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Conserved domains on  [gi|8395619|ref|NP_059338|]
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NADH dehydrogenase subunit 3 (mitochondrion) [Danio rerio]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009581)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 1-116 9.29e-71

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 206.69  E-value: 9.29e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8395619     1 MNLFATILIIMTTLSLVLALVSFWLPQMNSDTEKLSPYECGFDPLGSARLPFSLRFFLVAVLFPLFDLEIALLLPLPWGD 80
Cdd:MTH00136   1 MNLITTILTITIALSLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGD 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 8395619    81 QLNNPMETLFWAMTVLILLTLGLAYEWAQGGLEWAE 116
Cdd:MTH00136  81 QLPSPLLTFFWATAVLILLTLGLIYEWLQGGLEWAE 116
 
Name Accession Description Interval E-value
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 1-116 9.29e-71

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 206.69  E-value: 9.29e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8395619     1 MNLFATILIIMTTLSLVLALVSFWLPQMNSDTEKLSPYECGFDPLGSARLPFSLRFFLVAVLFPLFDLEIALLLPLPWGD 80
Cdd:MTH00136   1 MNLITTILTITIALSLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGD 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 8395619    81 QLNNPMETLFWAMTVLILLTLGLAYEWAQGGLEWAE 116
Cdd:MTH00136  81 QLPSPLLTFFWATAVLILLTLGLIYEWLQGGLEWAE 116
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
20-113 4.33e-30

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 103.27  E-value: 4.33e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8395619     20 LVSFWLPQMNSDTEKLSPYECGFDPLGSARLPFSLRFFLVAVLFPLFDLEIALLlpLPWGDQLNNPMETLFWAMTVLIL- 98
Cdd:pfam00507   2 LLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFL--FPWAVSFRELGWFGFVEMLIFIAi 79

                          90
                  ....*....|....*
gi 8395619     99 LTLGLAYEWAQGGLE 113
Cdd:pfam00507  80 LLVGLVYAWKKGALE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 8-114 2.74e-24

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 89.02  E-value: 2.74e-24
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8395619    8 LIIMTTLSLVLALVSFWLPQMNSDTEKLSPYECGFDPLGSARLPFSLRFFLVAVLFPLFDLEIALLlpLPWGDQLNNPME 87
Cdd:COG0838  12 LLVALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFL--FPWAVVFRELGW 89

                        90       100
                ....*....|....*....|....*...
gi 8395619   88 TLFWAMTV-LILLTLGLAYEWAQGGLEW 114
Cdd:COG0838  90 FGLIEMLVfIAILLVGLIYAWKKGALEW 117
 
Name Accession Description Interval E-value
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 1-116 9.29e-71

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 206.69  E-value: 9.29e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8395619     1 MNLFATILIIMTTLSLVLALVSFWLPQMNSDTEKLSPYECGFDPLGSARLPFSLRFFLVAVLFPLFDLEIALLLPLPWGD 80
Cdd:MTH00136   1 MNLITTILTITIALSLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGD 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 8395619    81 QLNNPMETLFWAMTVLILLTLGLAYEWAQGGLEWAE 116
Cdd:MTH00136  81 QLPSPLLTFFWATAVLILLTLGLIYEWLQGGLEWAE 116
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 3-116 9.69e-60

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 179.03  E-value: 9.69e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8395619     3 LFATILIIMTTLSLVLALVSFWLPQMNSDTEKLSPYECGFDPLGSARLPFSLRFFLVAVLFPLFDLEIALLLPLPWGDQL 82
Cdd:MTH00069   1 LIMLMLLISTILSLILITISFWLPLNNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTPWASQL 80

                         90       100       110
                 ....*....|....*....|....*....|....
gi 8395619    83 NNPMETLFWAMTVLILLTLGLAYEWAQGGLEWAE 116
Cdd:MTH00069  81 NTPTNTLFWSTLILILLTLGLIYEWIQGGLEWAE 114
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 2-115 2.55e-53

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 162.74  E-value: 2.55e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8395619     2 NLFATILIIMTTLSLVLALVSFWLPQMNSDTEKLSPYECGFDPLGSARLPFSLRFFLVAVLFPLFDLEIALLLPLPWGDQ 81
Cdd:MTH00113   1 MNLISMLTISLALSTILTTLNFWLTQTKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIN 80

                         90       100       110
                 ....*....|....*....|....*....|....
gi 8395619    82 LNNPMETLFWAMTVLILLTLGLAYEWAQGGLEWA 115
Cdd:MTH00113  81 LTTPTTTLTWATIILTLLTLGLIYEWLQGGLEWA 114
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-116 6.78e-52

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 158.95  E-value: 6.78e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8395619     1 MNLFATiLIIMTTLSLVLALVSFWLPQMNSDTEKLSPYECGFDPLGSARLPFSLRFFLVAVLFPLFDLEIALLLPLPWGD 80
Cdd:MTH00106   1 MNLMLT-LLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAS 79

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 8395619    81 QLNNPMETLFWAMTVLILLTLGLAYEWAQGGLEWAE 116
Cdd:MTH00106  80 QTNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 1-116 5.68e-43

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 136.65  E-value: 5.68e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8395619     1 MNLFATILIIMTTLSLVLALVSFWLPQMNSDTEKLSPYECGFDPLGSARLPFSLRFFLVAVLFPLFDLEIALLLPLPWGD 80
Cdd:MTH00042   1 MTNLIFFLLIILILTSLLLLAGHFLPSRSPDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPAT 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 8395619    81 QLNNPMETLFWAMTVLILLTLGLAYEWAQGGLEWAE 116
Cdd:MTH00042  81 LITNPSTLLPISLIFLIILTIGLVYEWVNGGLEWAE 116
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 1-114 6.94e-40

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 128.48  E-value: 6.94e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8395619     1 MNLFATILIIMTTLSLVLALVSFWLPQMNSDTEKLSPYECGFDPLGSARLPFSLRFFLVAVLFPLFDLEIALLLPLPWGD 80
Cdd:MTH00203   1 MNLIMLFFLIALLLSLILLFIAFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWSN 80

                         90       100       110
                 ....*....|....*....|....*....|....
gi 8395619    81 QLNNPmeTLFWAMTVLILLTLGLAYEWAQGGLEW 114
Cdd:MTH00203  81 QLSSL--SLLLAFLFLILLTLGLIYEWLQGGLEW 112
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-116 1.71e-31

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 107.64  E-value: 1.71e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8395619     1 MNLFATILIIMTTLSLVLALVSFWLPQM-NSDTEKLSPYECGFDPLGSARLPFSLRFFLVAVLFPLFDLEIALLLPLPWG 79
Cdd:MTH00148   1 MLSILLSLLFALILSPVLLLLGLVLSKRsYSDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQS 80

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 8395619    80 DQLNNPMETLFWAMTVLILLTLGLAYEWAQGGLEWAE 116
Cdd:MTH00148  81 LGSSFSVWSLTSLFIFLLILILGLFHEWNEGSLDWVS 117
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 2-114 1.88e-30

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 104.86  E-value: 1.88e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8395619     2 NLFATILIIMTTLSLVLALVSFWLPQMNSDTEKLSPYECGFDPLGSARLPFSLRFFLVAVLFPLFDLEIALLLPLPWGDQ 81
Cdd:MTH00161   1 MILIILLIILLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFK 80

                         90       100       110
                 ....*....|....*....|....*....|...
gi 8395619    82 LNNPMETLFWAMTVLILLTLGLAYEWAQGGLEW 114
Cdd:MTH00161  81 TSNMMSWLITSSFFILILLLGLYYEWNQGALEW 113
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
20-113 4.33e-30

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 103.27  E-value: 4.33e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8395619     20 LVSFWLPQMNSDTEKLSPYECGFDPLGSARLPFSLRFFLVAVLFPLFDLEIALLlpLPWGDQLNNPMETLFWAMTVLIL- 98
Cdd:pfam00507   2 LLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFL--FPWAVSFRELGWFGFVEMLIFIAi 79

                          90
                  ....*....|....*
gi 8395619     99 LTLGLAYEWAQGGLE 113
Cdd:pfam00507  80 LLVGLVYAWKKGALE 94
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 4-115 1.62e-27

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 97.63  E-value: 1.62e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8395619     4 FATILIIMTTLSLVLALVSFWLPQMNSDTEKLSPYECGFDPLGSARLPFSLRFFLVAVLFPLFDLEIALLlpLPWGDQLN 83
Cdd:PRK06602  11 FLIFLIVAIGLGILLLVAGKLLGPRAPDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFL--FPWAVSFR 88

                         90       100       110
                 ....*....|....*....|....*....|...
gi 8395619    84 NPMETLFWAMTVLIL-LTLGLAYEWAQGGLEWA 115
Cdd:PRK06602  89 EIGWLGFVEAMIFILvLLVGLVYLWRKGALDWE 121
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 7-114 1.65e-27

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 97.47  E-value: 1.65e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8395619     7 ILIIMTTLSLVLALVSFWLPQMNSDTEKLSPYECGFDPLGSARLPFSLRFFLVAVLFPLFDLEIALLlpLPWGDQLNNPM 86
Cdd:MTH00055  11 LLLFSIGLSTVISGASYIVGVKQPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFL--FPWCVVYNQIG 88

                         90       100
                 ....*....|....*....|....*....
gi 8395619    87 ETLFWAMTV-LILLTLGLAYEWAQGGLEW 114
Cdd:MTH00055  89 LFGFWVMYLfLIILTIGLIYEWVKGGLEW 117
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 1-116 1.16e-26

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 95.06  E-value: 1.16e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8395619     1 MNLFATILIIMTTLSLVLALVSFWLP-QMNSDTEKLSPYECGFDPLGSARLPFSLRFFLVAVLFPLFDLEIALLLPLPWG 79
Cdd:MTH00202   1 MLLILFMSILSILISSLLFLVSWMLSfRSLMDREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLV 80

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 8395619    80 DQLNNPMETLFWAMTVLILLTLGLAYEWAQGGLEWAE 116
Cdd:MTH00202  81 LKSSWSKGGLLGGTIFLLILIGGLIHEWKEGSLDWVK 117
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 7-114 1.15e-24

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 90.12  E-value: 1.15e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8395619     7 ILIIMTTLSLVLALVSFWLPQMNSDTEKLSPYECGFDPLGSARLPFSLRFFLVAVLFPLFDLEIALLlpLPWGDQLNNPM 86
Cdd:MTH00018   6 LLIFSVVLSALFSGASYFLGVKQPDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFL--FPWCVLYNQIA 83

                         90       100
                 ....*....|....*....|....*....
gi 8395619    87 ETLFWAMTV-LILLTLGLAYEWAQGGLEW 114
Cdd:MTH00018  84 PFGFWTMVGfLFILTLGLIYEWIKGGLEW 112
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 8-114 2.74e-24

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 89.02  E-value: 2.74e-24
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8395619    8 LIIMTTLSLVLALVSFWLPQMNSDTEKLSPYECGFDPLGSARLPFSLRFFLVAVLFPLFDLEIALLlpLPWGDQLNNPME 87
Cdd:COG0838  12 LLVALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFL--FPWAVVFRELGW 89

                        90       100
                ....*....|....*....|....*...
gi 8395619   88 TLFWAMTV-LILLTLGLAYEWAQGGLEW 114
Cdd:COG0838  90 FGLIEMLVfIAILLVGLIYAWKKGALEW 117
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 1-115 3.03e-22

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 84.14  E-value: 3.03e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8395619     1 MNLFATILIIMTTLSLVLALVSFWLPQMNS-DTEKLSPYECGFDPLGSARLPFSLRFFLVAVLFPLFDLEIALLLPLPWG 79
Cdd:MTH00012   1 MSLMMIPMMISLILPPLVLGAAWVLAARSTaDREKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTI 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 8395619    80 DQLNNPMETLFWAMTVLILLTLGLAYEWAQGGLEWA 115
Cdd:MTH00012  81 LMTSTSKTVVYTSILFLLILVIGLIHEWREGSLDWS 116
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 9-114 7.78e-21

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 80.75  E-value: 7.78e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8395619     9 IIMTTLSLVLALVSFWLPQMNSDTEKLSPYECGFDPLGSARLPFSLRFFLVAVLFPLFDLEIALLlpLPWGDQLNNPMET 88
Cdd:MTH00030  18 IILLLVSISFTLGNSRIGLTKPDSEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFL--FPWSIVFNQLNLF 95

                         90       100
                 ....*....|....*....|....*..
gi 8395619    89 LFWAM-TVLILLTLGLAYEWAQGGLEW 114
Cdd:MTH00030  96 SFWIVyTFLIVLAIGLAYEWIKGGLEW 122
ndhC CHL00022
NADH dehydrogenase subunit 3
 2-114 3.79e-12

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 58.07  E-value: 3.79e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8395619     2 NLFATILIIMTTLSLVLALVSFWLPQMNSDTEKLSPYECGFDPLGSARLPFSLRFFLVAVLFPLFDLEIALLlpLPWG-- 79
Cdd:CHL00022   8 DIFWAFLIISSLIPILAFLISGLLAPISKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAms 85

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 8395619    80 -DQLNnpMETLFWAMTVLILLTLGLAYEWAQGGLEW 114
Cdd:CHL00022  86 fDVLG--VSAFIEALIFVLILIVGLVYAWRKGALEW 119
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 1-114 4.98e-11

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 55.45  E-value: 4.98e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8395619     1 MNLFATILIiMTTLSLVLALVSFWLPQMNSDTE----KLSPYECGFDPLGSARLP--FSLRFFLVAVLFPLFDLEIALLL 74
Cdd:PRK07928   1 MNVYIPILV-LGALAAAFAVVSVVVASLVGPKRynraKLEAYECGIEPTPQPAGGgrFPVKYYLTAMLFIVFDIEIVFLY 79

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 8395619    75 PlpWGDQLNNPMETLFWAMTVLIL-LTLGLAYEWAQGGLEW 114
Cdd:PRK07928  80 P--WAVSFDALGVFGLVEMALFMLtVFVAYAYVWRRGGLEW 118
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
1-114 3.31e-08

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 48.12  E-value: 3.31e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8395619     1 MNLFATILIIMTTLslVLALVSFWLPQMNSDTEKLSPYECGFDPLGSARlPFSLRFFLVAVLFPLFDLEIALLlpLPWGD 80
Cdd:PRK08489  16 LLVLTFVAFFLTTR--LARFISRKLAQKNTEKLKLAIYECGPEPVKQPN-RISSHFYIMALLFILFDVEIVFM--FPWAV 90

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 8395619    81 QLNNPMETLFWAMTVLI-LLTLGLAYEWAQGGLEW 114
Cdd:PRK08489  91 DFKLLGLFGLIEMLLFIvLLTIGFIYAWKKGALEW 125
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 1-114 7.89e-08

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 46.81  E-value: 7.89e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8395619     1 MNLFATILIIMTTLSLVLALVSFWLPQMNSDTEKLSPYECGFDPLGSARLPFSLRFFLVAVLFPLFDLEIALLLPLpwgd 80
Cdd:MTH00092   1 MLVLIFVFLFTLLLLMLLYLLNFFLSVKKFDLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFLGL---- 76

                         90       100       110
                 ....*....|....*....|....*....|....
gi 8395619    81 qLNNPMETLFWAMTVLILLTLGLAYEWAQGGLEW 114
Cdd:MTH00092  77 -LVSDFSSLISFFMLMIFIFFGFYMEWWYGKLIW 109
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
5-114 2.92e-07

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 45.50  E-value: 2.92e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8395619     5 ATILIIMTTLSLVLALVSFWLPQMNSDTEKLSPYECGFDPLGSARLPFSLRFFLVAVLFPLFDLEIALLLPlpWGDQLNN 84
Cdd:PRK07756  13 LIFLLLGILLPVVALTLGRMLRPNKPSAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYP--WAVAYDK 90

                         90       100       110
                 ....*....|....*....|....*....|.
gi 8395619    85 PMETLFWAMTVLI-LLTLGLAYEWAQGGLEW 114
Cdd:PRK07756  91 LGLFALIEMLIFVvMLLVGLAYAWKKKVLQW 121
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
 3-114 9.10e-06

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 41.42  E-value: 9.10e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8395619     3 LFATILIIMTTLSLVLALVSFWLPQ--MNSDTEKLSPYECGFDPLGSARLPFSLRFFLVAVLFPLFDLEIALLLPLPWGD 80
Cdd:MTH00060   4 LLFVFFVFFLLFLVIYFFHSGLWNNkiYSGGFSWVSSFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLLNMPFQG 83

                         90       100       110
                 ....*....|....*....|....*....|....
gi 8395619    81 QLNNpmeTLFWAMTVLILLTLGLAYEWAQGGLEW 114
Cdd:MTH00060  84 LLFY---NFWYYYFFLLLLFLGFVVELFSGYVRW 114
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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