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Conserved domains on  [gi|84662612|ref|YP_453577|]
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minor tail protein [Xanthomonas phage OP1]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1833 super family cl17968
Domain of unknown function (DUF1833); This family of proteins are functionally uncharacterized ...
 16-143 1.25e-09

Domain of unknown function (DUF1833); This family of proteins are functionally uncharacterized and are predicted to adopt an all-beta fold. They are often found in gene neighborhoods containing genes for an NlpC peptidase and a Ubiquitin domain predicted to be involved in tail assembly.


The actual alignment was detected with superfamily member pfam08875:

Pssm-ID: 286019  Cd Length: 150  Bit Score: 53.42  E-value: 1.25e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84662612    16 ILQVLEISAAYLPDTLRLVKDVKDWTINGQ-----DYIGLEFTITLPEDRSGSNGVLEIKMSNVGRDVTEDLEKRPPDQM 90
Cdd:pfam08875  15 ILEVLEITHQDFIEPYRMVKDWDDLTITLEtgqvvVCTALGMDLALPARNDDGTPDLTFALDNVGGIATDFVRGALRDGR 94

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 84662612    91 ---MTAVLKLSDRQTPGEFYRIIPMPIDRVSIDAQTVTLTASMDSIMRQQACRLRF 143
Cdd:pfam08875  95 rmsLTYRAYTSDDLNAPHVHAPIRFKIKDVSVDAAQVSVTAGYFDLLNKRWPRNTY 150
 
Name Accession Description Interval E-value
DUF1833 pfam08875
Domain of unknown function (DUF1833); This family of proteins are functionally uncharacterized ...
 16-143 1.25e-09

Domain of unknown function (DUF1833); This family of proteins are functionally uncharacterized and are predicted to adopt an all-beta fold. They are often found in gene neighborhoods containing genes for an NlpC peptidase and a Ubiquitin domain predicted to be involved in tail assembly.


Pssm-ID: 286019  Cd Length: 150  Bit Score: 53.42  E-value: 1.25e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84662612    16 ILQVLEISAAYLPDTLRLVKDVKDWTINGQ-----DYIGLEFTITLPEDRSGSNGVLEIKMSNVGRDVTEDLEKRPPDQM 90
Cdd:pfam08875  15 ILEVLEITHQDFIEPYRMVKDWDDLTITLEtgqvvVCTALGMDLALPARNDDGTPDLTFALDNVGGIATDFVRGALRDGR 94

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 84662612    91 ---MTAVLKLSDRQTPGEFYRIIPMPIDRVSIDAQTVTLTASMDSIMRQQACRLRF 143
Cdd:pfam08875  95 rmsLTYRAYTSDDLNAPHVHAPIRFKIKDVSVDAAQVSVTAGYFDLLNKRWPRNTY 150
 
Name Accession Description Interval E-value
DUF1833 pfam08875
Domain of unknown function (DUF1833); This family of proteins are functionally uncharacterized ...
 16-143 1.25e-09

Domain of unknown function (DUF1833); This family of proteins are functionally uncharacterized and are predicted to adopt an all-beta fold. They are often found in gene neighborhoods containing genes for an NlpC peptidase and a Ubiquitin domain predicted to be involved in tail assembly.


Pssm-ID: 286019  Cd Length: 150  Bit Score: 53.42  E-value: 1.25e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84662612    16 ILQVLEISAAYLPDTLRLVKDVKDWTINGQ-----DYIGLEFTITLPEDRSGSNGVLEIKMSNVGRDVTEDLEKRPPDQM 90
Cdd:pfam08875  15 ILEVLEITHQDFIEPYRMVKDWDDLTITLEtgqvvVCTALGMDLALPARNDDGTPDLTFALDNVGGIATDFVRGALRDGR 94

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 84662612    91 ---MTAVLKLSDRQTPGEFYRIIPMPIDRVSIDAQTVTLTASMDSIMRQQACRLRF 143
Cdd:pfam08875  95 rmsLTYRAYTSDDLNAPHVHAPIRFKIKDVSVDAAQVSVTAGYFDLLNKRWPRNTY 150
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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