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zinc finger CCCH domain-containing protein 8 [Mus musculus]
zinc finger CCCH domain-containing protein( domain architecture ID 708395)
zinc finger CCCH domain-containing protein similar to cleavage and polyadenylation specificity factor (CPSF) subunit 4, which is part of the complex that plays a key role in pre-mRNA 3'-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A) polymerase and other factors to bring about cleavage and poly(A) addition
List of domain hits
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Name | Accession | Description | Interval | E-value | |||
YTH1 super family | cl25862 | Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin ... |
210-282 | 3.79e-05 | |||
Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]; The actual alignment was detected with superfamily member COG5084: Pssm-ID: 227416 [Multi-domain] Cd Length: 285 Bit Score: 44.48 E-value: 3.79e-05
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Name | Accession | Description | Interval | E-value | |||
YTH1 | COG5084 | Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin ... |
210-282 | 3.79e-05 | |||
Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]; Pssm-ID: 227416 [Multi-domain] Cd Length: 285 Bit Score: 44.48 E-value: 3.79e-05
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zf_CCCH_4 | pfam18345 | Zinc finger domain; This is a zinc finger domain found in Zinc finger CCCH-type with G patch ... |
240-258 | 6.15e-05 | |||
Zinc finger domain; This is a zinc finger domain found in Zinc finger CCCH-type with G patch domain-containing proteins such as ZIP. Functional studies indicate that ZIP specifically targets EGFR and represses its transcription, and that the zinc finger and the coiled-coil domains are central to that process. Pssm-ID: 465719 [Multi-domain] Cd Length: 19 Bit Score: 39.32 E-value: 6.15e-05
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ZnF_C3H1 | smart00356 | zinc finger; |
240-260 | 2.11e-03 | |||
zinc finger; Pssm-ID: 214632 [Multi-domain] Cd Length: 27 Bit Score: 34.91 E-value: 2.11e-03
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Name | Accession | Description | Interval | E-value | |||
YTH1 | COG5084 | Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin ... |
210-282 | 3.79e-05 | |||
Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]; Pssm-ID: 227416 [Multi-domain] Cd Length: 285 Bit Score: 44.48 E-value: 3.79e-05
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zf_CCCH_4 | pfam18345 | Zinc finger domain; This is a zinc finger domain found in Zinc finger CCCH-type with G patch ... |
240-258 | 6.15e-05 | |||
Zinc finger domain; This is a zinc finger domain found in Zinc finger CCCH-type with G patch domain-containing proteins such as ZIP. Functional studies indicate that ZIP specifically targets EGFR and represses its transcription, and that the zinc finger and the coiled-coil domains are central to that process. Pssm-ID: 465719 [Multi-domain] Cd Length: 19 Bit Score: 39.32 E-value: 6.15e-05
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zf-CCCH_3 | pfam15663 | Zinc-finger containing family; zf-CCCH_3 family is found in eukaryotes, and is typically ... |
204-283 | 4.67e-04 | |||
Zinc-finger containing family; zf-CCCH_3 family is found in eukaryotes, and is typically between 155 and 169 amino acids in length. Pssm-ID: 464787 [Multi-domain] Cd Length: 110 Bit Score: 38.98 E-value: 4.67e-04
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zf-CCCH_3 | pfam15663 | Zinc-finger containing family; zf-CCCH_3 family is found in eukaryotes, and is typically ... |
233-292 | 6.76e-04 | |||
Zinc-finger containing family; zf-CCCH_3 family is found in eukaryotes, and is typically between 155 and 169 amino acids in length. Pssm-ID: 464787 [Multi-domain] Cd Length: 110 Bit Score: 38.60 E-value: 6.76e-04
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zf_CCCH_4 | pfam18345 | Zinc finger domain; This is a zinc finger domain found in Zinc finger CCCH-type with G patch ... |
211-229 | 8.31e-04 | |||
Zinc finger domain; This is a zinc finger domain found in Zinc finger CCCH-type with G patch domain-containing proteins such as ZIP. Functional studies indicate that ZIP specifically targets EGFR and represses its transcription, and that the zinc finger and the coiled-coil domains are central to that process. Pssm-ID: 465719 [Multi-domain] Cd Length: 19 Bit Score: 35.86 E-value: 8.31e-04
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ZnF_C3H1 | smart00356 | zinc finger; |
240-260 | 2.11e-03 | |||
zinc finger; Pssm-ID: 214632 [Multi-domain] Cd Length: 27 Bit Score: 34.91 E-value: 2.11e-03
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Blast search parameters | ||||
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