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Conserved domains on  [gi|850380752|ref|WP_048032786|]
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MULTISPECIES: 5-oxoprolinase subunit PxpB [Brevibacillus]

Protein Classification

allophanate hydrolase subunit 1( domain architecture ID 10005226)

allophanate hydrolase subunit 1 (AHS1) converts allophanate to ammonium and carbon dioxide, and is essential for utilization of urea as a nitrogen source in bacteria

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PxpB COG2049
5-oxoprolinase subunit B/Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]; ...
13-243 1.57e-118

5-oxoprolinase subunit B/Allophanate hydrolase subunit 1 [Amino acid transport and metabolism];


:

Pssm-ID: 441652  Cd Length: 229  Bit Score: 337.50  E-value: 1.57e-118
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850380752  13 TLPRYEFSPLGDSGVMVKLGEVIDQLTHEQVILFCEYLQEHPFPGMIESVPGFTTVTVYYDPitlfdpldDILPYDRAVA 92
Cdd:COG2049    1 MRMAMRILPAGDRALLVEFGDEIDLELNRRVLALAAALRAAPLPGVVEVVPAYRSLLVHFDP--------LVIDPAALAA 72
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850380752  93 ILEQMSQQISNTHSKEYRLVEIPVCYGGNFGPDLEVVAKQNGLSIEEVISIHSTTEYLVYMIGFAPGFPYLGGMDERLAT 172
Cdd:COG2049   73 RLRALLAELDAAAEVPSRLVEIPVCYDGEFGPDLEEVARHNGLSVEEVIALHTAAEYRVYMLGFAPGFPYLGGLDPRLAT 152
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 850380752 173 PRRSSPRLSIPMGSVGIGGLQTGIYSIESPGGWQIIGRTPLRLFQAGESSPSLLCAGDKVRFRPISEREYE 243
Cdd:COG2049  153 PRRATPRTRVPAGSVGIAGAQTGIYPLESPGGWQLIGRTPLPLFDPDREPPALLRPGDRVRFVPISEEEFD 223
 
Name Accession Description Interval E-value
PxpB COG2049
5-oxoprolinase subunit B/Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]; ...
13-243 1.57e-118

5-oxoprolinase subunit B/Allophanate hydrolase subunit 1 [Amino acid transport and metabolism];


Pssm-ID: 441652  Cd Length: 229  Bit Score: 337.50  E-value: 1.57e-118
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850380752  13 TLPRYEFSPLGDSGVMVKLGEVIDQLTHEQVILFCEYLQEHPFPGMIESVPGFTTVTVYYDPitlfdpldDILPYDRAVA 92
Cdd:COG2049    1 MRMAMRILPAGDRALLVEFGDEIDLELNRRVLALAAALRAAPLPGVVEVVPAYRSLLVHFDP--------LVIDPAALAA 72
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850380752  93 ILEQMSQQISNTHSKEYRLVEIPVCYGGNFGPDLEVVAKQNGLSIEEVISIHSTTEYLVYMIGFAPGFPYLGGMDERLAT 172
Cdd:COG2049   73 RLRALLAELDAAAEVPSRLVEIPVCYDGEFGPDLEEVARHNGLSVEEVIALHTAAEYRVYMLGFAPGFPYLGGLDPRLAT 152
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 850380752 173 PRRSSPRLSIPMGSVGIGGLQTGIYSIESPGGWQIIGRTPLRLFQAGESSPSLLCAGDKVRFRPISEREYE 243
Cdd:COG2049  153 PRRATPRTRVPAGSVGIAGAQTGIYPLESPGGWQLIGRTPLPLFDPDREPPALLRPGDRVRFVPISEEEFD 223
CT_C_D pfam02682
Carboxyltransferase domain, subdomain C and D; Urea carboxylase (UC) catalyzes a two-step, ...
18-226 1.04e-100

Carboxyltransferase domain, subdomain C and D; Urea carboxylase (UC) catalyzes a two-step, ATP- and biotin-dependent carboxylation reaction of urea. It is composed of biotin carboxylase (BC), carboxyltransferase (CT), and biotin carboxyl carrier protein (BCCP) domains. The CT domain of UC consists of four subdomains, named A, B, C and D. This domain covers the C and D subdomains of the CT domain. This domain covers the whole length of kipI (kinase A inhibitor) from Bacillus subtilis. It can also be found in S. cerevisiae urea amidolyase Dur1,2, which is a multifunctional biotin-dependent enzyme with domains for urea carboxylase and allophanate (urea carboxylate) hydrolase activity.


Pssm-ID: 426925  Cd Length: 201  Bit Score: 291.38  E-value: 1.04e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850380752   18 EFSPLGDSGVMVKLGEVIDQLTHEQVILFCEYLQEHPFPGMIESVPGFTTVTVYYDPITLfdplddilPYDRAVAILEQM 97
Cdd:pfam02682   1 RIRPAGDRALLVEFGDEIDLALNRRVLALAAALRAAPLPGVVEVVPGYRSLLVHYDPLVT--------DLAALEARLRAL 72
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850380752   98 SQQISNTHSKEYRLVEIPVCYGGNFGPDLEVVAKQNGLSIEEVISIHSTTEYLVYMIGFAPGFPYLGGMDERLATPRRSS 177
Cdd:pfam02682  73 LAALEAAAAPGGRLIEIPVCYDGEFGPDLAEVAAHNGLSVEEVIRLHSAAEYRVYFLGFAPGFPYLGGLDPRLAVPRRAT 152
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 850380752  178 PRLSIPMGSVGIGGLQTGIYSIESPGGWQIIGRTPLRLFQAGESSPSLL 226
Cdd:pfam02682 153 PRTRVPAGSVGIAGRQTGIYPLESPGGWQLIGRTPLPLFDPDRDPPALL 201
AHS1 smart00796
Allophanate hydrolase subunit 1; This domain represents subunit 1 of allophanate hydrolase ...
19-224 2.96e-95

Allophanate hydrolase subunit 1; This domain represents subunit 1 of allophanate hydrolase (AHS1).


Pssm-ID: 214820  Cd Length: 201  Bit Score: 277.48  E-value: 2.96e-95
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850380752    19 FSPLGDSGVMVKLGEVIDQLTHEQVILFCEYLQEHPFPGMIESVPGFTTVTVYYDPitlfdpldDILPYDRAVAILEQMS 98
Cdd:smart00796   3 IRPAGDRALLVEFGDEIDLALNRRVLALARALRAAPLPGVVELVPGYRSLLVHFDP--------LVIDPAALLARLRALE 74
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850380752    99 QQISNT-HSKEYRLVEIPVCYGGNFGPDLEVVAKQNGLSIEEVISIHSTTEYLVYMIGFAPGFPYLGGMDERLATPRRSS 177
Cdd:smart00796  75 ALPLAEaLEVPGRIIEIPVCYGGEFGPDLEFVARHNGLSVDEVIRLHSAAEYRVYMLGFAPGFPYLGGLDPRLATPRRST 154
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*..
gi 850380752   178 PRLSIPMGSVGIGGLQTGIYSIESPGGWQIIGRTPLRLFQAGESSPS 224
Cdd:smart00796 155 PRTRVPAGSVGIAGAQTGIYPLESPGGWQLIGRTPLPLFDPDREPPA 201
TIGR00370 TIGR00370
sensor histidine kinase inhibitor, KipI family; [Hypothetical proteins, Conserved]
22-234 5.52e-78

sensor histidine kinase inhibitor, KipI family; [Hypothetical proteins, Conserved]


Pssm-ID: 129467  Cd Length: 202  Bit Score: 233.98  E-value: 5.52e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850380752   22 LGDSGVMVKLGEVIDQLTHEQVILFCEYLQEHPfpGMIESVPGFTTVTVYYDPITLFDPLddilpydraVAILEQMSQQi 101
Cdd:TIGR00370   1 IGESAVVIRLGPPINEQVQGIVWAAAAYLEEQP--GFVECIPGMNNLTVFYDMYEVYKHL---------PQRLSSPWEE- 68
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850380752  102 SNTHSKEYRLVEIPVCYGGNFGPDLEVVAKQNGLSIEEVISIHSTTEYLVYMIGFAPGFPYLGGMDERLATPRRSSPRLS 181
Cdd:TIGR00370  69 VKDYEVNRRIIEIPVCYGGEFGPDLEEVAKINQLSPEEVIDIHSNGEYVVYMLGFQPGFPYLGGLPERLHTPRRASPRPS 148
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 850380752  182 IPMGSVGIGGLQTGIYSIESPGGWQIIGRTPLRLFQAGESSPSLLCAGDKVRF 234
Cdd:TIGR00370 149 VPAGSVGIGGLQTGVYPISTPGGWQLIGKTPLALFDPQENPPTLLRAGDIVKF 201
 
Name Accession Description Interval E-value
PxpB COG2049
5-oxoprolinase subunit B/Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]; ...
13-243 1.57e-118

5-oxoprolinase subunit B/Allophanate hydrolase subunit 1 [Amino acid transport and metabolism];


Pssm-ID: 441652  Cd Length: 229  Bit Score: 337.50  E-value: 1.57e-118
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850380752  13 TLPRYEFSPLGDSGVMVKLGEVIDQLTHEQVILFCEYLQEHPFPGMIESVPGFTTVTVYYDPitlfdpldDILPYDRAVA 92
Cdd:COG2049    1 MRMAMRILPAGDRALLVEFGDEIDLELNRRVLALAAALRAAPLPGVVEVVPAYRSLLVHFDP--------LVIDPAALAA 72
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850380752  93 ILEQMSQQISNTHSKEYRLVEIPVCYGGNFGPDLEVVAKQNGLSIEEVISIHSTTEYLVYMIGFAPGFPYLGGMDERLAT 172
Cdd:COG2049   73 RLRALLAELDAAAEVPSRLVEIPVCYDGEFGPDLEEVARHNGLSVEEVIALHTAAEYRVYMLGFAPGFPYLGGLDPRLAT 152
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 850380752 173 PRRSSPRLSIPMGSVGIGGLQTGIYSIESPGGWQIIGRTPLRLFQAGESSPSLLCAGDKVRFRPISEREYE 243
Cdd:COG2049  153 PRRATPRTRVPAGSVGIAGAQTGIYPLESPGGWQLIGRTPLPLFDPDREPPALLRPGDRVRFVPISEEEFD 223
CT_C_D pfam02682
Carboxyltransferase domain, subdomain C and D; Urea carboxylase (UC) catalyzes a two-step, ...
18-226 1.04e-100

Carboxyltransferase domain, subdomain C and D; Urea carboxylase (UC) catalyzes a two-step, ATP- and biotin-dependent carboxylation reaction of urea. It is composed of biotin carboxylase (BC), carboxyltransferase (CT), and biotin carboxyl carrier protein (BCCP) domains. The CT domain of UC consists of four subdomains, named A, B, C and D. This domain covers the C and D subdomains of the CT domain. This domain covers the whole length of kipI (kinase A inhibitor) from Bacillus subtilis. It can also be found in S. cerevisiae urea amidolyase Dur1,2, which is a multifunctional biotin-dependent enzyme with domains for urea carboxylase and allophanate (urea carboxylate) hydrolase activity.


Pssm-ID: 426925  Cd Length: 201  Bit Score: 291.38  E-value: 1.04e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850380752   18 EFSPLGDSGVMVKLGEVIDQLTHEQVILFCEYLQEHPFPGMIESVPGFTTVTVYYDPITLfdplddilPYDRAVAILEQM 97
Cdd:pfam02682   1 RIRPAGDRALLVEFGDEIDLALNRRVLALAAALRAAPLPGVVEVVPGYRSLLVHYDPLVT--------DLAALEARLRAL 72
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850380752   98 SQQISNTHSKEYRLVEIPVCYGGNFGPDLEVVAKQNGLSIEEVISIHSTTEYLVYMIGFAPGFPYLGGMDERLATPRRSS 177
Cdd:pfam02682  73 LAALEAAAAPGGRLIEIPVCYDGEFGPDLAEVAAHNGLSVEEVIRLHSAAEYRVYFLGFAPGFPYLGGLDPRLAVPRRAT 152
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 850380752  178 PRLSIPMGSVGIGGLQTGIYSIESPGGWQIIGRTPLRLFQAGESSPSLL 226
Cdd:pfam02682 153 PRTRVPAGSVGIAGRQTGIYPLESPGGWQLIGRTPLPLFDPDRDPPALL 201
AHS1 smart00796
Allophanate hydrolase subunit 1; This domain represents subunit 1 of allophanate hydrolase ...
19-224 2.96e-95

Allophanate hydrolase subunit 1; This domain represents subunit 1 of allophanate hydrolase (AHS1).


Pssm-ID: 214820  Cd Length: 201  Bit Score: 277.48  E-value: 2.96e-95
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850380752    19 FSPLGDSGVMVKLGEVIDQLTHEQVILFCEYLQEHPFPGMIESVPGFTTVTVYYDPitlfdpldDILPYDRAVAILEQMS 98
Cdd:smart00796   3 IRPAGDRALLVEFGDEIDLALNRRVLALARALRAAPLPGVVELVPGYRSLLVHFDP--------LVIDPAALLARLRALE 74
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850380752    99 QQISNT-HSKEYRLVEIPVCYGGNFGPDLEVVAKQNGLSIEEVISIHSTTEYLVYMIGFAPGFPYLGGMDERLATPRRSS 177
Cdd:smart00796  75 ALPLAEaLEVPGRIIEIPVCYGGEFGPDLEFVARHNGLSVDEVIRLHSAAEYRVYMLGFAPGFPYLGGLDPRLATPRRST 154
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*..
gi 850380752   178 PRLSIPMGSVGIGGLQTGIYSIESPGGWQIIGRTPLRLFQAGESSPS 224
Cdd:smart00796 155 PRTRVPAGSVGIAGAQTGIYPLESPGGWQLIGRTPLPLFDPDREPPA 201
TIGR00370 TIGR00370
sensor histidine kinase inhibitor, KipI family; [Hypothetical proteins, Conserved]
22-234 5.52e-78

sensor histidine kinase inhibitor, KipI family; [Hypothetical proteins, Conserved]


Pssm-ID: 129467  Cd Length: 202  Bit Score: 233.98  E-value: 5.52e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850380752   22 LGDSGVMVKLGEVIDQLTHEQVILFCEYLQEHPfpGMIESVPGFTTVTVYYDPITLFDPLddilpydraVAILEQMSQQi 101
Cdd:TIGR00370   1 IGESAVVIRLGPPINEQVQGIVWAAAAYLEEQP--GFVECIPGMNNLTVFYDMYEVYKHL---------PQRLSSPWEE- 68
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850380752  102 SNTHSKEYRLVEIPVCYGGNFGPDLEVVAKQNGLSIEEVISIHSTTEYLVYMIGFAPGFPYLGGMDERLATPRRSSPRLS 181
Cdd:TIGR00370  69 VKDYEVNRRIIEIPVCYGGEFGPDLEEVAKINQLSPEEVIDIHSNGEYVVYMLGFQPGFPYLGGLPERLHTPRRASPRPS 148
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 850380752  182 IPMGSVGIGGLQTGIYSIESPGGWQIIGRTPLRLFQAGESSPSLLCAGDKVRF 234
Cdd:TIGR00370 149 VPAGSVGIGGLQTGVYPISTPGGWQLIGKTPLALFDPQENPPTLLRAGDIVKF 201
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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