|
Name |
Accession |
Description |
Interval |
E-value |
| nifH |
PRK13233 |
nitrogenase iron protein; |
1-275 |
0e+00 |
|
nitrogenase iron protein;
Pssm-ID: 183905 Cd Length: 275 Bit Score: 569.84 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850990953 1 MVRKIAIYGKGGIGKSTTQQNTAAAMSYFHGKNVMIHGCDPKADSTRLILGGKMQTTMMDTLRELGEVACTPDKVIETGF 80
Cdd:PRK13233 1 MTRKIAIYGKGGIGKSTTTQNTAAAMAYFHDKKVFIHGCDPKADSTRLILGGKPQTTMMDTLRELGEEKVTPDKVIKTGF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850990953 81 GGIKCVESGGPEPGVGCAGRGVITAITLMERHGVYEKDLDFVFFDVLGDVVCGGFAMPVRDGKAEEIYIVASGEMMALYA 160
Cdd:PRK13233 81 KDIRCVESGGPEPGVGCAGRGVITAIDLMEENGAYTDDLDFVFFDVLGDVVCGGFAMPIRDGKAQEVYIVASGEMMAIYA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850990953 161 ANNICKGMVKYARQSGVRLGGIICNSRNVDGEKELLEEFCERIGTQMIHFVPRDNIVQKAEFNKKSVIEFDPECNQSQEY 240
Cdd:PRK13233 161 ANNICKGLVKYAEQSGVRLGGIICNSRNVDGELELLEEFTDAIGTQMIHFVPRDNIVQKAEFNKKTVVEFDPDCNQAKEY 240
|
250 260 270
....*....|....*....|....*....|....*
gi 850990953 241 RELARKIIENKDFVIPEPMTMDEMEELVVKYGVMD 275
Cdd:PRK13233 241 KELARKIIENKDFVIPKPLTMDELEEMVVKYGLMD 275
|
|
| NifH/CfbC |
COG1348 |
Nitrogenase ATPase subunit NifH/coenzyme F430 biosynthesis subunit CfbC [Coenzyme transport ... |
1-275 |
0e+00 |
|
Nitrogenase ATPase subunit NifH/coenzyme F430 biosynthesis subunit CfbC [Coenzyme transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440959 Cd Length: 276 Bit Score: 539.37 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850990953 1 MVRKIAIYGKGGIGKSTTQQNTAAAMSYfHGKNVMIHGCDPKADSTRLILGGKMQTTMMDTLRELGEvACTPDKVIETGF 80
Cdd:COG1348 1 MMRQIAIYGKGGIGKSTTSSNLSAALAE-MGKKVMQIGCDPKADSTRLLLGGKRIPTVLDTLREKGE-DVELEDIVFEGF 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850990953 81 GGIKCVESGGPEPGVGCAGRGVITAITLMERHGVYEKDLDFVFFDVLGDVVCGGFAMPVRDGKAEEIYIVASGEMMALYA 160
Cdd:COG1348 79 GGVKCVEAGGPEPGVGCAGRGIITAIELLEELGAYEEDLDVVIYDVLGDVVCGGFAMPIREGYADEIYIVTSGEFMALYA 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850990953 161 ANNICKGMVKYARQSGVRLGGIICNSRNVDGEKELLEEFCERIGTQMIHFVPRDNIVQKAEFNKKSVIEFDPECNQSQEY 240
Cdd:COG1348 159 ANNICKGIKKYANRGGVRLGGIICNSRNVDGERELVEEFAERLGTQIIAFVPRSNIVQRAELNGKTVIEYAPDSEQADEY 238
|
250 260 270
....*....|....*....|....*....|....*
gi 850990953 241 RELARKIIENKDFVIPEPMTMDEMEELVVKYGVMD 275
Cdd:COG1348 239 RELAKKILENKKLVIPKPLSDEELEELLLEYGILE 273
|
|
| nifH |
TIGR01287 |
nitrogenase iron protein; This model describes nitrogenase (EC 1.18.6.1) iron protein, also ... |
3-275 |
0e+00 |
|
nitrogenase iron protein; This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase. [Central intermediary metabolism, Nitrogen fixation]
Pssm-ID: 273538 Cd Length: 275 Bit Score: 498.84 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850990953 3 RKIAIYGKGGIGKSTTQQNTAAAMSYFhGKNVMIHGCDPKADSTRLILGGKMQTTMMDTLRELGEVACTPDKVIETGFGG 82
Cdd:TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAEM-GKKVMIVGCDPKADSTRLLLGGKAQPTVLDVLREKGAEDLELEDVIKEGFGG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850990953 83 IKCVESGGPEPGVGCAGRGVITAITLMERHGVYEKDLDFVFFDVLGDVVCGGFAMPVRDGKAEEIYIVASGEMMALYAAN 162
Cdd:TIGR01287 80 IRCVESGGPEPGVGCAGRGVITAINLLEELGAYEDDLDFVFYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMMALYAAN 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850990953 163 NICKGMVKYARQSGVRLGGIICNSRNVDGEKELLEEFCERIGTQMIHFVPRDNIVQKAEFNKKSVIEFDPECNQSQEYRE 242
Cdd:TIGR01287 160 NICKGILKYAKSGGVRLGGLICNSRNVDDEKELIDEFAKKLGTQLIHFVPRSNIVQKAEIRKMTVIEYDPESEQANEYRE 239
|
250 260 270
....*....|....*....|....*....|...
gi 850990953 243 LARKIIENKDFVIPEPMTMDEMEELVVKYGVMD 275
Cdd:TIGR01287 240 LAKKIYENTEFVIPTPLTMDELEEILMKFGIML 272
|
|
| NifH |
cd02040 |
nitrogenase component II NifH; NifH gene encodes component II (iron protein) of nitrogenase. ... |
3-267 |
1.37e-175 |
|
nitrogenase component II NifH; NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Pssm-ID: 349759 Cd Length: 265 Bit Score: 484.32 E-value: 1.37e-175
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850990953 3 RKIAIYGKGGIGKSTTQQNTAAAMSYFhGKNVMIHGCDPKADSTRLILGGKMQTTMMDTLRELGEVAcTPDKVIETGFGG 82
Cdd:cd02040 1 RQIAIYGKGGIGKSTTASNLSAALAEM-GKKVLHVGCDPKADSTRLLLGGKAIPTVLDTLREKGEVE-ELEDVIKEGFNG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850990953 83 IKCVESGGPEPGVGCAGRGVITAITLMERHGVYEKDLDFVFFDVLGDVVCGGFAMPVRDGKAEEIYIVASGEMMALYAAN 162
Cdd:cd02040 79 IKCVESGGPEPGVGCAGRGIITAINLLEELGAYEEDLDVVFYDVLGDVVCGGFAMPIREGYADEVYIVTSGEMMALYAAN 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850990953 163 NICKGMVKYARQSGVRLGGIICNSRNVDGEKELLEEFCERIGTQMIHFVPRDNIVQKAEFNKKSVIEFDPECNQSQEYRE 242
Cdd:cd02040 159 NIAKGIVKYAERGGVRLGGLICNSRNVDREEELVEEFAERLGTQIIHFVPRSNEVQEAELRGKTVIEYDPDSEQADEYRE 238
|
250 260
....*....|....*....|....*
gi 850990953 243 LARKIIENKDFVIPEPMTMDEMEEL 267
Cdd:cd02040 239 LAKKILENKKLVIPKPLTMEELEEL 263
|
|
| F430_CfbC |
NF033200 |
Ni-sirohydrochlorin a,c-diamide reductive cyclase ATP-dependent reductase subunit; This family, ... |
3-267 |
7.05e-148 |
|
Ni-sirohydrochlorin a,c-diamide reductive cyclase ATP-dependent reductase subunit; This family, very closely related to the nitrogenase iron protein, was identified as a subunit involved in biosynthesis of coenzyme F430 in archaeal methanogens and archaeal anaerobic methanotrophs.
Pssm-ID: 380202 Cd Length: 260 Bit Score: 414.27 E-value: 7.05e-148
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850990953 3 RKIAIYGKGGIGKSTTQQNTAAAMSYfHGKNVMIHGCDPKADSTRLILGGKMQTTMMDTLRELGEVacTPDKVIETGFGG 82
Cdd:NF033200 1 KQIAIYGKGGIGKSTTVSNLAAALSE-EGKKVMVIGCDPKADSTRTLMGGRRIPTILDLLRENKNI--KEEDVVFEGYGG 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850990953 83 IKCVESGGPEPGVGCAGRGVITAITLMERHGVYEKDLDFVFFDVLGDVVCGGFAMPVRDGKAEEIYIVASGEMMALYAAN 162
Cdd:NF033200 78 VRCVESGGPEPGVGCAGRGIIVAMQLLEKLGAFMEDLDVIIYDVLGDVVCGGFAVPLREGYADEVYIVTSGEYMSLYAAN 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850990953 163 NICKGMVKYARqsgvRLGGIICNSRNVDGEKELLEEFCERIGTQMIHFVPRDNIVQKAEFNKKSVIEFDPECNQSQEYRE 242
Cdd:NF033200 158 NICKGIKKLKG----RLGGIICNSRNIENEEEIVEEFAERIGSRLIGFIPRSELVQKSELEAKTVIEKAPDSEQAAVYRK 233
|
250 260
....*....|....*....|....*
gi 850990953 243 LARKIIENKDFVIPEPMTMDEMEEL 267
Cdd:NF033200 234 LAKKIMENTDFVIPEPLEDEELEEL 258
|
|
| Fer4_NifH |
pfam00142 |
4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; |
3-274 |
4.07e-141 |
|
4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family;
Pssm-ID: 395090 Cd Length: 271 Bit Score: 397.58 E-value: 4.07e-141
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850990953 3 RKIAIYGKGGIGKSTTQQNTAAAMSYFhGKNVMIHGCDPKADSTRLILGGKMQTTMMDTLRELGEVA-CTPDKVIETGFG 81
Cdd:pfam00142 1 RQIAIYGKGGIGKSTTSQNLSAALAEM-GKKVLVVGCDPKADSTRLLLGGKLQPTVLDTAREKGYVEdVEVEDVVYKGYG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850990953 82 GIKCVESGGPEPGVGCAGRGVITAITLMERHGVYEkDLDFVFFDVLGDVVCGGFAMPVRDGKAEEIYIVASGEMMALYAA 161
Cdd:pfam00142 80 GVKCVESGGPEPGVGCAGRGVITAINLLEELGAYD-DLDFVLYDVLGDVVCGGFAMPIREGKAQEIYIVTSNEMMALYAA 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850990953 162 NNICKGMVKYARQSGVRLGGIICNSRNVDGEKELLEEFCERIGTQMIHFVPRDNIVQKAEFNKKSVIEFDPECNQSQEYR 241
Cdd:pfam00142 159 NNIAKGIQKYAKSGGVRLGGIICNSRKVDDERELIDAFAEELGTQVLHFVPRDNIVRKAELRKQTVIEYAPDSEQAQEYR 238
|
250 260 270
....*....|....*....|....*....|...
gi 850990953 242 ELARKIIENKDFVIPEPMTMDEMEELVVKYGVM 274
Cdd:pfam00142 239 ELARKILENPKGTIPTPLSMDELEALLEDFGLM 271
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| nifH |
PRK13233 |
nitrogenase iron protein; |
1-275 |
0e+00 |
|
nitrogenase iron protein;
Pssm-ID: 183905 Cd Length: 275 Bit Score: 569.84 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850990953 1 MVRKIAIYGKGGIGKSTTQQNTAAAMSYFHGKNVMIHGCDPKADSTRLILGGKMQTTMMDTLRELGEVACTPDKVIETGF 80
Cdd:PRK13233 1 MTRKIAIYGKGGIGKSTTTQNTAAAMAYFHDKKVFIHGCDPKADSTRLILGGKPQTTMMDTLRELGEEKVTPDKVIKTGF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850990953 81 GGIKCVESGGPEPGVGCAGRGVITAITLMERHGVYEKDLDFVFFDVLGDVVCGGFAMPVRDGKAEEIYIVASGEMMALYA 160
Cdd:PRK13233 81 KDIRCVESGGPEPGVGCAGRGVITAIDLMEENGAYTDDLDFVFFDVLGDVVCGGFAMPIRDGKAQEVYIVASGEMMAIYA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850990953 161 ANNICKGMVKYARQSGVRLGGIICNSRNVDGEKELLEEFCERIGTQMIHFVPRDNIVQKAEFNKKSVIEFDPECNQSQEY 240
Cdd:PRK13233 161 ANNICKGLVKYAEQSGVRLGGIICNSRNVDGELELLEEFTDAIGTQMIHFVPRDNIVQKAEFNKKTVVEFDPDCNQAKEY 240
|
250 260 270
....*....|....*....|....*....|....*
gi 850990953 241 RELARKIIENKDFVIPEPMTMDEMEELVVKYGVMD 275
Cdd:PRK13233 241 KELARKIIENKDFVIPKPLTMDELEEMVVKYGLMD 275
|
|
| NifH/CfbC |
COG1348 |
Nitrogenase ATPase subunit NifH/coenzyme F430 biosynthesis subunit CfbC [Coenzyme transport ... |
1-275 |
0e+00 |
|
Nitrogenase ATPase subunit NifH/coenzyme F430 biosynthesis subunit CfbC [Coenzyme transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440959 Cd Length: 276 Bit Score: 539.37 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850990953 1 MVRKIAIYGKGGIGKSTTQQNTAAAMSYfHGKNVMIHGCDPKADSTRLILGGKMQTTMMDTLRELGEvACTPDKVIETGF 80
Cdd:COG1348 1 MMRQIAIYGKGGIGKSTTSSNLSAALAE-MGKKVMQIGCDPKADSTRLLLGGKRIPTVLDTLREKGE-DVELEDIVFEGF 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850990953 81 GGIKCVESGGPEPGVGCAGRGVITAITLMERHGVYEKDLDFVFFDVLGDVVCGGFAMPVRDGKAEEIYIVASGEMMALYA 160
Cdd:COG1348 79 GGVKCVEAGGPEPGVGCAGRGIITAIELLEELGAYEEDLDVVIYDVLGDVVCGGFAMPIREGYADEIYIVTSGEFMALYA 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850990953 161 ANNICKGMVKYARQSGVRLGGIICNSRNVDGEKELLEEFCERIGTQMIHFVPRDNIVQKAEFNKKSVIEFDPECNQSQEY 240
Cdd:COG1348 159 ANNICKGIKKYANRGGVRLGGIICNSRNVDGERELVEEFAERLGTQIIAFVPRSNIVQRAELNGKTVIEYAPDSEQADEY 238
|
250 260 270
....*....|....*....|....*....|....*
gi 850990953 241 RELARKIIENKDFVIPEPMTMDEMEELVVKYGVMD 275
Cdd:COG1348 239 RELAKKILENKKLVIPKPLSDEELEELLLEYGILE 273
|
|
| nifH |
TIGR01287 |
nitrogenase iron protein; This model describes nitrogenase (EC 1.18.6.1) iron protein, also ... |
3-275 |
0e+00 |
|
nitrogenase iron protein; This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase. [Central intermediary metabolism, Nitrogen fixation]
Pssm-ID: 273538 Cd Length: 275 Bit Score: 498.84 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850990953 3 RKIAIYGKGGIGKSTTQQNTAAAMSYFhGKNVMIHGCDPKADSTRLILGGKMQTTMMDTLRELGEVACTPDKVIETGFGG 82
Cdd:TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAEM-GKKVMIVGCDPKADSTRLLLGGKAQPTVLDVLREKGAEDLELEDVIKEGFGG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850990953 83 IKCVESGGPEPGVGCAGRGVITAITLMERHGVYEKDLDFVFFDVLGDVVCGGFAMPVRDGKAEEIYIVASGEMMALYAAN 162
Cdd:TIGR01287 80 IRCVESGGPEPGVGCAGRGVITAINLLEELGAYEDDLDFVFYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMMALYAAN 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850990953 163 NICKGMVKYARQSGVRLGGIICNSRNVDGEKELLEEFCERIGTQMIHFVPRDNIVQKAEFNKKSVIEFDPECNQSQEYRE 242
Cdd:TIGR01287 160 NICKGILKYAKSGGVRLGGLICNSRNVDDEKELIDEFAKKLGTQLIHFVPRSNIVQKAEIRKMTVIEYDPESEQANEYRE 239
|
250 260 270
....*....|....*....|....*....|...
gi 850990953 243 LARKIIENKDFVIPEPMTMDEMEELVVKYGVMD 275
Cdd:TIGR01287 240 LAKKIYENTEFVIPTPLTMDELEEILMKFGIML 272
|
|
| NifH |
cd02040 |
nitrogenase component II NifH; NifH gene encodes component II (iron protein) of nitrogenase. ... |
3-267 |
1.37e-175 |
|
nitrogenase component II NifH; NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Pssm-ID: 349759 Cd Length: 265 Bit Score: 484.32 E-value: 1.37e-175
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850990953 3 RKIAIYGKGGIGKSTTQQNTAAAMSYFhGKNVMIHGCDPKADSTRLILGGKMQTTMMDTLRELGEVAcTPDKVIETGFGG 82
Cdd:cd02040 1 RQIAIYGKGGIGKSTTASNLSAALAEM-GKKVLHVGCDPKADSTRLLLGGKAIPTVLDTLREKGEVE-ELEDVIKEGFNG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850990953 83 IKCVESGGPEPGVGCAGRGVITAITLMERHGVYEKDLDFVFFDVLGDVVCGGFAMPVRDGKAEEIYIVASGEMMALYAAN 162
Cdd:cd02040 79 IKCVESGGPEPGVGCAGRGIITAINLLEELGAYEEDLDVVFYDVLGDVVCGGFAMPIREGYADEVYIVTSGEMMALYAAN 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850990953 163 NICKGMVKYARQSGVRLGGIICNSRNVDGEKELLEEFCERIGTQMIHFVPRDNIVQKAEFNKKSVIEFDPECNQSQEYRE 242
Cdd:cd02040 159 NIAKGIVKYAERGGVRLGGLICNSRNVDREEELVEEFAERLGTQIIHFVPRSNEVQEAELRGKTVIEYDPDSEQADEYRE 238
|
250 260
....*....|....*....|....*
gi 850990953 243 LARKIIENKDFVIPEPMTMDEMEEL 267
Cdd:cd02040 239 LAKKILENKKLVIPKPLTMEELEEL 263
|
|
| F430_CfbC |
NF033200 |
Ni-sirohydrochlorin a,c-diamide reductive cyclase ATP-dependent reductase subunit; This family, ... |
3-267 |
7.05e-148 |
|
Ni-sirohydrochlorin a,c-diamide reductive cyclase ATP-dependent reductase subunit; This family, very closely related to the nitrogenase iron protein, was identified as a subunit involved in biosynthesis of coenzyme F430 in archaeal methanogens and archaeal anaerobic methanotrophs.
Pssm-ID: 380202 Cd Length: 260 Bit Score: 414.27 E-value: 7.05e-148
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850990953 3 RKIAIYGKGGIGKSTTQQNTAAAMSYfHGKNVMIHGCDPKADSTRLILGGKMQTTMMDTLRELGEVacTPDKVIETGFGG 82
Cdd:NF033200 1 KQIAIYGKGGIGKSTTVSNLAAALSE-EGKKVMVIGCDPKADSTRTLMGGRRIPTILDLLRENKNI--KEEDVVFEGYGG 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850990953 83 IKCVESGGPEPGVGCAGRGVITAITLMERHGVYEKDLDFVFFDVLGDVVCGGFAMPVRDGKAEEIYIVASGEMMALYAAN 162
Cdd:NF033200 78 VRCVESGGPEPGVGCAGRGIIVAMQLLEKLGAFMEDLDVIIYDVLGDVVCGGFAVPLREGYADEVYIVTSGEYMSLYAAN 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850990953 163 NICKGMVKYARqsgvRLGGIICNSRNVDGEKELLEEFCERIGTQMIHFVPRDNIVQKAEFNKKSVIEFDPECNQSQEYRE 242
Cdd:NF033200 158 NICKGIKKLKG----RLGGIICNSRNIENEEEIVEEFAERIGSRLIGFIPRSELVQKSELEAKTVIEKAPDSEQAAVYRK 233
|
250 260
....*....|....*....|....*
gi 850990953 243 LARKIIENKDFVIPEPMTMDEMEEL 267
Cdd:NF033200 234 LAKKIMENTDFVIPEPLEDEELEEL 258
|
|
| Fer4_NifH |
pfam00142 |
4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; |
3-274 |
4.07e-141 |
|
4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family;
Pssm-ID: 395090 Cd Length: 271 Bit Score: 397.58 E-value: 4.07e-141
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850990953 3 RKIAIYGKGGIGKSTTQQNTAAAMSYFhGKNVMIHGCDPKADSTRLILGGKMQTTMMDTLRELGEVA-CTPDKVIETGFG 81
Cdd:pfam00142 1 RQIAIYGKGGIGKSTTSQNLSAALAEM-GKKVLVVGCDPKADSTRLLLGGKLQPTVLDTAREKGYVEdVEVEDVVYKGYG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850990953 82 GIKCVESGGPEPGVGCAGRGVITAITLMERHGVYEkDLDFVFFDVLGDVVCGGFAMPVRDGKAEEIYIVASGEMMALYAA 161
Cdd:pfam00142 80 GVKCVESGGPEPGVGCAGRGVITAINLLEELGAYD-DLDFVLYDVLGDVVCGGFAMPIREGKAQEIYIVTSNEMMALYAA 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850990953 162 NNICKGMVKYARQSGVRLGGIICNSRNVDGEKELLEEFCERIGTQMIHFVPRDNIVQKAEFNKKSVIEFDPECNQSQEYR 241
Cdd:pfam00142 159 NNIAKGIQKYAKSGGVRLGGIICNSRKVDDERELIDAFAEELGTQVLHFVPRDNIVRKAELRKQTVIEYAPDSEQAQEYR 238
|
250 260 270
....*....|....*....|....*....|...
gi 850990953 242 ELARKIIENKDFVIPEPMTMDEMEELVVKYGVM 274
Cdd:pfam00142 239 ELARKILENPKGTIPTPLSMDELEALLEDFGLM 271
|
|
| NifH-like |
cd02117 |
NifH family; This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) ... |
3-267 |
2.59e-113 |
|
NifH family; This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase, and the BchX subunit of the Chlorophyllide reductase. Members of this family use energy from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for substrate reduction
Pssm-ID: 349761 Cd Length: 266 Bit Score: 327.01 E-value: 2.59e-113
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850990953 3 RKIAIYGKGGIGKSTTQQNTAAAMSYFhGKNVMIHGCDPKADSTRLILGGKMQTTMMDTLRELGEV-ACTPDKVIETGFG 81
Cdd:cd02117 1 ESIVVYGKGGIGKSTTASNLSAALAEG-GKKVLHVGCDPKHDSTLLLTGGKVPPTIDEMLTEDGTAeELRREDLLFSGFN 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850990953 82 GIKCVESGGPEPGVGCAGRGVITAITLMERHGVYEKDLDFVFFDVLGDVVCGGFAMPVRDGKAEEIYIVASGEMMALYAA 161
Cdd:cd02117 80 GVDCVEAGGPEPGVGCGGRGIGTMLELLEEHGLLDDDYDVVIFDVLGDVVCGGFAAPLRRGFAQKVVIVVSEELMSLYAA 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850990953 162 NNICKGMVKYARQsGVRLGGIICNSRNvDGEKELLEEFCERIGTQMIHFVPRDNIVQKAEFNKKSVIEFDPECNQSQEYR 241
Cdd:cd02117 160 NNIVKAVENYSKN-GVRLAGLVANLRD-PAGTEEIQAFAAAVGTKILAVIPRDPAVRRAELARVTVFEHDPVSPAASEFA 237
|
250 260
....*....|....*....|....*..
gi 850990953 242 ELARKIIENKDFVI-PEPMTMDEMEEL 267
Cdd:cd02117 238 RLAAKIADAVPPVPgPRPLSDRELFAL 264
|
|
| PRK13230 |
PRK13230 |
nitrogenase reductase-like protein; Reviewed |
2-267 |
4.24e-107 |
|
nitrogenase reductase-like protein; Reviewed
Pssm-ID: 183903 Cd Length: 279 Bit Score: 311.71 E-value: 4.24e-107
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850990953 2 VRKIAIYGKGGIGKSTTQQNTAAAMSYfHGKNVMIHGCDPKADSTRLILGGKMqTTMMDTLRELGEVACTPDKVIETGFG 81
Cdd:PRK13230 1 MRKFCFYGKGGIGKSTTVCNIAAALAE-SGKKVLVVGCDPKADCTRNLVGEKI-PTVLDVLREKGIDNLGLEDIIYEGFN 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850990953 82 GIKCVESGGPEPGVGCAGRGVITAITLMERHGVYEK-DLDFVFFDVLGDVVCGGFAMPVRDGKAEEIYIVASGEMMALYA 160
Cdd:PRK13230 79 GIYCVESGGPEPGYGCAGRGVITAIDLLKKLGVFEElGPDVVIYDILGDVVCGGFAMPLQKGLADDVYIVTTCDPMAIYA 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850990953 161 ANNICKGMVKYARQSGVRLGGIICNSRNVDGEKELLEEFCERIGTQMIHFVPRDNIVQKAEFNKKSVIEFDPECNQSQEY 240
Cdd:PRK13230 159 ANNICKGIKRFAKRGKSALGGIIYNGRSVIDAPDIVEEFAKKIGTNVIGKIPMSNIITEAEIYGKTVIEYAPDSEISNIF 238
|
250 260
....*....|....*....|....*..
gi 850990953 241 RELARKIIENKDFVIPEPMTMDEMEEL 267
Cdd:PRK13230 239 RELAEAIYENNTGTIPNPLEEEEIDQI 265
|
|
| PRK13231 |
PRK13231 |
nitrogenase reductase-like protein; Reviewed |
1-271 |
5.65e-105 |
|
nitrogenase reductase-like protein; Reviewed
Pssm-ID: 183904 Cd Length: 264 Bit Score: 305.57 E-value: 5.65e-105
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850990953 1 MVRKIAIYGKGGIGKSTTQQNTAAAMSYFHgkNVMIHGCDPKADSTRlILGGKMQTTMMDTLRELGEVACtpDKVIETGF 80
Cdd:PRK13231 1 VMKKIAIYGKGGIGKSTTVSNMAAAYSNDH--RVLVIGCDPKADTTR-TLCGKRIPTVLDTLKDNRKPEL--EDIIHEGF 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850990953 81 GGIKCVESGGPEPGVGCAGRGVITAITLMERHGVYEKDLDFVFFDVLGDVVCGGFAMPVRDGKAEEIYIVASGEMMALYA 160
Cdd:PRK13231 76 NGILCVESGGPEPGVGCAGRGVIVAMNLLENLGVFDEDIDVVIYDVLGDVVCGGFSVPLREDYADEVYIVTSGEYMSLYA 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850990953 161 ANNICKGMVKYARqsgvRLGGIICNSRNVDGEKELLEEFCERIGTQMIHFVPRDNIVQKAEFNKKSVIEFDPECNQSQEY 240
Cdd:PRK13231 156 ANNIARGIKKLKG----KLGGIICNCRGIDNEVEIVSEFASRIGSRIIGVIPRSNLVQESELDAKTVVETFPESEQASVY 231
|
250 260 270
....*....|....*....|....*....|.
gi 850990953 241 RELARKIIENKDFVIPEPMTMDEMEELVVKY 271
Cdd:PRK13231 232 RKLANNIMNNTEFSTPEPMDDEEFEEFFKSF 262
|
|
| chlL |
PRK13185 |
protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional |
1-268 |
2.91e-73 |
|
protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Pssm-ID: 237293 Cd Length: 270 Bit Score: 225.23 E-value: 2.91e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850990953 1 MVRKIAIYGKGGIGKSTTQQNTAAAMSYFhGKNVMIHGCDPKADSTrLILGGKMQTTMMDTLRELG----EVacTPDKVI 76
Cdd:PRK13185 1 MALVLAVYGKGGIGKSTTSSNLSAAFAKL-GKKVLQIGCDPKHDST-FTLTGKLVPTVIDILEEVDfhseEL--RPEDFV 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850990953 77 ETGFGGIKCVESGGPEPGVGCAGRGVITAITLMERHGVYEkDLDFVFFDVLGDVVCGGFAMPVRdgKAEEIYIVASGEMM 156
Cdd:PRK13185 77 YEGYNGVDCVEAGGPPAGTGCGGYVVGETVKLLKEHHLLD-DYDVILFDVLGDVVCGGFAAPLQ--YADYALIVTANDFD 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850990953 157 ALYAANNICKGMVKYARQSGVRLGGIICNSrnvDGEKELLEEFCERIGTQMIHFVPRDNIVQKAEFNKKSVIEFDPECNQ 236
Cdd:PRK13185 154 SIFAANRIAAAIQAKAKNYKVRLAGVIANR---SAGTDLIDKFNEAVGLKVLAHVPDLDAIRRSRLKGKTLFEMEETDPG 230
|
250 260 270
....*....|....*....|....*....|....*.
gi 850990953 237 ----SQEYRELARKIIENKDFVIPEPMTMDEMEELV 268
Cdd:PRK13185 231 leevQNEYLRLAEQLLAGPEPLVPKPLKDREIFELL 266
|
|
| Bchl-like |
cd02032 |
L-subunit of protochlorophyllide reductase; This family of proteins contains BchL and ChlL. ... |
4-268 |
2.41e-71 |
|
L-subunit of protochlorophyllide reductase; This family of proteins contains BchL and ChlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Pssm-ID: 349752 Cd Length: 267 Bit Score: 220.25 E-value: 2.41e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850990953 4 KIAIYGKGGIGKSTTQQNTAAAMSYfHGKNVMIHGCDPKADSTrLILGGKMQTTMMDTLRELG----EVacTPDKVIETG 79
Cdd:cd02032 2 VIAVYGKGGIGKSTTSSNLSAAFAK-RGKKVLQIGCDPKHDST-FTLTGFLIPTVIDVLQSVDfhyeEV--WPEDVIFTG 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850990953 80 FGGIKCVESGGPEPGVGCAGRGVITAITLMERHGVYEkDLDFVFFDVLGDVVCGGFAMPVRdgKAEEIYIVASGEMMALY 159
Cdd:cd02032 78 YGGVDCVEAGGPPAGTGCGGYVVGETVKLLKELNAFD-EYDVILFDVLGDVVCGGFAAPLN--YADYCLIVTANDFDSLF 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850990953 160 AANNICKGMVKYARQSGVRLGGIICN-SRNVDgekeLLEEFCERIGTQMIHFVPRDNIVQKAEFNKKSVIEFD---PECN 235
Cdd:cd02032 155 AANRIAAAVREKAKTYPVRLAGIIGNrTDKTD----LIDKFVEAVPMPVLEVLPLIEDIRRSRVKGKTLFEMEesePELN 230
|
250 260 270
....*....|....*....|....*....|....
gi 850990953 236 Q-SQEYRELARKIIENKDFVIPEPMTMDEMEELV 268
Cdd:cd02032 231 YvCDEYLNIADQLLSDPEGVVPKPLPDREIFDLL 264
|
|
| BchX |
cd02033 |
X-subunit of protochlorophyllide reductase; Chlorophyllide reductase converts chlorophylls ... |
5-264 |
9.00e-47 |
|
X-subunit of protochlorophyllide reductase; Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Pssm-ID: 349753 Cd Length: 329 Bit Score: 159.23 E-value: 9.00e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850990953 5 IAIYGKGGIGKSTTQQNTAAAMSYfHGKNVMIHGCDPKADSTRLILGGKMQTTMMDTL---RELGEVACTPDKVIETGfg 81
Cdd:cd02033 34 IAIYGKGGIGKSFTLANLSYMMAQ-QGKRVLLIGCDPKSDTTSLLFGGKACPTIIETStrkKLAGEEVKIGDVCFKRG-- 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850990953 82 GIKCVESGGPEPGVGCAGRGVITAITLMERHGVYEKDLDFVFFDVLGDVVCGGFAMPVRDGKAEEIYIVASGEMMALYAA 161
Cdd:cd02033 111 GVFAMELGGPEVGRGCGGRGIIHGFELLEKLGFHDWGFDYVLLDFLGDVVCGGFGLPIARDMCQKVIVVGSNDLQSLYVA 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850990953 162 NNICKGmVKYARQSG--VRLGGIICNSRNVDGEKellEEFCERIGTQMIHFVPRDNIVQKAEFNKKSVIEfdPECNQSQE 239
Cdd:cd02033 191 NNVCSA-VEYFRKLGgnVGVAGIVINKDDGTGEA---QAFAKAAGIPVLAAIPADEDIRRKSANYQIVGR--PETQWGPL 264
|
250 260
....*....|....*....|....*
gi 850990953 240 YRELARKIIENKDfVIPEPMTMDEM 264
Cdd:cd02033 265 FAELATNVAEAPP-MRPTPLSQDEL 288
|
|
| chlL |
CHL00072 |
photochlorophyllide reductase subunit L |
4-256 |
2.12e-42 |
|
photochlorophyllide reductase subunit L
Pssm-ID: 177011 Cd Length: 290 Bit Score: 146.81 E-value: 2.12e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850990953 4 KIAIYGKGGIGKSTTQQNTAAAMSYfHGKNVMIHGCDPKADSTrLILGGKMQTTMMDTLRE----LGEVacTPDKVIETG 79
Cdd:CHL00072 2 KLAVYGKGGIGKSTTSCNISIALAR-RGKKVLQIGCDPKHDST-FTLTGFLIPTIIDTLQSkdyhYEDV--WPEDVIYKG 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850990953 80 FGGIKCVESGGPEPGVGCAGRGV-ITAITLMERHGVYEKDLdfVFFDVLGDVVCGGFAMPVrdGKAEEIYIVASGEMMAL 158
Cdd:CHL00072 78 YGGVDCVEAGGPPAGAGCGGYVVgETVKLLKELNAFYEYDI--ILFDVLGDVVCGGFAAPL--NYADYCIIITDNGFDAL 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850990953 159 YAANNICKGMVKYARQSGVRLGGIICNSRNvdgEKELLEEFCERIGTQMIHFVPRDNIVQKAEFNKKSVIE---FDPECN 235
Cdd:CHL00072 154 FAANRIAASVREKARTHPLRLAGLVGNRTS---KRDLIDKYVEACPMPVLEVLPLIEDIRVSRVKGKTLFEmveSEPSLN 230
|
250 260
....*....|....*....|..
gi 850990953 236 QSQE-YRELARKIIENKDFVIP 256
Cdd:CHL00072 231 YVCDyYLNIADQLLSQPEGVVP 252
|
|
| ParA |
COG1192 |
ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein ... |
3-249 |
1.85e-15 |
|
ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ [Cell cycle control, cell division, chromosome partitioning, Cell motility];
Pssm-ID: 440805 [Multi-domain] Cd Length: 253 Bit Score: 73.74 E-value: 1.85e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850990953 3 RKIAIY-GKGGIGKSTTQQNTAAAMSYfHGKNVMIHGCDPKADSTRLiLGGKMQT---TMMDTLRELGEVActpDKVIET 78
Cdd:COG1192 2 KVIAVAnQKGGVGKTTTAVNLAAALAR-RGKRVLLIDLDPQGNLTSG-LGLDPDDldpTLYDLLLDDAPLE---DAIVPT 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850990953 79 GFGGIKCVESGGPEPGVgcagrgvitAITLMERHGV----------YEKDLDFVFFDvlgdvvCGGF-------AMPVrd 141
Cdd:COG1192 77 EIPGLDLIPANIDLAGA---------EIELVSRPGRelrlkralapLADDYDYILID------CPPSlglltlnALAA-- 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850990953 142 gkAEEIYIVASGEMMALYAANNICK--GMVKYARQSGVRLGGIICN---SRNVDgEKELLEEFCERIGTQMI-HFVPRDN 215
Cdd:COG1192 140 --ADSVLIPVQPEYLSLEGLAQLLEtiEEVREDLNPKLEILGILLTmvdPRTRL-SREVLEELREEFGDKVLdTVIPRSV 216
|
250 260 270
....*....|....*....|....*....|....
gi 850990953 216 IVQKAEFNKKSVIEFDPECNQSQEYRELARKIIE 249
Cdd:COG1192 217 ALAEAPSAGKPVFEYDPKSKGAKAYRALAEELLE 250
|
|
| FlhG |
COG0455 |
MinD-like ATPase FlhG/YlxH, activator of the FlhF-type GTPase [Cell cycle control, cell ... |
21-249 |
3.19e-09 |
|
MinD-like ATPase FlhG/YlxH, activator of the FlhF-type GTPase [Cell cycle control, cell division, chromosome partitioning, Cell motility];
Pssm-ID: 440223 [Multi-domain] Cd Length: 230 Bit Score: 55.67 E-value: 3.19e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850990953 21 NTAAAMSYfHGKNVMIHGCDPKADSTRLILGGKMQTTMMDTLRElgevACTPDKVIETGFGGIKCVeSGGPEPGVgcagr 100
Cdd:COG0455 5 NLAAALAR-LGKRVLLVDADLGLANLDVLLGLEPKATLADVLAG----EADLEDAIVQGPGGLDVL-PGGSGPAE----- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850990953 101 gvITAITLMER----HGVYEKDLDFVFFDV---LGDVVCGGFAMpvrdgkAEEIYIVASGEMMALYAAnnicKGMVKYAR 173
Cdd:COG0455 74 --LAELDPEERlirvLEELERFYDVVLVDTgagISDSVLLFLAA------ADEVVVVTTPEPTSITDA----YALLKLLR 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850990953 174 QS-GVRLGGIICN-SRNVDGEKEL---LEEFCER---IGTQMIHFVPRDNIVQKAEFNKKSVIEFDPECNQSQEYRELAR 245
Cdd:COG0455 142 RRlGVRRAGVVVNrVRSEAEARDVferLEQVAERflgVRLRVLGVIPEDPAVREAVRRGRPLVLAAPDSPAARAIRELAA 221
|
....
gi 850990953 246 KIIE 249
Cdd:COG0455 222 RLAG 225
|
|
| FlhG-like |
cd02038 |
MinD-like ATPase FlhG; FlhG is a member of the SIMIBI superfamily. FlhG (also known as YlxH) ... |
3-233 |
1.58e-05 |
|
MinD-like ATPase FlhG; FlhG is a member of the SIMIBI superfamily. FlhG (also known as YlxH) is a major determinant for a variety of flagellation patterns. It effects location and number of bacterial flagella during C-ring assembly.
Pssm-ID: 349758 [Multi-domain] Cd Length: 230 Bit Score: 44.87 E-value: 1.58e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850990953 3 RKIAIY-GKGGIGKSTTQQNTAAAMSYFhGKNVMIHGCDPKADSTRLILGGKMQTTMMDTL---RELGEVAC-TPDKVie 77
Cdd:cd02038 1 RIIAVTsGKGGVGKTNVSANLALALSKL-GKRVLLLDADLGLANLDILLGLAPKKTLGDVLkgrVSLEDIIVeGPEGL-- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850990953 78 tgfggikCVESGGpepgvgcAGRGVITAIT------LMERHGVYEKDLDFVFFDvLGdvvcGGFAMPVRD--GKAEEIYI 149
Cdd:cd02038 78 -------DIIPGG-------SGMEELANLDpeqkakLIEELSSLESNYDYLLID-TG----AGISRNVLDflLAADEVIV 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850990953 150 VASGE---MMALYAannickgMVK--YARQSGVRLGGIICNSRNVDGEKELLEEF---CER---IGTQMIHFVPRDNIVQ 218
Cdd:cd02038 139 VTTPEptsITDAYA-------LIKvlSRRGGKKNFRLIVNMARSPKEGRATFERLkkvAKRfldINLDFVGFIPYDQSVR 211
|
250
....*....|....*
gi 850990953 219 KAEFNKKSVIEFDPE 233
Cdd:cd02038 212 RAVRSQKPFVLLFPN 226
|
|
| ParAB_family |
cd02042 |
partition proteins ParAB family; ParA and ParB of Caulobacter crescentus belong to a conserved ... |
3-49 |
3.58e-05 |
|
partition proteins ParAB family; ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in Rhizobium etli symbiotic plasmid. This operon is involved in the plasmid replication and partition.
Pssm-ID: 349760 [Multi-domain] Cd Length: 130 Bit Score: 42.53 E-value: 3.58e-05
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 850990953 3 RKIAIYG-KGGIGKSTTQQNTAAAMSYfHGKNVMIHGCDPKADSTRLI 49
Cdd:cd02042 1 KVIAVANqKGGVGKTTLAVNLAAALAL-RGKRVLLIDLDPQGSLTSWL 47
|
|
| Mrp |
COG0489 |
Fe-S cluster carrier ATPase, Mrp/ApbC/NBP35 family [Cell cycle control, cell division, ... |
2-194 |
3.82e-04 |
|
Fe-S cluster carrier ATPase, Mrp/ApbC/NBP35 family [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440255 [Multi-domain] Cd Length: 289 Bit Score: 41.33 E-value: 3.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850990953 2 VRKIAIY-GKGGIGKSTTQQNTAAAMSyFHGKNVMIHGCDPKADSTRLILGGKMQTTMMDTLRelGEVAcTPDKVIETGF 80
Cdd:COG0489 92 LEVIAVTsGKGGEGKSTVAANLALALA-QSGKRVLLIDADLRGPSLHRMLGLENRPGLSDVLA--GEAS-LEDVIQPTEV 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850990953 81 GGIKCVESGG-PEPGVGCAGRGVITAitLMERhgvYEKDLDFVFFD---VLGDV-------VCGGFAMPVRDGKAEEIYI 149
Cdd:COG0489 168 EGLDVLPAGPlPPNPSELLASKRLKQ--LLEE---LRGRYDYVIIDtppGLGVAdatllasLVDGVLLVVRPGKTALDDV 242
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 850990953 150 VASGEMmalyaannickgmvkyARQSGVRLGGIICNSRNVDGEKE 194
Cdd:COG0489 243 RKALEM----------------LEKAGVPVLGVVLNMVCPKGERY 271
|
|
| AAA_31 |
pfam13614 |
AAA domain; This family includes a wide variety of AAA domains including some that have lost ... |
3-46 |
3.89e-04 |
|
AAA domain; This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop.
Pssm-ID: 433350 [Multi-domain] Cd Length: 177 Bit Score: 40.26 E-value: 3.89e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 850990953 3 RKIAIYG-KGGIGKSTTQQNTAAAMSYFhGKNVMIHGCDPKADST 46
Cdd:pfam13614 2 KVIAIANqKGGVGKTTTSVNLAAALAKK-GKKVLLIDLDPQGNAT 45
|
|
| ParA |
pfam10609 |
NUBPL iron-transfer P-loop NTPase; This family contains ATPases involved in plasmid ... |
3-248 |
2.45e-03 |
|
NUBPL iron-transfer P-loop NTPase; This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits.
Pssm-ID: 431392 [Multi-domain] Cd Length: 246 Bit Score: 38.59 E-value: 2.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850990953 3 RKIAIY-GKGGIGKSTTQQNTAAAMSYfHGKNVMIhgCDpkADSTrlilgGKMQTTMMDTLRELGEVacTPDKVIETGFG 81
Cdd:pfam10609 4 HVIAVAsGKGGVGKSTVAVNLALALAR-LGYKVGL--LD--ADIY-----GPSIPRMLGLEGERPEQ--SDGGIIPVEAH 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850990953 82 GIKCVESG--GPEPGVGCAGRG--VITAIT--LMErhgVYEKDLDFVFFDV---LGDVvcggfAMPV-----RDGkaeeI 147
Cdd:pfam10609 72 GIKVMSIGflLPDEDDAVIWRGpmKSGAIKqfLTD---VDWGELDYLIIDLppgTGDE-----QLTLaqllpLTG----A 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850990953 148 YIVASGEMMALYAANnicKGmVKYARQSGVRLGGIICN-SRNV---DGEKELL------EEFCERIGTQMIHFVPRD-NI 216
Cdd:pfam10609 140 VIVTTPQDVALLDVR---KA-IDMFKKVNVPVLGVVENmSYFVcphCGEETYIfgkgggEKLAEELGVPFLGEIPLDpDI 215
|
250 260 270
....*....|....*....|....*....|..
gi 850990953 217 VQKAEfNKKSVIEFDPECNQSQEYRELARKII 248
Cdd:pfam10609 216 REAGD-EGKPFVLADPDSPAAKAFLKIADKVA 246
|
|
|