NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|84488741|ref|YP_448913|]
View 

NADH dehydrogenase subunit 3 (mitochondrion) [Sclerophasma paresisense]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009588)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-117 1.43e-36

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 120.35  E-value: 1.43e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488741    1 MMNTLYLMMIIVMLATIVMMLSSTISKKSIIDREKSSPFECGFEPMNKSRLPFSLRFFLIAVMFLIFDVEIALLLPMPIL 80
Cdd:MTH00148   1 MLSILLSLLFALILSPVLLLLGLVLSKRSYSDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQS 80

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 84488741   81 LLTSPVKTWMITGMIFIMILLMGLYYEWNQGMLKWAE 117
Cdd:MTH00148  81 LGSSFSVWSLTSLFIFLLILILGLFHEWNEGSLDWVS 117
 
Name Accession Description Interval E-value
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-117 1.43e-36

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 120.35  E-value: 1.43e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488741    1 MMNTLYLMMIIVMLATIVMMLSSTISKKSIIDREKSSPFECGFEPMNKSRLPFSLRFFLIAVMFLIFDVEIALLLPMPIL 80
Cdd:MTH00148   1 MLSILLSLLFALILSPVLLLLGLVLSKRSYSDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQS 80

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 84488741   81 LLTSPVKTWMITGMIFIMILLMGLYYEWNQGMLKWAE 117
Cdd:MTH00148  81 LGSSFSVWSLTSLFIFLLILILGLFHEWNEGSLDWVS 117
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
32-114 1.71e-21

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 81.32  E-value: 1.71e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488741    32 DREKSSPFECGFEPMNKSRLPFSLRFFLIAVMFLIFDVEIALLLPMPILLLTSPVkTWMITGMIFIMILLMGLYYEWNQG 111
Cdd:pfam00507  13 NPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGW-FGFVEMLIFIAILLVGLVYAWKKG 91


                  ...
gi 84488741   112 MLK 114
Cdd:pfam00507  92 ALE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 7-115 4.04e-17

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 70.92  E-value: 4.04e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488741   7 LMMIIVMLATIVMMLSSTISKKSIIDREKSSPFECGFEPMNKSRLPFSLRFFLIAVMFLIFDVEIALLLPMPILLLTSPV 86
Cdd:COG0838  10 IFLLVALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWAVVFRELGW 89

                        90       100
                ....*....|....*....|....*....
gi 84488741  87 kTWMITGMIFIMILLMGLYYEWNQGMLKW 115
Cdd:COG0838  90 -FGLIEMLVFIAILLVGLIYAWKKGALEW 117
 
Name Accession Description Interval E-value
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-117 1.43e-36

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 120.35  E-value: 1.43e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488741    1 MMNTLYLMMIIVMLATIVMMLSSTISKKSIIDREKSSPFECGFEPMNKSRLPFSLRFFLIAVMFLIFDVEIALLLPMPIL 80
Cdd:MTH00148   1 MLSILLSLLFALILSPVLLLLGLVLSKRSYSDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQS 80

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 84488741   81 LLTSPVKTWMITGMIFIMILLMGLYYEWNQGMLKWAE 117
Cdd:MTH00148  81 LGSSFSVWSLTSLFIFLLILILGLFHEWNEGSLDWVS 117
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 5-115 9.12e-34

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 112.95  E-value: 9.12e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488741    5 LYLMMIIVMLATIVMMLSSTISKKSIIDREKSSPFECGFEPMNKSRLPFSLRFFLIAVMFLIFDVEIALLLPMPILLLTS 84
Cdd:MTH00161   3 LIILLIILLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFKTS 82

                         90       100       110
                 ....*....|....*....|....*....|.
gi 84488741   85 PVKTWMITGMIFIMILLMGLYYEWNQGMLKW 115
Cdd:MTH00161  83 NMMSWLITSSFFILILLLGLYYEWNQGALEW 113
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 1-117 3.09e-31

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 106.99  E-value: 3.09e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488741    1 MMNTLYLMMIIVMLATIVMMLSSTISKKSIiDREKSSPFECGFEPMNKSRLPFSLRFFLIAVMFLIFDVEIALLLPMPIL 80
Cdd:MTH00042   1 MTNLIFFLLIILILTSLLLLAGHFLPSRSP-DLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPA 79

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 84488741   81 LLTSPVKTWMITGMIFIMILLMGLYYEWNQGMLKWAE 117
Cdd:MTH00042  80 TLITNPSTLLPISLIFLIILTIGLVYEWVNGGLEWAE 116
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 1-117 1.93e-30

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 104.69  E-value: 1.93e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488741    1 MMNTLYLMMIIVMLATIVMMLSSTISKKSIIDREKSSPFECGFEPMNKSRLPFSLRFFLIAVMFLIFDVEIALLLPMPIL 80
Cdd:MTH00202   1 MLLILFMSILSILISSLLFLVSWMLSFRSLMDREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLV 80

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 84488741   81 LLTSPVKTWMITGMIFIMILLMGLYYEWNQGMLKWAE 117
Cdd:MTH00202  81 LKSSWSKGGLLGGTIFLLILIGGLIHEWKEGSLDWVK 117
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 1-116 8.33e-28

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 98.39  E-value: 8.33e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488741    1 MMNTLYLMMIIVMLATIVMMLSSTISKKSIIDREKSSPFECGFEPMNKSRLPFSLRFFLIAVMFLIFDVEIALLLPMPIL 80
Cdd:MTH00012   1 MSLMMIPMMISLILPPLVLGAAWVLAARSTADREKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTI 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 84488741   81 LLTSPVKTWMITGMIFIMILLMGLYYEWNQGMLKWA 116
Cdd:MTH00012  81 LMTSTSKTVVYTSILFLLILVIGLIHEWREGSLDWS 116
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 2-117 3.55e-26

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 93.83  E-value: 3.55e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488741    2 MNTLYLMMIIVMLATIVMMLSSTISKKSIIDREKSSPFECGFEPMNKSRLPFSLRFFLIAVMFLIFDVEIALLL-PMPIL 80
Cdd:MTH00136   1 MNLITTILTITIALSLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLpLPWGD 80

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 84488741   81 LLTSPVKTWMITGMIfIMILLMGLYYEWNQGMLKWAE 117
Cdd:MTH00136  81 QLPSPLLTFFWATAV-LILLTLGLIYEWLQGGLEWAE 116
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 2-117 5.44e-26

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 93.47  E-value: 5.44e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488741    2 MNTLYLMMIIVMLATIVMMLSSTISKKSIIdREKSSPFECGFEPMNKSRLPFSLRFFLIAVMFLIFDVEIALLLPMPILL 81
Cdd:MTH00106   1 MNLMLTLLTNTLLASLLVLIAFWLPQLNIY-SEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAS 79

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 84488741   82 LTSPVKTWMITGMIFIMILLMGLYYEWNQGMLKWAE 117
Cdd:MTH00106  80 QTNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 2-116 3.71e-25

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 91.48  E-value: 3.71e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488741    2 MNTLYLMMIIVMLATIVMMLSSTISKKSIiDREKSSPFECGFEPMNKSRLPFSLRFFLIAVMFLIFDVEIALLLPMPILL 81
Cdd:MTH00113   1 MNLISMLTISLALSTILTTLNFWLTQTKP-DNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAI 79

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 84488741   82 LTSPVKTWMITGMIFIMILLMGLYYEWNQGMLKWA 116
Cdd:MTH00113  80 NLTTPTTTLTWATIILTLLTLGLIYEWLQGGLEWA 114
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 5-115 1.63e-24

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 89.57  E-value: 1.63e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488741    5 LYLMMIIVMLATIVMMLSSTISK--KSIIDREKSSPFECGFEPMNKSRLPFSLRFFLIAVMFLIFDVEIALLLPMPILLL 82
Cdd:MTH00203   2 NLIMLFFLIALLLSLILLFIAFWlpKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWSNQ 81

                         90       100       110
                 ....*....|....*....|....*....|...
gi 84488741   83 TSPVKTWMItgMIFIMILLMGLYYEWNQGMLKW 115
Cdd:MTH00203  82 LSSLSLLLA--FLFLILLTLGLIYEWLQGGLEW 112
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 7-117 2.36e-24

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 89.28  E-value: 2.36e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488741    7 LMMIIVMLATIVMMLSSTIS---KKSIIDREKSSPFECGFEPMNKSRLPFSLRFFLIAVMFLIFDVEIALLL-PMPILLL 82
Cdd:MTH00069   1 LIMLMLLISTILSLILITISfwlPLNNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLpTPWASQL 80

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 84488741   83 TSPVKTWMITGMIFIMiLLMGLYYEWNQGMLKWAE 117
Cdd:MTH00069  81 NTPTNTLFWSTLILIL-LTLGLIYEWIQGGLEWAE 114
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
32-114 1.71e-21

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 81.32  E-value: 1.71e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488741    32 DREKSSPFECGFEPMNKSRLPFSLRFFLIAVMFLIFDVEIALLLPMPILLLTSPVkTWMITGMIFIMILLMGLYYEWNQG 111
Cdd:pfam00507  13 NPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGW-FGFVEMLIFIAILLVGLVYAWKKG 91


                  ...
gi 84488741   112 MLK 114
Cdd:pfam00507  92 ALE 94
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 2-115 8.82e-21

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 80.11  E-value: 8.82e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488741    2 MNTLYLMMIIVMLATIVMMLSSTISKKSIiDREKSSPFECGFEPMNKSRLPFSLRFFLIAVMFLIFDVEIALLL-PMPIL 80
Cdd:MTH00018   1 YGLFILLIFSVVLSALFSGASYFLGVKQP-DREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFpWCVLY 79

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 84488741   81 LLTSPVKTWMItgMIFIMILLMGLYYEWNQGMLKW 115
Cdd:MTH00018  80 NQIAPFGFWTM--VGFLFILTLGLIYEWIKGGLEW 112
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 9-116 6.39e-19

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 75.67  E-value: 6.39e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488741    9 MIIVMLATIVMMLSSTISKKSIIDREKSSPFECGFEPMNKSRLPFSLRFFLIAVMFLIFDVEIALLLPMPILLLTSPVkT 88
Cdd:PRK06602  15 LIVAIGLGILLLVAGKLLGPRAPDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFLFPWAVSFREIGW-L 93

                         90       100
                 ....*....|....*....|....*...
gi 84488741   89 WMITGMIFIMILLMGLYYEWNQGMLKWA 116
Cdd:PRK06602  94 GFVEAMIFILVLLVGLVYLWRKGALDWE 121
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 7-115 4.04e-17

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 70.92  E-value: 4.04e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488741   7 LMMIIVMLATIVMMLSSTISKKSIIDREKSSPFECGFEPMNKSRLPFSLRFFLIAVMFLIFDVEIALLLPMPILLLTSPV 86
Cdd:COG0838  10 IFLLVALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWAVVFRELGW 89

                        90       100
                ....*....|....*....|....*....
gi 84488741  87 kTWMITGMIFIMILLMGLYYEWNQGMLKW 115
Cdd:COG0838  90 -FGLIEMLVFIAILLVGLIYAWKKGALEW 117
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 1-115 8.37e-17

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 70.12  E-value: 8.37e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488741    1 MMNTLYLMMIIVMLATIVMMLSSTISKKSIiDREKSSPFECGFEPMNKSRLPFSLRFFLIAVMFLIFDVEIALLL-PMPI 79
Cdd:MTH00055   5 FLGIFILLLFSIGLSTVISGASYIVGVKQP-DSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFpWCVV 83

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 84488741   80 LLLTSPVKTWMItgMIFIMILLMGLYYEWNQGMLKW 115
Cdd:MTH00055  84 YNQIGLFGFWVM--YLFLIILTIGLIYEWVKGGLEW 117
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 3-115 2.82e-14

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 63.80  E-value: 2.82e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488741    3 NTLYLMMIIVMLATIVMMLSSTISKKSIIDREKSSPFECGFEPMNKSRLPFSLRFFLIAVMFLIFDVEIALLLPMPILLL 82
Cdd:MTH00030  11 STLLGVGIILLLVSISFTLGNSRIGLTKPDSEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLFPWSIVFN 90

                         90       100       110
                 ....*....|....*....|....*....|...
gi 84488741   83 TSPVKTWMITgMIFIMILLMGLYYEWNQGMLKW 115
Cdd:MTH00030  91 QLNLFSFWIV-YTFLIVLAIGLAYEWIKGGLEW 122
ndhC CHL00022
NADH dehydrogenase subunit 3
 3-115 3.38e-10

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 53.07  E-value: 3.38e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488741    3 NTLYLMMIIVMLATIVMMLSSTISKKSIIDREKSSPFECGFEPMNKSRLPFSLRFFLIAVMFLIFDVEIALLLPMPILLL 82
Cdd:CHL00022   8 DIFWAFLIISSLIPILAFLISGLLAPISKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFD 87

                         90       100       110
                 ....*....|....*....|....*....|...
gi 84488741   83 TSPVKTWmITGMIFIMILLMGLYYEWNQGMLKW 115
Cdd:CHL00022  88 VLGVSAF-IEALIFVLILIVGLVYAWRKGALEW 119
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
32-115 2.23e-08

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 48.59  E-value: 2.23e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488741   32 DREKSSPFECGFEPMNKSRLPFSLRFFLIAVMFLIFDVEIALLLPMPILLLTSPVKTwMITGMIFIMILLMGLYYEWNQG 111
Cdd:PRK07756  39 SAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYPWAVAYDKLGLFA-LIEMLIFVVMLLVGLAYAWKKK 117


                 ....
gi 84488741  112 MLKW 115
Cdd:PRK07756 118 VLQW 121
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 1-115 2.31e-06

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 42.96  E-value: 2.31e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488741    1 MMNTLYLMMIIVMLATIVMMLSSTISKKSIiDREKSSPFECGFEPMNKSRLPFSLRFFLIAVMFLIFDVEIALLLPMPIL 80
Cdd:MTH00092   1 MLVLIFVFLFTLLLLMLLYLLNFFLSVKKF-DLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFLGLLVS 79

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 84488741   81 LLTSPVKTWMItgMIFImilLMGLYYEWNQGMLKW 115
Cdd:MTH00092  80 DFSSLISFFML--MIFI---FFGFYMEWWYGKLIW 109
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
16-115 5.55e-06

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 42.35  E-value: 5.55e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488741   16 TIVMMLSSTISKK-SIIDRE--KSSPFECGFEPmNKSRLPFSLRFFLIAVMFLIFDVEIALLLPMPILLLtspVKTW--M 90
Cdd:PRK08489  25 FLTTRLARFISRKlAQKNTEklKLAIYECGPEP-VKQPNRISSHFYIMALLFILFDVEIVFMFPWAVDFK---LLGLfgL 100

                         90       100
                 ....*....|....*....|....*
gi 84488741   91 ITGMIFIMILLMGLYYEWNQGMLKW 115
Cdd:PRK08489 101 IEMLLFIVLLTIGFIYAWKKGALEW 125
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 5-115 4.05e-04

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 36.96  E-value: 4.05e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488741    5 LYLMMIIVMLATIVMMLSSTISKKSIIDREKSSPFECGFEPMNKSRLP--FSLRFFLIAVMFLIFDVEIALLLPMPILLL 82
Cdd:PRK07928   7 ILVLGALAAAFAVVSVVVASLVGPKRYNRAKLEAYECGIEPTPQPAGGgrFPVKYYLTAMLFIVFDIEIVFLYPWAVSFD 86

                         90       100       110
                 ....*....|....*....|....*....|...
gi 84488741   83 TSPVKTwMITGMIFIMILLMGLYYEWNQGMLKW 115
Cdd:PRK07928  87 ALGVFG-LVEMALFMLTVFVAYAYVWRRGGLEW 118
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
 26-71 7.10e-03

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 33.72  E-value: 7.10e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 84488741   26 SKKSIIDREKSSPFECGFEPMNKSRLPFSLRFFLIAVMFLIFDVEI 71
Cdd:MTH00060  28 NKIYSGGFSWVSSFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEI 73
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH