NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|852893535|emb|CDW74345|]
View 

Trascription Activator Protein [Cestrum yellow leaf curling virus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Gemini_AL2 super family cl03213
Geminivirus AL2 protein; Geminiviruses are small, ssDNA-containing plant viruses. ...
 1-128 1.11e-30

Geminivirus AL2 protein; Geminiviruses are small, ssDNA-containing plant viruses. Geminiviruses contain three ORFs (designated AL1, AL2, and AL3) that overlap and are specified by multiple polycistronic mRNAs. The AL2 gene product transactivates expression of TGMV coat protein gene, and BR1 movement protein.


The actual alignment was detected with superfamily member pfam01440:

Pssm-ID: 279747  Cd Length: 126  Bit Score: 106.61  E-value: 1.11e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 852893535    1 MRSSSPSKAHStqvpIKVQHRLAK-KKTRRRRVDLPCGCSYFITLAChNHGFTHRGTHHCNSSTEWRVYLGDSKSPLFQD 79
Cdd:pfam01440   1 MKPLSPGHQPS----IKSKVRSLItKQQRRRKITLPCGCSFTIHIEC-NDGFTHRGTYHSPSGNKFRGIRECTESTLYET 75

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 852893535   80 NRAPQQAIPHEPRHHHcPDTVQSQPEESIGDTQMFPSLPNLDDLTASDW 128
Cdd:pfam01440  76 PMVRRANLSTEDTNPI-TNQSQLQPPESVGSPQVLDELNDNRIIQSSDW 123
 
Name Accession Description Interval E-value
Gemini_AL2 pfam01440
Geminivirus AL2 protein; Geminiviruses are small, ssDNA-containing plant viruses. ...
 1-128 1.11e-30

Geminivirus AL2 protein; Geminiviruses are small, ssDNA-containing plant viruses. Geminiviruses contain three ORFs (designated AL1, AL2, and AL3) that overlap and are specified by multiple polycistronic mRNAs. The AL2 gene product transactivates expression of TGMV coat protein gene, and BR1 movement protein.


Pssm-ID: 279747  Cd Length: 126  Bit Score: 106.61  E-value: 1.11e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 852893535    1 MRSSSPSKAHStqvpIKVQHRLAK-KKTRRRRVDLPCGCSYFITLAChNHGFTHRGTHHCNSSTEWRVYLGDSKSPLFQD 79
Cdd:pfam01440   1 MKPLSPGHQPS----IKSKVRSLItKQQRRRKITLPCGCSFTIHIEC-NDGFTHRGTYHSPSGNKFRGIRECTESTLYET 75

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 852893535   80 NRAPQQAIPHEPRHHHcPDTVQSQPEESIGDTQMFPSLPNLDDLTASDW 128
Cdd:pfam01440  76 PMVRRANLSTEDTNPI-TNQSQLQPPESVGSPQVLDELNDNRIIQSSDW 123
 
Name Accession Description Interval E-value
Gemini_AL2 pfam01440
Geminivirus AL2 protein; Geminiviruses are small, ssDNA-containing plant viruses. ...
 1-128 1.11e-30

Geminivirus AL2 protein; Geminiviruses are small, ssDNA-containing plant viruses. Geminiviruses contain three ORFs (designated AL1, AL2, and AL3) that overlap and are specified by multiple polycistronic mRNAs. The AL2 gene product transactivates expression of TGMV coat protein gene, and BR1 movement protein.


Pssm-ID: 279747  Cd Length: 126  Bit Score: 106.61  E-value: 1.11e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 852893535    1 MRSSSPSKAHStqvpIKVQHRLAK-KKTRRRRVDLPCGCSYFITLAChNHGFTHRGTHHCNSSTEWRVYLGDSKSPLFQD 79
Cdd:pfam01440   1 MKPLSPGHQPS----IKSKVRSLItKQQRRRKITLPCGCSFTIHIEC-NDGFTHRGTYHSPSGNKFRGIRECTESTLYET 75

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 852893535   80 NRAPQQAIPHEPRHHHcPDTVQSQPEESIGDTQMFPSLPNLDDLTASDW 128
Cdd:pfam01440  76 PMVRRANLSTEDTNPI-TNQSQLQPPESVGSPQVLDELNDNRIIQSSDW 123
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH