRALDDfydknfPEFVPLRTKVKEILQEEEDLSEIVQLVGKASLAE--TDKITLEVAKLlkDDFLQQNSYSPy 1233
Cdd:PRK07196 348 SQSISRCMSQVIG------SQQAKAASLLKQCYADYMAIKPLIPLGGYVAGADpmADQAVHYYPAI--TQFLRQEVGHP- 418
|
330
....*....|....*...
gi 861634258 1234 drfCPFYKTVGMLRNMIA 1251
Cdd:PRK07196 419 ---ALFSASVEQLTGMFP 433
|
|
| fliI |
PRK06002 |
flagellar protein export ATPase FliI; |
930-1251 |
1.21e-25 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 235666 [Multi-domain] Cd Length: 450 Bit Score: 112.01 E-value: 1.21e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 930 HPLLTGQRVLDSLFPCVQGGTTAIPGAFGCGKTVISQALSKYSNSDVIVYVGCGERGNEmsevLRDFpeltveIEGVTES 1009
Cdd:PRK06002 147 TGLRTGVRVIDIFTPLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGRE----VREF------LEDTLAD 216
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 1010 IMKRTALVANTSN-MPVAAREASIyTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLA 1088
Cdd:PRK06002 217 NLKKAVAVVATSDeSPMMRRLAPL-TATAIAEYFRDRGENVLLIVDSVTRFAHAAREVALAAGEPPVARGYPPSVFSELP 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 1089 SFYERAGrvkclgnPDREGSVSIVG--AVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKylral 1166
Cdd:PRK06002 296 RLLERAG-------PGAEGGGSITGifSVLVDGDDHNDPVADSIRGTLDGHIVLDRAIAEQGRYPAVDPLASISR----- 363
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 1167 ddFYDKNF-PEFVPLRTKVKEILQEEEDLSEIvQLVG---KASLAETDKITLEVAKLLkdDFLQQnsySPYDRFC--PFY 1240
Cdd:PRK06002 364 --LARHAWtPEQRKLVSRLKSMIARFEETRDL-RLIGgyrAGSDPDLDQAVDLVPRIY--EALRQ---SPGDPPSddAFA 435
|
330
....*....|.
gi 861634258 1241 KTVGMLRNMIA 1251
Cdd:PRK06002 436 DLAAALKGAAQ 446
|
|
| fliI |
PRK07960 |
flagellum-specific ATP synthase FliI; |
924-1168 |
3.10e-23 |
|
flagellum-specific ATP synthase FliI;
Pssm-ID: 181182 [Multi-domain] Cd Length: 455 Bit Score: 104.87 E-value: 3.10e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 924 EKLPANHPLLTGQRVLDSLFPCVQGGTTAIPGAFGCGKTVISQALSKYSNSDVIVYVGCGERGNEmsevLRDFPELTVEI 1003
Cdd:PRK07960 151 QRTPIEHVLDTGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGRE----VKDFIENILGA 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 1004 EGVTESIMkrTALVANTSNMpVAAREASIYTGItlSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYL 1083
Cdd:PRK07960 227 EGRARSVV--IAAPADVSPL-LRMQGAAYATRI--AEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSV 301
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 1084 GARLASFYERAGrvkclGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYL 1163
Cdd:PRK07960 302 FAKLPALVERAG-----NGISGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAM 376
|
....*
gi 861634258 1164 RALDD 1168
Cdd:PRK07960 377 TALID 381
|
|
| V_A-ATPase_B |
cd01135 |
V/A-type ATP synthase subunit B; V/A-type ATP synthase (non-catalytic) subunit B. These ... |
966-1161 |
3.71e-21 |
|
V/A-type ATP synthase subunit B; V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. Vacuolar (V-type) ATPases play major roles in endomembrane and plasma membrane proton transport in eukaryotes. They are found in multiple intracellular membranes including vacuoles, endosomes, lysosomes, Golgi-derived vesicles, secretory vesicles, as well as the plasma membrane. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Pssm-ID: 410879 [Multi-domain] Cd Length: 282 Bit Score: 94.98 E-value: 3.71e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 966 QA-LSKYSNSDVIVYVGCGERGNEMSEVLRDFPELTVeiegvtesiMKRTALVANTSNMPVAAReasIYT---GITLSEY 1041
Cdd:cd01135 92 QAgVVGSEENFAIVFAAMGVTMEEARFFKDDFEETGA---------LERVVLFLNLANDPTIER---IITprmALTTAEY 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 1042 FR-DMGYNV-SMMADSTSrWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKclgnpDREGSVSIVGAVSPPG 1119
Cdd:cd01135 160 LAyEKGKHVlVILTDMTN-YAEALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRVE-----GRKGSITQIPILTMPN 233
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 861634258 1120 GDFSDPVTSATLGIV--QVFwgLDKKLAQRKHFPSINWLISYSK 1161
Cdd:cd01135 234 DDITHPIPDLTGYITegQIY--LDRDLHNKGIYPPIDVLPSLSR 275
|
|
| atpB |
CHL00060 |
ATP synthase CF1 beta subunit |
934-1227 |
5.09e-21 |
|
ATP synthase CF1 beta subunit
Pssm-ID: 214349 [Multi-domain] Cd Length: 494 Bit Score: 98.19 E-value: 5.09e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 934 TGQRVLDSLFPCVQGGTTAIPGAFGCGKTVISQAL----SKySNSDVIVYVGCGER---GN----EMSE--VLRDfpelt 1000
Cdd:CHL00060 147 TGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELinniAK-AHGGVSVFGGVGERtreGNdlymEMKEsgVINE----- 220
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 1001 veiEGVTESimkRTALVANTSNMPVAAREASIYTGITLSEYFRDMGY-NVSMMADSTSRWAEALREISGRLAEMPADSGY 1079
Cdd:CHL00060 221 ---QNIAES---KVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNKqDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGY 294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 1080 PAYLGARLASFYERAGRVKclgnpdrEGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISY 1159
Cdd:CHL00060 295 QPTLSTEMGSLQERITSTK-------EGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDST 367
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 861634258 1160 SKYLRalddfydknfPEFV-----PLRTKVKEILQEEEDLSEIVQLVGKASLAETDKITleVAKLLK-DDFLQQ 1227
Cdd:CHL00060 368 STMLQ----------PRIVgeehyETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLT--VARARKiERFLSQ 429
|
|
| fliI |
PRK06793 |
flagellar protein export ATPase FliI; |
884-1192 |
1.26e-19 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 180696 [Multi-domain] Cd Length: 432 Bit Score: 93.50 E-value: 1.26e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 884 VAPAGNYTVDDIVLET-EFDGERQKYSMLQVWPVRQPrPVT--EKLPANHPLLTGQRVLDSLFPCVQGGTTAIPGAFGCG 960
Cdd:PRK06793 90 VIPRGNHLLGKVLSANgEVLNEEAENIPLQKIKLDAP-PIHafEREEITDVFETGIKSIDSMLTIGIGQKIGIFAGSGVG 168
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 961 KTVISQALSKYSNSDVIVYVGCGERGNEMSEVLRdfpeltveiEGVTESIMKRTALVANTSNMP--VAAREASIYTGItl 1038
Cdd:PRK06793 169 KSTLLGMIAKNAKADINVISLVGERGREVKDFIR---------KELGEEGMRKSVVVVATSDEShlMQLRAAKLATSI-- 237
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 1039 SEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPAdSGYPAYLGARLASFYERAGRVKclgnpdrEGSVSIVGAVSPP 1118
Cdd:PRK06793 238 AEYFRDQGNNVLLMMDSVTRFADARRSVDIAVKELPI-GGKTLLMESYMKKLLERSGKTQ-------KGSITGIYTVLVD 309
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 861634258 1119 GGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSkylRALDDFYDKNFPEFVPLRTKVKEILQEEE 1192
Cdd:PRK06793 310 GDDLNGPVPDLARGILDGHIVLKRELATLSHYPAISVLDSVS---RIMEEIVSPNHWQLANEMRKILSIYKENE 380
|
|
| fliI |
PRK08472 |
flagellar protein export ATPase FliI; |
916-1251 |
1.92e-19 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 181439 [Multi-domain] Cd Length: 434 Bit Score: 92.83 E-value: 1.92e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 916 VRQPRPVTEKLPANHPLLTGQRVLDSLFPCVQGGTTAIPGAFGCGKTVISQALSKYSNSDVIVYVGCGERGnemsevlRD 995
Cdd:PRK08472 125 MKAPIAAMKRGLIDEVFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLMGMIVKGCLAPIKVVALIGERG-------RE 197
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 996 FPELtveIEGVTESIMKRTALVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPA 1075
Cdd:PRK08472 198 IPEF---IEKNLGGDLENTVIVVATSDDSPLMRKYGAFCAMSVAEYFKNQGLDVLFIMDSVTRFAMAQREIGLALGEPPT 274
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 1076 DSGYPAYLGARLASFYERAgrvkclGNPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINW 1155
Cdd:PRK08472 275 SKGYPPSVLSLLPQLMERA------GKEEGKGSITAFFTVLVEGDDMSDPIADQSRSILDGHIVLSRELTDFGIYPPINI 348
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 1156 LISYSkylRALDDFYDK----NFPEFVPLRTKVKEilqeeedlSEIVQLVGkASLAETDKiTLEVA---KLLKDDFLQQN 1228
Cdd:PRK08472 349 LNSAS---RVMNDIISPehklAARKFKRLYSLLKE--------NEVLIRIG-AYQKGNDK-ELDEAiskKEFMEQFLKQN 415
|
330 340
....*....|....*....|...
gi 861634258 1229 SYSPYdrfcPFYKTVGMLRNMIA 1251
Cdd:PRK08472 416 PNELF----PFEQTFEQLEEILR 434
|
|
| PRK05922 |
PRK05922 |
type III secretion system ATPase; Validated |
919-1246 |
3.85e-19 |
|
type III secretion system ATPase; Validated
Pssm-ID: 102061 [Multi-domain] Cd Length: 434 Bit Score: 91.89 E-value: 3.85e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 919 PRPVTEKlPANHPLLTGQRVLDSLFPCVQGGTTAIPGAFGCGKTVISQALSKYSNSDVIVYVGCGERGNEmsevLRDFPE 998
Cdd:PRK05922 129 PSPMSRQ-PIQEIFPTGIKAIDAFLTLGKGQRIGVFSEPGSGKSSLLSTIAKGSKSTINVIALIGERGRE----VREYIE 203
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 999 LtvEIEGVTEsimKRTALVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSG 1078
Cdd:PRK05922 204 Q--HKEGLAA---QRTIIIASPAHETAPTKVIAGRAAMTIAEYFRDQGHRVLFIMDSLSRWIAALQEVALARGETLSAHH 278
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 1079 YPAYLGARLASFYERAgrvkclGNPDReGSVSIVGAV--SPPGGD-FSDPVTSATLGivQVFWGldkklAQRKHF--PSI 1153
Cdd:PRK05922 279 YAASVFHHVSEFTERA------GNNDK-GSITALYAIlhYPNHPDiFTDYLKSLLDG--HFFLT-----PQGKALasPPI 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 1154 NWLISYSKYLRALddfydkNFPEFVPLRTKVKEILQEEEDLSEIVQLvgKASLAETDKITLEVAKLLKD--DFLQQnsys 1231
Cdd:PRK05922 345 DILTSLSRSARQL------ALPHHYAAAEELRSLLKAYHEALDIIQL--GAYVPGQDAHLDRAVKLLPSikQFLSQ---- 412
|
330
....*....|....*
gi 861634258 1232 PYDRFCPFYKTVGML 1246
Cdd:PRK05922 413 PLSSYCALHNTLKQL 427
|
|
| PRK13343 |
PRK13343 |
F0F1 ATP synthase subunit alpha; Provisional |
702-1097 |
9.69e-17 |
|
F0F1 ATP synthase subunit alpha; Provisional
Pssm-ID: 183987 [Multi-domain] Cd Length: 502 Bit Score: 84.97 E-value: 9.69e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 702 NQVFKMTNQSLAKIAHEEREGKFGYVYAVSGPVVTAEKMAGSAMYELVRV--GYYelvGEIIRLEGDMATIQVYEETSGV 779
Cdd:PRK13343 6 DEWLARIRQRIARYEPQPDAREIGRVESVGDGIAFVSGLPDAALDELLRFegGSR---GFAFNLEEELVGAVLLDDTADI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 780 TVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTNSIYIPkgVNVPAlsrtaswefnphnikngshitggdmyg 859
Cdd:PRK13343 83 LAGTEVRRTGRVLEVPVGDGLLGRVIDPLGRPLDGGGPLQATARRP--LERPA--------------------------- 133
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 860 vvhentlvkhwmilppkckgtvtyvaPAgnytvddIVletefdgERQkysmlqvwpvrqprPVTEklpanhPLLTGQRVL 939
Cdd:PRK13343 134 --------------------------PA-------II-------ERD--------------FVTE------PLQTGIKVV 153
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 940 DSLFPCVQGGTTAIPGAFGCGKT------VISQalskySNSDVI-VYVGCGERGNEMSEVLRdfpelTVEIEGVtesiMK 1012
Cdd:PRK13343 154 DALIPIGRGQRELIIGDRQTGKTaiaidaIINQ-----KDSDVIcVYVAIGQKASAVARVIE-----TLREHGA----LE 219
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 1013 RTALVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPA---YLGARLas 1089
Cdd:PRK13343 220 YTTVVVAEASDPPGLQYLAPFAGCAIAEYFRDQGQDALIVYDDLSKHAAAYRELSLLLRRPPGREAYPGdifYLHSRL-- 297
|
....*...
gi 861634258 1090 fYERAGRV 1097
Cdd:PRK13343 298 -LERAAKL 304
|
|
| V-ATPase_V1_B |
TIGR01040 |
V-type (H+)-ATPase V1, B subunit; This models eukaryotic vacuolar (H+)-ATPase that is ... |
1011-1165 |
1.86e-15 |
|
V-type (H+)-ATPase V1, B subunit; This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273410 [Multi-domain] Cd Length: 466 Bit Score: 80.54 E-value: 1.86e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 1011 MKRTALVANTSNMPVAAREASIYTGITLSEYFR-DMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLAS 1089
Cdd:TIGR01040 210 MERVCLFLNLANDPTIERIITPRLALTTAEYLAyQCEKHVLVILTDMSSYADALREVSAAREEVPGRRGFPGYMYTDLAT 289
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 861634258 1090 FYERAGRVKclgnpDREGSVSIVGAVSPPGGDFSDPVTSATLGIV--QVFwgLDKKLAQRKHFPSINWLISYSKYLRA 1165
Cdd:TIGR01040 290 IYERAGRVE-----GRNGSITQIPILTMPNDDITHPIPDLTGYITegQIY--VDRQLHNRQIYPPINVLPSLSRLMKS 360
|
|
| ATP-synt_ab_N |
pfam02874 |
ATP synthase alpha/beta family, beta-barrel domain; This family includes the ATP synthase ... |
727-789 |
6.69e-15 |
|
ATP synthase alpha/beta family, beta-barrel domain; This family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella.
Pssm-ID: 427029 [Multi-domain] Cd Length: 69 Bit Score: 70.65 E-value: 6.69e-15
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 861634258 727 VYAVSGPVVTAEKMAGSA--MYELVRVGYYE----LVGEIIRLEGDMATIQVYEETSGVTVGDPVLRTG 789
Cdd:pfam02874 1 IVQVIGPVVDVEFGIGRLpgLLNALEVELVEfgslVLGEVLNLGGDKVRVQVFGGTSGLSRGDEVKRTG 69
|
|
| F1-ATPase_alpha_CD |
cd01132 |
F1 ATP synthase alpha subunit, central domain; The F-ATPase is found in bacterial plasma ... |
915-1161 |
3.53e-14 |
|
F1 ATP synthase alpha subunit, central domain; The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The mitochondrial extrinsic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic. Alpha and beta subunits form the globular catalytic moiety, a hexameric ring of alternating alpha and beta subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton-translocating domain.
Pssm-ID: 410876 [Multi-domain] Cd Length: 274 Bit Score: 74.52 E-value: 3.53e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 915 PVRQPRP-VTEKLPANHPLLTGQRVLDSLFPCVQGGTTAIPGAFGCGKT------VISQalskySNSDVI-VYVGCGERG 986
Cdd:cd01132 35 RVESKAPgIIPRQSVNEPLQTGIKAIDSLIPIGRGQRELIIGDRQTGKTaiaidtIINQ-----KGKKVYcIYVAIGQKR 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 987 NEMSEVLRdfpelTVEIEGVtesiMKRTALVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREI 1066
Cdd:cd01132 110 STVAQIVK-----TLEEHGA----MEYTIVVAATASDPAPLQYLAPYAGCAMGEYFRDNGKHALIIYDDLSKQAVAYRQM 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 1067 SGRLAEMPADSGYPA---YLGARLasfYERAGRvkcLGNPDREGSVSIVGAVSPPGGDFSD--P--VTSATLGivQVFwg 1139
Cdd:cd01132 181 SLLLRRPPGREAYPGdvfYLHSRL---LERAAK---LSDELGGGSLTALPIIETQAGDVSAyiPtnVISITDG--QIF-- 250
|
250 260
....*....|....*....|..
gi 861634258 1140 LDKKLAQRKHFPSINWLISYSK 1161
Cdd:cd01132 251 LESELFNKGIRPAINVGLSVSR 272
|
|
| atpA |
CHL00059 |
ATP synthase CF1 alpha subunit |
920-1161 |
2.44e-12 |
|
ATP synthase CF1 alpha subunit
Pssm-ID: 176999 [Multi-domain] Cd Length: 485 Bit Score: 70.76 E-value: 2.44e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 920 RPVTEklpanhPLLTGQRVLDSLFPCVQGGTTAIPGAFGCGKTVIsqALSKYSN---SDVI-VYVGCGERGNEMSEVLRD 995
Cdd:CHL00059 119 RSVYE------PLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAV--ATDTILNqkgQNVIcVYVAIGQKASSVAQVVTT 190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 996 FPEltveiegvtESIMKRTALVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPA 1075
Cdd:CHL00059 191 LQE---------RGAMEYTIVVAETADSPATLQYLAPYTGAALAEYFMYRGRHTLIIYDDLSKQAQAYRQMSLLLRRPPG 261
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 1076 DSGYPA---YLGARLasfYERAGRvkcLGNPDREGSVSIVGAVSPPGGDFSD--P--VTSATLGivQVFwgLDKKLAQRK 1148
Cdd:CHL00059 262 REAYPGdvfYLHSRL---LERAAK---LSSQLGEGSMTALPIVETQAGDVSAyiPtnVISITDG--QIF--LSADLFNAG 331
|
250
....*....|...
gi 861634258 1149 HFPSINWLISYSK 1161
Cdd:CHL00059 332 IRPAINVGISVSR 344
|
|
| PTZ00185 |
PTZ00185 |
ATPase alpha subunit; Provisional |
922-1161 |
8.15e-12 |
|
ATPase alpha subunit; Provisional
Pssm-ID: 140212 [Multi-domain] Cd Length: 574 Bit Score: 69.68 E-value: 8.15e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 922 VTEKLPANHPLLTGQRVLDSLFPCVQGGTTAIPGAFGCGKTVIS------------QALSKysNSDVIVYVGCGERGNEM 989
Cdd:PTZ00185 163 IVSRSPVNYNLLTGFKAVDTMIPIGRGQRELIVGDRQTGKTSIAvstiinqvrinqQILSK--NAVISIYVSIGQRCSNV 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 990 SEVLRDFPeltveiegvTESIMKRTALVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGR 1069
Cdd:PTZ00185 241 ARIHRLLR---------SYGALRYTTVMAATAAEPAGLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSKQAVAYRQISLL 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 1070 LAEMPADSGYPA---YLGARLasfYERAGRVkclgNPDR-EGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLA 1145
Cdd:PTZ00185 312 LRRPPGREAYPGdvfYLHSRL---LERAAML----SPGKgGGSVTALPIVETLSNDVTAYIVTNVISITDGQIYLDTKLF 384
|
250
....*....|....*.
gi 861634258 1146 QRKHFPSINWLISYSK 1161
Cdd:PTZ00185 385 TGGQRPAVNIGLSVSR 400
|
|
| ATP-synt_F1_V1_A1_AB_FliI_N |
cd01426 |
ATP synthase, alpha/beta subunits of F1/V1/A1 complex, flagellum-specific ATPase FliI, ... |
725-790 |
6.00e-11 |
|
ATP synthase, alpha/beta subunits of F1/V1/A1 complex, flagellum-specific ATPase FliI, N-terminal domain; The alpha and beta (or A and B) subunits are primarily found in the F1, V1, and A1 complexes of the F-, V- and A-type family of ATPases with rotary motors. These ion-transporting rotary ATPases are composed of two linked multi-subunit complexes: the F1, V1, or A1 complex which contains three copies each of the alpha and beta subunits that form the soluble catalytic core involved in ATP synthesis/hydrolysis, and the Fo, Vo, or Ao complex which forms the membrane-embedded proton pore. The F-ATP synthases (also called FoF1-ATPases) are found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts, or in the plasma membranes of bacteria. F-ATPases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis. The A-ATP synthases (AoA1-ATPases), a different class of proton-translocating ATP synthases, are found in archaea and function like F-ATP synthases. Structurally, however, the A-ATP synthases are more closely related to the V-ATP synthases (vacuolar VoV1-ATPases), which are a proton-translocating ATPase responsible for acidification of eukaryotic intracellular compartments and for ATP synthesis in archaea and some eubacteria. Collectively, F-, V-, and A-type synthases can function in both ATP synthesis and hydrolysis modes. This family also includes the flagellum-specific ATPase/type III secretory pathway virulence-related protein, which shows extensive similarity to the alpha and beta subunits of F1-ATP synthase.
Pssm-ID: 349738 [Multi-domain] Cd Length: 73 Bit Score: 59.63 E-value: 6.00e-11
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 861634258 725 GYVYAVSGPVVTAEKMAGSAMYELVRVG------YYELVGEIIRLEGDMATIQVYEETSGVTVGDPVLRTGK 790
Cdd:cd01426 2 GRVIRVNGPLVEAELEGEVAIGEVCEIErgdgnnETVLKAEVIGFRGDRAILQLFESTRGLSRGALVEPTGR 73
|
|
| PRK02118 |
PRK02118 |
V-type ATP synthase subunit B; Provisional |
751-1130 |
2.02e-10 |
|
V-type ATP synthase subunit B; Provisional
Pssm-ID: 179373 [Multi-domain] Cd Length: 436 Bit Score: 64.67 E-value: 2.02e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 751 VGYYELV----------GEIIRLEGDMATIQVYEETSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPlkdineltn 820
Cdd:PRK02118 23 VGYGELAtverkdgsslAQVIRLDGDKVTLQVFGGTRGISTGDEVVFLGRPMQVTYSESLLGRRFNGSGKP--------- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 821 siyipkgvnvpalsrtaswefnphnikngshITGGdmygvvhentlvkhwmilpPKCKGtvtyvapagnytvDDIvlete 900
Cdd:PRK02118 94 -------------------------------IDGG-------------------PELEG-------------EPI----- 105
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 901 fdgerqkysmlqvwPVRQP--RPVTEKLPANHpLLTGQRVLDsLFPCVqggttaipgafgcgktVISQALSKYSNS---- 974
Cdd:PRK02118 106 --------------EIGGPsvNPVKRIVPREM-IRTGIPMID-VFNTL----------------VESQKIPIFSVSgepy 153
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 975 -------------DVIVYVGCGERGNEMSEVLRDFPELTVeiegvtesiMKRTALVANTSNMPVAAREASIYTGITLSEY 1041
Cdd:PRK02118 154 nallarialqaeaDIIILGGMGLTFDDYLFFKDTFENAGA---------LDRTVMFIHTASDPPVECLLVPDMALAVAEK 224
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 1042 FR-DMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVkclgnPDrEGSVSIVGAVSPPGG 1120
Cdd:PRK02118 225 FAlEGKKKVLVLLTDMTNFADALKEISITMDQIPSNRGYPGSLYSDLASRYEKAVDF-----ED-GGSITIIAVTTMPGD 298
|
410
....*....|
gi 861634258 1121 DFSDPVTSAT 1130
Cdd:PRK02118 299 DVTHPVPDNT 308
|
|
| ATP-synt_F1_V1_A1_AB_FliI_C |
cd01429 |
ATP synthase, alpha/beta subunits of F1/V1/A1 complex, flagellum-specific ATPase FliI, ... |
1183-1247 |
6.11e-07 |
|
ATP synthase, alpha/beta subunits of F1/V1/A1 complex, flagellum-specific ATPase FliI, C-terminal domain; The alpha and beta (also called A and B) subunits are primarily found in the F1, V1, and A1 complexes of F-, V- and A-type family of ATPases with rotary motors. These ion-transporting rotary ATPases are composed of two linked multi-subunit complexes: the F1, V1, and A1 complexes contain three copies each of the alpha and beta subunits that form the soluble catalytic core, which is involved in ATP synthesis/hydrolysis, and the Fo, Vo, or Ao complex that forms the membrane-embedded proton pore. The F-ATP synthases (also called FoF1-ATPases) are found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts, or in the plasma membranes of bacteria. F-ATPases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis. The A-ATP synthases (AoA1-ATPases), a different class of proton-translocating ATP synthases, are found in archaea and function like F-ATP synthases. Structurally, however, the A-ATP synthases are more closely related to the V-ATP synthases (vacuolar VoV1-ATPases), which are a proton-translocating ATPase responsible for acidification of eukaryotic intracellular compartments and for ATP synthesis in archaea and some eubacteria. Collectively, F-, V-, and A-type synthases can function in both ATP synthesis and hydrolysis modes. This family also includes the flagellum-specific ATPase/type III secretory pathway virulence-related protein, which shows extensive similarity to the alpha and beta subunits of F1-ATP synthase.
Pssm-ID: 349744 [Multi-domain] Cd Length: 70 Bit Score: 48.21 E-value: 6.11e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 861634258 1183 KVKEILQEEEDLSEIVQLVGKASLAETDKITLEVAKLLKdDFLQQNSYSPYdrfcPFYKTVGMLR 1247
Cdd:cd01429 7 GFKAILAQYRELRDIVAIVGDDALSEADKKTLSRGRRLE-EFLQQGQFEPE----TIEDTLEKLY 66
|
|
| PRK09281 |
PRK09281 |
F0F1 ATP synthase subunit alpha; Validated |
917-1097 |
2.03e-06 |
|
F0F1 ATP synthase subunit alpha; Validated
Pssm-ID: 236448 [Multi-domain] Cd Length: 502 Bit Score: 51.99 E-value: 2.03e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 917 RQPrpVTEklpanhPLLTGQRVLDSLFPCVQG-----------GTTAIpgafgCGKTVISQalskySNSDVI-VYVGCGE 984
Cdd:PRK09281 139 RKS--VHE------PLQTGIKAIDAMIPIGRGqreliigdrqtGKTAI-----AIDTIINQ-----KGKDVIcIYVAIGQ 200
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 985 RGNEMSEVLRdfpelTVEIEGVtesiMKRTALVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALR 1064
Cdd:PRK09281 201 KASTVAQVVR-----KLEEHGA----MEYTIVVAATASDPAPLQYLAPYAGCAMGEYFMDNGKDALIVYDDLSKQAVAYR 271
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 861634258 1065 EIS-------GRLAempadsgYPA---YLGARLasfYERAGRV 1097
Cdd:PRK09281 272 QLSlllrrppGREA-------YPGdvfYLHSRL---LERAAKL 304
|
|
| ATP-synt_V_A-type_beta_N |
cd18118 |
V/A-type ATP synthase beta (B) subunit, N-terminal domain; The beta (B) subunit of the V1/A1 ... |
730-790 |
1.52e-05 |
|
V/A-type ATP synthase beta (B) subunit, N-terminal domain; The beta (B) subunit of the V1/A1 complexes of V/A-type ATP synthases, N-terminal domain. The V- and A-type family of ATPases are composed of two linked multi-subunit complexes: the V1 or A1 complex which contains three copies each of the alpha and beta subunits that form the soluble catalytic core, that is involved in ATP synthesis/hydrolysis, and the Vo or Ao complex which forms the membrane-embedded proton pore. The A-ATP synthase (AoA1-ATPase) is found in archaea and functions like F-ATP synthase. Structurally, however, the A-ATP synthase is more closely related to the V-ATP synthase (vacuolar VoV1-ATPase), which is a proton-translocating ATPase responsible for acidification of eukaryotic intracellular compartments and for ATP synthesis in archaea and some eubacteria. Collectively, the V- and A-type synthases can function in both ATP synthesis and hydrolysis modes. This subfamily consists of the non-catalytic beta subunit.
Pssm-ID: 349742 [Multi-domain] Cd Length: 72 Bit Score: 43.96 E-value: 1.52e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 861634258 730 VSGPVVTAEKMAGsamyelvrVGYYELV-----------GEIIRLEGDMATIQVYEETSGVTVGDPVLR-TGK 790
Cdd:cd18118 8 INGPLVIVEGVKG--------VKYGEIVeitlpdgevrrGQVLEVSGDKAVVQVFEGTSGLDLKGTKVRfTGE 72
|
|
| PHA02732 |
PHA02732 |
hypothetical protein; Provisional |
237-430 |
7.74e-04 |
|
hypothetical protein; Provisional
Pssm-ID: 165099 [Multi-domain] Cd Length: 1467 Bit Score: 43.97 E-value: 7.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 237 GGFYQADLSYPITEDYSTVWLEVIDSPACKWTAKISNGIDVVSNiagistVAISVVSLFTPLAPAVAITGLVAASSSGIW 316
Cdd:PHA02732 752 GTIYLAAFPYPISYDVFTSPAPFTSVPSTVITPTFSKATLPLTN------VSIQQLSLFTSAGPIISSSQAMVIPNIGAW 825
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861634258 317 TIGRS----SQQLAdrrnheQSIHLMDKEALSHWFGIAGATFGLGALGGSVALAKTAASGKTIPTLAKAAFNTV-----Q 387
Cdd:PHA02732 826 SGNTPlflfPQMAV------QEGIPTFGLVLPVWYYVSLGTGTIGVSLVQVPMILGNKLFAFLPEVESTSWGSLpkpywE 899
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 861634258 388 GGNLLLNGAGIVYQGYYIVDKYRTDKTvnhrdALNLAIHIMFF 430
Cdd:PHA02732 900 GGLLVLDGSAAAAPGQYIAWRFMPSSN-----TLNVTIHITSF 937
|
|
| |
