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Conserved domains on  [gi|84488629|ref|YP_448825|]
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NADH dehydrogenase subunit 4 (mitochondrion) [Stigmochelys pardalis]

Protein Classification

NADH dehydrogenase subunit 4( domain architecture ID 11475907)

NADH dehydrogenase subunit 4 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
ND4 MTH00124
NADH dehydrogenase subunit 4; Provisional
1-457 0e+00

NADH dehydrogenase subunit 4; Provisional


:

Pssm-ID: 214427 [Multi-domain]  Cd Length: 457  Bit Score: 736.62  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629    1 MLKIIIPTILLLPTTMLCKPKQLWPTTLTSSLGIALLSLQWLKPSSELTTFSNYYLGVDPISAPLLTLSCWLTPLMILAS 80
Cdd:MTH00124   1 MLKIILPTIMLIPTTLLSKPKFLWTNTTTYSLLIALLSLQWLKPPYYPTKNLTQWLGIDQISAPLLVLSCWLLPLMILAS 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629   81 QNHLTTEPTPRKRTFITTIIMLQISLILAFSAMELIMFFIAFEATLIPTLVIITRWGNQMERLNAGTYFLFYTLIGSLPL 160
Cdd:MTH00124  81 QNHLQHEPLQRKRTFLTTLILLQTFLILAFSATELTLFYIMFEATLIPTLILITRWGNQPERLSAGTYFLFYTLISSLPL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  161 LVALSFMQTQNGTLSIYMMQLNQPTLTNSWSHSMWWLALLTAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAVLLKLGG 240
Cdd:MTH00124 161 LIAILYLHNQTGTLSLPMLQLTHPTLTNSWTNLLLWLACLMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGG 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  241 YGIIRITMTLDPLSKTLSYPFMVMALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLTQTQWSYTGAITLMIAHG 320
Cdd:MTH00124 241 YGIIRITLLLPPLSNTLHYPFLTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIAATMIQTPWSLSGAMILMIAHG 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  321 MTSSMLFCLANTNYERTHSRVLLLTQNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIVSLFNWSNITILMTGLGT 400
Cdd:MTH00124 321 LTSSMLFCLANTNYERTHSRTLLLTRGLQLLLPLMTTWWLLANLTNMALPPTINLMGELTIMTSLFNWSPTTIILTGLAT 400
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 84488629  401 LITATYTLYMLTTTQWGETPSHTKSIPPTHTREHLLMALHILPMALLMTKPELIWGT 457
Cdd:MTH00124 401 LITASYTLYMFLSTQRGTLPTHITTIQPTHTREHLLMTLHIIPLLLLILKPELISGT 457
 
Name Accession Description Interval E-value
ND4 MTH00124
NADH dehydrogenase subunit 4; Provisional
1-457 0e+00

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214427 [Multi-domain]  Cd Length: 457  Bit Score: 736.62  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629    1 MLKIIIPTILLLPTTMLCKPKQLWPTTLTSSLGIALLSLQWLKPSSELTTFSNYYLGVDPISAPLLTLSCWLTPLMILAS 80
Cdd:MTH00124   1 MLKIILPTIMLIPTTLLSKPKFLWTNTTTYSLLIALLSLQWLKPPYYPTKNLTQWLGIDQISAPLLVLSCWLLPLMILAS 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629   81 QNHLTTEPTPRKRTFITTIIMLQISLILAFSAMELIMFFIAFEATLIPTLVIITRWGNQMERLNAGTYFLFYTLIGSLPL 160
Cdd:MTH00124  81 QNHLQHEPLQRKRTFLTTLILLQTFLILAFSATELTLFYIMFEATLIPTLILITRWGNQPERLSAGTYFLFYTLISSLPL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  161 LVALSFMQTQNGTLSIYMMQLNQPTLTNSWSHSMWWLALLTAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAVLLKLGG 240
Cdd:MTH00124 161 LIAILYLHNQTGTLSLPMLQLTHPTLTNSWTNLLLWLACLMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGG 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  241 YGIIRITMTLDPLSKTLSYPFMVMALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLTQTQWSYTGAITLMIAHG 320
Cdd:MTH00124 241 YGIIRITLLLPPLSNTLHYPFLTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIAATMIQTPWSLSGAMILMIAHG 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  321 MTSSMLFCLANTNYERTHSRVLLLTQNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIVSLFNWSNITILMTGLGT 400
Cdd:MTH00124 321 LTSSMLFCLANTNYERTHSRTLLLTRGLQLLLPLMTTWWLLANLTNMALPPTINLMGELTIMTSLFNWSPTTIILTGLAT 400
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 84488629  401 LITATYTLYMLTTTQWGETPSHTKSIPPTHTREHLLMALHILPMALLMTKPELIWGT 457
Cdd:MTH00124 401 LITASYTLYMFLSTQRGTLPTHITTIQPTHTREHLLMTLHIIPLLLLILKPELISGT 457
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
53-447 2.66e-86

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 272.34  E-value: 2.66e-86
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  53 NYYLGVDPISAPLLTLSCWLTPLMILASQNhlttEPTPRKRTFITTIIMLQISLILAFSAMELIMFFIAFEATLIPTLVI 132
Cdd:COG1008  75 SYHLGVDGISLPLVLLTALLTPLAILASWN----EIKKRPKLYYALLLLLEAGMIGVFLALDLFLFYVFWELMLIPMYFL 150
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629 133 ITRWGNQmERLNAGTYFLFYTLIGSLPLLVALSFMQTQNGTLSIYMMQLNQPTLTNSWShSMWWLALLTAFMIKMPLYGL 212
Cdd:COG1008 151 IGIWGGE-RRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALTFDIAELAAAPLPLTAQ-LLLFLAFFIAFAVKVPMFPF 228
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629 213 HLWLPKAHVEAPIAGSMILAAVLLKLGGYGIIRITMTLDPL-SKTLSYPFMVMALWGVIMTSSICLRQTDLKSLIAYSSV 291
Cdd:COG1008 229 HTWLPDAHVEAPTAGSVLLAGVLLKMGGYGLLRFALPLFPEaSAYFAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSV 308
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629 292 SHMGLVIAATLTQTQWSYTGAITLMIAHGMTSSMLFCLANTNYERTHSRVLLLTQNMQLSLPLMGLWWLLASLTNMALPP 371
Cdd:COG1008 309 SHMGFVLLGIFALNPLGLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASLGLPG 388
                       330       340       350       360       370       380       390
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 84488629 372 TINLMGELTIIVSLFNWSNITILMTGLGTLITATYTLYMLTTTQWGETPSHTKSIPPTHTREHLLMALHILPMALL 447
Cdd:COG1008 389 TSGFVGEFLVLLGAFQVNPWLAILAALGLILTAAYLLWMYQRVFFGPLKEELAELPDLNPRELAVLAPLAALILLL 464
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
112-400 6.09e-74

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 234.13  E-value: 6.09e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629   112 AMELIMFFIAFEATLIPTLVIITRWGNQMERLNAGTYFLFYTLIGSLPLLVALSFMQTQNGTLSIYMMQLNQPTLTNSWS 191
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGLNSSG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629   192 HSMWWLALLTAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAVLLKLGGYGIIRITMTLDPLSKTLSYPFMVMALWGVIM 271
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629   272 TSSICLRQTDLKSLIAYSSVSHMGLVIAATLTQTQWSYTGAITLMIAHGMTSSMLFCLA-NTNYERTHSRVLLLTQNMQL 350
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAgSVIYRRVHTRNIRDYGGLAK 240
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 84488629   351 SLPLMGLWWLLASLTNMALPPTINLMGELTIIVSLFNWSNITILMTGLGT 400
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVG 290
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
53-459 8.84e-72

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 234.45  E-value: 8.84e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629    53 NYYLGVDPISAPLLTLSCWLTPLMILASQNhlttEPTPRKRTFITTIIMLQISLILAFSAMELIMFFIAFEATLIPTLVI 132
Cdd:TIGR01972  70 SYHLGVDGISLLLVLLTALLTLLAILASWE----SIQKRVKEFYALLLLLEAGVIGVFLALDLFLFYVFWEAMLIPMYLL 145
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629   133 ITRWGNQmERLNAGTYFLFYTLIGSLPLLVALSFMQTQNGTLSIYMMQLNQPTltNSWSHSMWWLALLTAFMIKMPLYGL 212
Cdd:TIGR01972 146 IGVWGGP-NRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGTFDLLELLNLPL--PFGVQTWLFLAFFIAFAVKVPLFPL 222
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629   213 HLWLPKAHVEAPIAGSMILAAVLLKLGGYGIIRITMTLDP-LSKTLSYPFMVMALWGVIMTSSICLRQTDLKSLIAYSSV 291
Cdd:TIGR01972 223 HTWLPDAHVEAPTAGSVILAGVLLKMGTYGFLRFNLPLFPdASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSI 302
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629   292 SHMGLVIAATLTQTQWSYTGAITLMIAHGMTSSMLFCLANTNYERTHSRVLLLTQNMQLSLPLMGLWWLLASLTNMALPP 371
Cdd:TIGR01972 303 SHMGFVLLGIFSFNELGISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPG 382
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629   372 TINLMGELTIIVSLFNWSNITILMTGLGTLITATYTLYMLTTTQWGE-TPSHTKSIPPTHTREHLLMALHILPMALLMTK 450
Cdd:TIGR01972 383 TSGFVGEFLILLGSFKVNPVVAFLAALGIVLAAAYMLTLYKRVFFGElSNPEVAEFPDLNGREIAVLAPLVVLILFLGLY 462

                  ....*....
gi 84488629   451 PELIWGTFY 459
Cdd:TIGR01972 463 PNPLLDLTE 471
 
Name Accession Description Interval E-value
ND4 MTH00124
NADH dehydrogenase subunit 4; Provisional
1-457 0e+00

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214427 [Multi-domain]  Cd Length: 457  Bit Score: 736.62  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629    1 MLKIIIPTILLLPTTMLCKPKQLWPTTLTSSLGIALLSLQWLKPSSELTTFSNYYLGVDPISAPLLTLSCWLTPLMILAS 80
Cdd:MTH00124   1 MLKIILPTIMLIPTTLLSKPKFLWTNTTTYSLLIALLSLQWLKPPYYPTKNLTQWLGIDQISAPLLVLSCWLLPLMILAS 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629   81 QNHLTTEPTPRKRTFITTIIMLQISLILAFSAMELIMFFIAFEATLIPTLVIITRWGNQMERLNAGTYFLFYTLIGSLPL 160
Cdd:MTH00124  81 QNHLQHEPLQRKRTFLTTLILLQTFLILAFSATELTLFYIMFEATLIPTLILITRWGNQPERLSAGTYFLFYTLISSLPL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  161 LVALSFMQTQNGTLSIYMMQLNQPTLTNSWSHSMWWLALLTAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAVLLKLGG 240
Cdd:MTH00124 161 LIAILYLHNQTGTLSLPMLQLTHPTLTNSWTNLLLWLACLMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGG 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  241 YGIIRITMTLDPLSKTLSYPFMVMALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLTQTQWSYTGAITLMIAHG 320
Cdd:MTH00124 241 YGIIRITLLLPPLSNTLHYPFLTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIAATMIQTPWSLSGAMILMIAHG 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  321 MTSSMLFCLANTNYERTHSRVLLLTQNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIVSLFNWSNITILMTGLGT 400
Cdd:MTH00124 321 LTSSMLFCLANTNYERTHSRTLLLTRGLQLLLPLMTTWWLLANLTNMALPPTINLMGELTIMTSLFNWSPTTIILTGLAT 400
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 84488629  401 LITATYTLYMLTTTQWGETPSHTKSIPPTHTREHLLMALHILPMALLMTKPELIWGT 457
Cdd:MTH00124 401 LITASYTLYMFLSTQRGTLPTHITTIQPTHTREHLLMTLHIIPLLLLILKPELISGT 457
ND4 MTH00068
NADH dehydrogenase subunit 4; Provisional
1-458 0e+00

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214417 [Multi-domain]  Cd Length: 458  Bit Score: 656.60  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629    1 MLKIIIPTILLLPTTMLCKPKQLWPTTLTSSLGIALLSLQWLKPSSELTTFSNYYLGVDPISAPLLTLSCWLTPLMILAS 80
Cdd:MTH00068   1 MLKIIIPTLMLLPTTWLSPKKWLWTLTTTNSLIIAFLSLMWFNLPSETMNFTNKYFGIDQISSPLLILTCWLLPLMILAS 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629   81 QNHLTTEPTPRKRTFITTIIMLQISLILAFSAMELIMFFIAFEATLIPTLVIITRWGNQMERLNAGTYFLFYTLIGSLPL 160
Cdd:MTH00068  81 QNHLKNEPINRQRTYISMLIILQLTLILAFSATELILFYIFFEATLIPTLIIITRWGNQEERLNAGTYFLFYTLAGSLPL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  161 LVALSFMQTQNGTLSIYMMQLNQPTLTNSWSHSMWWLALLTAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAVLLKLGG 240
Cdd:MTH00068 161 LIALLILQNSLGSLSLILLELMSPMQLMTYTNKIWWLACLLAFMVKMPLYGLHLWLPKAHVEAPIAGSMILAAVLLKLGG 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  241 YGIIRITMTLDPLSKTLSYPFMVMALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLTQTQWSYTGAITLMIAHG 320
Cdd:MTH00068 241 YGILRISILLTPLSKELSYPFIILALWGVLMTSLICLRQTDLKSLIAYSSVSHMGLVIAAALIQTPWSFSGAIILMISHG 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  321 MTSSMLFCLANTNYERTHSRVLLLTQNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIVSLFNWSNITILMTGLGT 400
Cdd:MTH00068 321 LTSSALFCLANTNYERTHSRTLLLLRGAQTILPLMATWWLLSNLSNMALPPSPNLWGELTIMVSLFNWSNWTILITGLGT 400
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 84488629  401 LITATYTLYMLTTTQWGETPSHTKSIPPTHTREHLLMALHILPMALLMTKPELIWGTF 458
Cdd:MTH00068 401 LITAAYTLYMFLMTQRGPLPNHLKTLFPTYTREHLLLALHILPMLLLILKPELISGMF 458
ND4 MTH00110
NADH dehydrogenase subunit 4; Provisional
1-459 0e+00

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177172 [Multi-domain]  Cd Length: 459  Bit Score: 618.83  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629    1 MLKIIIPTILLLPTTMLCKPKQLWPTTLTSSLGIALLSLQWLKPSSELTTFSNYYLGVDPISAPLLTLSCWLTPLMILAS 80
Cdd:MTH00110   1 MLKIIIPTIMLIPLTWLSKNNMIWINTTTYSLLISLISLLLLNQPNDNSLNFSLLFFSDSLSTPLLILTTWLLPLMLMAS 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629   81 QNHLTTEPTPRKRTFITTIIMLQISLILAFSAMELIMFFIAFEATLIPTLVIITRWGNQMERLNAGTYFLFYTLIGSLPL 160
Cdd:MTH00110  81 QHHLSKEPLTRKKLYITMLILLQLFLIMTFTATELIMFYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  161 LVALSFMQTQNGTLSIYMMQLNQPTLTNSWSHSMWWLALLTAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAVLLKLGG 240
Cdd:MTH00110 161 LVALLYIQNNLGSLNFLLLQLWAQPLPNSWSNNLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGG 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  241 YGIIRITMTLDPLSKTLSYPFMVMALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLTQTQWSYTGAITLMIAHG 320
Cdd:MTH00110 241 YGMMRITIILNPLTEFMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHG 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  321 MTSSMLFCLANTNYERTHSRVLLLTQNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIVSLFNWSNITILMTGLGT 400
Cdd:MTH00110 321 LTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMATWWLLASLTNLALPPTINLIGELFVIMSSFSWSNITIILMGLNM 400
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 84488629  401 LITATYTLYMLTTTQWGETPSHTKSIPPTHTREHLLMALHILPMALLMTKPELIWGTFY 459
Cdd:MTH00110 401 LITALYSLYMLITTQRGKLTHHINNIKPSFTRENTLMALHLLPLLLLSLNPKIILGPTY 459
ND4 MTH00127
NADH dehydrogenase subunit 4; Provisional
1-456 0e+00

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177186 [Multi-domain]  Cd Length: 459  Bit Score: 549.56  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629    1 MLKIIIPTILLLPTTMLCKPKQLWPTTLTSSLGIALLSLQWLKPSSELT-TFSNYYLGVDPISAPLLTLSCWLTPLMILA 79
Cdd:MTH00127   1 MLKILIPTLMLIPTTWLTPAKWLWTTTLAHSLLIALASLTWLKNLSETGwSSLNLYMATDPLSTPLLVLTCWLLPLMILA 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629   80 SQNHLTTEPTPRKRTFITTIIMLQISLILAFSAMELIMFFIAFEATLIPTLVIITRWGNQMERLNAGTYFLFYTLIGSLP 159
Cdd:MTH00127  81 SQNHTAPEPINRQRMYITLLTSLQIFLILAFGATEIIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLP 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  160 LLVALSFMQTQNGTLSIYMMQLNQPTLTNSWSHSMWWLALLTAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAVLLKLG 239
Cdd:MTH00127 161 LLVALLLLQNSTGTLSMLTLQYSQPLQLSSWADKLWWAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAVLLKLG 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  240 GYGIIRITMTLDPLSKTLSYPFMVMALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLTQTQWSYTGAITLMIAH 319
Cdd:MTH00127 241 GYGMMRMMVMLDPLTKELSYPFIILALWGIIMTGSICLRQTDLKSLIAYSSVSHMGLVAGGILIQTPWGFTGALILMIAH 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  320 GMTSSMLFCLANTNYERTHSRVLLLTQNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIVSLFNWSNITILMTGLG 399
Cdd:MTH00127 321 GLTSSALFCLANTNYERTHSRTMLLARGLQMILPLMATWWFIASLANLALPPLPNLMGELMIITSLFNWSPWTLALTGLG 400
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 84488629  400 TLITATYTLYMLTTTQWGETPSHTKSIPPTHTREHLLMALHILPMALLMTKPELIWG 456
Cdd:MTH00127 401 TLITAGYSLYMFLMTQRGPLPDHIIALNPSHTREHLLMALHLLPLLLLILKPELIWG 457
ND4 MTH00206
NADH dehydrogenase subunit 4; Provisional
3-454 2.09e-175

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214458 [Multi-domain]  Cd Length: 450  Bit Score: 499.08  E-value: 2.09e-175
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629    3 KIIIPTILLLPTTMLCKPKQLWPTTLTSSLGIALLSLQWLKPSSELT-TFSNYYLGVDPISAPLLTLSCWLTPLMILASQ 81
Cdd:MTH00206   1 KILIPLIMLLLMTILSKKKWLWRSTTFFSFLIALLFLLWFKWSSEVGwSFSNLYLSYDPLSSPLVILSCWLLPLMFLASQ 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629   82 NHLTTEPTPRKRTFITTIIMLQISLILAFSAMELIMFFIAFEATLIPTLVIITRWGNQMERLNAGTYFLFYTLIGSLPLL 161
Cdd:MTH00206  81 NHMKNEPINRQRIYITLLIVLQLFLILFFSSSNLLLFYILFEASLIPTLLLITRWGNQKERLNAGYYFLFYTLIGSLPLL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  162 VALSFMQTQNGTLSIYMMQLNQPTltnSWSHSMWWLALLTAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAVLLKLGGY 241
Cdd:MTH00206 161 IALLFLQNSLGSLSLYILYFSKLT---TWNNNLWWLACILAFLVKLPLYGVHLWLPKAHVEAPVAGSMVLAGVLLKLGGY 237
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  242 GIIRITMTLDPLSKTLSYPFMVMALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLTQTQWSYTGAITLMIAHGM 321
Cdd:MTH00206 238 GMMRIILILGPSTKLSSYFFIILGLWGSIMTSSICLRQTDLKSLIAYSSVSHMSLVTAGILSGSPWGFKGALLLMIAHGL 317
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  322 TSSMLFCLANTNYERTHSRVLLLTQNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIVSLFNWSNITILMTGLGTL 401
Cdd:MTH00206 318 VSSALFCLANLLYERSHTRTILGNRGLQMILPLLSFWWLLFFLANLGLPPFPNLFGELLIITSLFSWSNFTLPLLGLGFL 397
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|...
gi 84488629  402 ITATYTLYMLTTTQWGETPSHTKSIPPTHTREHLLMALHILPMALLMTKPELI 454
Cdd:MTH00206 398 FTAIYSLYMFVMTQHGKTPNHLLSLSPSSTREHLLLFLHLFPVILLILNPNLI 450
ND4 MTH00044
NADH dehydrogenase subunit 4; Validated
1-454 7.21e-156

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214411 [Multi-domain]  Cd Length: 458  Bit Score: 449.81  E-value: 7.21e-156
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629    1 MLKIIIPTILLLPTTMLCKPKQLWPTTLTSSLGIALLSLQWLKPS-SELTTFSNYYLGVDPISAPLLTLSCWLTPLMILA 79
Cdd:MTH00044   1 MITLILLSLGIAITSWIVPKNKLWPISISQSSLISLLSLFLLNNHwSSSWHNLSLSLATDSLSSPLIILSCWLAPLSLLA 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629   80 SQNHLTTEPTPRKRTFITTIIMLQISLILAFSAMELIMFFIAFEATLIPTLVIITRWGNQMERLNAGTYFLFYTLIGSLP 159
Cdd:MTH00044  81 SINHLSNNSPNNQRTFISLIIIILTALIITFSSLELILFYIAFETTLIPTLILITRWGAQKERIQAGLYFLFYTLFGSLP 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  160 LLVALSFMQTQNGTLSIYMMQLNQPTLTNSWSHSMWWLALLTAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAVLLKLG 239
Cdd:MTH00044 161 LLISLIAIYSSSSSLSIPLSELNWLTSLSSNSSSIWWIFCILAFLVKMPIYGFHLWLPKAHVEAPVAGSMILAAILLKLG 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  240 GYGIIRITMTLD-PLSKTLSYPFMVMALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLTQTQWSYTGAITLMIA 318
Cdd:MTH00044 241 GYGLIRLINLFSlPSANNISFILIVFCCWGALITSIICLRQTDLKALIAYSSVGHMSLVAAGIFSGTNWGINGALILMIA 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  319 HGMTSSMLFCLANTNYERTHSRVLLLTQNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIVSLFNWSNITILMTGL 398
Cdd:MTH00044 321 HGLVSSALFCLANILYERSGTRTLSITRGFKLITPLLPLWWLIFCAANLGLPPLPNLIGELLIISSIISWSILSFPIIGL 400
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 84488629  399 GTLITATYTLYMLTTTQWGETPSHTKSIPPTHTREHLLMALHILPMALLMTKPELI 454
Cdd:MTH00044 401 ATVFGAIYSLLIYQLTNSGSFPSWISNVSPISSREHLLIFLHLLPLILIIINPNII 456
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
1-454 1.01e-126

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 374.88  E-value: 1.01e-126
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629    1 MLKIIIPTILLLPTTMLCKPKQLwpttLTSSLGIALLSLQWLKPSSELTTFSNYYLGVDPISAPLLTLSCWLTPLMILAS 80
Cdd:MTH00163   1 MLKFLFMLLFLIPLCFLKNSWWL----VQSLLFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFGLILLSFWICMLMILSS 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629   81 QNHLTTEPTPRKrtFITTIIMLQISLILAFSAMELIMFFIAFEATLIPTLVIITRWGNQMERLNAGTYFLFYTLIGSLPL 160
Cdd:MTH00163  77 ESVYKKNNYSNL--FLFLILFLLIFLLLTFSSMNLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPL 154
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  161 LVALSFMQTQNGTLSIYMMQLNqptltnSWSHSMWWLALLTAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAVLLKLGG 240
Cdd:MTH00163 155 LVGIFYLYNNSGSLSFFLLNFF------GSLNFLWYLSMILAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLGG 228
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  241 YGIIRITMTLDPLSKTLSYPFMVMALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLTQTQWSYTGAITLMIAHG 320
Cdd:MTH00163 229 YGLLRVMSFFSKLGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHG 308
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  321 MTSSMLFCLANTNYERTHSRVLLLTQNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIVSLFNWSNITILMTGLGT 400
Cdd:MTH00163 309 LCSSGLFCLANIIYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMIFLMLLS 388
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....
gi 84488629  401 LITATYTLYMLTTTQWGETPSHTKSIPPTHTREHLLMALHILPMALLMTKPELI 454
Cdd:MTH00163 389 FFSAAYSLYLYSYSQHGKYYSGLYSCSSGKVREYLLLFLHWLPLNLLILKSDLF 442
ND4 MTH00150
NADH dehydrogenase subunit 4; Provisional
52-454 3.90e-118

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214435 [Multi-domain]  Cd Length: 417  Bit Score: 351.83  E-value: 3.90e-118
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629   52 SNYYLGVDPISAPLLTLSCWLTPLMILASQNHLTTEPTPRKrtFITTIIMLQISLILAFSAMELIMFFIAFEATLIPTLV 131
Cdd:MTH00150  16 LSELFSVDSMSSLLISLSLWISGLMMLASQKSVKLRNKSSS--FSLLVLLLCLILVLAFSVSSLLMFYFFFEASLIPTLL 93
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  132 IITRWGNQMERLNAGTYFLFYTLIGSLPLLVALSFMQTQNGTLSIYMMQLnqptLTNSWSHSM-WWLALLTAFMIKMPLY 210
Cdd:MTH00150  94 LILGWGYQPERLQAGMYMMLYTVGASLPLLLVILWMSSSYGSSFMLLISS----LRKLLSSMGlWGLLVFLAFLVKLPMY 169
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  211 GLHLWLPKAHVEAPIAGSMILAAVLLKLGGYGIIRITMTLDPLSKTLSYPFMVMALWGVIMTSSICLRQTDLKSLIAYSS 290
Cdd:MTH00150 170 PFHLWLPKAHVEAPVAGSMILAGILLKLGGYGILRMMMVFSLSSSSFSIFLISLSLWGGVLTSLICLRQSDVKSLIAYSS 249
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  291 VSHMGLVIAATLTQTQWSYTGAITLMIAHGMTSSMLFCLANTNYERTHSRVLLLTQNMQLSLPLMGLWWLLASLTNMALP 370
Cdd:MTH00150 250 VGHMSLVLAGVLSNTSWGWVGALIMMVSHGFCSSGLFCLANYTYEKVHSRSLFLSKGMLMLYPSLSLWWFLFCIINMAAP 329
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  371 PTINLMGELTIIVSLFNWSNITILMTGLGTLITATYTLYMLTTTQWGETPSHTKSIPPTHTREHLLMALHILPMALLMTK 450
Cdd:MTH00150 330 PSLNLLSEIMIFPSLISYSPWFFVPLGLMVFLSGLYSLYLYTSIQHGGSSSFLKPFNELKSSEMLLLLLHWVPLLLLILK 409

                 ....
gi 84488629  451 PELI 454
Cdd:MTH00150 410 SDLL 413
ND4 MTH00014
NADH dehydrogenase subunit 4; Validated
1-454 1.11e-117

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214399 [Multi-domain]  Cd Length: 452  Bit Score: 352.12  E-value: 1.11e-117
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629    1 MLKIIIPTILLLPTTMLcKPKQLWPTTLTSSLGIALLSLQWLKPSSELTTFSNYYLGVDPISAPLLTLSCWLTPLMILAS 80
Cdd:MTH00014   1 MLKLIMPLISLLLLPLI-KYPWSWALTFSTLLLLSLFTLLNLYPMSAPYSMFTESLSSDMLSAPLITLTLWITALMILAS 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629   81 QNHLTTEPTPRkrTFITTIIMLQISLILAFSAMELIMFFIAFEATLIPTLVIITRWGNQMERLNAGTYFLFYTLIGSLPL 160
Cdd:MTH00014  80 FKIFQNNKAPK--TFMTNILILNLILLLTFSASNLLMFYIFFEASLIPTLFLILGWGYQPERLQASFYLMIYTVTASLPL 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  161 LVALSFMQTQNGTLSIYMMQLNQPTLtnsWSHSMWWLALLTAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAVLLKLGG 240
Cdd:MTH00014 158 LMSILLIFYTNNSLSMLMSSMEPPSI---YLMNLWWLITILAFMVKMPLYTVHLWLPKAHVEAPVAGSMILAGILLKLGG 234
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  241 YGIIRITMTLDPLSKTLSYPFMVMALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLTQTQWSYTGAITLMIAHG 320
Cdd:MTH00014 235 YGLLRMSSLFMHINKSLSAPFSSISLVGAVITSLICIRQPDLKSLIAYSSVGHMGLMTAGIMSNTSWGWQGALAMMIAHG 314
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  321 MTSSMLFCLANTNYERTHSRVLLLTQNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIVSLFNWSNITILMTGLGT 400
Cdd:MTH00014 315 LCSSALFALANMTYETTHTRSLFLTKGLLSLFPTMTMWWFLLSAANMAAPPSINLLSEIMLLTSILSSSLSTAILLAITS 394
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....
gi 84488629  401 LITATYTLYMLTTTQWGETPSHTKSIPPTHTREHLLMALHILPMALLMTKPELI 454
Cdd:MTH00014 395 FLAAAYSLFLYTSTQHGSPPSFMNPLNLFTPRNHTLMTLHLVPLFILILKPDLI 448
ND4 MTH00205
NADH dehydrogenase subunit 4; Provisional
5-454 9.21e-112

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214457 [Multi-domain]  Cd Length: 448  Bit Score: 336.95  E-value: 9.21e-112
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629    5 IIPTILLLPTTMLCKPKQLWPTTLTSSLGIALLSLQWLKPSSELTTFSNYYLGVDPISAPLLTLSCWLTPLMILASQNhl 84
Cdd:MTH00205   2 SIFGVFSLLIILFVLKFKDWSFFSNLLLIGLFFSSFFFSNSFLMTSFISSSFSFDSLSLPLIMLSFWISLLMVLASYK-- 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629   85 TTEPTPRKRTFITTIIMLQISLILAFSAMELIMFFIAFEATLIPTLVIITRWGNQMERLNAGTYFLFYTLIGSLPLLVAL 164
Cdd:MTH00205  80 VFKSNKNSKLFTVSVIMLLLILILSFSVDNLLLFYITFEASLIPTLILILGWGYQPERLQASMYMMMYTLCASLPLLIGL 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  165 SFMQTQNGTLSiymMQLNQPTLTNSWSHSMWWLALLTAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAVLLKLGGYGII 244
Cdd:MTH00205 160 FFLNSLNFSLS---MFFNFPLNFSDFYLFLYWIFLMLAFLVKLPMYFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLI 236
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  245 RITMTLDPLSKTLSYPFMVMALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLTQTQWSYTGAITLMIAHGMTSS 324
Cdd:MTH00205 237 RITSMLYKLNSNFSELFFSISLWGGVMTGMICLRQVDLKSLIAYSSVGHMGLMVVGVFSNTSWGMNGAIIMMVAHGLCSS 316
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  325 MLFCLANTNYERTHSRVLLLTQNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIVSLFNWSNITILMTGLGTLITA 404
Cdd:MTH00205 317 GMFALANVNYERTNSRSMLMNKGVLNTFPFLVLMWFLLISCNMAAPPSLNLASEILLIMSLLSSSKISGIPLSLISFLSG 396
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|
gi 84488629  405 TYTLYMLTTTQWGETPSHTKSIPPTHTREHLLMALHILPMALLMTKPELI 454
Cdd:MTH00205 397 AYSLYLYSQSQHGKVSSQISSFLAISEREYYILILHWFPLNILILKLKIF 446
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
53-447 2.66e-86

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 272.34  E-value: 2.66e-86
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  53 NYYLGVDPISAPLLTLSCWLTPLMILASQNhlttEPTPRKRTFITTIIMLQISLILAFSAMELIMFFIAFEATLIPTLVI 132
Cdd:COG1008  75 SYHLGVDGISLPLVLLTALLTPLAILASWN----EIKKRPKLYYALLLLLEAGMIGVFLALDLFLFYVFWELMLIPMYFL 150
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629 133 ITRWGNQmERLNAGTYFLFYTLIGSLPLLVALSFMQTQNGTLSIYMMQLNQPTLTNSWShSMWWLALLTAFMIKMPLYGL 212
Cdd:COG1008 151 IGIWGGE-RRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALTFDIAELAAAPLPLTAQ-LLLFLAFFIAFAVKVPMFPF 228
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629 213 HLWLPKAHVEAPIAGSMILAAVLLKLGGYGIIRITMTLDPL-SKTLSYPFMVMALWGVIMTSSICLRQTDLKSLIAYSSV 291
Cdd:COG1008 229 HTWLPDAHVEAPTAGSVLLAGVLLKMGGYGLLRFALPLFPEaSAYFAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSV 308
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629 292 SHMGLVIAATLTQTQWSYTGAITLMIAHGMTSSMLFCLANTNYERTHSRVLLLTQNMQLSLPLMGLWWLLASLTNMALPP 371
Cdd:COG1008 309 SHMGFVLLGIFALNPLGLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASLGLPG 388
                       330       340       350       360       370       380       390
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 84488629 372 TINLMGELTIIVSLFNWSNITILMTGLGTLITATYTLYMLTTTQWGETPSHTKSIPPTHTREHLLMALHILPMALL 447
Cdd:COG1008 389 TSGFVGEFLVLLGAFQVNPWLAILAALGLILTAAYLLWMYQRVFFGPLKEELAELPDLNPRELAVLAPLAALILLL 464
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
53-442 1.20e-75

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 245.11  E-value: 1.20e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629   53 NYYLGVDPISAPLLTLSCWLTPLMILASQNhlttEPTPRKRTFITTIIMLQISLILAFSAMELIMFFIAFEATLIPTLVI 132
Cdd:PRK05846  75 SYHLGVDGISLLLVVLTALLTPLAVLASWE----EIKKRVKFYMAALLWLEGGVIGVFAALDLLLFYVFFEAMLIPMYFL 150
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  133 ITRWGNQmERLNAGTYFLFYTLIGSLPLLVALSFM----QTQNGTLSI-YMMQLNQPTLTNSWshsmWWLALLTAFMIKM 207
Cdd:PRK05846 151 IGVWGGK-NRIYAATKFFLYTLLGSLLMLVAIIYLvvvyYNATGTFDIaDLLNLPLPPGVQYW----LFLAFFIAFAVKM 225
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  208 PLYGLHLWLPKAHVEAPIAGSMILAAVLLKLGGYGIIRITMTLDPL-SKTLSYPFMVMALWGVIMTSSICLRQTDLKSLI 286
Cdd:PRK05846 226 PMFPLHTWLPDAHVQAPTAGSVLLAGILLKMGAYGLLRFSLPLFPDaSHEFAPIIITLGVIAIIYGALVALAQTDIKKLI 305
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  287 AYSSVSHMGLVIAATLTQTQWSYTGAITLMIAHGMTSSMLFCLANTNYERTHSRVLLLTQNMQLSLPLMGLWWLLASLTN 366
Cdd:PRK05846 306 AYSSISHMGFVTLGIFAGNQLGIQGAIFQMISHGLSSAALFLLVGVLYDRLHTRDIADYGGLAKVMPVLAAFFLFFAMAS 385
                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 84488629  367 MALPPTINLMGELTIIVSLFNWSNITILMTGLGTLITATYTLYMLTTTQWGETPSHTKSIPPTHTREHLLMALHIL 442
Cdd:PRK05846 386 LGLPGTSGFVGEFLILLGSFQVNPVIAFIATTGLILAAVYSLWLYQRVMFGPVKNEVAKLKDLNGRELLILLPLVA 461
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
112-400 6.09e-74

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 234.13  E-value: 6.09e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629   112 AMELIMFFIAFEATLIPTLVIITRWGNQMERLNAGTYFLFYTLIGSLPLLVALSFMQTQNGTLSIYMMQLNQPTLTNSWS 191
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGLNSSG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629   192 HSMWWLALLTAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAVLLKLGGYGIIRITMTLDPLSKTLSYPFMVMALWGVIM 271
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629   272 TSSICLRQTDLKSLIAYSSVSHMGLVIAATLTQTQWSYTGAITLMIAHGMTSSMLFCLA-NTNYERTHSRVLLLTQNMQL 350
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAgSVIYRRVHTRNIRDYGGLAK 240
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 84488629   351 SLPLMGLWWLLASLTNMALPPTINLMGELTIIVSLFNWSNITILMTGLGT 400
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVG 290
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
53-459 8.84e-72

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 234.45  E-value: 8.84e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629    53 NYYLGVDPISAPLLTLSCWLTPLMILASQNhlttEPTPRKRTFITTIIMLQISLILAFSAMELIMFFIAFEATLIPTLVI 132
Cdd:TIGR01972  70 SYHLGVDGISLLLVLLTALLTLLAILASWE----SIQKRVKEFYALLLLLEAGVIGVFLALDLFLFYVFWEAMLIPMYLL 145
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629   133 ITRWGNQmERLNAGTYFLFYTLIGSLPLLVALSFMQTQNGTLSIYMMQLNQPTltNSWSHSMWWLALLTAFMIKMPLYGL 212
Cdd:TIGR01972 146 IGVWGGP-NRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGTFDLLELLNLPL--PFGVQTWLFLAFFIAFAVKVPLFPL 222
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629   213 HLWLPKAHVEAPIAGSMILAAVLLKLGGYGIIRITMTLDP-LSKTLSYPFMVMALWGVIMTSSICLRQTDLKSLIAYSSV 291
Cdd:TIGR01972 223 HTWLPDAHVEAPTAGSVILAGVLLKMGTYGFLRFNLPLFPdASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSI 302
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629   292 SHMGLVIAATLTQTQWSYTGAITLMIAHGMTSSMLFCLANTNYERTHSRVLLLTQNMQLSLPLMGLWWLLASLTNMALPP 371
Cdd:TIGR01972 303 SHMGFVLLGIFSFNELGISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPG 382
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629   372 TINLMGELTIIVSLFNWSNITILMTGLGTLITATYTLYMLTTTQWGE-TPSHTKSIPPTHTREHLLMALHILPMALLMTK 450
Cdd:TIGR01972 383 TSGFVGEFLILLGSFKVNPVVAFLAALGIVLAAAYMLTLYKRVFFGElSNPEVAEFPDLNGREIAVLAPLVVLILFLGLY 462

                  ....*....
gi 84488629   451 PELIWGTFY 459
Cdd:TIGR01972 463 PNPLLDLTE 471
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
51-404 9.11e-67

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 221.46  E-value: 9.11e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629   51 FSNYYLGVDPISAPLLTLSCWLTPLMILASQNHLTTeptpRKRTFITTIIMLQISLILAFSAMELIMFFIAFEATLIPTL 130
Cdd:MTH00217  71 FGPVVFAVDGISIFFLILTALLTPICILISWNSIKF----LIKEFLLCLLVIEILLMGVFTILDLVGFYILFEGILIPMF 146
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  131 VIITRWGNQMERLNAGTYFLFYTLIGSLPLLVALSFMQTQNGTLSiYMMQLNQpTLTNSWSHSMWwLALLTAFMIKMPLY 210
Cdd:MTH00217 147 LIIGIWGSREEKVQASYYFFFYTFIGSVFMLLGIFTLYSYAGTTD-YQALCCL-KIEKELQYFIF-LGFFLSLAIKIPKI 223
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  211 GLHLWLPKAHVEAPIAGSMILAAVLLKLGGYGIIRITMTLDPLSKTLSYPF-MVMALWGVIMTSSICLRQTDLKSLIAYS 289
Cdd:MTH00217 224 PFHIWLPQAHVEAPVAGSVILAGVLLKLGGYGFIRFSWPLLPEASEYFSPLiQTLSLLAIIYGSLTTCRQVDLKRIIAYS 303
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  290 SVSHMGLVIAATLTQTQWSYTGAITLMIAHGMTSSMLFCLANTNYERTHSRVLLLTQNMQLSLPLMGLWWLLASLTNMAL 369
Cdd:MTH00217 304 SVAHMGLVTLGIFSHTIQGLVAAIFLMLAHGLVSSALFIAVTFLYERHHTRLIKYYRGMVITMPLFGILMLLLVLANASI 383
                        330       340       350
                 ....*....|....*....|....*....|....*
gi 84488629  370 PPTINLMGELTIIVSLFNWSNITILMTGLGTLITA 404
Cdd:MTH00217 384 PLSCNFVGEFLSLLAAFEYSYIVGVLASLGMVLSA 418
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
40-404 1.28e-66

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 221.09  E-value: 1.28e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629   40 QWLKPSSELTTFSNYYLGVDPISAPLLTLSCWLTPLMILASQNHLTTeptpRKRTFITTIIMLQISLILAFSAMELIMFF 119
Cdd:MTH00204  63 EWIISPTLNFQWGPLVFAVDGVSLFFILLTTLLIPICILISWKSIKF----LFKEFLLCLLFLEVLLIGVFSVLDLLLFY 138
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  120 IAFEATLIPTLVIITRWGNQMERLNAGTYFLFYTLIGSLPLLVALSFMQTQNGTLSiYMMQLNQ--PTLTNSWSHSMWWL 197
Cdd:MTH00204 139 ILFEGILIPMFLLIGIWGSREEKVRASYYFFFYTFAGSVFMLLGIFQLYSITGTTD-YQILLNIklPLSIQKWLLVGFFL 217
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  198 ALltafMIKMPLYGLHLWLPKAHVEAPIAGSMILAAVLLKLGGYGIIRITMTLDPLSKTLSYPFMVM-ALWGVIMTSSIC 276
Cdd:MTH00204 218 SL----AVKIPQIPFHIWLPQAHVEAPVAGSVILAGILLKLGGYGFLRFSWPLFPAASEYFAPLIVMlSVIAVIYGSLTT 293
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  277 LRQTDLKSLIAYSSVSHMGLVIAATLTQTQWSYTGAITLMIAHGMTSSMLFCLANTNYERTHSRVLLLTQNMQLSLPLMG 356
Cdd:MTH00204 294 CRQVDFKRLIAYSSVAHMGLVPLGLFTHTIEGLVAAVFLMLAHGFVSSALFIAVTFLYERHHTRLIKYYRGLTLTMPLFV 373
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*...
gi 84488629  357 LWWLLASLTNMALPPTINLMGELTIIVSLFNWSNITILMTGLGTLITA 404
Cdd:MTH00204 374 IIMLVLSLANMGFPLSCNFVGEFFSLLAAFEYSLGLGVLVTSGMVWSA 421
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
56-404 7.89e-63

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 211.70  E-value: 7.89e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629   56 LGVDPISAPLLTLSCWLTPLMILASQNHLTTeptpRKRTFITTIIMLQISLILAFSAMELIMFFIAFEATLIPTLVIITR 135
Cdd:MTH00226  98 FAVDGISIYFIILTGFIVPCSILISWHSVKY----LTKSFLICMLILEFLLYAVFSVLDIFMFYILFEGVLIPMYLILGI 173
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  136 WGNQMERLNAGTYFLFYTLIGSLPLLVALSFMQTQNGTLSiYMMQLNQPTLTNSWSHSMWWLALLTAFMIKMPLYGLHLW 215
Cdd:MTH00226 174 WGSREEKMQAAYYFFFYTLIGSVLMLLCLFSLYNIHGTTD-YLTLASCSHVVSEQTQKWIFLGIFLAMAVKIPIFPFHIW 252
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  216 LPKAHVEAPIAGSMILAAVLLKLGGYGIIRITMTLDPL-SKTLSYPFMVMALWGVIMTSSICLRQTDLKSLIAYSSVSHM 294
Cdd:MTH00226 253 LPKAHVEAPVAGSVLLAGILLKLGGYGLVRLSWPILPLgAQNLAPAVIAMGIVGIVYGSFATCRQIDVKRLVAYSSVAHM 332
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  295 GLVIAATLTQTQWSYTGAITLMIAHGMTSSMLFCLANTNYERTHSRVLLLTQNMQLSLPLMGLWWLLASLTNMALPPTIN 374
Cdd:MTH00226 333 GLVSITLVTHDIIGLTGSIFIMLAHGIVSSLLFILVTILYDRHHTRLIKYYRGLSITMPIWGTIMIVTSLANVAVPPSGN 412
                        330       340       350
                 ....*....|....*....|....*....|
gi 84488629  375 LMGELTIIVSLFNWSNITILMTGLGTLITA 404
Cdd:MTH00226 413 FIGEYLSILSSFNWNPIIGVFVCSGVILSA 442
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
53-403 2.49e-50

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 178.30  E-value: 2.49e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629   53 NYYLGVDPISAPLLTLSCWLTPLMILASQNhLTTEPtprkRTFITTIIMLQISLILAFSAMELIMFFIAFEATLIPTLVI 132
Cdd:PRK12561  52 EWSLGVDGLSMPLVLLSGLITTLSIFASWK-VTRKP----RLFYFLMLVLYSAQIGVFLAQDLLLFFLMWELELVPVYLL 126
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  133 ITRWGNQmERLNAGTYFLFYTLIGSLPLLVALSFMQTQNGTLSIYMMQLNQPTLTNSWShSMWWLALLTAFMIKMPLYGL 212
Cdd:PRK12561 127 ISIWGGQ-KRLYAATKFILYTALASIFILVAGLALALSGDTFTFDLAELGAKSYPLALE-LLLYAGFLIAFGVKLPIFPL 204
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  213 HLWLPKAHVEAPIAGSMILAAVLLKLGGYGIIRITMTLDPLSKTLSYPfmVMALWGV--IMTSSIC-LRQTDLKSLIAYS 289
Cdd:PRK12561 205 HTWLPDAHGEASAPVSMILAGVLLKMGGYALIRFNVQMLPDAHVYFAP--ALAILGVvnIIYGALNaFAQDNVKRRLAYS 282
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  290 SVSHMGLVIAATLTQTQWSYTGAITLMIAHGMTSSMLFCLANTNYERTHSRVLLLTQNMQLSLPLMGLWWLLASLTNMAL 369
Cdd:PRK12561 283 SVSHMGFVLLGIAAFTDLGISGAMLQMISHGLIAAALFFLTGVTYERTHTLSIPNMGGLAKVMPKTFALFTASSMASLAL 362
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|.
gi 84488629  370 PPTINLMGELTIIVSLFN-------WSNITILMTGLGTLIT 403
Cdd:PRK12561 363 PGMSGFVSELTVFLGITSsdvysstFRTITILLAAVGLILT 403
ND4 MTH00094
NADH dehydrogenase subunit 4; Provisional
101-395 3.76e-50

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177157 [Multi-domain]  Cd Length: 403  Bit Score: 175.48  E-value: 3.76e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  101 MLQISLILAFSAMELIMFFIAFEATLIPTLVIITRWGNQMERLNAGTYFLFYTLIGSLPLLVALSfmqtqngtLSIYMMQ 180
Cdd:MTH00094  70 LLILICLLFFVSSNMLMLYMFFELSMFPILIMILGYGSQIEKINSSYYLLFYAAFFSFPFLFVYL--------KNFFFFS 141
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  181 LNQPTLTNSWshsMWWLALLTAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAVLLKLGGYGIIRItmtLDPLSKTLSYP 260
Cdd:MTH00094 142 LCYFDFFLSW---EMFFILSLSFMMKFPVYFLHLWLPKAHVEAPTTASMLLAGLLLKLGTAGFLRI---LGSLNFVYNNF 215
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  261 FMVMALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLTQTQWSYTGAITLMIAHGMTSSMLFCLANTNYERTHSR 340
Cdd:MTH00094 216 WIIFSLLGMILSSFCCVFQSDSKSLAAYSSVTHMSFLLLSLVYMSMSGKLSGLMMMLAHGYTSTLMFYLIGEFYHISKSR 295
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 84488629  341 VLLLTQNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIVSLFNWSNITILM 395
Cdd:MTH00094 296 LIYFMNSFFSSSMFFGLIFSLVFLSNSGVPPSLSFFSEFLIISNSFMKNKFSFFF 350
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
56-402 1.46e-47

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 169.17  E-value: 1.46e-47
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  56 LGVDPISAPLLTLSCWLTPLMILASQNHLTTEPtpRKRTFITTIIMLQISLILAFSAMELIMFFIAFEATLIPTLVIITR 135
Cdd:COG0651  72 LVADRLSALFLLLTALVALAVLLYSIGYMRHER--RGRRFYPLFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVAL 149
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629 136 WGNQmERLNAGTYFLFYTLIGSLPLLVALSFMQTQNGTLSIYMMQLNQPTLTNSWSHSMWWLaLLTAFMIKMPLYGLHLW 215
Cdd:COG0651 150 GGTK-EALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAARLAELDPGLLLAAFAL-LLVGFGIKAALFPLHFW 227
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629 216 LPKAHVEAPIAGSMILAAVLLKLGGYGIIRITMTLDP--LSKTLSYPFMVMALWGVIMTSSICLRQTDLKSLIAYSSVSH 293
Cdd:COG0651 228 LPDAYPAAPSPVSALLSGLLTKVGVYAILRVLTLLFGadPALFLGTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQ 307
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629 294 MGLVIAATLTQTQWSYTGAITLMIAHGMTSSMLFCLANTNYERTHSRVLLLTQNMQLSLPLMGLWWLLASLTNMALPPTI 373
Cdd:COG0651 308 IGYILLGLGLGTPLGLAGALFHLLNHALAKALLFLAAGAIERATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLS 387
                       330       340       350
                ....*....|....*....|....*....|...
gi 84488629 374 NLMGELTIIVSLFN----WSNITILMTGLGTLI 402
Cdd:COG0651 388 GFVSKWLLLQAALEagawLLAAVLLLSSLLTLA 420
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
53-435 2.90e-46

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 167.18  E-value: 2.90e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629   53 NYYLGVDPISAPLLTLSCWLTPLMILASQnhlttEPTPRKRTFITTIIMLQISLILAFSAMELIMFFIAFEATLIPTLVI 132
Cdd:PRK06473  72 SYHLGVDGLSLPLLVLNSLLTLIAIYSSD-----ESIQRPRFYYSLLLLLNAGVSGAFLAQDLLLFFLFYELELIPLYLL 146
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  133 ITRWGNQmERLNAGTYFLFYTLIGSLPLLVALSFMQTQNGTLSIYMMQLNQPTLTNSwSHSMWWLALLTAFMIKMPLYGL 212
Cdd:PRK06473 147 IAIWGGQ-RRGYAATKFLLYTAISGILILVSFLGLVWLSGASSFDYEPLRSHTLPLS-TQLLLLAPILVGFGIKIPLVPF 224
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  213 HLWLPKAHVEAPIAGSMILAAVLLKLGGYGIIRITMTLDPLSKTLSYPFM-VMALWGVIMTSSICLRQTDLKSLIAYSSV 291
Cdd:PRK06473 225 HTWLPDAHVEASTPVSVLLAGVLLKLGTYGLLRFGVGLFPEAWVYLAPWLaTWAVVSVLYGASCAIAQKDMKKMVAYSSI 304
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  292 SHMGLVIAATLTQTQWSYTGAITLMIAHGMTSSMLFCLANTNYERTHSR---VLLLTQNMQLSLPLMGLWWLLASLTNMA 368
Cdd:PRK06473 305 GHMGYILLAAAAATPLSILAAVFQMISHGLISALLFLLVGVVYKKTGSRdvdVLRGLLNPERGLPITGSLMILGVMASAG 384
                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 84488629  369 LPPTINLMGELTIIVSLFNWSNITILMTGLGTLITATYTLYMLTTTQWGETPSHTKSIPPTHTREHL 435
Cdd:PRK06473 385 IPGMVGFIAEFLVFRGSFPIFPVQTLLCMIGTGLTAVYFLLLVNRVFFGRLTAELSNLPRVLWSERL 451
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
53-383 3.96e-39

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 148.32  E-value: 3.96e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629   53 NYYLGVDPISAPLLTLSCWLTPLMILASQnhlttEPTPRKRTFITTIIMLQISLILAFSAMELIMFFIAFEATLIPTLVI 132
Cdd:PRK02546  80 TWSVGADGLSMPLILLTGFITTLAVLAAW-----PVTFKPKLFYFLMLAMYGGQIAVFAVQDMLLFFLAWELELIPVYLL 154
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  133 ITRWGNQmERLNAGTYFLFYTLIGSLPLLVALSFMQTQNGTLSIYMMQLNQPTLTNSWsHSMWWLALLTAFMIKMPLYGL 212
Cdd:PRK02546 155 LAIWGGK-KRQYAATKFILYTAGSSLFILLAALAMAFYGDTPTFDMTALAAKDFGLGF-QLLCYAGLLIAYGVKLPIVPL 232
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  213 HLWLPKAHVEAPIAGSMILAAVLLKLGGYGIIRITMTLDPLSKTLSYPFM-VMALWGVIMTSSICLRQTDLKSLIAYSSV 291
Cdd:PRK02546 233 HTWLPDAHGEATAPVHMLLAGILLKMGGYALLRMNAGMLPDAHAQFAPLLiVLGVVNIIYAALTSFAQRNLKRKIAYSSI 312
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  292 SHMGLVIAATLTQTQWSYTGAITLMIAHGMTSSMLFCLANTNYERTHSRVLLLTQNMQLSLPLMGLWWLLASLTNMALPP 371
Cdd:PRK02546 313 SHMGFVLIGIGSFTDLGTSGAMLQMISHGLIGASLFFLVGATYDRTHTLMLDEMGGVGQKMRKMFAMWTACSLASLALPG 392
                        330
                 ....*....|..
gi 84488629  372 TINLMGELTIIV 383
Cdd:PRK02546 393 MSGFVAELMVFV 404
ndhD CHL00011
NADH dehydrogenase subunit 4
56-370 3.61e-38

NADH dehydrogenase subunit 4


Pssm-ID: 176954 [Multi-domain]  Cd Length: 498  Bit Score: 145.09  E-value: 3.61e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629   56 LGVDPISAPLLTLSCWLTPLMILASQnhlttePTPRK-RTFITTIIMLQISLILAFSAMELIMFFIAFEATLIPTLVIIT 134
Cdd:CHL00011  80 LGIDGLSIGPILLTGFITTLATLAAW------PVTRNsRLFYFLMLAMYSGQIGLFSSRDLLLFFIMWELELIPVYLLLS 153
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  135 RWGNQmERLNAGTYFLFYTLIGSLPLLVALSfmqtqngTLSIYM---MQLNQPTLTNSwSHSM-----WWLALLTAFMIK 206
Cdd:CHL00011 154 MWGGK-KRLYSATKFILYTAGGSIFLLIGVL-------GMGLYGsnePTLNFETLANQ-SYPValeilFYIGFLIAYAVK 224
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  207 MPLYGLHLWLPKAHVEAPIAGSMILAAVLLKLGGYGIIRITMTLDPLSKTLSYPF-MVMALWGVIMTSSICLRQTDLKSL 285
Cdd:CHL00011 225 LPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWlVIVGAIQIIYAASTSLGQRNLKKR 304
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  286 IAYSSVSHMGLVIAATLTQTQWSYTGAITLMIAHGMTSSMLFCLANTNYERThsRVLLLTQ--NMQLSLPLMGLWWLLAS 363
Cdd:CHL00011 305 IAYSSVSHMGFIIIGIGSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRI--RLVYLDEmgGIAIPMPKIFTMFSSFS 382

                 ....*..
gi 84488629  364 LTNMALP 370
Cdd:CHL00011 383 MASLALP 389
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
53-329 2.28e-34

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 134.45  E-value: 2.28e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629   53 NYYLGVDPISAPLLTLSCWLTPLMILASqnhltTEPTPRKRTFITTIIMLQISLILAFSAMELIMFFIAFEATLIPTLVI 132
Cdd:PRK07363  72 SYSLGVDGLSLPLLVLNSLLTWIAIYSI-----GENTERPRLYYSLILLINGGIAGALLAQNLLLFFLFYELELIPFYLL 146
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  133 ITRWGNQmERLNAGTYFLFYTLIGSLPLLVALSFMQTQNGTLSIYMMQLNQPTLTNSwSHSMWWLALLTAFMIKMPLYGL 212
Cdd:PRK07363 147 IAIWGGE-KRGYASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSFDYDAISTQNLSLN-TQLILLTGLLLGFGIKIPLVPL 224
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  213 HLWLPKAHVEAPIAGSMILAAVLLKLGGYGIIRITMTLDPLSKTLSYPfmVMALWG---VIMTSSICLRQTDLKSLIAYS 289
Cdd:PRK07363 225 HTWLPDAYTEASPAVAILLGGVLAKLGTYGLLRFGLQLFPQTWSLVAP--GLAIIGtisVIYGALSAIAQKDIKRMVAYS 302
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|
gi 84488629  290 SVSHMGLVIAATLTQTQWSYTGAITLMIAHGMTSSMLFCL 329
Cdd:PRK07363 303 SIGHMGYILVAAAAGTQLSLLGAVAQMISHGLILALLFHL 342
Oxidored_q5_N pfam01059
NADH-ubiquinone oxidoreductase chain 4, amino terminus;
1-109 4.11e-27

NADH-ubiquinone oxidoreductase chain 4, amino terminus;


Pssm-ID: 366442 [Multi-domain]  Cd Length: 110  Bit Score: 104.53  E-value: 4.11e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629     1 MLKIIIPTILLLPTTMLCKPKQLWPTTLTSSLGIALLSLQWLK-PSSELTTFSNYYLGVDPISAPLLTLSCWLTPLMILA 79
Cdd:pfam01059   1 MLKILLPTLMLIPLTFLSKPKWLWTTSTLYSLLLALLSLLLLNnPSNFSWSNLSYFLGIDSLSYPLIILSCWLLPLMILA 80
                          90       100       110
                  ....*....|....*....|....*....|
gi 84488629    80 SQNHLTTEPTPRKRTFITTIIMLQISLILA 109
Cdd:pfam01059  81 SQKHLKSEPNNRQRTFIFLLILLQLFLILT 110
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
56-447 1.27e-24

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 106.12  E-value: 1.27e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629   56 LGVDPISAPLLTLSCWLTPLMILASQnhltTEPTPRKRTFITTIIMLQISLILAFSAMELIMFFIAFEATLIPTLVIITR 135
Cdd:PRK08375  73 LRADSLSALFLLVTSILAIAALLYAI----GYGEHRQTRFYALFLLLLAGLLGALLTADLFNLFVFLEIMSLSSYALVAM 148
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  136 WGNQmERLNAGTYFLFYTLIGSLPLLVALSFMQTQNGTLSIYMMQLNQPTLTnswshsmwwlALLTAF-------MIKMP 208
Cdd:PRK08375 149 GGDR-RALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLAGALAENP----------TVVTAFgfvllalALKAA 217
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  209 LYGLHLWLPKAHVEAPIAGSMILAAVLLKLGGYGIIRITMTL----DPLSKTLSYPFMVMALWGVIMTSSICLRQTDLKS 284
Cdd:PRK08375 218 VFPLHTWLPRAYPAAPPVVTALLSGLVTKVAVYALIRIYFTVfggdFRFALGLGWLLAVLALLSMLVGSLAALGQDDVKR 297
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  285 LIAYSSVSHMGLVIAATLTQTQWSYTGAITLMIAHGMTSSMLFCLANTNYERTHSRVLLLTQNMQLSLPLMGLWWLLASL 364
Cdd:PRK08375 298 VLAYSTVSQMGYILLGLALLTPLALAAGLLHLLHHALMKGALFLAAGAIEVTYGTRRLSELSGLGRRMPLTAAAFAVASL 377
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  365 TNMALPPTINLMGELTIIVSLF---NWSNITILMtgLGTLITATYTLYMLTTTQWGETPSHTksiPPTHTREHLLMALHI 441
Cdd:PRK08375 378 SLIGVPPTSGFVSKWYLVVGAVeagQWLVLAVLL--ASSLLALLYFLRIWYRAFFGPPPPGS---EAPKQEAPLGMLAPS 452

                 ....*.
gi 84488629  442 LPMALL 447
Cdd:PRK08375 453 LALALL 458
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
58-447 9.71e-24

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 103.90  E-value: 9.71e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629   58 VDPISAPLLTLSCWLTPLMILASQNHLTTEPTPRkrTFITTIIMLQISLILAFSAMELIMFFIAFEATLIPTLVIITRWG 137
Cdd:PRK12667  80 VDLLGALLGLLTALVMFLILIYSYWYLEHESGPE--WYYTLLLGLEAGMLGILLTGDAFNLFVMLEVLSISAYGLVAYYR 157
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  138 NQMERLNAGTYFLFYTLIGSLPLLVALSFMQTQNGTL----------SIYMMQLNQPTLTNSWSHSMWWLALLTAFMIKM 207
Cdd:PRK12667 158 DRGDAVEAAIKYALIGAVGTTLYFLALAFLYATFGTLnmadlsakirGLSFPLTGGLAGNPPLALGVALALALWAFTIKA 237
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  208 PLYGLHLWLPKAHVEAPIAGSMILAAVLLKLGGYGIIRITMT-------LDPLSKTLSYPFMVMALWGVIMTSSICLRQT 280
Cdd:PRK12667 238 AIFPNHFWLPDAHPAAPSPVSAMLSGLVVNVGAYAIIRFLYTifgispsLIDFRAALSPILIILGAVSAIIGALMMVVQK 317
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  281 DLKSLIAYSSVSHMGLVIAATLTQTQWSYTGAITLMIAHGMTSSMLFCLANTNYERTHSRVLLLTQNMQLSLPLMGLWWL 360
Cdd:PRK12667 318 DVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIINHAIAKSLLFLASGVFIHAAGTRDIDELAGLGRKMPIASFAFL 397
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  361 LASLTNMALPPTINLMGELTIIVSLFNWSN-ITILMTGLGTLITATYTLYMLTTTQWGETPSHTKSIppthTREHLLMAL 439
Cdd:PRK12667 398 IGALSLVGIPPLNGFFSKLLLFNALLESGFyLPALVLLIASAISLVGYFRAWYSLFFGKPKSGEEVE----HKESPSMSV 473

                 ....*...
gi 84488629  440 HILPMALL 447
Cdd:PRK12667 474 VILVLALA 481
ND4 MTH00062
NADH dehydrogenase subunit 4; Provisional
100-394 1.42e-17

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214413 [Multi-domain]  Cd Length: 417  Bit Score: 84.59  E-value: 1.42e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  100 IMLQISL---ILAFSAMELIMFFIAFEATLIPTLVIITRWGNQMERLNAGTYFLFYTLIGSLPLLVALSFMQTQNGTLSi 176
Cdd:MTH00062  75 FFLFLSLifsILCFCVNNSLLFWFFYELSIIPLLYLLFSESPYSERYLASWYFLGYLLLTSLPLLLCLLYLSLVNGSFN- 153
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  177 ymmqLNQPTLTNSWSHSMWWLaLLTAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAVLLKLGGYGIIRITMTLDPLSkT 256
Cdd:MTH00062 154 ----FSDWGSDDSVSLIVYYV-LSFMFITKVPLFPFHTWLPIVHAEASSPVSIFLSGYIMKLGLLGVYRFCGFIFSGS-F 227
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  257 LSYPFMVMALWGVIMTSSicLRQTDLKSLIAYSSVSHMgLVIAATLTQTQWSYTGAITLM-IAHGMTSSMLFCLANTNYE 335
Cdd:MTH00062 228 LGYLFLCCLFSVFFLITA--CSELDGKRWLAFLSLSHI-LVPVLGLFVGDWSSINLSFFYcLGHGLSAGLVFLLLWCFYE 304
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 84488629  336 RTHSRVLLLTQNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIVSLFNWSNITIL 394
Cdd:MTH00062 305 VSGSRNWVLLKSGINGSLVLRVIVVFSFLSLCSFPPTIQFFCEVFLVSSSFGVLVYLLF 363
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
199-448 2.24e-17

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 84.21  E-value: 2.24e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  199 LLTAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAVLLKLGGYGIIRITMTLD--PLSKTLSYPFMVMALWGVIMTSSIC 276
Cdd:PRK06458 220 LLIGFGTKVGLFPMHAWLPDAHSEAPSPVSALLSGVLLNVALYAVLRYYILIDaaIGSDFPGRLLLIFGLLSVLVAAFFL 299
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  277 LRQTDLKSLIAYSSVSHMGLVIAATLTQTQWSYTGAITLMIAHGMTSSMLFCLANTNYERTHSRVLLLTQNMQLSLPLMG 356
Cdd:PRK06458 300 LRQRDIKRLFAYSSIEHMGLIAFALGIGGPLGIFAALLHMLNHSLTKSAIFFASGNVLQKYGTRDINVIRGLLKVSPLTG 379
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  357 LWWLLASLTNMALPPTINLMGELTIIVSLFN---WSNITILMTGLGTLITATYTLYMLTTtqWGEtpshtksiPPTHTRE 433
Cdd:PRK06458 380 WGLMLGALAIAGMPPFGVFISEFLILTAGLArgpLLIAILLLLLLTLAFAALVRRVAGMV--FGE--------PPEAVNR 449
                        250
                 ....*....|....*
gi 84488629  434 HLLMALHILPMALLM 448
Cdd:PRK06458 450 GDLGWLTTSPMFVHL 464
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
91-403 3.43e-17

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 83.46  E-value: 3.43e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629   91 RKRTFITTIIMLQISLILAFSAMELIMFFIAFEATLIPTLVIITrWGNQMERLNAGTYFLFYTLIGSLPLLVALSFMQTQ 170
Cdd:PRK07234  92 KTRFFYAQLLILHGSVNAAFVCADLISLYVALEVLSIATFLLVA-YPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQA 170
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  171 NGTLSIYMMQLNQPTLtnswshsmwwLALL-TAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAVLLKLGGYGIIRITMT 249
Cdd:PRK07234 171 NGTFAFSGLATADPEA----------FALIaLGLLVKGGIFVSGLWLPLTHSEAEPPVSALLSGVVVKAGVFPLVRCALD 240
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  250 LDPLSKTLSYPFMVMALWGVImtssICLRQTDLKSLIAYSSVSHMGLVIAATLtqtqwsyTGAItLMIAHGMTSSMLFCL 329
Cdd:PRK07234 241 VPGLDLIVRIFGVGTALLGVL----FALLEKDLKRMLAFSTISQLGFILAAPL-------VGGL-YALAHGLVKSTLFLC 308
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 84488629  330 ANTNYERTHSRVLLLTQNMQLSLPLmglwwLLASLTNMALPPTINLMGELTIIVSLFNWSNITILMTGLGTLIT 403
Cdd:PRK07234 309 AGALPSRNFTELISQMLGIGKWIPL-----TMASFSIAGFPLLAGFVSKVLTLKNLLPWQAIALNLAAVGTAAS 377
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
94-327 1.65e-15

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 78.47  E-value: 1.65e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629   94 TFITTIIMLQISLILAFSAMELIMFFIAFEATLIPTLVIITRwGNQMERLNAGTYFLFYTLIGSLPLLVALSFMQTQNGT 173
Cdd:PRK12665 112 IFLPTYLILVAGVSNAFLAGDLFNLYVGFEILLVASYVLLTL-GATAARVRAGVTYVMVSMVSSLLFLIGIALVYAATGT 190
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  174 LSIYMMQL---NQPTLTNSWSHSMwwlaLLTAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAVLLKLGGYGIIRITMTL 250
Cdd:PRK12665 191 LNMADLAVrldELPSGTRTALFAV----LLVAFGIKAAVFPLSFWLPDSYPTAPAPVTAVFAGLLTKVGVYAIIRTHTLL 266
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 84488629  251 DPlSKTLSYPFMVMALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLTQTQWSYTGAITLMIAHGMTSSMLF 327
Cdd:PRK12665 267 FP-GGGLDTLLMVVALLTMVVGILGAIAQSDIKRLLSFTLVSHIGYMVFGIALSTVAGLSGAIYYVAHHITVQTTLF 342
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
110-327 5.93e-15

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 76.96  E-value: 5.93e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  110 FSAMELIMFFIAFEATLIPTLVIITRwGNQMERLNAGTYFLFyTLIGSLPLLVALSFMQTQNGTL---SIYMMQLNQPTL 186
Cdd:PRK08668 115 FLANDLLTLYIFWEIMTFSSFMMVPM-GKKESRKASLKYFVL-SAIGAYAMLYAIFLIYAKTGTFdfaDISQGLINDTST 192
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  187 TNSWshsMWWLALLTAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAVLLKLGGYGIIrITMTLDPLSK----------- 255
Cdd:PRK08668 193 GFAL---IVFLFLLAFGVAKAGIFPLHVWAPDAYSEAPQSFSAVLSGQLSKLGAYGFL-LVLYVLPGTKlfsefgtyrgv 268
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 84488629  256 -TLSYPFMVMALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLTQTQWSYTGAITLMIAHGMTSSMLF 327
Cdd:PRK08668 269 pLFNYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFAGGLFHVFNHALFKGLFF 341
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
2-401 1.08e-14

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 75.78  E-value: 1.08e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629    2 LKIIIPTILLLPTTMLCKPKQLWPTTLTSSLGIA-LLSLQWL-----KPSSELTTFS-----NYYLGVDPISAPLLTLSC 70
Cdd:PRK06525   6 LTLLLPFIGALVVFFLPGRRAAELGVLFAALTTLcMLSLAYAfyqagKVAVTLTLVNlgdvaLFGLVIDPVSVLIGFVVV 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629   71 WLTPLMILASQNHLTT--------EPTPRKRTFITTIIMLQISLILAFSAMELIMFFiafEATLIPTLVIITRWGNQMER 142
Cdd:PRK06525  86 LLGLLVTLYSTGYMSPgnrehpvhEGTGRYYAFLLLFIGAMAGLVYSSTLLGLLLFF---EITGLCSWALISYYQSPKAL 162
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  143 LNAGTYFLFyTLIGSLPLLVALSFMQTQNGTLSIYMMQLNQPTLTnswshSMWWLALLTAFMIKMPLYGLHLWLPKAhVE 222
Cdd:PRK06525 163 RSALKALLI-THIGSLGLYLAAATLFLQTGTFALSALSGLHGSLK-----YLVFLGILFAAWGKSAQLPFYSWLPDA-ME 235
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  223 APIAGSMIL-AAVLLKLGGYGIIRITMTLDPLSKTLSYPFMVMALWGVIMTSSICLRQTDLKSLIAYSSVSHMG---LVI 298
Cdd:PRK06525 236 APTPASAYLhAASMVKVGVYIFARAIQSMGPIPHVIGYVGAVMAIVTLLYGFLMYLPQQDMKRLLAYSTITQLGymfFGL 315
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  299 AATLTQTQWSYTGAITLMIAHGMTSSMLFCLANTNYERTHSRVLLLTQNMQLSLPLMGLWWLLASLTNMALPPTINLMGE 378
Cdd:PRK06525 316 SLAILGSRLALEGSIAYIFNHAFAKSLFFLVAGALSYSCGTRLLPRLRGVLKKLPLVGVGFCVAALAITGVPPFNGFFSK 395
                        410       420
                 ....*....|....*....|...
gi 84488629  379 LTIIVSLFNWSNITILMTGLGTL 401
Cdd:PRK06525 396 FPIFAAGFELSVEYWILLPAMVL 418
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
104-386 1.14e-14

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 76.31  E-value: 1.14e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  104 ISLILAFSAMELIMFFIAFEATLIPTLVIITRWGNQMERLNAGTYFLFYTLIGSLPLLVALSFMQTQNGTLSIYMMQLNQ 183
Cdd:PRK08667 122 LSMLGVVASANTFSFLFFWEIMALSSFFLVMNDYQEEETQRAGIFYFVMTQLSTVFLMLGIIVLFIQTGSFELSPLGASA 201
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  184 PTLtnswshSMWWLALLTAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAVLLKLGGYGIIRITMtlDPLSKTLSYPF-- 261
Cdd:PRK08667 202 GIL------SLVFLLLFLGFGIKAGIIPFHKWLPYAHPASPSNVSALMSGVMLKVAVYGLVRFLM--DVLSPELWWGVli 273
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  262 ----MVMALWGVIMTssicLRQTDLKSLIAYSSVSHMGLVIAATLTQTQWSYTGAITLM-----------IAHGMTSSML 326
Cdd:PRK08667 274 llagSISALLGVIYA----LKEHDLKGLLAYSSIENIGIILMGIGLYVIFGVYGLDTLAllalggalfhsLNHALFKSLL 349
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  327 FCLANTNYERTHSRVLLLTQNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIVSLF 386
Cdd:PRK08667 350 FLTAGSVVHATGTRNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASELLLYESFF 409
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
53-387 1.74e-13

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 72.11  E-value: 1.74e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629   53 NYYLGvdPISAPLLTLSCWLTPLMILASQNHLTTEPtprkrtfITTIIMLQISLILAFSAM----ELIMFFIAFEATLIp 128
Cdd:PRK08377  73 NLYIG--PFAALFVLIIAIVSFIMSIFSLKAVEVEP-------IDKYAMLFLLLMLGATGMiatgDIFNLFVFMEITAI- 142
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  129 TLVIITRWGNQMERLNAGTYFLFYTLIGSLPLLVALSFMQTQNGTLSiyMMQLNQPTLTNSWSHSMWWLALLT-AFMIKM 207
Cdd:PRK08377 143 TAYALTAYNKTGEAAEASMKYIVLGGIGSSFFLIGVALIYGATGTLN--MAHIAQLAGTIDPTVAQVGLALLIfGLAVEA 220
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  208 PLYGLHLWLPKAHVEAPIAGSMILAAVLLKLGGYGIIRITMTLDPLSKTLSYPFMV--MALWGVIMTSSICLRQTDLKSL 285
Cdd:PRK08377 221 ELFPLNAWAPDAYQAAPHPITVMFSAFVVKAGLYAMARILYLMQNANGWSSVLKLViiMATLTVFFAELSALRQKNVKRM 300
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  286 IAYSSVSHMGLVIAATLTQTQWSYTGAITLMIAHGMTSSMLFCLANTNYERTHSRVLLLTQNMQLSLPLMGLWWLLASLT 365
Cdd:PRK08377 301 IAYSSIGQVGMIALALALGTQAGVDAGVFHMINHAIVKALLFLAVGYVGITLGGTEIEKFEGLGKRMPLTALALTIGALS 380
                        330       340
                 ....*....|....*....|..
gi 84488629  366 NMALPPTINLMGELTIIVSLFN 387
Cdd:PRK08377 381 TVGIPLFNVFWSKFRIILAGLS 402
PRK12650 PRK12650
DUF4040 family protein;
112-372 1.74e-13

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 72.77  E-value: 1.74e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  112 AMELIMFFIAFEATLIPTLVIITRWGNQMERLNAGTyfLFYTLIGSLPLLVALSFMQTQNGTLSIYMMqLNQPtltnSWS 191
Cdd:PRK12650 129 ADDVVVLFVAWELVSLASFFLIARSGSGGEAGSIRT--LILTFFGGLTLLAAVAIAATQTGTTSLSGI-LHSD----VWA 201
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  192 HSMWWLALlTAFMIKMPLYG------LHLWLPKAHVEAPIAGSMILAAVLLKLGGYGIIRITMTLDPLSkTLSYPFMVMA 265
Cdd:PRK12650 202 EKPGLTTV-VAVLIAVAAFTksaqfpFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFHDVA-VWNWLLIIVG 279
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  266 LWGVIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLTQTQWSYTGAITLMIAHGMTSSMLFCLANTNYERTHSRVLLLT 345
Cdd:PRK12650 280 MITALMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTLAHALFKSSLFMLIGVVDHQAGTRDIRRL 359
                        250       260
                 ....*....|....*....|....*..
gi 84488629  346 QNMQLSLPLMGLWWLLASLTNMALPPT 372
Cdd:PRK12650 360 GSLWRRMPFTFVSVTIAALSMAAVPPL 386
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
137-397 2.49e-13

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 71.69  E-value: 2.49e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  137 GNQMERLNAGTYFLFYTLIGSLPLLVALSFMQTQNGTLSIYMMQLNQPTLTNSWSHSMWWLALLTAFMIKMPLYGLHLWL 216
Cdd:PRK12662 153 GRDKKALVAAFEYLIIGTIGATFYLIGIGFLYAITGTLNMGDMFLIIQDLPTNRAIQIGVLFIMVGLFIKAALFPFHKWL 232
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  217 PKAHVEAPIAGSMILAAVLLKLGGYGIIRITMT-----LDPLSKTLSYPFMVMALWGVIMTSSICLRQTDLKSLIAYSSV 291
Cdd:PRK12662 233 IQAYSEAPSFISVFFSGTSTKVMIYLIIRIVYDvfkanFVFTTLPFNNVFMILAALAIVFGSVLAILSKDIKRIFAYSSI 312
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  292 SHMGLVIAATLTQTQWSYTGAITLMIAHGMTSSMLFCLANT---NYERTHSRVLLltqNMQLSLPLMGLWWLLASLTNMA 368
Cdd:PRK12662 313 SHIGYIILAVSLNTYYGLAAAVAYIVNHSIVKSALFMVSGSisyHFGTTKLEDCL---NLWKSMPKITLAFVLLSLSLIG 389
                        250       260       270
                 ....*....|....*....|....*....|..
gi 84488629  369 LPPTINLMGELTIIVSLFN---WSNITILMTG 397
Cdd:PRK12662 390 MPPTSGFVAKWYILDAFIKsnaWIGLVVLLVG 421
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
93-327 4.67e-12

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 67.86  E-value: 4.67e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629   93 RTFITTIIMLQISLILAFSAMELIMFFIAFE-ATLIPTLVIITRwgNQMERLNAGTYFLF-------YTLIGsLPLLVAL 164
Cdd:PRK08676 102 KVFYLGFNLLLSVITFAFFSDNLALFWIFAElTTVFSAMLIAIL--SARENIDAALKYIFiastamiFAFIG-LIFLFSL 178
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  165 SFMQTQNGTLSIYMMQLNQPTLTNSWShSMWWLALLTAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAVLLKLGGYGII 244
Cdd:PRK08676 179 TRQALGTGTLNWTELAAHASLLSPSVL-GASFLFIFIGFLAKSGLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYGIL 257
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  245 RITMTL--DPLSKTLSYPFMVMALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLTQTQWSYTGAITLMIAHGMT 322
Cdd:PRK08676 258 RLSALLrqSGAAEQFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAHSLV 337

                 ....*
gi 84488629  323 SSMLF 327
Cdd:PRK08676 338 KSGLF 342
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
95-371 5.00e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 64.73  E-value: 5.00e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629   95 FITTIIMLQISLILAFSAMELIMFFIAFEATLIPTLVIITRWGNQMERLNAGTYFLFYTLIGSLPLLVALSFMQTQNGTL 174
Cdd:PRK08376 123 YYTLILLLELGMLGMAITGDLFNFFVFLEIMSIASYALVAFRNDTWEAIEAGIKYMFVGSLASSMVLLGIALLYGQYGTL 202
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  175 SI----YMMQLNqPTLTNswshsMWWLALL-TAFMIKMPLYGLHLWLPKAHVEAPIAGSMILaaVLLKLGG-YGIIRITM 248
Cdd:PRK08376 203 NMaylaVKMSEN-PTVVA-----KIALALFiAGLAMKSGAVPVHMWLPDAYPAAPSSISAML--LVIKQAGlYALARVLF 274
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  249 TLDPLS---KTLSYPFMVMALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLVI------AATLTQTQWSYTGAITL---- 315
Cdd:PRK08376 275 SIYGPAinlATVGWVIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMLlglgvgLAALGDPAMASYGEIALaggi 354
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 84488629  316 --MIAHGMTSSMLFCLANTNYERTHSRVLLLTQNMQLSLPLMGLWWLLASLTNMALPP 371
Cdd:PRK08376 355 yhIVNHALYKALLFLTAGAVIYETGTRNLNELGGLARTMPKTTIAFLIGAAAIVGLPP 412
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
34-392 5.67e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 64.45  E-value: 5.67e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629   34 IALLSLQWLKPSS---ELTTFSNYYLG--VDPISAPLLTLSCWLTPLMILASQNHLTTE-PTPRKRTFITTIIMLQISLI 107
Cdd:PRK06589  52 ILLIDLLFLKGIRaqfELMDFGNYSIGlhLEPLGLIFLLLIGFLWICALLYTPKYLAINnIDSSSRFLFFFNLTILIGVL 131
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  108 LAFSAmELIMFFIAFEATLIPTLVIITRWGNQMERLNAGTYFLFYTLIGSLPLLVALSFMQTQNGTLSIymmqlnQPTLT 187
Cdd:PRK06589 132 IALSS-DLFTMFVCYELLTISTAFLIGHTRNNISLSGGYKYLKILMISALLLFLPAVILIYTKTGNLDF------VSGGL 204
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  188 NSWSHSMWWLALLTAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAVLLKLGGYGIIRITMTLDPLSKTLSYPFM----- 262
Cdd:PRK06589 205 FSKNQSIILLLMFIYGIAKTAIFPVHSWLPAAMVAHYPVSALLHAVIVVKTGLFCIYKILLYIFGLSYLQRIFAEfnwli 284
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  263 VMALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLTQTQWSYTGAITLMIAHGMTSSMLFCLANTNYERTHSRVL 342
Cdd:PRK06589 285 FIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALLSAFILTPKALGAAILHLVSHSFAKICLFYSMGSIYSLKKEDQV 364
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|
gi 84488629  343 LLTQNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIVSLFNWSNIT 392
Cdd:PRK06589 365 DKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQPW 414
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
100-371 2.62e-10

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 62.60  E-value: 2.62e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  100 IMLQISLILAFSAMELIM-----FFIAFEA-TLIPTLVIITrwgNQMERLNAGTYFLFYTL--IGSLPLLVALSFMQTQN 171
Cdd:PRK06521 115 MGFFYNLFLASMVLVLLAddafsFLVAWETmSLSSWFLVIA---NHREAEIRRAGFLYLLMahAGALAILLAFGLLARES 191
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  172 GTLSIYMMQlnQPTLTNSWSHSMWWLALLtAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAVLLKLGGYGIIRITMTLD 251
Cdd:PRK06521 192 GSYDFAAMR--AAHLSPFWASLVFLLALF-GFGAKAGLVPLHVWLPRAHPAAPSHVSALMSGVMLKVAIYGILRVVFDLL 268
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  252 PLSkTLSYPFMVMALWGVIMTSSI--CLRQTDLKSLIAYSSVSHMGLVI----------------AATLtqtqwSYTGAI 313
Cdd:PRK06521 269 GAP-GWWWGVLVLALGAISAVLGVlyALAEHDLKRLLAYSTIENIGIIFvglglamvfiaygmplLAAL-----ALTAAL 342
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 84488629  314 TLMIAHGMTSSMLFCLANTNYERTHSRVLL----LTQNMqlslPLMGLWWLLASLTNMALPP 371
Cdd:PRK06521 343 YHLLNHALFKSLLFLGAGAVLHATGTRDMEklggLIRRM----PWTAWAFLIGCLAISALPP 400
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
2-323 5.12e-10

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 61.29  E-value: 5.12e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629   2 LKIIIPTILLLPTTMLC---------KPKQLWPTTLTSSLGIALLSLQWLKPSSELTTFSNYYLgVDPISAPLLTLSCWL 72
Cdd:COG1007   4 LLALLPEIILLLGALVLllldlflprRSRRLLAGLALLGLLLALALLLLALGGGTGTAFGGMFV-VDGFALFFKLLILLA 82
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  73 TPLMILASQNHLTTEPTPRKRTFITTIIMLqISLILAFSAMELIMFFIAFEATLIPTLVIITRWGNQMERLNAGT-YFLF 151
Cdd:COG1007  83 ALLVLLLSRDYLERRGLLRGEFYALLLFAT-LGMMLMASANDLLTLFLGLELLSLSLYVLVAFRRDDRRSSEAALkYFLL 161
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629 152 YTLIGSLpLLVALSFMQTQNGTLSIYMMQLNqptLTNSWSHSMWWLA----LLTAFMIKMPLYGLHLWLPKAHVEAPIAG 227
Cdd:COG1007 162 GALSSGF-LLYGISLLYGATGSLNLAGIAAA---LAAGGANSPLLLLglvlVLAGLAFKLSAVPFHMWTPDVYEGAPTPV 237
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629 228 SMILAAVLlKLGGYGI-IRITMT-LDPLSKTLSYPFMVMA----LWGVIMTssicLRQTDLKSLIAYSSVSHMGLVIAAT 301
Cdd:COG1007 238 TAFLATAP-KIAAFAAlLRLLVEaFPGLAADWQLLLAVLAvlsmTVGNLAA----LAQTNVKRMLAYSSIAHAGYLLLGL 312
                       330       340
                ....*....|....*....|..
gi 84488629 302 LTQTQWSYTGAITLMIAHGMTS 323
Cdd:COG1007 313 AAGTPLGVSAALFYLLAYLFMN 334
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
105-401 5.70e-10

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 61.47  E-value: 5.70e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  105 SLILAF-SAM-------ELIMFFIAFEATLIPTLVIITRWGNQMERLNAGTYFLFYTLIGSLPLLVALSFMQTQNGTLSI 176
Cdd:PRK12647  99 SYILLFmASMlglvlsdNLITLFVFWELTSITSFLLIGFNHEREAARRAALQALLVTGGGGLALLAGLILLGNVTGTYSL 178
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  177 YMMQLNQPTLTNS-WSHSMWWLALLTAFMiKMPLYGLHLWLPKAhVEAPIAGSMIL-AAVLLKLGGYGIIRITMTLdplS 254
Cdd:PRK12647 179 SELLASGDVIREHpLYLAILLLVLGGAFT-KSAQFPFHFWLPNA-MEAPTPVSAYLhSATMVKAGIYLLARLNPVL---G 253
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  255 KTLSYPFMVMALWGVIM--TSSICLRQTDLKSLIAYSSVSHMGLVIAATLTQTQWSYTGAITLMIAHGMTSSMLFCLANT 332
Cdd:PRK12647 254 GTPLWQTILPLFGGLTMltGALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSELAIKAAVLFLVAHSLYKGALFMVAGI 333
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 84488629  333 NYERTHSRVLLLTQNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIVSLFNWSNITILMTGLGTL 401
Cdd:PRK12647 334 IDHETGTRDITKLGGLRRAMPITAAAALLAALSMAGLPPLFGFLAKELIYEALLEAPLWSLILTVAAVL 402
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
59-401 8.66e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 60.73  E-value: 8.66e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629   59 DPISAPLLTLSCWLTPLMILASqnhLTTEPTPRKRTFITTIIM-LQISLILAFSAMELIMFFIAFEATLIPTLVIITRWG 137
Cdd:PRK07691  76 DMFAALLVLTSSIITFLVILYS---FQTIGIERERYYYYPSVLfMLAGVNGAFLTGDIFNLFVFFEVMLMASYVLIVIGG 152
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  138 NQMERLNAGTYFLFyTLIGSLPLLVALSFMQTQNGTL-----SIYMMQLNQptlTNSWSHSMWWLALLTAFMIKMPLYGL 212
Cdd:PRK07691 153 TKIQLRESIKYVLI-NVVSSAFFVVAVAILYSVVGTLnmadiSVKIAELSA---GQTGLITVVAILFLFVFATKAGLFPL 228
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  213 HLWLPKAHVEAPIAGSMILAAVLLKLGGYGIIRITMTLDPLSKTLSYPFM-VMALWGVIMTSSICLRQTDLKSLIAYSSV 291
Cdd:PRK07691 229 YFWLPGSYYAPPIAIAALFGALLTKVGVYAIARTFTLFFSHDTSFTHYLIlILALLTIIFGVIGAVAYFDIKKIIIYNIM 308
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  292 SHMGLVIAATLTQTQWSYTGAITLMIAHGMTSSMLFCLANTNYERTHSRVLLLTQNMQLSLPLMGLWWLLASLTNMALPP 371
Cdd:PRK07691 309 IAVGVILVGVAMMTESGMIGAIYYLIHDMIVKAALFLLIGIMIKITGTTDLKKMGGLIKRYPVLGWMFFIAALSLAGIPP 388
                        330       340       350
                 ....*....|....*....|....*....|....
gi 84488629  372 TINLMGELTIIVSLFN----WSNITILMTGLGTL 401
Cdd:PRK07691 389 LSGFYGKFFIVEGTFEagfyVSGIIVLLSSLLVL 422
PRK12646 PRK12646
DUF4040 family protein;
95-370 2.85e-09

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 59.38  E-value: 2.85e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629   95 FITTIIMLQISLILAFSAMELIMFFIAFEATLIPTLVIITRWGNQMERLNAGTYFLFYTLIGSLPLLVALSFMQTQNGTL 174
Cdd:PRK12646 112 FYFYLTLFMFSMIGIVLSDNTILMYVFWELTSVSSFLLISYWYNNGDSQFGAIQSFMITVFGGLALLVGFIMLYIMTGTN 191
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  175 SIYMMQLNQPTLTNS-WSHSMWWLALLTAFMiKMPLYGLHLWLPKAhVEAPIAGSMIL-AAVLLKLGGYGIIRITMTLDp 252
Cdd:PRK12646 192 NITEILGQADHIKNHgLFIPMIFMFLLGAFT-KSAQFPFHIWLPRA-MAAPTPVSAYLhSATMVKAGIFLLFRFTPLLG- 268
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  253 LSKTLSYPFMVMALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLVIA--------ATLTQTQWSYTGAITL------MIA 318
Cdd:PRK12646 269 LSNMYIYIVTFVGLITMLFGSITALKQWDLKGILAYSTISQLGMIMAmvgigggyAQHQQDAIASIYVFVLfaalfhLMN 348
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 84488629  319 HGMTSSMLFCLANTNYERTHSRVLLLTQNMQLSLPLMGLWWLLASLTNMALP 370
Cdd:PRK12646 349 HAIFKCALFMGVGIIDHEAGTRDIRILSGMRQLFPKMNLVMTIAALSMAGVP 400
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
95-439 3.86e-09

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 58.42  E-value: 3.86e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629   95 FITTIIMLQISLILAFSAMELIMFFIAFEATLIPTLVIITrWGNQMERLNAGTYFLFYTLIGSLPLLVALSFMQTQNGTL 174
Cdd:PRK12663 110 FPPFILLLMAGVIGSFLTGDLFNLYVWFEVMLIASFVLIT-LGQEREQLRGAIKYVVLNLIGSWLFLLGIGLLYGTFGTL 188
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  175 SIYMMQLNQPTLTNSWSHSMWWLALLTAFMIKMPLYGLHlWLPKAHVEAPIAGSMILAAVLLKLGGYGIIRI-TMTLDPL 253
Cdd:PRK12663 189 NMAHIAMRLNDMGDTATLTTIALLFLLAFGMKAALFPFM-WLPAAYHTPNTEVAALFAALLTKVGIYALIRVfTLLFPQE 267
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  254 SKTLSYPFMVMALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLTQTQWSYTGAITLMIAHGMTSSMLFCLANTN 333
Cdd:PRK12663 268 RELLHPLLATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLGLALGTPAGINGAIFYLVHDMVVKTALFLIAGSL 347
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  334 YERTHSRVLLLTQNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIVSLFN----WSNITILMTGLGTLITatyTLY 409
Cdd:PRK12663 348 VRLTGYRSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQGALDngayILLALMLITSLITMYS---LFR 424
                        330       340       350
                 ....*....|....*....|....*....|
gi 84488629  410 MLTTTQWGETPSHTKSIPPTHTREHLLMAL 439
Cdd:PRK12663 425 IFFLAYWGDKDGEEVNFKPIPLYRKLPLSI 454
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
115-401 4.11e-09

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 58.63  E-value: 4.11e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629 115 LIMFFIAFEATLIPTLVIITRWGNQMERLNAGTYFLFYTLIGSLPLLVALSFMQTQNGTLSIYMMQLNQPTLTNswshsm 194
Cdd:COG1009 133 LLLLFVFWELVGLCSYLLIGFWYEKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELLAAAPTILS------ 206
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629 195 WWLALLTAFMI------KMPLYGLHLWLPKAhVEAPIAGSMIL-AAVLLKLGGYGIIRITMTLDpLSKTLSYPFMVMALW 267
Cdd:COG1009 207 SPLLTLILLLLllgafgKSAQFPLHFWLPDA-MEGPTPVSALLhAATMVKAGVYLLARLSPLFA-LSPVWLTVVAIIGAI 284
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629 268 GVIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLTQtqwSYTGAITLMIAHGMTSSMLFCLANTNYERTHsrvlllTQN 347
Cdd:COG1009 285 TALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVG---AYVAALFHLLTHAFFKALLFLGAGSVIHATG------TRD 355
                       250       260       270       280       290       300
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629 348 M-QLS-----LPLMGLWWLLASLTNMALPPTINLMGELTIIVSLFNWSNITILMTGLGTL 401
Cdd:COG1009 356 IrKMGglrkkMPITAITFLIGALSLAGIPPFAGFFSKEAILEAALEAGGLGPLLLAVALL 415
PRK12668 PRK12668
Na(+)/H(+) antiporter subunit D;
148-300 9.17e-09

Na(+)/H(+) antiporter subunit D;


Pssm-ID: 237168 [Multi-domain]  Cd Length: 581  Bit Score: 57.60  E-value: 9.17e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  148 YFLFYTLIGSLpLLVALSFMQTQNGTLSIymmqlnqpTLTNSWSHSMWWLALLtAFMIKMPLYGLHLWLPKAHVEAPIAG 227
Cdd:PRK12668 148 YLLVHVLGGVL-LLAGILLHYAETGSFAF--------GAIAGLGGTAAWLILI-GFGVNAAFPPLHAWLPDAYPEATVTG 217
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 84488629  228 SMILAAVLLKLGGYGIIRitmtLDPLSKTLSYPFMVMALWGVIMTssicLRQTDLKSLIAYSSVSHMGLVIAA 300
Cdd:PRK12668 218 SVFLSAFTTKTAVYALAR----AFPGTELLIYIGAAMAVYGVFFA----LLENDLRRLLSYHIVSQVGYMVAG 282
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
95-306 2.71e-08

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 55.72  E-value: 2.71e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629    95 FITTIIMLQISLILAFSAMELIMFFIAFEATLIPTLVIITRWGNQMERLNAGtyfLFYTLIGSLP---LLVALSFMQTQN 171
Cdd:TIGR01770 104 FYILLLFALLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGLKRKSRFSTEAG---LKYFILGAFSsglLLFGISLIYGFT 180
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629   172 GTLSIYMMQLNQPTLTNS-WSHSMWWLALLTAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAVLLKLGGYGIIRITMT- 249
Cdd:TIGR01770 181 GSLNFEDLLLFLSNGMLNiSLLLLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYi 260
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 84488629   250 LDPLSKTLSYPFMVMALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLTQTQ 306
Cdd:TIGR01770 261 LFGFSEAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTL 317
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
4-323 1.08e-07

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 54.06  E-value: 1.08e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629    4 IIIPTILLLPTTML-------CKPKQLWPTTLTSSLGIALLSLQWLKPSSELTTFSNYYLGVDPISAPLLTLSCWLTPLM 76
Cdd:PRK05777  10 LLLPELILLGAAVVlllidafVRRHSRRATLAVLALLLALVALLFVLGAAGGGTAFGGMLVVDGFALFLKGLILLASLLA 89
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629   77 ILASQNHLTTEPTPRkrtFITTIIMLQISLILAFSAMELIMFFIAFEATLIPTLVIITRWGNQMERLNAGtyfLFYTLIG 156
Cdd:PRK05777  90 LLLARPYLEDRGRGE---FYLLVLFALLGMMVMVSANDLLTLFLGLELLSLPLYALAALRRDRRRSLEAA---IKYFVLG 163
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  157 SLP---LLVALSFMQTQNGTLSIYMMQlnqpTLTNSWSHSMWWLALLTAFMI-----KMPLYGLHLWLPKAHVEAPIAGS 228
Cdd:PRK05777 164 ALAsgfLLYGMSLLYGATGSLSFAGIA----KALADGSGNSLLLLFGLVFLLvglafKLSAVPFHMWTPDVYEGAPTPVT 239
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  229 MILAAVLlKLGGYGII-RITMT-LDPLSKTLSYPFMVMALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLTQTQ 306
Cdd:PRK05777 240 AFLATAP-KIAAFAVLlRLLVVaFGGLSEDWQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTA 318
                        330
                 ....*....|....*..
gi 84488629  307 WSYTGAITLMIAHGMTS 323
Cdd:PRK05777 319 EGYSAVLFYLLAYLFMT 335
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
155-390 1.28e-07

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 54.06  E-value: 1.28e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  155 IGSLPLLVALSFMQTQNGTLSiyMMQLNQPTLTNSWSHSMWWLALlTAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAV 234
Cdd:PRK08042 145 LGTLLLAIACWLLWQRYGTLD--LRLLDMRMQQLPLGSDIWLLGV-IGFGLLAGIIPLHGWVPQAHANASAPAAALFSTV 221
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  235 LLKLGGYGIIRITMTLDPLSKTLSYPFMVMALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLV---IAATLTQTQWS--- 308
Cdd:PRK08042 222 VMKIGLLGILTLSLLGGNAPLWWGVALLVLGMITAFVGGLYALMEHNIQRLLAYHTLENIGIIllgLGAGVTGIALEqpa 301
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  309 -----YTGAITLMIAHGMTSSMLFCLANTNYERTHSRVLLLTQNMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIV 383
Cdd:PRK08042 302 lialgLVGGLYHLLNHSLFKSVLFLGAGSVWFRTGHRDIEKLGGIGKKMPVISIAMLVGLMAMAALPPLNGFAGEWVIYQ 381

                 ....*..
gi 84488629  384 SLFNWSN 390
Cdd:PRK08042 382 SFFKLSN 388
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
150-327 3.48e-06

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 49.54  E-value: 3.48e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  150 LFYTLIGSLPLLVALSFMQTQNGTLSIYMMQLNQPTltnSWSHSMWWLALLTAFMIKMPLYGLHLWLPKAhVEAPIAGSM 229
Cdd:PRK12644 163 LLVTTAGGLAMLVGIIILGQAAGTYRLSELLADPPT---GPAVSVAVVLILVGALSKSAIVPFHFWLPGA-MAAPTPVSA 238
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  230 IL-AAVLLKLGGYGIIRITmtlDPLSKTLSYPFMVMALWGVIMTSS--ICLRQTDLKSLIAYSSVSHMGLVIAATLTQTQ 306
Cdd:PRK12644 239 YLhAAAMVKAGIYLVARLA---PGFADVPVWRPTVLVLGLATMLLGgwRALRQHDLKLILAYGTVSQLGFLTVLVGIGTR 315
                        170       180
                 ....*....|....*....|.
gi 84488629  307 WSYTGAITLMIAHGMTSSMLF 327
Cdd:PRK12644 316 DAALAGLAMLLAHALFKAALF 336
PRK06459 PRK06459
hydrogenase 4 subunit B; Validated
116-403 5.37e-06

hydrogenase 4 subunit B; Validated


Pssm-ID: 235806 [Multi-domain]  Cd Length: 585  Bit Score: 48.63  E-value: 5.37e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  116 IMFFIAFEATLIPTLVIITRWGNQMErlnAGTYFLFYTLIGSLPLLVALSFMQTQNGTLSIYMMQLNQPTLTNSWshsmw 195
Cdd:PRK06459  95 LLFLAGWEIMTIPSYVAIALTKKNKR---PAFVFMAFGELSTVLILAGFAWAFIISGTTNFSYLPSPVPLILASF----- 166
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  196 wlalltAFMIKMPLYGLHL--WLPKAHVEAPIAGSMILAAVLLKLGGYGIIRITM-TLDPLSKTLSYPFMVMALWGVIMT 272
Cdd:PRK06459 167 ------GFIIKMGMMPFLVseWLPIAHGNAPSNFSAILSATMTLMGVYGILKMTIlTQTIPIGYFGLTILAIGAFSILFG 240
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  273 SSICLRQTDLKSLIAYSSVSHMGLVIAAT----LTQTQWSYTGAITLM------IAHGMTSSMLFCLANTNYERTHSRVl 342
Cdd:PRK06459 241 ALYAYVSENVKGLLAFSTIENNGAILVALglymVTKQLITSIEHFSLItvilysFAHSVAKTGLFLSSGLQEKQSITYS- 319
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 84488629  343 lltQNMQLSLPLMGLWWLLASLTnmALPPTINLMGELTIIVSLFNWSNITILMTGLGTLIT 403
Cdd:PRK06459 320 ---KKIRNRWIELGLTLLASSLS--GLLPNIGGVASWLLLESLFMFAYVLHNVISILFIVT 375
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
59-370 6.95e-06

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 48.42  E-value: 6.95e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629   59 DPISAPLLTLSCWLTPLMILASQNHLTTEP-TPRKRTFITTIIMLQISLILAFSAMELimfFIAFEATLIPTLVIITRWG 137
Cdd:MTH00032  79 DTLSVTMLLVISSISTLVHIYSTSYMSDDPhVPRFLCYLSLFTFLMMVLVTSDNYLQL---FIGWEGVGVCSYLLVAFWT 155
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  138 NQMERLNAGTYFLFYTLIGSLPLLVALSFMQTQNGTLSIYMMQ---LNQPTLTNSWSHSMWWLALLTAFMI--------- 205
Cdd:MTH00032 156 TRIQANKAAIKAIVVNRVGDVGVILGMVLIYKTIGSLDFLTFNggsVGSGIMDRGYYGGGAYESPLAPFAIigillligc 235
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  206 --KMPLYGLHLWLPKAHVEAPIAGSMILAAVLLKLGGYGIIRITmtldPLSKTLSYPFMVMALWGVI---MTSSICLRQT 280
Cdd:MTH00032 236 igKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSF----PLFEKAPLTLLIITIFGALtafFAATVGLVQN 311
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  281 DLKSLIAYSSVSHMGLVIaaTLTQTQWSYTGAITLMIAHGMTSSMLFCLA-----NTNYERTHSRVLlltQNMQLSLPLM 355
Cdd:MTH00032 312 DLKKVIAYSTCSQLGYMV--LIIGIEGSHNVGLFHLVNHAFFKALLFLSAgsvihSTTVDEQDMRKM---GGLIHSIPFT 386
                        330
                 ....*....|....*
gi 84488629  356 GLWWLLASLTNMALP 370
Cdd:MTH00032 387 YTMMLIGSFSIMGLP 401
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
51-300 1.51e-05

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 47.38  E-value: 1.51e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629   51 FSNYY-LGVDPISAPLLTLSCWLTPLMILASQNHLTTEP-TPRkrtFITTIIMLQISLILAFSAMELIMFFIAFEATLIP 128
Cdd:MTH00020  70 LTVYFgLQFDGLVAIMLLVVTTVSTLVHIFSTAYMRGDPhIPR---FMSYLSLFTFLMVVLVTSDNYLQLFIGWEGVGLC 146
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  129 TLVIITRWGNQMERLNAGTYFLFYTLIGSLPLLVALSFMQTQNGTLSiYMMQLNQPTLTNSWSHSMWWLALLTAFMIKMP 208
Cdd:MTH00020 147 SYLLINFWLTRIEANKAAIKAMLVNRVGDIGLLLAMFLLWDRFGSLD-FSSVFNMVVSAPSSDITLICLFLFIGAVGKSA 225
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  209 LYGLHLWLPKAhVEAPIAGS-MILAAVLLKLGGYGIIRITmtldPLSKTLSYPFMVMALWG---VIMTSSICLRQTDLKS 284
Cdd:MTH00020 226 QLGLHTWLPDA-MEGPTPVSaLIHAATMVTAGVFLLIRSS----PLFEQAPLALIIVTIVGsltVFFAATVGLVQNDLKK 300
                        250
                 ....*....|....*.
gi 84488629  285 LIAYSSVSHMGLVIAA 300
Cdd:MTH00020 301 VIAYSTCSQLGYMVVA 316
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
101-298 2.69e-05

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 46.18  E-value: 2.69e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  101 MLQISLILAFSAMELIMFFIAFEATLIPTLVIITRWGNQMERLNAG-TYFLFYTLIGSLPLL-VALSFMQTQNGTLSIYM 178
Cdd:MTH00196   1 MVALGILCLISSSNWLSVYLAIELQTLSLFILIAQNRGSGYSAEAGlKYFVLGALSSGLFLFgCALLCGTTGGLHLSYIN 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  179 MQLNQPTLTNSWSHSMWWLALLTAFMIKMPLYGLHLWLPKAHVEAPiagsMILAAVLLKLGGYGIIRITMTLDPLSKTLs 258
Cdd:MTH00196  81 LVLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAP----TKTTALLAIVPKLGIFSILVSIGLNVNIL- 155
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 84488629  259 ypfMVMALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLVI 298
Cdd:MTH00196 156 ---LIGGLFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVL 192
ND5 MTH00208
NADH dehydrogenase subunit 5; Provisional
90-300 3.31e-05

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177251 [Multi-domain]  Cd Length: 628  Bit Score: 46.12  E-value: 3.31e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629   90 PRKRTFITTIIMLQISLILAFSAMELIMFFIAFEATLIPTLVIITRWGNQMERLNAGTYFLFYTLIGSLPLLVALSFMQT 169
Cdd:MTH00208 135 PNKNAFFRLLIIFLLNMLILTSSNNLFLLFIGWEGVGFLSFLLISWWTTRNDANSSALQAVIYNRIGDIGIILFLSLSLI 214
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  170 QNGTLSIY-MMQLNQPtltNSWSHSMWWLALLTAFMIKMPLYGLHLWLPKAhVEAPIAGS-------MILAAVLLklggy 241
Cdd:MTH00208 215 NFNSWNLNeILSLNNS---NSFLINILLFGILLAAAGKSAQFGLHPWLPAA-MEGPTPVSallhsstMVVAGVFL----- 285
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 84488629  242 gIIRITMTLDPLSKTLSYPFMVMALwGVIMTSSICLRQTDLKSLIAYSSVSHMGLVIAA 300
Cdd:MTH00208 286 -LIRTSPLISNSPWFLSLCLILGSL-TALFAASTAISQHDIKKIIAYSTTSQLGLMVVA 342
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
154-402 3.50e-05

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 45.65  E-value: 3.50e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  154 LIGSLPLLVALSFMQTQNGTLSIYMMQ------LNQPTLTNSWSHSMWWLA--LLTAFMIKMPLYGLHLWLPKAHVEAPI 225
Cdd:MTH00144  37 LIGFLPLLVYKKKSSESESVVKYFIIQslgsslLIFGSLIMYNLSFSWFSMslLLLGLCLKLGLFPFHFWVPSVMAGLSW 116
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  226 AGSMILAAVLlKLggygIIRITMTLDPLSKTLSYPFMVMALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLtqt 305
Cdd:MTH00144 117 LSCFLLLTWQ-KV----APLFLLSNFLDLYWLAYLLCVISVLSALVGSIGGLNQTQVRALLAYSSISHTGWMLVAIL--- 188
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  306 qWSYTGAITLMIAHGMTSSMLFCLANTNYERTHSRVLlltqnMQLSLPLMGLWWLLASLTNMALPPTINLMGELTIIVSL 385
Cdd:MTH00144 189 -HGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLG-----SLKPSYKTGLSIISLLLSLGGLPPFLGFCSKLLVLISS 262
                        250
                 ....*....|....*...
gi 84488629  386 FNWS-NITILMTGLGTLI 402
Cdd:MTH00144 263 MESSpLLLILLLLLGSLI 280
PRK12666 PRK12666
putative monovalent cation/H+ antiporter subunit D; Reviewed
142-402 3.65e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237166 [Multi-domain]  Cd Length: 528  Bit Score: 46.00  E-value: 3.65e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  142 RLNAGTYFLFYTLIGSLPLLVALSFMQTQNGTLSIYMMQLNQPTLTNSWShsmwWLA------LLTAFMIKMPLYGLHLW 215
Cdd:PRK12666 157 RVRAGLHYVAINLVASSLFLIGVGLIYGVTGTLNMADLAQRIAQLPAADR----ALLeagaalLLVVFLIKAAMWPLNFW 232
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  216 LPKAHVEA--PIAGsmiLAAVLLKLGGYGIIRITMTLDPLSKTLSYPFMVMALWGVIMTSSIC-----LRQTDLKSLIAY 288
Cdd:PRK12666 233 LPPAYAAAsaPVAA---LFAIMTKVGIYAILRLSTLLFGPEAGASAGFGQDWLLPGGLATLAFgaigvLAAQRLRRLAAY 309
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  289 SSVSHMGLVIAATLTQTQWSYTGAITLMIAHGMTSSMLFCLAN-----------------TNYERTHSRVLLLTQNMQLS 351
Cdd:PRK12666 310 LVLVSSGTLLAAIGLGNPAATAAALYYLVHSTLAAAALFLLADlverqrgaaadrlavtpELYDLDEEEEEEVGVAIPAT 389
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 84488629  352 LPLMGLWWLLASLTNMALPPTINLMGELTIIVSLFN--------WSNITILMTGLGTLI 402
Cdd:PRK12666 390 MALLGLLFFICALALAGLPPLSGFLGKFALLQALLNppgagaawWLWALVLLSGLAALI 448
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
116-294 8.56e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 45.20  E-value: 8.56e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  116 IMFFIAFEATLIPTLVIITRWGNQMERLNAGTYFLFYTLIGSLPLLVALSFMQTQNGTLSIYMMqLNQPTLTNSWSHSMW 195
Cdd:PRK12649 134 IQLFIFWELTSITSFMLIGYWRHRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATI-LQDSELIENIKGHPL 212
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  196 WLALLTAFMI----KMPLYGLHLWLPKAhVEAPIAGSMIL-AAVLLKLGGYGIIRITMTLdplSKTLSYPFMV--MALWG 268
Cdd:PRK12649 213 FLITLILIFIgaaaKSAQGPFYIWLPNA-MEAPTPVSAFLhSATMVKAGVYLVARIHPIF---SGTEAWFILVsgTGMIT 288
                        170       180
                 ....*....|....*....|....*.
gi 84488629  269 VIMTSSICLRQTDLKSLIAYSSVSHM 294
Cdd:PRK12649 289 MVLAGFLAFRQTDIKAILAYSTISQL 314
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
196-327 8.86e-05

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 45.01  E-value: 8.86e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  196 WLALLTAF------MIKMPLYGLHLWLPKAhVEAPIAGS-MILAAVLLKLGGYGIIRitmtLDPLSKTLSYPFMVMALWG 268
Cdd:PRK07376 224 WLALLLCIlvflgpMAKSAQFPLHVWLPDA-MEGPTPISaLIHAATMVAAGVFLVAR----MYPVFEQFPAVMTVIAWTG 298
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 84488629  269 VI---MTSSICLRQTDLKSLIAYSSVSHMGLVIAATLTQtqwSYTGAITLMIAHGMTSSMLF 327
Cdd:PRK07376 299 AItafLGASIALTQNDIKKGLAYSTISQLGYMVMAMGCG---AYSAGLFHLMTHAYFKAMLF 357
PRK12645 PRK12645
monovalent cation/H+ antiporter subunit A; Reviewed
115-299 1.24e-04

monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237155 [Multi-domain]  Cd Length: 800  Bit Score: 44.53  E-value: 1.24e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  115 LIMFFIAFEATLIPTLVIITRWGNQMERLNAGTYFLFYTLIGSLPLLVALSFMQTQNGTLSIYMMQLNQPTLTNswsHSM 194
Cdd:PRK12645 132 LIVLYLFWELTSISSFLLISYWYEREASRYGAQKSMLITVFGGLSMLGGFILLYIMTGSFSIREMIANADEIQN---SPL 208
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  195 WWLA----LLTAFMiKMPLYGLHLWLPKAhVEAPIAGSMIL-AAVLLKLGGYGIIRITmtldPLSKTLSYPFMVMALWGV 269
Cdd:PRK12645 209 FIPAmiliLLGAFT-KSAQFPFYIWLPDA-MEAPTPVSAYLhSATMVKAGIYLVARFT----PIFAGSQVWFWTVTLVGL 282
                        170       180       190
                 ....*....|....*....|....*....|...
gi 84488629  270 IM---TSSICLRQTDLKSLIAYSSVSHMGLVIA 299
Cdd:PRK12645 283 ITlfwGSLNAVKQTDLKGILAFSTVSQLGLIMS 315
PRK07390 PRK07390
NAD(P)H-quinone oxidoreductase subunit F; Validated
197-327 7.75e-04

NAD(P)H-quinone oxidoreductase subunit F; Validated


Pssm-ID: 236008 [Multi-domain]  Cd Length: 613  Bit Score: 41.82  E-value: 7.75e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  197 LALLTAFMIKMPLYGLHLWLPKAhVEAPIAGSMILAAVLLKLGGYGIIRItMTLDPLSKTLSYPFMVMALWGVIMTSSIC 276
Cdd:PRK07390 225 LALIAGPTGKCAQFPLHLWLDEA-MEGPNPASILRNSVVVATGAWVLIKL-QPVLALSPVALTVLIVIGTVTAIGASLVA 302
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 84488629  277 LRQTDLKSLIAYSSVSHMGLV-IAATLTQTQWsytgAITLMIAHGMTSSMLF 327
Cdd:PRK07390 303 IAQIDIKRALSYSTSAYLGLVfIAVGLQQPDI----ALLLLLTHAIAKALLF 350
PRK06591 PRK06591
putative monovalent cation/H+ antiporter subunit D; Reviewed
65-344 1.74e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235837 [Multi-domain]  Cd Length: 432  Bit Score: 40.53  E-value: 1.74e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629   65 LLTLSCWLTPLMILASQNHltteptPRKRTFITTIIMLQISLILAFSAMELIMFFIAFEATLIPTLVIITRWGNQMERLN 144
Cdd:PRK06591  93 FLVFCHKITNQTILKYINN------NRKSLFYGILLFAHTGYLGMIATNDFFNLYVFIEISALSSYVLIASGNNPKSLIG 166
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  145 AGTYFLFYTlIGSLPLLVALSFMQTQNGTLSIYMMQLNQPTLTNSWSHSMWWLALLTAFMIKMPLYGLHLWLPKAHVEAP 224
Cdd:PRK06591 167 AFDYLIMGS-IGATLILIAIGFLLSITGSLNMTDIAAYLQEHTNSRIITIAIGFFLIGAILKTAFFPMHFWMMRAYNNTA 245
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  225 IAGSMILAAVLLKLGGYGIIRITMTL---DPLSKTLSYPFMVMALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLVIaaT 301
Cdd:PRK06591 246 SVILVYLAGISTIIGIYIIYKFTYIIigyETIKTAITNFIRPIALATLIIAPYFAYQAKNFKNIIIYSCFTQIGYVF--L 323
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*
gi 84488629  302 LTQTQWSYTGAITLMIAHGMTSSMLFCLA--NTNYERTHSRVLLL 344
Cdd:PRK06591 324 LYVTENGIIILPSLLLADSINKIALFLIDayNESYKREPNKVLII 368
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
90-327 2.51e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 40.32  E-value: 2.51e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629   90 PRKRTFITTIIMLQISLILAFSAMELIMFFIAFEATLIPTLVIITRWGNQMERLNAGTYFLFYTLIGSLPLLVALSFMQT 169
Cdd:MTH00211 107 PNINRFFKYLLLFLIFMLILVSANNLFQLFIGWEGVGIMSFLLISWWYGRSDANTAALQAVIYNRIGDIGLLLSMVWLLL 186
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  170 QNGTLSIymmqlnQPTLTNSWSHSMWWLALLTAFMIKMPLYGLHLWLPKAhVEAPIAGS-------MILAAVLLklggyg 242
Cdd:MTH00211 187 NLNSWEI------SQLFILNLDLTLFLLGLLLAAMGKSAQFGFHPWLPSA-MEGPTPVSallhsstMVVAGVFL------ 253
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  243 IIRitmtldpLSKTLSYPFMVMALWGVI------MTSSICLRQTDLKSLIAYSSVSHMGL-VIAATLTQTQWsytgAITL 315
Cdd:MTH00211 254 LIR-------LSPLFQNNQLILGAVLLLgaltmlFGALCALTQNDIKKIVAFSTTSQLGLmMVTLGLNQPQL----AFLH 322
                        250
                 ....*....|..
gi 84488629  316 MIAHGMTSSMLF 327
Cdd:MTH00211 323 ICTHAFFKAMLF 334
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
19-355 3.22e-03

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 39.68  E-value: 3.22e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629   19 KPKQLW-PTTLTSSLGIALLSLQWLKPSSELTTFSNYYLGVDPISAPLLTLSCWLTPLMILASQNHLTTEPtpRKRTFIT 97
Cdd:PRK08168  27 LTRALWrIAQAASLAGLFLALLGLVLFATGAAWPAAAWLEVSGLGLVMAALVQLLGWVIGRFSHRYLQGEP--GQRRYVR 104
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629   98 TIIMLQISLILAFSAMELIMFFIAFEATLIPTLVIITRWGN-QMERLNAGTYFLFYTLiGSLPLLVALSFMQTQNGTLSI 176
Cdd:PRK08168 105 ALAGVLAAVHLLVLSDHLLVLIAAWAAISLALHRLLCFYPDrPFARLAAHKKFIADRL-AELLLLAAAALAYLEVGSLSL 183
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  177 YMMQLNQPTLTNSWSHSMWWLALLTAFMIKMPLYGLHLWLPKAhVEAPIAGSMILAAVLLKLGGYGIIRITmtldPLSKT 256
Cdd:PRK08168 184 SALWAHLAAQGASPSLQAAALLLVLAVILKTAQLPVHGWLIQV-MEAPTPVSALLHAGVVNLGGFVLIRFA----PLLEQ 258
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  257 LSYPFMVMALWGVIMTSSIC---LRQTDLKSLIAYSSVSHMGLV---IAATLtqtqwsYTGAITLMIAHGMTSSMLFCLA 330
Cdd:PRK08168 259 APPARWLLVLVGLATAVLAGlvmLTRISIKVRLAWSTVAQMGFMlleCGLGL------YELALLHLVAHSLYKAHAFLSA 332
                        330       340
                 ....*....|....*....|....*
gi 84488629  331 NTNYERTHSRVLLLTQNMQLSLPLM 355
Cdd:PRK08168 333 SEAVRDTRLRRLQGPQSAAGVVSLL 357
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
85-396 7.15e-03

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 38.61  E-value: 7.15e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629   85 TTEPTPRKRTFITTIIMlqiSLILAFSAMELIMFFIAFEATLIPTLVIITRWGNQMERLNAGTYFLFYTLiGSLPLLVAL 164
Cdd:MTH00011   1 MMSTFPTMFLFSSTMTL---GTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQAL-GSGLLLLGM 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  165 SFMQTQNGTLSIYMMqlnqptltnswshsmwwLALLTAFMIKMPLYGLHLWLPkaHVEAPIagSMILAAVLLKLGGYGII 244
Cdd:MTH00011  77 TMMWSFPSLLKNITA-----------------LMLLVSLMLKLGMAPCHFWFP--SVMSSI--SWTLCLILSTWQKIAPL 135
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  245 RITMTLDPLSKTLSYPFMVMAlwGVIMTSSICLRQTDLKSLIAYSSVSHMGLViaaTLTQTQWSYTGAITLMIAHGMTSS 324
Cdd:MTH00011 136 SILFFFTSHNILPMMTSMAAM--SALAGGLGGMNQTQLRPLLAYSSIGHMGWM---TMISVFSPSMAILYFMTYIIITTP 210
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 84488629  325 MLFCLANTNYERTHSRVLLLTQNMQLSLPLMGLWWLLAsltnmALPPTINLMGELTIIVSLFNWSNITILMT 396
Cdd:MTH00011 211 LMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLSLG-----GLPPFTGFMPKLMAIETLTSNSMILILLV 277
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
262-371 8.41e-03

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 38.47  E-value: 8.41e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84488629  262 MVMALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLTQTQWSYTGAITLMIAHGMTSSMLFCLANTNYERTHSRV 341
Cdd:PRK06277 270 IALSVLAMVFGVVMALLQTDYKRLLAYHAISQGGYVAAGLALGTPLGIVAGIFHAINHVIYKSALFLGAGIVSYRTKTSN 349
                         90       100       110
                 ....*....|....*....|....*....|
gi 84488629  342 LLLTQNMQLSLPLMGLWWLLASLTNMALPP 371
Cdd:PRK06277 350 LRKLGGLLPVMPVVAFMVLCAKLAISGVPP 379
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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