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Conserved domains on  [gi|84488637|ref|YP_448829|]
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NADH dehydrogenase subunit 1 (mitochondrion) [Indotestudo elongata]

Protein Classification

NADH dehydrogenase subunit 1( domain architecture ID 10009570)

NADH dehydrogenase subunit 1 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 1-323 0e+00

NADH dehydrogenase subunit 1; Provisional


:

Pssm-ID: 214422  Cd Length: 323  Bit Score: 579.93  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637    1 MKTLLPNLMTPLTYMIPILIAVAFFTLTERKMLGYMQLRKGPNIVGPYGLLQPMADGMKLFIKEPIYPLNSSTMLFTMSP 80
Cdd:MTH00111   1 MPTLLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTP 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637   81 ILALLLALSIWLPFPIPFPLADLNLGILFLMSISSLMVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGTILLSLTL 160
Cdd:MTH00111  81 ILALLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637  161 FSGGFNMQTFMMTQEPMYLMFSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGSFTLFFLSEYSNILMMN 240
Cdd:MTH00111 161 LSGGYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMN 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637  241 TLTTILFLNPAHTNNTPELFSLSLMSKVTLLSAGFLWIRASYPRFRYDQLMHLLWKNFLPITLALCIWHISMPIALSGLP 320
Cdd:MTH00111 241 TLTTILFLNPSTLNLPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLP 320


                 ...
gi 84488637  321 PMP 323
Cdd:MTH00111 321 PQL 323
 
Name Accession Description Interval E-value
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 1-323 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 579.93  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637    1 MKTLLPNLMTPLTYMIPILIAVAFFTLTERKMLGYMQLRKGPNIVGPYGLLQPMADGMKLFIKEPIYPLNSSTMLFTMSP 80
Cdd:MTH00111   1 MPTLLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTP 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637   81 ILALLLALSIWLPFPIPFPLADLNLGILFLMSISSLMVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGTILLSLTL 160
Cdd:MTH00111  81 ILALLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637  161 FSGGFNMQTFMMTQEPMYLMFSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGSFTLFFLSEYSNILMMN 240
Cdd:MTH00111 161 LSGGYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMN 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637  241 TLTTILFLNPAHTNNTPELFSLSLMSKVTLLSAGFLWIRASYPRFRYDQLMHLLWKNFLPITLALCIWHISMPIALSGLP 320
Cdd:MTH00111 241 TLTTILFLNPSTLNLPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLP 320


                 ...
gi 84488637  321 PMP 323
Cdd:MTH00111 321 PQL 323
NADHdh pfam00146
NADH dehydrogenase;
12-308 5.10e-108

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 316.72  E-value: 5.10e-108
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637    12 LTYMIPILIAVAFFTLTERKMLGYMQLRKGPNIVGPYGLLQPMADGMKLFIKEPIYPLNSSTMLFTMSPILALLLALSIW 91
Cdd:pfam00146   3 LLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637    92 --LPFPIPFPLADLNLGILFLMSISSLMVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGTILLSLTLFSGGFNMQT 169
Cdd:pfam00146  83 avIPFGPGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637   170 FMMTQEPMYLMFSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGSFTLFFLSEYSNILMMNTLTTILFLN 249
Cdd:pfam00146 163 IVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLG 242

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 84488637   250 PAHTNNtPELFSLSLMSKVTLLSAGFLWIRASYPRFRYDQLMHLLWKNFLPITLALCIW 308
Cdd:pfam00146 243 GWLGPF-PLPGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 15-304 1.86e-95

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 285.87  E-value: 1.86e-95
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637  15 MIPILIAVAFFTLTERKMLGYMQLRKGPNIVGPYGLLQPMADGMKLFIKEPIYPLNSSTMLFTMSPILALLLALSIW--L 92
Cdd:COG1005  19 LVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAFIPALLAFavI 98

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637  93 PFPIPFPLADLNLGILFLMSISSLMVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGTILLSLTLFSGGFNMQTFMM 172
Cdd:COG1005  99 PFGPGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLLAGSLNLSEIVE 178

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637 173 TQE-PMYLMFSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGSFTLFFLSEYSNILMMNTLTTILFLNPA 251
Cdd:COG1005 179 AQAgGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLVSALATTLFLGGW 258

                       250       260       270       280       290
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 84488637 252 HTNNTPELFS-----LSLMSKVTLLSAGFLWIRASYPRFRYDQLMHLLWKNFLPITLA 304
Cdd:COG1005 259 LGPFPILPLGglpgiLWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLV 316
 
Name Accession Description Interval E-value
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 1-323 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 579.93  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637    1 MKTLLPNLMTPLTYMIPILIAVAFFTLTERKMLGYMQLRKGPNIVGPYGLLQPMADGMKLFIKEPIYPLNSSTMLFTMSP 80
Cdd:MTH00111   1 MPTLLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTP 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637   81 ILALLLALSIWLPFPIPFPLADLNLGILFLMSISSLMVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGTILLSLTL 160
Cdd:MTH00111  81 ILALLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637  161 FSGGFNMQTFMMTQEPMYLMFSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGSFTLFFLSEYSNILMMN 240
Cdd:MTH00111 161 LSGGYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMN 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637  241 TLTTILFLNPAHTNNTPELFSLSLMSKVTLLSAGFLWIRASYPRFRYDQLMHLLWKNFLPITLALCIWHISMPIALSGLP 320
Cdd:MTH00111 241 TLTTILFLNPSTLNLPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLP 320


                 ...
gi 84488637  321 PMP 323
Cdd:MTH00111 321 PQL 323
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
 1-322 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 512.23  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637    1 MKTLLPNLMTPLTYMIPILIAVAFFTLTERKMLGYMQLRKGPNIVGPYGLLQPMADGMKLFIKEPIYPLNSSTMLFTMSP 80
Cdd:MTH00134   2 LSTLITHIINPLAYIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATP 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637   81 ILALLLALSIWLPFPIPFPLADLNLGILFLMSISSLMVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGTILLSLTL 160
Cdd:MTH00134  82 MLALTLALTLWAPMPMPYPVTDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVII 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637  161 FSGGFNMQTFMMTQEPMYLMFSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGSFTLFFLSEYSNILMMN 240
Cdd:MTH00134 162 FTGGFTLQTFNTAQESIWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMN 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637  241 TLTTILFLNPAHTNNTPELFSLSLMSKVTLLSAGFLWIRASYPRFRYDQLMHLLWKNFLPITLALCIWHISMPIALSGLP 320
Cdd:MTH00134 242 TLSAILFLGASHIPTLPELTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLTLALVIWHLALPIAFAGLP 321


                 ..
gi 84488637  321 PM 322
Cdd:MTH00134 322 PQ 323
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
 1-322 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 503.77  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637    1 MKTLLPNLMTPLTYMIPILIAVAFFTLTERKMLGYMQLRKGPNIVGPYGLLQPMADGMKLFIKEPIYPLNSSTMLFTMSP 80
Cdd:MTH00071   1 MMTLISLIINPLLYIIPVLLAVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMP 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637   81 ILALLLALSIWLPFPIPFPLADLNLGILFLMSISSLMVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGTILLSLTL 160
Cdd:MTH00071  81 TMALTLALIIWTPLPMPNNLSNLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVTLGLILLCLIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637  161 FSGGFNMQTFMMTQEPMYLMFSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGSFTLFFLSEYSNILMMN 240
Cdd:MTH00071 161 LTGGFSLMNFNTTQEFMWLIIPAWPMAAMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMN 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637  241 TLTTILFLNPAHTNNTPELFSLSLMSKVTLLSAGFLWIRASYPRFRYDQLMHLLWKNFLPITLALCIWHISMPIALSGLP 320
Cdd:MTH00071 241 TLSTILFLGSTYNHLQPELSTMNLMIKASILSMLFLWVRASYPRFRYDQLMHLVWKNFLPITLAMTIFHISLPISTLGIP 320


                 ..
gi 84488637  321 PM 322
Cdd:MTH00071 321 PM 322
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 12-321 4.08e-175

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 487.59  E-value: 4.08e-175
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637   12 LTYMIPILIAVAFFTLTERKMLGYMQLRKGPNIVGPYGLLQPMADGMKLFIKEPIYPLNSSTMLFTMSPILALLLALSIW 91
Cdd:MTH00104   7 LLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALTLALTMW 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637   92 LPFPIPFPLADLNLGILFLMSISSLMVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGTILLSLTLFSGGFNMQTFM 171
Cdd:MTH00104  87 IPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSFTLSTLI 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637  172 MTQEPMYLMFSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGSFTLFFLSEYSNILMMNTLTTILFLNPA 251
Cdd:MTH00104 167 TTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTILFLGAF 246

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637  252 HTNNTPELFSLSLMSKVTLLSAGFLWIRASYPRFRYDQLMHLLWKNFLPITLALCIWHISMPIALSGLPP 321
Cdd:MTH00104 247 HNPYMPELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMTASIPP 316
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
 4-321 6.27e-145

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 410.84  E-value: 6.27e-145
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637    4 LLPNLMTPLTYMIPILIAVAFFTLTERKMLGYMQLRKGPNIVGPYGLLQPMADGMKLFIKEPIYPLNSSTMLFTMSPILA 83
Cdd:MTH00218   1 MLLSLINLLLYILPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637   84 LLLALSIWLPFPIPFPLADLNLGILFLMSISSLMVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGTILLSLTLFSG 163
Cdd:MTH00218  81 LTLALLLWMPLPLPFSLINLNLGVLFILAISSLGVYSILWSGWASNSKYALMGALRAVAQTISYEVSLGLIILSLIILTG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637  164 GFNMQTFMMTQEPMYLMFSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGSFTLFFLSEYSNILMMNTLT 243
Cdd:MTH00218 161 GFSLEGFNLTQETIWLLIPEWPLALMWFISTLAETNRAPFDLTEGESELVSGFNVEYSGGPFALFFLAEYMNILFMNTLS 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 84488637  244 TILFLNPAHTnntpelfSLSLMSKVTLLSAGFLWIRASYPRFRYDQLMHLLWKNFLPITLALCIWHISMPIALSGLPP 321
Cdd:MTH00218 241 VILFLGTSLT-------TINLMLKATLLVFLFLWVRASLPRFRYDQLMHLAWKNFLPLSLALLLLHTSLPLSFASLPP 311
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
 12-322 1.23e-137

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 392.80  E-value: 1.23e-137
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637   12 LTYMIPILIAVAFFTLTERKMLGYMQLRKGPNIVGPYGLLQPMADGMKLFIKEPIYPLNSSTMLFTMSPILALLLALSIW 91
Cdd:MTH00040  11 LSFIVPVLLAVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSPVLFLFLALLLW 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637   92 LPFPIPFPLADLNLGILFLMSISSLMVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGTILLSLTLFSGGFNMQTFM 171
Cdd:MTH00040  91 SLIPVPTPTLNVNLSLLLVLGLSSLSVYALLGSGWASNSKYSLLGAIRAVAQTISYEISLGLILLSLVIFSGSFSLSSIS 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637  172 MTQEPMYLMFSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGSFTLFFLSEYSNILMMNTLTTILFLN-P 250
Cdd:MTH00040 171 NSQNGSWLLFPCLPLFYIWFISTLAETNRAPFDLTEGESELVSGYNVEYAGGPFALFFIAEYANIIFMNLLSVILFLGgG 250

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 84488637  251 AHTNNTPELFSLSLMSKVTLLSAGFLWIRASYPRFRYDQLMHLLWKNFLPITLALCIWHISMPIALSGLPPM 322
Cdd:MTH00040 251 SPFNEIFPINIIIVGIKTTFLVFLFLWVRASYPRFRYDQLMFLTWKNYLPLSIGLLIFYLLLLSLLNILPPN 322
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
 8-305 2.33e-113

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 330.68  E-value: 2.33e-113
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637    8 LMTPLTYMIPILIAVAFFTLTERKMLGYMQLRKGPNIVGPYGLLQPMADGMKLFIKEPIYPLNSSTMLFTMSPILALLLA 87
Cdd:MTH00143   4 LLSSVFTYLCVLLAVAFFTLLERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSLILA 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637   88 LSIWLPFPIPFPLADLNLGILFLMSISSLMVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGTILLSLTLFSGGFNM 167
Cdd:MTH00143  84 LLLWQLYPSYFSSSYFGWGLLFFLCVSSLNVYGVLLAGWSSNSKYALLGAVRAVAQTISYEVSMSLILLFPLFLSGSFSF 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637  168 QTFMMTQEPMYLMFSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGSFTLFFLSEYSNILMMNTLTTILF 247
Cdd:MTH00143 164 IEISESQFSVWLGFLMFPVFLMWFVSCLAETNRAPFDFAEGESELVSGFNVEYGGGGFALLFLAEYANILFMSLLTVVLF 243

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 84488637  248 LnpAHTNNTPELFSLSLMSKVTLLSAGFLWIRASYPRFRYDQLMHLLWKNFLPITLAL 305
Cdd:MTH00143 244 F--GGSSVLFLLGGVVFMFKVLFFAFLFIWVRASYPRFRYDLLMMLCWKSFLPFSLSI 299
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
 15-318 1.40e-111

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 325.93  E-value: 1.40e-111
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637   15 MIPILIAVAFFTLTERKMLGYMQLRKGPNIVGPYGLLQPMADGMKLFIKEPIYPLNSSTMLFTMSPILALLLALSIWLPF 94
Cdd:MTH00195  12 IVPVLLAVAFFTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVLALALALILWVPI 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637   95 PIPFPLADLNLGILFLMSISSLMVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGTILLSLTLFSGGFNMQTFMMTQ 174
Cdd:MTH00195  92 PSPFGFSSINLSVLFFLCVSSLSVYSILGSGWASNSKYALLGAIRAVAQTISYEVSMGLIILCPICLAGSFDFTIMVISQ 171

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637  175 EPMYLMFSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGSFTLFFLSEYSNILMMNTLTTILFLNPAHTn 254
Cdd:MTH00195 172 GFSWVILLCPPISFMWYVSTLAETNRAPFDFAEGESELVSGFNVEYAGGPFALIFMAEYSNIIFMSVLTTILFLGGGGT- 250

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 84488637  255 ntpelfsLSLMSKVTLLSAGFLWIRASYPRFRYDQLMHLLWKNFLPITLALCIWHISMPIALSG 318
Cdd:MTH00195 251 -------IIVALKSLFLSFCFLWVRGSLPRFRYDQLMHLTWKCYLPLILSLLIPLAAIPFALNS 307
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 15-314 1.96e-110

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 322.87  E-value: 1.96e-110
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637   15 MIPILIAVAFFTLTERKMLGYMQLRKGPNIVGPYGLLQPMADGMKLFIKEPIYPLNSSTMLFTMSPILALLLALSIWLPF 94
Cdd:MTH00193  12 IICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFSLFLSLLIWLIY 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637   95 PIPFPLADLNLGILFLMSISSLMVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGTILLSLTLFSGGFNMQTFMMTQ 174
Cdd:MTH00193  92 PYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIGSFNLLDFMNYQ 171

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637  175 EPMYLMFSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGSFTLFFLSEYSNILMMNTLTTILFLNpahtn 254
Cdd:MTH00193 172 KYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLFVLMFLG----- 246

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637  255 ntPELFSLSLMSKVTLLSAGFLWIRASYPRFRYDQLMHLLWKNFLPITLALCIWHISMPI 314
Cdd:MTH00193 247 --GDLLSLLFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKI 304
NADHdh pfam00146
NADH dehydrogenase;
12-308 5.10e-108

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 316.72  E-value: 5.10e-108
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637    12 LTYMIPILIAVAFFTLTERKMLGYMQLRKGPNIVGPYGLLQPMADGMKLFIKEPIYPLNSSTMLFTMSPILALLLALSIW 91
Cdd:pfam00146   3 LLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637    92 --LPFPIPFPLADLNLGILFLMSISSLMVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGTILLSLTLFSGGFNMQT 169
Cdd:pfam00146  83 avIPFGPGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637   170 FMMTQEPMYLMFSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGSFTLFFLSEYSNILMMNTLTTILFLN 249
Cdd:pfam00146 163 IVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLG 242

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 84488637   250 PAHTNNtPELFSLSLMSKVTLLSAGFLWIRASYPRFRYDQLMHLLWKNFLPITLALCIW 308
Cdd:pfam00146 243 GWLGPF-PLPGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
 7-311 5.68e-107

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 314.28  E-value: 5.68e-107
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637    7 NLMTPLTYMIPILIAVAFFTLTERKMLGYMQLRKGPNIVGPYGLLQPMADGMKLFIKEPIYPLNSSTMLFTMSPILALLL 86
Cdd:MTH00225   3 FLLKFLIMLICLLLSVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPILSLIL 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637   87 ALSIWLPFPIPFPLADLNLGILFLMSISSLMVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGTILLSLTLFSGGFN 166
Cdd:MTH00225  83 SLILWSLYPSMFSIYSFKFGILFFLCISSLNVYTILLAGWSSNSKYALLGALRAVAQTISYEVSMALILLSIVFLVLTYN 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637  167 MQTFMMTQEPMYLMFSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGSFTLFFLSEYSNILMMNTLTTIL 246
Cdd:MTH00225 163 LFDFSYNQKYFWFMFVLFPLFFCWMISMLAETNRAPFDFAEGESELVSGFNIEYSSGGFALIFMAEYGSILFMSMLTSIL 242

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 84488637  247 FLnpahtNNTPELFSLSLMSKVTLLSAGFLWIRASYPRFRYDQLMHLLWKNFLPITLALCIWHIS 311
Cdd:MTH00225 243 FF-----GGFFVTIDLFLILKIMLLAFWFIWVRGVLPRMRYDKLMSLTWKSFLPLSLAYLFMVLI 302
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
 12-321 1.67e-105

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 311.28  E-value: 1.67e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637   12 LTYMIPILIAVAFFTLTERKMLGYMQLRKGPNIVGPYGLLQPMADGMKLFIKEPIYPLNSSTMLFTMSPILALLLALSIW 91
Cdd:MTH00054   9 LAILVPLLISIAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIPNHANIFIYIMAPILSLTLAFIAW 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637   92 --LPFPIPFPLADLNLGILFLMSISSLMVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGTILLSLTLFSGGFNMQT 169
Cdd:MTH00054  89 gvIPYGEGVVLSDLGIGILYLFAVSSISVYAVLMSGWSSNSKYAFLGAIRAAAQMISYEVSIGLIIISVVLCVGSLNLTE 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637  170 FMMTQEPMYLMFSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGSFTLFFLSEYSNILMMNTLTTILFLN 249
Cdd:MTH00054 169 IVLAQKNIWFIFPLFPAAIMFFVSALAETNRVPFDLTEGESELVSGFNVEYSSMSFALFFLAEYCHIILMSTFGVILFLG 248

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 84488637  250 PAHTNNTPELFSLSLMS---KVTLLSAGFLWIRASYPRFRYDQLMHLLWKNFLPITLALCIWHISMPIALSGLPP 321
Cdd:MTH00054 249 GWLVISGPTSYFSNFVWfgiKIALIIFLFIWIRASYPRIRYDQLMALLWKSYLPLSLAFVVLVSGILIGFNALPP 323
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
 1-321 3.52e-103

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 305.51  E-value: 3.52e-103
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637    1 MKTLLPNLMTPLTYMIPILIAVAFFTLTERKMLGYMQLRKGPNIVGPYGLLQPMADGMKLFIKEPIYPLNSSTMLFTMSP 80
Cdd:MTH00216   2 MVFIIFYLIKILIIIVPLLIAVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVAP 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637   81 ILALLLALSIW--LPFPIPFPLADLNLGILFLMSISSLMVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGTILLSL 158
Cdd:MTH00216  82 VLSFTLALIVWgvIPYERGVLISDFKIGILYILAISSISVYAILMSGWGSNSKYAFLGAIRAAAQMISYEVSIGLIIISV 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637  159 TLFSGGFNMQTFMMTQEP-MYLMFSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGSFTLFFLSEYSNIL 237
Cdd:MTH00216 162 LLCVGSLSITEIVLAQNNgIWFFFPLFPVAIMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFALFFLAEYAHII 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637  238 MMNTLTTILFLN-----PAHTNNTPELFSLslmsKVTLLSAGFLWIRASYPRFRYDQLMHLLWKNFLPITLALCIWHISM 312
Cdd:MTH00216 242 LMSCLTTILFLGgwlspIKYFKGGAGWFGL----KVVFIIFLFIWVRASFPRIRYDQLMALLWKSYLPLSLGVVIFVASV 317


                 ....*....
gi 84488637  313 PIALSGLPP 321
Cdd:MTH00216 318 LFGFNGPPP 326
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 15-304 1.86e-95

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 285.87  E-value: 1.86e-95
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637  15 MIPILIAVAFFTLTERKMLGYMQLRKGPNIVGPYGLLQPMADGMKLFIKEPIYPLNSSTMLFTMSPILALLLALSIW--L 92
Cdd:COG1005  19 LVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAFIPALLAFavI 98

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637  93 PFPIPFPLADLNLGILFLMSISSLMVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGTILLSLTLFSGGFNMQTFMM 172
Cdd:COG1005  99 PFGPGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLLAGSLNLSEIVE 178

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637 173 TQE-PMYLMFSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGSFTLFFLSEYSNILMMNTLTTILFLNPA 251
Cdd:COG1005 179 AQAgGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLVSALATTLFLGGW 258

                       250       260       270       280       290
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 84488637 252 HTNNTPELFS-----LSLMSKVTLLSAGFLWIRASYPRFRYDQLMHLLWKNFLPITLA 304
Cdd:COG1005 259 LGPFPILPLGglpgiLWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLV 316
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
15-308 2.21e-92

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 277.84  E-value: 2.21e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637   15 MIPILIAVAFFTLTERKMLGYMQLRKGPNIVGPYGLLQPMADGMKLFIKEPIYPLNSSTMLFTMSPILALLLALSIWL-- 92
Cdd:PRK06076  20 LVVVLLCVAFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFLLAPVIAFIPAFLAWAvi 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637   93 PFPIPFPLADLNLGILFLMSISSLMVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGTILLSLTLFSGGFNMQTFMM 172
Cdd:PRK06076 100 PFGPELVIADLNVGILYILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLNLSDIVE 179

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637  173 TQEPMYLMFSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGSFTLFFLSEYSNILMMNTLTTILFL---N 249
Cdd:PRK06076 180 AQFLSWNIIPQPPAFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGMKFGLFFLGEYINMILVSALITTLFLggwL 259

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 84488637  250 PAHTNNTPELFSLSLMSKVTLLSAGFLWIRASYPRFRYDQLMHLLWKNFLPITLALCIW 308
Cdd:PRK06076 260 PPFPLGGGIPGAIWFVLKVAFFVFLFIWLRATLPRYRYDQLMRLGWKVLLPLSLVNLLL 318
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
 12-321 7.34e-86

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 261.88  E-value: 7.34e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637   12 LTYMIPILIAVAFFTLTERKMLGYMQLRKGPNIVGPYGLLQPMADGMKLFIKEPIYPLNSSTMLFTMSPILALLLALSIW 91
Cdd:MTH00029  14 LIIFVPLLLSVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYIAPIISFTLAILAW 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637   92 LPFPIP--FPLADLNLGILFLMSISSLMVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGTILLSLTLFSGGFNMQT 169
Cdd:MTH00029  94 AIVTMDqgVFLSDLDVGVLYFLAISSLSVYAILLSGWASNSRYPFLGAIRCAAQMISYEVAIGLIIISVILCVGSLNISE 173

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637  170 FMMTQEPMYLMFSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGSFTLFFLSEYSNILMMNTLTTILFLN 249
Cdd:MTH00029 174 IVISQRSVWLIIPLFPAAIMFMVASLAETARAPFDLTEGESELVSGFNVEYSSLSFALFFLAEYSNIILMSCMMTIFFLG 253

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637  250 ----------------PAHTNNTPELFSLSLMSKVTLLSAGFLWIRASYPRFRYDQLMHLLWKNFLPITLALCIWHISMP 313
Cdd:MTH00029 254 gwlspldgiptppeafSIFEQIASSKSSFWFFTKSSIFILFFIWSRASFPRIRYDQLMKLLWKTYLPLSLGLVILTAGIL 333


                 ....*...
gi 84488637  314 IALSGLPP 321
Cdd:MTH00029 334 IGFNGVPP 341
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
 15-316 4.99e-79

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 243.15  E-value: 4.99e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637   15 MIPILIAVAFFTLTERKMLGYMQLRKGPNIVGPYGLLQPMADGMKLFIKEPIYPLNSSTMLFTMSPILALLLALSIWLPF 94
Cdd:MTH00010  13 YVMALLAMAFYTLLERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKEQTKPSPANITPFLGAPMMSLILALLLWSLY 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637   95 PIPFPLADLNLGILFLMSISSLMVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGTILLSLTLFSGGFNMQTFMMTQ 174
Cdd:MTH00010  93 PHKHPSFFLKFSILLFLCVSSMNVYTTLGAGWTSNSKYALLGALRSVAQTISYEVSMSLILLSALLILQTFSFSKIIMSQ 172

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637  175 epmylmfSSWPLMMM------WYISTLAETNRAPFDLTEGESELVSGFNVEYAAGSFTLFFLSEYSNILMMNTLTTILFL 248
Cdd:MTH00010 173 -------YSWILLMIipltvsWFITNLAETNRTPFDFAEGESELVSGFNVEYSSGLFALIFMAEYANILIMSLFTSVFFT 245

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 84488637  249 NPAhtnnTPELFS-LSLMSKVTLLSAGFLWIRASYPRFRYDQLMHLLWKNFLPITLALCIwhISMPIAL 316
Cdd:MTH00010 246 SFI----PSIFISdLMLILKTVFLAFLFIWIRATFPRMRYDRLMNLTWKSFLPMSLTSLM--ISIPIMF 308
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
 15-303 9.28e-62

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 198.20  E-value: 9.28e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637   15 MIPILIAVAFFTLTERKMLGYMQLRKGPNIVGPYGLLQPMADGMKLFIKEPIYPLNSSTMLFTMSPILALLLALSIWLPF 94
Cdd:MTH00090   6 MIFILQAIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYLEWFVL 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637   95 PIPFPLADLNLGILFLMSISSLMVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGTILLSLTLFSGGFN-MQTFMMT 173
Cdd:MTH00090  86 PYFFDFLSFEYSLLFFLCLIGFSVYTTLISGIVSKSKYGFLGALRASSQSISYEIAFSLYLLSIMLHNNSFSfVSSFSLS 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637  174 QEPMYLMFsswplmmmwYISTLAETNRAPFDLTEGESELVSGFNVEYAAGSFTLFFLSEYSNILMMNTLTTILFlnpaht 253
Cdd:MTH00090 166 LFVIYLPF---------LIMIIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSLIFFSVLTSVLF------ 230

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|
gi 84488637  254 nntpelFSLSLMSKVTLLSAgFLWIRASYPRFRYDQLMHLLWKNFLPITL 303
Cdd:MTH00090 231 ------FKFSFLMLFLIFSL-LIFIRSSYPRFRYDMMMSMFWFKFLPLSL 273
ndhA CHL00032
NADH dehydrogenase subunit 1
 12-303 4.00e-50

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 170.13  E-value: 4.00e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637   12 LTYMIPILIAVAFFTLTERKMLGYMQLRKGPNIVGPYGLLQPMADGMKLFIKEPIYPLNSSTMLFTMSPilaLLLALSIW 91
Cdd:CHL00032  34 LTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGDIRLFSIGP---SIAVISIL 110

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637   92 LPFP-IPFP----LADLNLGILFLMSISSLMVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGTILLSLTLFSGgfN 166
Cdd:CHL00032 111 LSYLvIPFGyhlvLADLSIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLLSN--S 188

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637  167 MQTFMMTQEPMYLMFSSWPL------MMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGSFTLFFLSEYSNILMMN 240
Cdd:CHL00032 189 LSTVDIVEAQSKYGFWGWNLwrqpigFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSS 268

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637  241 TLTTILFLNPAHTN----NTPELFSLSLMSKV---------TLLSAG-FLWI----RASYPRFRYDQLMHLLWKNFLPIT 302
Cdd:CHL00032 269 LFVTVLYLGGWNLSipyiFIPELFEINKTGGVfgttigifiTLAKTYlFLFIsittRWTLPRLRMDQLLNLGWKFLLPIS 348


                 .
gi 84488637  303 L 303
Cdd:CHL00032 349 L 349
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
 7-296 2.37e-49

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 166.25  E-value: 2.37e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637    7 NLMTPLTYMIPILIAVAFFTLTERKMLGYMQLRKGPNIVGPYGLLQPMADGMKLFIKEPIYPLNSSTMLFTMSPILALLL 86
Cdd:MTH00058   3 GLVSGLEGLLIILLLVAFFILGERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVKFKVYGFQSRSWFSLFGVFLLVLL 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637   87 ALSIWLPFPIPFPLADLNLGILFLMSISSLMVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGTILLSLTLFSGGFN 166
Cdd:MTH00058  83 VVFYCFIYGSYYSGSYSSLSLLWFLVVTSFSSYSLLCVGWGSYNKYSLLSSIRSAFGSVSFEACFMCIVIFCGLCYGSYS 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637  167 MQTFMMTQEPMYLMFssWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGSFTLFFLSEYSNILMMNTLTTIL 246
Cdd:MTH00058 163 LVDFYYSGWLSVLLF--PLIYILWLVCILCETNRTPFDYGESESELVSGFNTEYSGIYFTCLFACEYLIIFIFSWLGSVL 240

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|
gi 84488637  247 FLNPahtnntpelFSLSLMSKVTLLSagFLWIRASYPRFRYDQLMHLLWK 296
Cdd:MTH00058 241 FFGG---------GFVSIMLLFHLLF--FMWARATLPRVRYDYFVNFFWE 279
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
18-308 7.18e-27

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 107.19  E-value: 7.18e-27
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637  18 ILIAVA-FFTLTERKMLGYMQLRKGPnivgpyGLLQPMADGMKLFIKEPIYPlNSSTMLFTMSPILALLLALSIWLPFPI 96
Cdd:COG0650  13 LALLLApLLLGIIRKVKARLQGRRGP------PILQPYYDLLKLLRKETVVP-ETASWLFRAAPYVALAAMLLAALLVPV 85

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637  97 PF------PLADLnLGILFLMSISSLMvysILWSGWASNSKYALMGALRAVAQTISYEVTLGTILLSLTLFSGGFNMQTF 170
Cdd:COG0650  86 LTtgpplsFSGDL-IVLVYLLALARFF---LALAGLDSGSPFGGIGASREMTLSALAEPPLLLVLFALALLAGSTSLSDI 161

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488637 171 MMTQE---PMYLMFSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGSFTLFFLSEYSNILMMNTLTTILF 247
Cdd:COG0650 162 VAYQAahgPLLLSPSLLLAAIAFFIVLLAETGRIPFDIPETHLELHEGMLLEYSGRHLALLELAAALKLFVLLSLFVNLF 241

                       250       260       270       280       290       300
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 84488637 248 LnPAHTNNTPELFSLSLMSKVTLLSAGFLWIRASYPRFRYDQLMHLLWKNFLPITLALCIW 308
Cdd:COG0650 242 L-PWGIALTLLLALLLFLLKLLVLAVLLAVIEASTARLRLFRVPDFLWTAFLLALLALLLA 301
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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