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Conserved domains on  [gi|84373936|gb|ABC58047|]
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cytochrome b, partial (mitochondrion) [Zosterops kirki]

Protein Classification

cytochrome b family protein( domain architecture ID 581032)

cytochrome b family protein such as formate dehydrogenase subunit gamma or cytochrome b, a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.

Gene Ontology:  GO:0046872|GO:0016491

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Cytochrome_b_N super family cl23723
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-103 7.01e-73

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


The actual alignment was detected with superfamily member MTH00119:

Pssm-ID: 474033 [Multi-domain]  Cd Length: 380  Bit Score: 220.54  E-value: 7.01e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84373936    1 FGSLLGICLVTQIVTGLLLATHYTADTNLAFASVSHMCRNVQFGWLIRNLHANGASFFFICIYFHIGRGFYYGSYLNKET 80
Cdd:MTH00119  34 FGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKET 113

                         90       100
                 ....*....|....*....|...
gi 84373936   81 WNVGVVLLLALMATAFVGYVLPW 103
Cdd:MTH00119 114 WNTGVILLLLLMATAFVGYVLPW 136
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-103 7.01e-73

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 220.54  E-value: 7.01e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84373936    1 FGSLLGICLVTQIVTGLLLATHYTADTNLAFASVSHMCRNVQFGWLIRNLHANGASFFFICIYFHIGRGFYYGSYLNKET 80
Cdd:MTH00119  34 FGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKET 113

                         90       100
                 ....*....|....*....|...
gi 84373936   81 WNVGVVLLLALMATAFVGYVLPW 103
Cdd:MTH00119 114 WNTGVILLLLLMATAFVGYVLPW 136
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-103 3.33e-40

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 131.72  E-value: 3.33e-40
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84373936   1 FGSLLGICLVTQIVTGLLLATHYTADTNLAFASVSHMCRNVQFGWLIRNLHANGASFFFICIYFHIGRGFYYGSYLN--K 78
Cdd:cd00284  25 FGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKKprE 104

                        90       100
                ....*....|....*....|....*
gi 84373936  79 ETWNVGVVLLLALMATAFVGYVLPW 103
Cdd:cd00284 105 LTWVIGVILLLLTMATAFMGYVLPW 129
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-103 1.34e-38

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 132.61  E-value: 1.34e-38
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84373936   1 FGSLLGICLVTQIVTGLLLATHYTADTNLAFASVSHMCRNVQFGWLIRNLHANGASFFFICIYFHIGRGFYYGSY----- 75
Cdd:COG1290  42 FGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYkkpre 121

                        90       100
                ....*....|....*....|....*...
gi 84373936  76 LNketWNVGVVLLLALMATAFVGYVLPW 103
Cdd:COG1290 122 LN---WIIGVLLLLLTMAEAFTGYSLPW 146
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-103 7.13e-35

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 117.87  E-value: 7.13e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84373936     1 FGSLLGICLVTQIVTGLLLATHYTADTNLAFASVSHMCRNVQFGWLIRNLHANGASFFFICIYFHIGRGFYYG--SYLNK 78
Cdd:pfam00033  16 FGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRE 95

                          90       100
                  ....*....|....*....|....*
gi 84373936    79 ETWNVGVVLLLALMATAFVGYVLPW 103
Cdd:pfam00033  96 LTWVIGVILLVLTMSTAFIGYVLPW 120
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-103 7.01e-73

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 220.54  E-value: 7.01e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84373936    1 FGSLLGICLVTQIVTGLLLATHYTADTNLAFASVSHMCRNVQFGWLIRNLHANGASFFFICIYFHIGRGFYYGSYLNKET 80
Cdd:MTH00119  34 FGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKET 113

                         90       100
                 ....*....|....*....|...
gi 84373936   81 WNVGVVLLLALMATAFVGYVLPW 103
Cdd:MTH00119 114 WNTGVILLLLLMATAFVGYVLPW 136
CYTB MTH00131
cytochrome b; Provisional
 1-103 5.69e-65

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 200.26  E-value: 5.69e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84373936    1 FGSLLGICLVTQIVTGLLLATHYTADTNLAFASVSHMCRNVQFGWLIRNLHANGASFFFICIYFHIGRGFYYGSYLNKET 80
Cdd:MTH00131  33 FGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKET 112

                         90       100
                 ....*....|....*....|...
gi 84373936   81 WNVGVVLLLALMATAFVGYVLPW 103
Cdd:MTH00131 113 WNIGVVLLLLVMMTAFVGYVLPW 135
CYTB MTH00074
cytochrome b; Provisional
 1-103 9.37e-65

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 199.91  E-value: 9.37e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84373936    1 FGSLLGICLVTQIVTGLLLATHYTADTNLAFASVSHMCRNVQFGWLIRNLHANGASFFFICIYFHIGRGFYYGSYLNKET 80
Cdd:MTH00074  34 FGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKET 113

                         90       100
                 ....*....|....*....|...
gi 84373936   81 WNVGVVLLLALMATAFVGYVLPW 103
Cdd:MTH00074 114 WNIGVILLFLVMATAFVGYVLPW 136
CYTB MTH00100
cytochrome b; Provisional
 1-103 3.12e-62

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 193.32  E-value: 3.12e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84373936    1 FGSLLGICLVTQIVTGLLLATHYTADTNLAFASVSHMCRNVQFGWLIRNLHANGASFFFICIYFHIGRGFYYGSYLNKET 80
Cdd:MTH00100  33 FGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLET 112

                         90       100
                 ....*....|....*....|...
gi 84373936   81 WNVGVVLLLALMATAFVGYVLPW 103
Cdd:MTH00100 113 WNIGIILLFTVMATAFMGYVLPW 135
CYTB MTH00156
cytochrome b; Provisional
 1-103 3.24e-62

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 192.69  E-value: 3.24e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84373936    1 FGSLLGICLVTQIVTGLLLATHYTADTNLAFASVSHMCRNVQFGWLIRNLHANGASFFFICIYFHIGRGFYYGSYLNKET 80
Cdd:MTH00156  23 FGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHT 102

                         90       100
                 ....*....|....*....|...
gi 84373936   81 WNVGVVLLLALMATAFVGYVLPW 103
Cdd:MTH00156 103 WMSGVIILFLVMATAFLGYVLPW 125
CYTB MTH00191
cytochrome b; Provisional
 1-103 1.89e-61

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 190.90  E-value: 1.89e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84373936    1 FGSLLGICLVTQIVTGLLLATHYTADTNLAFASVSHMCRNVQFGWLIRNLHANGASFFFICIYFHIGRGFYYGSYLNKET 80
Cdd:MTH00191  30 FGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKET 109

                         90       100
                 ....*....|....*....|...
gi 84373936   81 WNVGVVLLLALMATAFVGYVLPW 103
Cdd:MTH00191 110 WNVGVILLILSMATAFLGYVLPW 132
CYTB MTH00034
cytochrome b; Validated
 1-103 5.89e-59

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 184.91  E-value: 5.89e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84373936    1 FGSLLGICLVTQIVTGLLLATHYTADTNLAFASVSHMCRNVQFGWLIRNLHANGASFFFICIYFHIGRGFYYGSYLNKET 80
Cdd:MTH00034  33 FGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIET 112

                         90       100
                 ....*....|....*....|...
gi 84373936   81 WNVGVVLLLALMATAFVGYVLPW 103
Cdd:MTH00034 113 WNIGVILFLLTMLTAFVGYVLPW 135
CYTB MTH00145
cytochrome b; Provisional
 1-103 2.01e-58

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 183.57  E-value: 2.01e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84373936    1 FGSLLGICLVTQIVTGLLLATHYTADTNLAFASVSHMCRNVQFGWLIRNLHANGASFFFICIYFHIGRGFYYGSYLNKET 80
Cdd:MTH00145  34 FGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHT 113

                         90       100
                 ....*....|....*....|...
gi 84373936   81 WNVGVVLLLALMATAFVGYVLPW 103
Cdd:MTH00145 114 WNIGVTLLLLSMGTAFLGYVLPW 136
CYTB MTH00016
cytochrome b; Validated
 1-103 4.84e-55

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 174.87  E-value: 4.84e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84373936    1 FGSLLGICLVTQIVTGLLLATHYTADTNLAFASVSHMCRNVQFGWLIRNLHANGASFFFICIYFHIGRGFYYGSYLNKET 80
Cdd:MTH00016  34 FGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMET 113

                         90       100
                 ....*....|....*....|...
gi 84373936   81 WNVGVVLLLALMATAFVGYVLPW 103
Cdd:MTH00016 114 WNIGVILLLLTMATAFLGYVLPW 136
CYTB MTH00022
cytochrome b; Validated
 1-103 8.81e-47

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 153.32  E-value: 8.81e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84373936    1 FGSLLGICLVTQIVTGLLLATHYTADTNLAFASVSHMCRNVQFGWLIRNLHANGASFFFICIYFHIGRGFYYGSYLNKET 80
Cdd:MTH00022  32 FGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHV 111

                         90       100
                 ....*....|....*....|...
gi 84373936   81 WNVGVVLLLALMATAFVGYVLPW 103
Cdd:MTH00022 112 WNVGVVIFLLTMATAFMGYVLPW 134
CYTB MTH00053
cytochrome b; Provisional
 1-103 9.64e-45

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 148.32  E-value: 9.64e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84373936    1 FGSLLGICLVTQIVTGLLLATHYTADTNLAFASVSHMCRNVQFGWLIRNLHANGASFFFICIYFHIGRGFYYGSYLNKET 80
Cdd:MTH00053  34 FGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIV 113

                         90       100
                 ....*....|....*....|...
gi 84373936   81 WNVGVVLLLALMATAFVGYVLPW 103
Cdd:MTH00053 114 WNVGVLIFLLMILTAFIGYVLPW 136
CYTB MTH00224
cytochrome b; Provisional
 1-103 1.66e-43

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 145.06  E-value: 1.66e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84373936    1 FGSLLGICLVTQIVTGLLLATHYTADTNLAFASVSHMCRNVQFGWLIRNLHANGASFFFICIYFHIGRGFYYGSYLNKET 80
Cdd:MTH00224  34 YGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSET 113

                         90       100
                 ....*....|....*....|...
gi 84373936   81 WNVGVVLLLALMATAFVGYVLPW 103
Cdd:MTH00224 114 WNIGVILFILTMATAFLGYVLPW 136
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-103 3.33e-40

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 131.72  E-value: 3.33e-40
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84373936   1 FGSLLGICLVTQIVTGLLLATHYTADTNLAFASVSHMCRNVQFGWLIRNLHANGASFFFICIYFHIGRGFYYGSYLN--K 78
Cdd:cd00284  25 FGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKKprE 104

                        90       100
                ....*....|....*....|....*
gi 84373936  79 ETWNVGVVLLLALMATAFVGYVLPW 103
Cdd:cd00284 105 LTWVIGVILLLLTMATAFMGYVLPW 129
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-103 1.34e-38

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 132.61  E-value: 1.34e-38
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84373936   1 FGSLLGICLVTQIVTGLLLATHYTADTNLAFASVSHMCRNVQFGWLIRNLHANGASFFFICIYFHIGRGFYYGSY----- 75
Cdd:COG1290  42 FGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYkkpre 121

                        90       100
                ....*....|....*....|....*...
gi 84373936  76 LNketWNVGVVLLLALMATAFVGYVLPW 103
Cdd:COG1290 122 LN---WIIGVLLLLLTMAEAFTGYSLPW 146
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-103 7.13e-35

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 117.87  E-value: 7.13e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84373936     1 FGSLLGICLVTQIVTGLLLATHYTADTNLAFASVSHMCRNVQFGWLIRNLHANGASFFFICIYFHIGRGFYYG--SYLNK 78
Cdd:pfam00033  16 FGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRE 95

                          90       100
                  ....*....|....*....|....*
gi 84373936    79 ETWNVGVVLLLALMATAFVGYVLPW 103
Cdd:pfam00033  96 LTWVIGVILLVLTMSTAFIGYVLPW 120
CYTB MTH00033
cytochrome b; Provisional
 1-103 7.45e-35

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 122.35  E-value: 7.45e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84373936    1 FGSLLGICLVTQIVTGLLLATHYTADTNLAFASVSHMCRNVQFGWLIRNLHANGASFFFICIYFHIGRGFYYGSYLNKET 80
Cdd:MTH00033  30 FGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLT 109

                         90       100
                 ....*....|....*....|...
gi 84373936   81 WNVGVVLLLALMATAFVGYVLPW 103
Cdd:MTH00033 110 WIVGVLIFFIMMLTAFIGYVLPW 132
CYTB MTH00086
cytochrome b; Provisional
 1-103 1.68e-29

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 107.72  E-value: 1.68e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84373936    1 FGSLLGICLVTQIVTGLLLATHYTADTNLAFASVSHMCRNVQFGWLIRNLHANGASFFFICIYFHIGRGFYYGSYLNKET 80
Cdd:MTH00086  22 FGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKV 101

                         90       100
                 ....*....|....*....|...
gi 84373936   81 WNVGVVLLLALMATAFVGYVLPW 103
Cdd:MTH00086 102 WISGLTIYLLVMMEAFMGYVLVW 124
CYTB MTH00046
cytochrome b; Validated
 2-103 9.41e-24

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 92.35  E-value: 9.41e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84373936    2 GSLLGICLVTQIVTGLLLATHYTADTNLAFASVSHMCRNVQFGWLIRNLHANGASFFFICIYFHIGRGFYYGSYLNKETW 81
Cdd:MTH00046  25 GFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVW 104

                         90       100
                 ....*....|....*....|..
gi 84373936   82 NVGVVLLLALMATAFVGYVLPW 103
Cdd:MTH00046 105 NVGFILYLLVMVEAFLGYILPW 126
PRK03735 PRK03735
cytochrome b6; Provisional
 1-103 8.74e-18

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 74.75  E-value: 8.74e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84373936    1 FGSLLGICLVTQIVTGLLLATHYTADTNLAFASVSHMCRNVQFGWLIRNLHANGASFFFICIYFHIGRGFYYGSYLNKE- 79
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                         90       100
                 ....*....|....*....|....*
gi 84373936   80 -TWNVGVVLLLALMATAFVGYVLPW 103
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLPW 148
petB CHL00070
cytochrome b6
 1-103 2.89e-13

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 62.43  E-value: 2.89e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84373936    1 FGSLLGICLVTQIVTGLLLATHYTADTNLAFASVSHMCRNVQFGWLIRNLHANGASFFFICIYFHIGRGFYYGSYLNKE- 79
Cdd:CHL00070  36 LGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRe 115

                         90       100
                 ....*....|....*....|....*
gi 84373936   80 -TWNVGVVLLLALMATAFVGYVLPW 103
Cdd:CHL00070 116 lTWVTGVVLAVLTVSFGVTGYSLPW 140
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
56-103 8.44e-10

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 52.63  E-value: 8.44e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 84373936    56 SFFFICIYFHIGRGFYYGSYLNKE--TWNVGVVLLLALMATAFVGYVLPW 103
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPD 50
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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