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Conserved domains on  [gi|836593582|gb|AKM71155|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Psephotellus varius]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-317 6.75e-143

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 407.29  E-value: 6.75e-143
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582   1 LILGTTITITSNHWTMAWAGLEINTLAIIPLISKSHHPRAIEATTKYFLTQAAASTLLLFSSMMNAWSTGQWDISQLTYP 80
Cdd:MTH00112  13 LILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDITQLTNP 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582  81 PSCLLLTTAIAIKLGLAPFHFWFPEVLQGSTLTTALLLSTLMKLPPTTILFLTSHSLNPTLLTSMSIMSIALGGWMGLNQ 160
Cdd:MTH00112  93 TSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGWGGLNQ 172

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582 161 TQTRKILAFSSISHLGWMTMIIIYNPKLTLLTFYTYTLMTTSIFLILNTTNTLKLSTLLTSWTKTPMLNTILMMTLLSLA 240
Cdd:MTH00112 173 TQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTLLSLA 252

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 836593582 241 GLPPLTGFLPKWLIIQELTKQEMTATATTIALLSLLSLFFYLRLAYCSTITLPPNPSNKMKQWSIKKPTNTLTPSIT 317
Cdd:MTH00112 253 GLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNTLTATLT 329
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-317 6.75e-143

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 407.29  E-value: 6.75e-143
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582   1 LILGTTITITSNHWTMAWAGLEINTLAIIPLISKSHHPRAIEATTKYFLTQAAASTLLLFSSMMNAWSTGQWDISQLTYP 80
Cdd:MTH00112  13 LILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDITQLTNP 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582  81 PSCLLLTTAIAIKLGLAPFHFWFPEVLQGSTLTTALLLSTLMKLPPTTILFLTSHSLNPTLLTSMSIMSIALGGWMGLNQ 160
Cdd:MTH00112  93 TSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGWGGLNQ 172

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582 161 TQTRKILAFSSISHLGWMTMIIIYNPKLTLLTFYTYTLMTTSIFLILNTTNTLKLSTLLTSWTKTPMLNTILMMTLLSLA 240
Cdd:MTH00112 173 TQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTLLSLA 252

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 836593582 241 GLPPLTGFLPKWLIIQELTKQEMTATATTIALLSLLSLFFYLRLAYCSTITLPPNPSNKMKQWSIKKPTNTLTPSIT 317
Cdd:MTH00112 253 GLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNTLTATLT 329
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 2-258 5.03e-26

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 107.51  E-value: 5.03e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582   2 ILGTTITITSNHWTMAWAGLEINTLAIIPLIS-KSHHPRAIEATTKYFLTQAAASTLLLFSSMMNAWSTGQWDISQL--- 77
Cdd:COG1007  112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLNLAGIaaa 191

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582  78 -----TYPP----SCLLLTTAIAIKLGLAPFHFWFPEVLQGStlttalllstlmklPPTTILFLTS-------------- 134
Cdd:COG1007  192 laaggANSPllllGLVLVLAGLAFKLSAVPFHMWTPDVYEGA--------------PTPVTAFLATapkiaafaallrll 257

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582 135 ----HSLNP---TLLTSMSIMSIALGGWMGLNQTQTRKILAFSSISHLGWMTMIIIYNPKLTL--LTFY--TYTLMTTSI 203
Cdd:COG1007  258 veafPGLAAdwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYllAYLFMNLGA 337

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582 204 FLIL-----NTTNTLKLSTLLTSWTKTPMLNTILMMTLLSLAGLPPLTGFLPKWLIIQEL 258
Cdd:COG1007  338 FAVIlllsrKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAA 397
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 11-256 7.22e-26

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 104.32  E-value: 7.22e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582   11 SNHWTMAWAGLEINTLAIIPLI-SKSHHPRAIEATTKYFLTQAAASTLLLFSSMMNAWSTGQWDISQL-TYPPSC----- 83
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELsKALTGGlnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582   84 -----LLLTTAIAIKLGLAPFHFWFPEVLQGSTLTTALLLSTLMK------LPPTTILFLTSHSLNPTLLTSMSIMSIAL 152
Cdd:pfam00361  81 llllfLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVkaggygLIRRSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582  153 GGWMGLNQTQTRKILAFSSISHLGWMTMII----IYNPKLTLLTFYTYTLMTTSIFL-----ILNTTNTLKLSTLLTSWT 223
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 836593582  224 KTPMLNTILMMTLLSLAGLPPLTGFLPKWLIIQ 256
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 2-263 1.97e-18

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 85.38  E-value: 1.97e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582    2 ILGTTITITSNHWTMAWAGLEINTLAIIPLIS-KSHHPRAIEATTKYFLTQAAASTLLLFSSMMNAWSTGQWDISQLTYP 80
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582   81 PSC------------LLLTTAIAIKLGLAPFHFWFPEVLQGSTLTTALLLSTLMKLPPT--------TILFLTSHSLNPT 140
Cdd:TIGR01770 192 LSNgmlnisllllgiVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFavflrlflYILFGFSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582  141 LLTsMSIMSIALGGWMGLNQTQTRKILAFSSISHLGWMTMIIIYNPKLTL--LTFY--TYTLMTTSIFLIL------NTT 210
Cdd:TIGR01770 272 LAI-IAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIkaVLFYifIYALMSLGAFGVLsllrsyKDE 350

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 836593582  211 NTLKLSTLLTSWTKTPMLNTILMMTLLSLAGLPPLTGFLPKWLIIQELTKQEM 263
Cdd:TIGR01770 351 WIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGL 403
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-317 6.75e-143

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 407.29  E-value: 6.75e-143
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582   1 LILGTTITITSNHWTMAWAGLEINTLAIIPLISKSHHPRAIEATTKYFLTQAAASTLLLFSSMMNAWSTGQWDISQLTYP 80
Cdd:MTH00112  13 LILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDITQLTNP 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582  81 PSCLLLTTAIAIKLGLAPFHFWFPEVLQGSTLTTALLLSTLMKLPPTTILFLTSHSLNPTLLTSMSIMSIALGGWMGLNQ 160
Cdd:MTH00112  93 TSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGWGGLNQ 172

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582 161 TQTRKILAFSSISHLGWMTMIIIYNPKLTLLTFYTYTLMTTSIFLILNTTNTLKLSTLLTSWTKTPMLNTILMMTLLSLA 240
Cdd:MTH00112 173 TQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTLLSLA 252

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 836593582 241 GLPPLTGFLPKWLIIQELTKQEMTATATTIALLSLLSLFFYLRLAYCSTITLPPNPSNKMKQWSIKKPTNTLTPSIT 317
Cdd:MTH00112 253 GLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNTLTATLT 329
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-317 3.16e-119

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 347.18  E-value: 3.16e-119
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582   1 LILGTTITITSNHWTMAWAGLEINTLAIIPLISKSHHPRAIEATTKYFLTQAAASTLLLFSSMMNAWSTGQWDISQLTYP 80
Cdd:MTH00135  13 LGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGQWDIQQMSHP 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582  81 PSCLLLTTAIAIKLGLAPFHFWFPEVLQGSTLTTALLLSTLMKLPPTTILFLTSHSlNPTLLTSMSIMSIALGGWMGLNQ 160
Cdd:MTH00135  93 LPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLTSTLVGGWGGLNQ 171

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582 161 TQTRKILAFSSISHLGWMTMIIIYNPKLTLLTFYTYTLMTTSIFLILNTTNTLKLSTLLTSWTKTPMLNTILMMTLLSLA 240
Cdd:MTH00135 172 TQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTPLILLSLG 251

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 836593582 241 GLPPLTGFLPKWLIIQELTKQEMTATATTIALLSLLSLFFYLRLAYCSTITLPPNPSNKMKQWSIKKPTNTLTPSIT 317
Cdd:MTH00135 252 GLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPSTQLTLPLAIS 328
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-317 8.72e-117

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 340.75  E-value: 8.72e-117
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582   1 LILGTTITITSNHWTMAWAGLEINTLAIIPLISKSHHPRAIEATTKYFLTQAAASTLLLFSSMMNAWSTGQWDISQLTYP 80
Cdd:MTH00070  13 LALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWFTGEWTIMNMQTP 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582  81 PSCLLLTTAIAIKLGLAPFHFWFPEVLQGSTLTTALLLSTLMKLPPTTILFLTSHSLNPTLLTSMSIMSIALGGWMGLNQ 160
Cdd:MTH00070  93 LPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLLSTLIGGWGGLNQ 172

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582 161 TQTRKILAFSSISHLGWMTMIIIYNPKLTLLTFYTYTLMTTSIFLILNTTNTLKLSTLLTSWTKTPMLNTILMMTLLSLA 240
Cdd:MTH00070 173 TQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMMLTLLSLG 252

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 836593582 241 GLPPLTGFLPKWLIIQELTKQEMTATATTIALLSLLSLFFYLRLAYCSTITLPPNPSNKMKQWSIKKPTNTLTPSIT 317
Cdd:MTH00070 253 GLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNKTNNLLSLTI 329
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-317 3.76e-105

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 311.40  E-value: 3.76e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582   1 LILGTTITITSNHWTMAWAGLEINTLAIIPLISKSHHPRAIEATTKYFLTQAAASTLLLFSSMMNAWSTGQWDISQLTYP 80
Cdd:MTH00105  13 LFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYSGQWTITKLTNP 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582  81 PSCLLLTTAIAIKLGLAPFHFWFPEVLQGSTLTTALLLSTLMKLPPTTILFLTSHSLNPTLLTSMSIMSIALGGWMGLNQ 160
Cdd:MTH00105  93 TASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAILSILIGGWGGLNQ 172

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582 161 TQTRKILAFSSISHLGWMTMIIIYNPKLTLLTFYTYTLMTTSIFLILNTTNTLKLSTLLTSWTKTPMLNTILMMTLLSLA 240
Cdd:MTH00105 173 TQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLILLTLLSLG 252

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 836593582 241 GLPPLTGFLPKWLIIQELTKQEMTATATTIALLSLLSLFFYLRLAYCSTITLPPNPSN-KMK-QWSIKKPTNTLTPSIT 317
Cdd:MTH00105 253 GLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNmKMKwQFENTKPMTLLPTLII 331
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-317 5.02e-90

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 272.61  E-value: 5.02e-90
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582   1 LILGTTITITSNHWTMAWAGLEINTLAIIPLISKSHHPRAIEATTKYFLTQAAASTLLLFSSMMNAWSTGQWDISQLTYP 80
Cdd:MTH00200  13 LGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQWGISEMLGP 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582  81 PSCLLLTTAIAIKLGLAPFHFWFPEVLQGSTLTTALLLSTLMKLPPTTILFLTSHSLNPTLLTSMSIMSIALGGWMGLNQ 160
Cdd:MTH00200  93 LSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLLSVLVGGWGGLNQ 172

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582 161 TQTRKILAFSSISHLGWMTMIIIYNPKLTLLTFYTYTLMTTSIFLILNTTNTLKLSTLLTSWTKTPMLNTILMMTLLSLA 240
Cdd:MTH00200 173 TQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLLGLTLLSLG 252

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 836593582 241 GLPPLTGFLPKWLIIQELTKQEMTATATTIALLSLLSLFFYLRLAYCSTITLPPNPSNKMKQWSIKKPTNTLTPSIT 317
Cdd:MTH00200 253 GLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSNSNLLVGLLL 329
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-255 4.07e-80

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 247.54  E-value: 4.07e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582   1 LILGTTITITSNHWTMAWAGLEINTLAIIPLISKSHHPRAIEATTKYFLTQAAASTLLLFSSMMNAWSTGQWDISQLTYP 80
Cdd:MTH00041  13 IILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSINGPLNT 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582  81 PSCLLLTTAIAIKLGLAPFHFWFPEVLQGSTLTTALLLSTLMKLPPTTILFLTSHSLNPTLLTSMSIMSIALGGWMGLNQ 160
Cdd:MTH00041  93 LSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGGWGGLNQ 172

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582 161 TQTRKILAFSSISHLGWMTMIIIYNPKLTLLTFYTYTLMTTSIFLILNTTNTLKLSTLLTSWTKTPMLNTILMMTLLSLA 240
Cdd:MTH00041 173 TQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFILSILSLG 252

                        250
                 ....*....|....*
gi 836593582 241 GLPPLTGFLPKWLII 255
Cdd:MTH00041 253 GLPPLTGFLNKFISL 267
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-264 1.03e-54

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 181.56  E-value: 1.03e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582   1 LILGTTITITSNHWTMAWAGLEINTLAIIPLISKSHHPRAIEATTKYFLTQAAASTLLLFSSMMNAWStgqwdiSQLTYP 80
Cdd:MTH00160  14 LIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLN------LMLFNN 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582  81 PSCLLLTTAIAIKLGLAPFHFWFPEVLQGSTLTTALLLSTLMKLPPttiLFLTSHSLNPTLLTSMSIMSIALGGWMGLNQ 160
Cdd:MTH00160  88 ISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAP---LILLSYLINNNFIIIIIILSAIIGAIGGLNQ 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582 161 TQTRKILAFSSISHLGWMTMIIIYNPKLTLLTFYTYTLMTTSIFLILNTTNTLKLSTLLTSWTKTPMLNTILMMTLLSLA 240
Cdd:MTH00160 165 TSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFLNLLSLG 244

                        250       260
                 ....*....|....*....|....
gi 836593582 241 GLPPLTGFLPKWLIIQELTKQEMT 264
Cdd:MTH00160 245 GLPPFLGFLPKWIIIQLLISNNMF 268
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 1-263 2.74e-48

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 164.67  E-value: 2.74e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582   1 LILGTTITITSNHWTMAWAGLEINTLAIIPLISKSHHPRAIEATTKYFLTQAAASTLLLFSSMMNAWSTGQWDISqltyp 80
Cdd:MTH00144  13 MVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFSM----- 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582  81 pscLLLTTAIAIKLGLAPFHFWFPEVLQGSTLTTALLLSTLMKLPPttILFLTSHSLNPTLLTS---MSIMSIALGGWMG 157
Cdd:MTH00144  88 ---SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAP--LFLLSNFLDLYWLAYLlcvISVLSALVGSIGG 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582 158 LNQTQTRKILAFSSISHLGWMTMIIIYNPKLTLLTFYTYTLMTTSIFLILNTTNTLKLSTlLTSWTKTPMLNTILMMTLL 237
Cdd:MTH00144 163 LNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKD-LGSLKPSYKTGLSIISLLL 241

                        250       260
                 ....*....|....*....|....*.
gi 836593582 238 SLAGLPPLTGFLPKWLIIQELTKQEM 263
Cdd:MTH00144 242 SLGGLPPFLGFCSKLLVLISSMESSP 267
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 1-263 3.71e-46

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 159.17  E-value: 3.71e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582   1 LILGTTITITSNHWTMAWAGLEINTLAIIPLISKSHHPRAIEATTKYFLTQAAASTLLLFSSMMnawstgQWDISQLTYP 80
Cdd:MTH00011  15 MTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTM------MWSFPSLLKN 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582  81 PSCLLLTTAIAIKLGLAPFHFWFPEVLQGSTLTTALLLSTLMKLPPTTILFLTSHSLNPTLLTSMSIMSIALGGWMGLNQ 160
Cdd:MTH00011  89 ITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGGLGGMNQ 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582 161 TQTRKILAFSSISHLGWMTMIIIYNPKLTLLTFYTYTLMTTSIFLILNTTNTLKLSTLLTSWTKTPMLNTILMMTLLSLA 240
Cdd:MTH00011 169 TQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLSLG 248

                        250       260
                 ....*....|....*....|...
gi 836593582 241 GLPPLTGFLPKWLIIQELTKQEM 263
Cdd:MTH00011 249 GLPPFTGFMPKLMAIETLTSNSM 271
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 1-258 2.98e-39

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 140.96  E-value: 2.98e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582   1 LILGTTITITSNHWTMAWAGLEINTLAIIPLISKSHHPRAIEATTKYFLTQAAASTLLLFSSMMNAWSTgqwdisqLTYP 80
Cdd:MTH00197   7 IFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNL-------YLSL 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582  81 PSCLLLTTAIAIKLGLAPFHFWFPEVLQGSTLTTALLLSTLMKLPPTTILFLTSHslNPTLLTSMSIMSIALGGWMGLNQ 160
Cdd:MTH00197  80 LSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSS--SFMGLLICSVLSSLIGGIGGMNQ 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582 161 TQTRKILAFSSISHLGWMTMIIIYNPKLTLLTFYTYTLMTTSIFLILNTTNTLKLSTLLTSWTKTPMLNTILMMTLLSLA 240
Cdd:MTH00197 158 SNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSLG 237

                        250
                 ....*....|....*...
gi 836593582 241 GLPPLTGFLPKWLIIQEL 258
Cdd:MTH00197 238 GLPPLSGFFLKWLILTSL 255
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 1-255 3.16e-26

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 106.65  E-value: 3.16e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582   1 LILGTTITITSNHWTMAWAGLEINTLAIIPLI-SKSHHPRAIEATTKYFLTQAAASTLLLFSSMMNAWSTGQWDI----- 74
Cdd:MTH00196   2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGCALLCGTTGGLHLsyinl 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582  75 --------SQLTYPPSCLLLTTAIAIKLGLAPFHFWFPEVLQGSTLTTALLLSTLMKLPPTTILFltSHSLNPTLLTSMS 146
Cdd:MTH00196  82 vlnsgqsfSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILV--SIGLNVNILLIGG 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582 147 IMSIALGGWMGLNQTQTRKILAFSSISHLGWMTMII----IYNPKLTLLTFYTYTLMTTSIFLILNTTNTLK-----LST 217
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIeigsFESIQASLVYLFIYIIMSICVFSIILALNVYKnliieFSG 239

                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 836593582 218 LLtswTKTPMLNTILMMTLLSLAGLPPLTGFLPKWLII 255
Cdd:MTH00196 240 LS---RRLPILAITLALTFLSIAGIPPLVGFLGKWLIL 274
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 2-258 5.03e-26

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 107.51  E-value: 5.03e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582   2 ILGTTITITSNHWTMAWAGLEINTLAIIPLIS-KSHHPRAIEATTKYFLTQAAASTLLLFSSMMNAWSTGQWDISQL--- 77
Cdd:COG1007  112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLNLAGIaaa 191

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582  78 -----TYPP----SCLLLTTAIAIKLGLAPFHFWFPEVLQGStlttalllstlmklPPTTILFLTS-------------- 134
Cdd:COG1007  192 laaggANSPllllGLVLVLAGLAFKLSAVPFHMWTPDVYEGA--------------PTPVTAFLATapkiaafaallrll 257

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582 135 ----HSLNP---TLLTSMSIMSIALGGWMGLNQTQTRKILAFSSISHLGWMTMIIIYNPKLTL--LTFY--TYTLMTTSI 203
Cdd:COG1007  258 veafPGLAAdwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYllAYLFMNLGA 337

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582 204 FLIL-----NTTNTLKLSTLLTSWTKTPMLNTILMMTLLSLAGLPPLTGFLPKWLIIQEL 258
Cdd:COG1007  338 FAVIlllsrKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAA 397
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 11-256 7.22e-26

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 104.32  E-value: 7.22e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582   11 SNHWTMAWAGLEINTLAIIPLI-SKSHHPRAIEATTKYFLTQAAASTLLLFSSMMNAWSTGQWDISQL-TYPPSC----- 83
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELsKALTGGlnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582   84 -----LLLTTAIAIKLGLAPFHFWFPEVLQGSTLTTALLLSTLMK------LPPTTILFLTSHSLNPTLLTSMSIMSIAL 152
Cdd:pfam00361  81 llllfLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVkaggygLIRRSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582  153 GGWMGLNQTQTRKILAFSSISHLGWMTMII----IYNPKLTLLTFYTYTLMTTSIFL-----ILNTTNTLKLSTLLTSWT 223
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 836593582  224 KTPMLNTILMMTLLSLAGLPPLTGFLPKWLIIQ 256
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
2-267 2.19e-22

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 97.20  E-value: 2.19e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582   2 ILGTTITITSNHWTMAWAGLEINTLAIIPLIS-KSHHPRAIEATTKYFLTQAAASTLLLFSSMMNAWSTGQWDISQL--- 77
Cdd:PRK05777 113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIaka 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582  78 -----TYPP----SCLLLTTAIAIKLGLAPFHFWFPEVLQGSTLTTALLLSTLMKL----PPTTILFLTSHSLNPT---L 141
Cdd:PRK05777 193 ladgsGNSLlllfGLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaVLLRLLVVAFGGLSEDwqqV 272

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582 142 LTSMSIMSIALGGWMGLNQTQTRKILAFSSISHLGWMTMIIIYNPKLTL--LTFY--TYTLMTTSIFLIL--------NT 209
Cdd:PRK05777 273 LAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYsaVLFYllAYLFMTLGAFGVIsllrrkggEA 352

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 836593582 210 TNTLKLSTLltSWTKtPMLNTILMMTLLSLAGLPPLTGFLPKWLIIQELTKQEMTATA 267
Cdd:PRK05777 353 ESISDFAGL--SKRS-PLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLA 407
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 1-255 1.90e-20

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 91.62  E-value: 1.90e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582   1 LILGTTITITSNHWTMAWAGLEINTLAIIPLIS-KSHHPRAIEATTKYFLTQAAASTLLLFSSMMNAWSTGQWDI----S 75
Cdd:MTH00199 106 VALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIqginS 185

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582  76 QLTYPPSCLLLTTAIAIKLGLAPFHFWFPEVLQGSTLTTALLLSTLMKLPPTTILFLTSHSLNPTLLTSmsIMSIALGGW 155
Cdd:MTH00199 186 ILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLICA--VLSIIYGAI 263

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582 156 MGLNQTQTRKILAFSSISHLGWMTMIIIYNP----KLTLLTFYTYTLMTTSIFLILNTTNTLK--LSTLLTSWTKTPMLN 229
Cdd:MTH00199 264 GALNQTKIKRLLAYSGIGHMGFILFGVAIGSfesiQASLIYMIIYVIMSICSFSIILSLKLTKglIVEVSGLSRKNPVIA 343

                        250       260
                 ....*....|....*....|....*.
gi 836593582 230 TILMMTLLSLAGLPPLTGFLPKWLII 255
Cdd:MTH00199 344 LTLALTFLSIAGIPPLAGFLSKWLIL 369
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 2-263 1.97e-18

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 85.38  E-value: 1.97e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582    2 ILGTTITITSNHWTMAWAGLEINTLAIIPLIS-KSHHPRAIEATTKYFLTQAAASTLLLFSSMMNAWSTGQWDISQLTYP 80
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582   81 PSC------------LLLTTAIAIKLGLAPFHFWFPEVLQGSTLTTALLLSTLMKLPPT--------TILFLTSHSLNPT 140
Cdd:TIGR01770 192 LSNgmlnisllllgiVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFavflrlflYILFGFSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582  141 LLTsMSIMSIALGGWMGLNQTQTRKILAFSSISHLGWMTMIIIYNPKLTL--LTFY--TYTLMTTSIFLIL------NTT 210
Cdd:TIGR01770 272 LAI-IAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIkaVLFYifIYALMSLGAFGVLsllrsyKDE 350

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 836593582  211 NTLKLSTLLTSWTKTPMLNTILMMTLLSLAGLPPLTGFLPKWLIIQELTKQEM 263
Cdd:TIGR01770 351 WIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGL 403
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 1-271 5.36e-18

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 84.04  E-value: 5.36e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582   1 LILGTTITITSNHWTMAWAGLEINTLAIIPLISKSHHPRAIEATTKYFLTQAAASTLLLFSSMMNAWSTGQWDISQL--- 77
Cdd:COG0651  116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLaar 195

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582  78 --TYPPS-----CLLLTTAIAIKLGLAPFHFWFPE-----------VLQGSTLTT---ALLLSTLMKLPPTTILFLTshs 136
Cdd:COG0651  196 laELDPGlllaaFALLLVGFGIKAALFPLHFWLPDaypaapspvsaLLSGLLTKVgvyAILRVLTLLFGADPALFLG--- 272

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582 137 lnpTLLTSMSIMSIALGGWMGLNQTQTRKILAFSSISHLGWMTMII-IYNPKLTLLTFY---TYTLMTTSIFL----ILN 208
Cdd:COG0651  273 ---TLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLgLGTPLGLAGALFhllNHALAKALLFLaagaIER 349

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 836593582 209 TTNTLKLSTLLTSWTKTPMLNTILMMTLLSLAGLPPLTGFLPKWLIIQELTKQEMTATATTIA 271
Cdd:COG0651  350 ATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLL 412
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 3-255 8.21e-16

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 77.98  E-value: 8.21e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582   3 LGTTITITSNHWTMAWAGLEINTLAIIPLISKSHHPRAI---------EATTKYFLTQAAASTLLLFSSMMNAWSTGQ-- 71
Cdd:MTH00198 199 LGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGNeg 278

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582  72 ------------WDISQLTYPPSCLLLTTAIAIKLGLAPFHFWFPEVLQGSTLTTALLLSTLMKLppTTILFLTSHSLNP 139
Cdd:MTH00198 279 mlgtilsatletTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--TVYILLTSLVITS 356

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582 140 TLLTSMSIMSIALGGWMGLNQTQTRKILAFSSISHLGWMTMII-------IYNPKLTLLTFYTYTLMTTSIFLILNTTNT 212
Cdd:MTH00198 357 KLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVsagtyesLQASWTYAVTYLVSALASFTVICTLEEFGT 436

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 836593582 213 L------------------KLSTLLTSWTKTPMLNTILMMTLLSLAGLPPLTGFLPKWLII 255
Cdd:MTH00198 437 RtptsrqrdgsfgnynlvrRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFIL 497
ndhB CHL00049
NADH dehydrogenase subunit 2
 39-251 1.10e-14

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 74.27  E-value: 1.10e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582  39 RAIEATTKYFLTQAAASTLLLFS-SMMNAWSTGQWDIS---------QLTYPPSCLL----LTTAIAIKLGLAPFHFWFP 104
Cdd:CHL00049 159 RSNEATMKYLLMGGASSSILVYGfSWLYGLSGGEIELQeivnglintQMYNSPGISIalifITVGIGFKLSLAPFHQWTP 238

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582 105 EVLQGSTLTTALLLSTLMK---LPPTTILFLTSHSLNPT----LLTSMSIMSIALGGWMGLNQTQTRKILAFSSISHLGW 177
Cdd:CHL00049 239 DVYEGSPTPVVAFLSVTSKvaaSALATRIFDIPFYFSSNewhlLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGY 318

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582 178 MTM-IIIYNPKLTLLTFYTYTLMttSIFLILNTTNTLKLSTLLT----------SWTKTPMLNTILMMTLLSLAGLPPLT 246
Cdd:CHL00049 319 VIIgIIVGDSNDGYASMITYMLF--YIFMNLGTFACIVLFGLRTgtdnirdyagLYTKDPFLALSLALCLLSLGGIPPLA 396


                 ....*
gi 836593582 247 GFLPK 251
Cdd:CHL00049 397 GFFGK 401
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
38-251 4.02e-11

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 63.53  E-value: 4.02e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582  38 PRAIEATTKYFLTQAAASTLLLF-SSMMNAWSTGQWDIS----QLTYPPSCLLLTT------AIAIKLGLAPFHFWFPEV 106
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGSTQLSaialALITSPSLGLALAlvfviaGIAFKISAVPFHQWTPDV 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582 107 LQGSTLTTALLLSTLMKLP--PTTILFLTSHSLNPT-----LLTSMSIMSIALGGWMGLNQTQTRKILAFSSISHLGWMT 179
Cdd:PRK02504 237 YEGSPTPVVAFLSVGSKAAgfALAIRLLVTAFPSFDeqwklLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVM 316

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582 180 MIIIYNPK--LTLLTFY--TYTLMT----TSIFLILNTTNTLKLSTLLTSWTKTPMLNTILMMTLLSLAGLPPLTGFLPK 251
Cdd:PRK02504 317 IGLVAGTEagYASMVFYllAYLFMNlgafACVILFSLRTGTDQISDYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGFFGK 396
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 26-255 6.43e-10

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 60.09  E-value: 6.43e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582  26 LAIIP---LISKSHHPRAIEATTKYFLTQAAASTLLLFSSMMNAWSTGQW-----DISQLTYPPS-----CLLLTTAIAI 92
Cdd:COG1008  142 LMLIPmyfLIGIWGGERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfdiaELAAAPLPLTaqlllFLAFFIAFAV 221

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582  93 KLGLAPFHFWFPEVLQGSTlttalllstlmklPPTTILF---------------------LTSHSLNPTLLTsMSIMSIA 151
Cdd:COG1008  222 KVPMFPFHTWLPDAHVEAP-------------TAGSVLLagvllkmggygllrfalplfpEASAYFAPLLAA-LGVIGII 287

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582 152 LGGWMGLNQTQTRKILAFSSISHLGWMTM-IIIYNPK-LTLLTFY--TYTLMTTSIFLIL----NTTNTLKLSTLLTSWT 223
Cdd:COG1008  288 YGALVALAQTDLKRLIAYSSVSHMGFVLLgIFALNPLgLQGAVLQmvSHGLITAALFLLVgvlyDRTHTRDIADLGGLAK 367

                        250       260       270
                 ....*....|....*....|....*....|..
gi 836593582 224 KTPMLNTILMMTLLSLAGLPPLTGFLPKWLII 255
Cdd:COG1008  368 RMPVLAALFLLAALASLGLPGTSGFVGEFLVL 399
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 21-270 3.82e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 57.58  E-value: 3.82e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582  21 LEINTLAIIPLISKSHHPRAIEATTKYFLTQAAASTLLLFSSMMNAWSTGQWDISQLT--YPPSCLLLT------TAIAI 92
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLAgaLAENPTVVTafgfvlLALAL 214

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582  93 KLGLAPFHFWFPE-----------VLQGSTLTTALLLSTLMKLPPTTILFLTSHSLNPTLLTSMSiMSIALGGWMGLNQT 161
Cdd:PRK08375 215 KAAVFPLHTWLPRaypaappvvtaLLSGLVTKVAVYALIRIYFTVFGGDFRFALGLGWLLAVLAL-LSMLVGSLAALGQD 293

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582 162 QTRKILAFSSISHLGWMTMIIIYNPKLTLL--TFYT--YTLMTTSIFL----ILNTTNTLKLSTLLTSWTKTPMLNTILM 233
Cdd:PRK08375 294 DVKRVLAYSTVSQMGYILLGLALLTPLALAagLLHLlhHALMKGALFLaagaIEVTYGTRRLSELSGLGRRMPLTAAAFA 373

                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 836593582 234 MTLLSLAGLPPLTGFLPKWLIIQELTKQEMTATATTI 270
Cdd:PRK08375 374 VASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVL 410
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 38-256 5.07e-09

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 57.26  E-value: 5.07e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582   38 PRAIEATTKYFLTQAAASTLLLFSSMMNAWSTGQW----DISQLTYPPSC-----LLLTTAIAIKLGLAPFHFWFPEV-L 107
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGTfdllELLNLPLPFGVqtwlfLAFFIAFAVKVPLFPLHTWLPDAhV 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582  108 QGSTLTTALLLSTLMKLPPTTI------LFLTSHSLNPTLLTSMSIMSIALGGWMGLNQTQTRKILAFSSISHLGWMTMI 181
Cdd:TIGR01972 232 EAPTAGSVILAGVLLKMGTYGFlrfnlpLFPDASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLG 311

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582  182 IIYNPKL----TLLTFYTYTLMTTSIFLILNT----TNTLKLSTLLTSWTKTPMLNTILMMTLLSLAGLPPLTGFLPKWL 253
Cdd:TIGR01972 312 IFSFNELgisgAVFQMISHGLITAALFLLVGVlyerAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFL 391


                  ...
gi 836593582  254 IIQ 256
Cdd:TIGR01972 392 ILL 394
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 68-251 5.62e-09

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 57.24  E-value: 5.62e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582  68 STGQWDISQL-TYPPSCLLLTTAIAI-------KLGLAPFHFWFPEVLQGSTLTTALLLSTLM---------KLPPTtil 130
Cdd:PRK12644 183 AAGTYRLSELlADPPTGPAVSVAVVLilvgalsKSAIVPFHFWLPGAMAAPTPVSAYLHAAAMvkagiylvaRLAPG--- 259

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582 131 FLTSHSLNPTLLTsMSIMSIALGGWMGLNQTQTRKILAFSSISHLGWMTMIIIYNPKLTLLTFYTYTL----------MT 200
Cdd:PRK12644 260 FADVPVWRPTVLV-LGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRDAALAGLAMLLahalfkaalfLV 338

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 836593582 201 TSIflILNTTNTLKLSTLLTSWTKTPMLNTILMMTLLSLAGLPPLTGFLPK 251
Cdd:PRK12644 339 VGI--IDHSTGTRDIRKLSGLGRRQPVLAVVAALAAASMAGLPPLLGFVAK 387
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 22-267 5.95e-09

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 56.93  E-value: 5.95e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582  22 EINTLA---IIPLISKshhpRAIEATTKYFLTQAAASTLLLFSSMMNAWSTGQWDISQ----LTYPPS-------CLLLT 87
Cdd:PRK08668 128 EIMTFSsfmMVPMGKK----ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFADisqgLINDTStgfalivFLFLL 203

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582  88 TAIAIKLGLAPFHFWFPE-----------VLQGSTLTT-ALLLSTLMKLPPTTILFLT-----SHSLNPTLLTSMSIMSI 150
Cdd:PRK08668 204 AFGVAKAGIFPLHVWAPDayseapqsfsaVLSGQLSKLgAYGFLLVLYVLPGTKLFSEfgtyrGVPLFNYILAWLGNISI 283

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582 151 ALGGWMGLNQTQTRKILAFSSISHLGWmtmIIIYNPKLTLLTF-------YTYTLMTTSIFLILNT----TNTLKLSTLL 219
Cdd:PRK08668 284 IVGTLMAILQEDIKKLIAYSSVANGGY---ILVGLGLGTSLGFagglfhvFNHALFKGLFFLIFAAviyrTGTTKISEMG 360

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*...
gi 836593582 220 TSWTKTPMLNTILMMTLLSLAGLPPLTGFLPKWLIIQELTKQEMTATA 267
Cdd:PRK08668 361 GLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITA 408
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 21-254 1.05e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 53.18  E-value: 1.05e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582  21 LEINTLAIIPLIS-KSHHPRAIEATTKYFLTQAAASTLLLFSSMMnawSTGQWDI-------SQLTYPPSCL------LL 86
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGIAL---LYGQYGTlnmaylaVKMSENPTVVakialaLF 226

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582  87 TTAIAIKLGLAPFHFW----FPEVLQGSTLTTALLLSTLMKLPPTTILFLTSHSLNPT----LLTSMSIMSIALGGWMGL 158
Cdd:PRK08376 227 IAGLAMKSGAVPVHMWlpdaYPAAPSSISAMLLVIKQAGLYALARVLFSIYGPAINLAtvgwVIIILGCLTMFVGVAMAV 306

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582 159 NQTQTRKILAFSSISHLGWMTM---IIIYNPKLTLLTFYTYTLMTTSIFLILN--------------------TTNTLKL 215
Cdd:PRK08376 307 VQKDVKRLLAYHSVSQIGYMLLglgVGLAALGDPAMASYGEIALAGGIYHIVNhalykallfltagaviyetgTRNLNEL 386

                        250       260       270
                 ....*....|....*....|....*....|....*....
gi 836593582 216 STLLTSWTKTPMLntiLMMTLLSLAGLPPLTGFLPKWLI 254
Cdd:PRK08376 387 GGLARTMPKTTIA---FLIGAAAIVGLPPFNGFASKWLI 422
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 36-258 1.93e-07

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 52.46  E-value: 1.93e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582  36 HHPRAIEATTKYFLTQAAASTLLLFSSMMNAWSTGQWDISQL-----------TYPPSCLLLTTAIAIKLGLAPFHFWFP 104
Cdd:COG1009  156 EKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELlaaaptilsspLLTLILLLLLLGAFGKSAQFPLHFWLP 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582 105 EVLQGstlttalllstlmklpPTTIlfltS---HS-------------LNPTLLTS---MSIMSIA------LGGWMGLN 159
Cdd:COG1009  236 DAMEG----------------PTPV----SallHAatmvkagvyllarLSPLFALSpvwLTVVAIIgaitalFAALIALA 295

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582 160 QTQTRKILAFSSISHLGWMTMiiiynpkltLLTFYTYT-----LMTTSIF---LIL---------NTTNTLKLSTLltsW 222
Cdd:COG1009  296 QTDIKRVLAYSTVSQLGYMFL---------ALGVGAYVaalfhLLTHAFFkalLFLgagsvihatGTRDIRKMGGL---R 363

                        250       260       270
                 ....*....|....*....|....*....|....*.
gi 836593582 223 TKTPMLNTILMMTLLSLAGLPPLTGFLPKWLIIQEL 258
Cdd:COG1009  364 KKMPITAITFLIGALSLAGIPPFAGFFSKEAILEAA 399
PRK06459 PRK06459
hydrogenase 4 subunit B; Validated
 2-258 1.01e-06

hydrogenase 4 subunit B; Validated


Pssm-ID: 235806 [Multi-domain]  Cd Length: 585  Bit Score: 50.17  E-value: 1.01e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582   2 ILGTTITITSNHWTMAWAGLEINTLA---IIPLISKSHHPRAIeattkyFLTQAAASTLLLFSSMMNAWS-TGQWDISQL 77
Cdd:PRK06459  82 ILGMAIVLTSDNYLLFLAGWEIMTIPsyvAIALTKKNKRPAFV------FMAFGELSTVLILAGFAWAFIiSGTTNFSYL 155

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582  78 TYPPSCLLLTTAIAIKLGLAPFHF--WFPEVLQGSTLTTALLLSTLMKLPP----TTILFLTSHSlnPTLLTSMSIM--- 148
Cdd:PRK06459 156 PSPVPLILASFGFIIKMGMMPFLVseWLPIAHGNAPSNFSAILSATMTLMGvygiLKMTILTQTI--PIGYFGLTILaig 233

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582 149 --SIALGGWMGLNQTQTRKILAFSSISHLGWM-----TMIIIYNPKLTLLTFYTYTLMT---------TSIFLILNTTNT 212
Cdd:PRK06459 234 afSILFGALYAYVSENVKGLLAFSTIENNGAIlvalgLYMVTKQLITSIEHFSLITVILysfahsvakTGLFLSSGLQEK 313

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 836593582 213 LKLSTLLTSWTKTPMLNTILMMtlLSLAGLPPLTGFLPKWLIIQEL 258
Cdd:PRK06459 314 QSITYSKKIRNRWIELGLTLLA--SSLSGLLPNIGGVASWLLLESL 357
PRK12650 PRK12650
DUF4040 family protein;
17-251 1.31e-06

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 50.04  E-value: 1.31e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582  17 AWaglEINTLAIIPLISKSHhPRAIEATTKYFLTQAAASTLLLFSSMMNAWSTGQWDISQLTYPPSCL---LLTTAIAIK 93
Cdd:PRK12650 138 AW---ELVSLASFFLIARSG-SGGEAGSIRTLILTFFGGLTLLAAVAIAATQTGTTSLSGILHSDVWAekpGLTTVVAVL 213

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582  94 LGLA--------PFHFWFPEVLQGSTLTTALLLSTLMKLPPTTIL--FLTSHSLNPT---LLTSMSIMSIALGGWMGLNQ 160
Cdd:PRK12650 214 IAVAaftksaqfPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLlrFSPVFHDVAVwnwLLIIVGMITALMGAVFAVQK 293

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582 161 TQTRKILAFSSISHLGWM-TMIIIYNP-KLTLLTFYT--YTLMTTSIFLIL----NTTNTLKLSTLLTSWTKTPMLNTIL 232
Cdd:PRK12650 294 TDLKKLTAYSTVSQLGWIvATIGVGTPfALTAAVVHTlaHALFKSSLFMLIgvvdHQAGTRDIRRLGSLWRRMPFTFVSV 373

                        250
                 ....*....|....*....
gi 836593582 233 MMTLLSLAGLPPLTGFLPK 251
Cdd:PRK12650 374 TIAALSMAAVPPLFGFVSK 392
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 8-256 5.35e-06

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 47.62  E-value: 5.35e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582   8 TITSNHWTMAWAGLEINTLAIIPLISKSHHPRAIEATTKYFL------TQAAASTLLLFSSMMNAWSTGQWDI--SQLTY 79
Cdd:PRK06458 124 ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIicsvgvAFALFGTILVYANAATVMGDGEMAIlwTELLK 203

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582  80 PPSCL---LLTTAIAI-------KLGLAPFHFWFPE-----------VLQGSTLTTALLLSTLMKLppttILFLTSHSLN 138
Cdd:PRK06458 204 HASLLdptLMKLAFVFlligfgtKVGLFPMHAWLPDahseapspvsaLLSGVLLNVALYAVLRYYI----LIDAAIGSDF 279

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582 139 P-TLLTSMSIMSIALGGWMGLNQTQTRKILAFSSISHLGWMTMIIIYNPKL----TLLTFYTYTLMTTSIFL----ILNT 209
Cdd:PRK06458 280 PgRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALGIGGPLgifaALLHMLNHSLTKSAIFFasgnVLQK 359

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*..
gi 836593582 210 TNTLKLSTLLTSWTKTPMLNTILMMTLLSLAGLPPLTGFLPKWLIIQ 256
Cdd:PRK06458 360 YGTRDINVIRGLLKVSPLTGWGLMLGALAIAGMPPFGVFISEFLILT 406
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 130-255 7.27e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 47.42  E-value: 7.27e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582 130 LFLTSHSLNpTLLTSMSIMSIALGGWMGLNQTQTRKILAFSSISHLGWMTMIIIYNPKLTLLTFYTY----TLMTTSIFL 205
Cdd:PRK12662 271 FVFTTLPFN-NVFMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYivnhSIVKSALFM 349

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 836593582 206 ILNTT----NTLKLSTLLTSWTKTPMLNTILMMTLLSLAGLPPLTGFLPKWLII 255
Cdd:PRK12662 350 VSGSIsyhfGTTKLEDCLNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYIL 403
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 79-271 1.45e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 46.84  E-value: 1.45e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582  79 YPPSCLLLTTAIAIKLGLAPFHFWFPEVlqgstlttalllstlMKLPPTTILFLtsHS-------------LNP------ 139
Cdd:PRK12647 194 YLAILLLVLGGAFTKSAQFPFHFWLPNA---------------MEAPTPVSAYL--HSatmvkagiyllarLNPvlggtp 256

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582 140 ---TLLTSMSIMSIALGGWMGLNQTQTRKILAFSSISHLGWMTMIIIYNPKLTLLTFYTY----TLMTTSIFLILNT--- 209
Cdd:PRK12647 257 lwqTILPLFGGLTMLTGALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSELAIKAAVLFlvahSLYKGALFMVAGIidh 336

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 836593582 210 -TNTLKLSTLLTSWTKTPMLNTILMMTLLSLAGLPPLTGFLPKWLIIQELTKQEMTATATTIA 271
Cdd:PRK12647 337 eTGTRDITKLGGLRRAMPITAAAALLAALSMAGLPPLFGFLAKELIYEALLEAPLWSLILTVA 399
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 89-255 1.84e-05

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 46.07  E-value: 1.84e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582  89 AIAIKLGLAPFHFWFPE-----------VLQGSTLTTALLLSTLMKLPpttILFLTSHSLNPTLLtSMSIMSIALGGWMG 157
Cdd:MTH00226 239 AMAVKIPIFPFHIWLPKahveapvagsvLLAGILLKLGGYGLVRLSWP---ILPLGAQNLAPAVI-AMGIVGIVYGSFAT 314

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582 158 LNQTQTRKILAFSSISHLGWMTMIIIYNPKLTLLTFYTYTL---MTTSIFLILNTTNTLKLSTLLTSWTK-----TPMLN 229
Cdd:MTH00226 315 CRQIDVKRLVAYSSVAHMGLVSITLVTHDIIGLTGSIFIMLahgIVSSLLFILVTILYDRHHTRLIKYYRglsitMPIWG 394

                        170       180
                 ....*....|....*....|....*.
gi 836593582 230 TILMMTLLSLAGLPPLTGFLPKWLII 255
Cdd:MTH00226 395 TIMIVTSLANVAVPPSGNFIGEYLSI 420
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 36-251 2.71e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 45.98  E-value: 2.71e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582  36 HHPRAIEATTKYFLTQAAASTLLLFSSMMNAWSTGQWDISQLTYPPSC--------LLLTTAIAIKLGLA------PFHF 101
Cdd:PRK12649 156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSELienikghpLFLITLILIFIGAAaksaqgPFYI 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582 102 WFPEVLQGSTLTTALLLSTLMKLPPTTILFLTSHSLNPT-----LLTSMSIMSIALGGWMGLNQTQTRKILAFSSISHLG 176
Cdd:PRK12649 236 WLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQLA 315

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582 177 WMTMIIIYN----PKLTLLTfYTYTLMTTSIF---------LILNTTNTLKLSTLLTSWTKTPMLNTILMMTLLSLAGLP 243
Cdd:PRK12649 316 YLMTMYGYTtyhePGLGVAA-ATFHLLNHATFkaclflvagIVAHEAATRDIRKLGGLRKEMPITFIVASIAALAMAGIP 394


                 ....*...
gi 836593582 244 PLTGFLPK 251
Cdd:PRK12649 395 PLNGFLSK 402
PRK12646 PRK12646
DUF4040 family protein;
79-260 3.16e-05

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 45.52  E-value: 3.16e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582  79 YPPSCLLLTTAIAIKLGLAPFHFWFPEVLQGSTLTTALLLSTLMKLPPTTILF-----LTSHSLNPTLLTSMSIMSIALG 153
Cdd:PRK12646 209 FIPMIFMFLLGAFTKSAQFPFHIWLPRAMAAPTPVSAYLHSATMVKAGIFLLFrftplLGLSNMYIYIVTFVGLITMLFG 288

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582 154 GWMGLNQTQTRKILAFSSISHLGW-MTMI-----IIYNPKLTLLTFYT-------YTLMTTSIF---------LILNTTN 211
Cdd:PRK12646 289 SITALKQWDLKGILAYSTISQLGMiMAMVgigggYAQHQQDAIASIYVfvlfaalFHLMNHAIFkcalfmgvgIIDHEAG 368

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 836593582 212 TLKLSTLLTSWTKTPMLNTILMMTLLSLAGLPPLTGFLPKWLIIQELTK 260
Cdd:PRK12646 369 TRDIRILSGMRQLFPKMNLVMTIAALSMAGVPFLNGFLSKEMFLDALTQ 417
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 26-255 3.56e-05

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 45.19  E-value: 3.56e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582  26 LAIIP---LISKSHHPRAIEATTKYFLTQAAASTLLLFSSM----MNAWSTGQWDISQLTYPPSCLLLTT--------AI 90
Cdd:PRK05846 142 AMLIPmyfLIGVWGGKNRIYAATKFFLYTLLGSLLMLVAIIylvvVYYNATGTFDIADLLNLPLPPGVQYwlflaffiAF 221

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582  91 AIKLGLAPFHFWFPE-----------VLQGSTLTTALLLSTLMKLPpttiLF-LTSHSLNPTLLTsMSIMSIALGGWMGL 158
Cdd:PRK05846 222 AVKMPMFPLHTWLPDahvqaptagsvLLAGILLKMGAYGLLRFSLP----LFpDASHEFAPIIIT-LGVIAIIYGALVAL 296

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582 159 NQTQTRKILAFSSISHLGWMTM-IIIYNPK-LTLLTFYT--YTLMTTSIFLILNT----TNTLKLSTLLTSWTKTPMLNT 230
Cdd:PRK05846 297 AQTDIKKLIAYSSISHMGFVTLgIFAGNQLgIQGAIFQMisHGLSSAALFLLVGVlydrLHTRDIADYGGLAKVMPVLAA 376

                        250       260
                 ....*....|....*....|....*
gi 836593582 231 ILMMTLLSLAGLPPLTGFLPKWLII 255
Cdd:PRK05846 377 FFLFFAMASLGLPGTSGFVGEFLIL 401
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 21-259 4.42e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 44.94  E-value: 4.42e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582  21 LEINTLAIIPLISKSHHPRAIEATTKYFLTQAAASTLLLFSSMMNAWSTGQWDISQL-TYPPSCL-LLTTAIAIKLGLAP 98
Cdd:PRK07234 123 LEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLaTADPEAFaLIALGLLVKGGIFV 202

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582  99 FHFWFPEVlqgstlttalllstlMKLPPTTILFLTS-----------------HSLNPTLLTSMSIMSIALGGWMGLNQT 161
Cdd:PRK07234 203 SGLWLPLT---------------HSEAEPPVSALLSgvvvkagvfplvrcaldVPGLDLIVRIFGVGTALLGVLFALLEK 267

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582 162 QTRKILAFSSISHLGWmtmiIIYNPKLTLLTFYTYTLMTTSIFLI---LNTTNTLKL-STLLTSWTKTPmlntiLMMTLL 237
Cdd:PRK07234 268 DLKRMLAFSTISQLGF----ILAAPLVGGLYALAHGLVKSTLFLCagaLPSRNFTELiSQMLGIGKWIP-----LTMASF 338

                        250       260
                 ....*....|....*....|..
gi 836593582 238 SLAGLPPLTGFLPKWLIIQELT 259
Cdd:PRK07234 339 SIAGFPLLAGFVSKVLTLKNLL 360
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
127-256 5.33e-05

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 44.56  E-value: 5.33e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582 127 TTILFLTSHSLNPTLLTSMSIMSIALGGWMGLNQTQTRKILAFSSISHLGWMTM-IIIYNPK-LTLLTFYTYTLMT--TS 202
Cdd:PRK12663 260 FTLLFPQERELLHPLLATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLgLALGTPAgINGAIFYLVHDMVvkTA 339

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 836593582 203 IFLILNTTNTLKLSTLLTS----WTKTPMLNTILMMTLLSLAGLPPLTGFLPKWLIIQ 256
Cdd:PRK12663 340 LFLIAGSLVRLTGYRSLQYlgglYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQ 397
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 84-256 9.79e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 43.80  E-value: 9.79e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582  84 LLLTTAIAIKLGLAPFHFWFPE-----------VLQGSTLTTALLLSTLMKlpptTILFlTSHSLNpTLLTSMSIMSIAL 152
Cdd:PRK12665 213 AVLLVAFGIKAAVFPLSFWLPDsyptapapvtaVFAGLLTKVGVYAIIRTH----TLLF-PGGGLD-TLLMVVALLTMVV 286

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582 153 GGWMGLNQTQTRKILAFSSISHLGWMTM-IIIYNPK-LTLLTFYT--YTLMTTSIFLILN-------TTNTLKLSTLLTS 221
Cdd:PRK12665 287 GILGAIAQSDIKRLLSFTLVSHIGYMVFgIALSTVAgLSGAIYYVahHITVQTTLFLVVGlierqagSSSLRRLGGLAKA 366

                        170       180       190
                 ....*....|....*....|....*....|....*
gi 836593582 222 wtkTPMLNTILMMTLLSLAGLPPLTGFLPKWLIIQ 256
Cdd:PRK12665 367 ---SPLLAVLFFVPALNLGGIPPFSGFIGKVALLE 398
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 58-256 1.21e-04

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 43.53  E-value: 1.21e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582  58 LLFSSMMNAWSTGqwDISQLTYPpsCLLLTTAIAIKLGLAPFHFWFPEVLQGSTLTTALLLSTLMKlppTTILFLTSHS- 136
Cdd:MTH00020 192 LDFSSVFNMVVSA--PSSDITLI--CLFLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMV---TAGVFLLIRSs 264

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582 137 ----LNPTLLTSMSI---MSIALGGWMGLNQTQTRKILAFSSISHLGWMTMII-IYNPKLTLLTFYTYTLMTTSIFL--- 205
Cdd:MTH00020 265 plfeQAPLALIIVTIvgsLTVFFAATVGLVQNDLKKVIAYSTCSQLGYMVVACgLSHYSISLFHLMNHAFFKALLFLsag 344

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 836593582 206 -----ILNTTNTLKLSTLLTSwtkTPMLNTILMMTLLSLAGLPPLTGFLPKWLIIQ 256
Cdd:MTH00020 345 svihaLSDEQDMRKMGGLISF---LPLTYIFFLIGSLSLMGFPYLTGFYSKDLILE 397
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 128-256 2.27e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 42.63  E-value: 2.27e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582 128 TILFLTSHSLNPTLLTSMSIMSIALGGWMGLNQTQTRKILAFSSISHLGWMTM-IIIYNPKLTLLTFYtYT----LMTTS 202
Cdd:PRK07691 264 TLFFSHDTSFTHYLILILALLTIIFGVIGAVAYFDIKKIIIYNIMIAVGVILVgVAMMTESGMIGAIY-YLihdmIVKAA 342

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 836593582 203 IFL-------ILNTTNTLKLSTLLTSWtktPMLNTILMMTLLSLAGLPPLTGFLPKWLIIQ 256
Cdd:PRK07691 343 LFLligimikITGTTDLKKMGGLIKRY---PVLGWMFFIAALSLAGIPPLSGFYGKFFIVE 400
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
22-256 6.60e-04

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 41.17  E-value: 6.60e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582  22 EINTLAIIPLISKSHHPRAIEATTKYFLTQAAASTLLLFSSMMNAWSTGQWDISQLTY-----PPSCLLLTTAIAIKLGL 96
Cdd:PRK06277 130 EIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDIHNallvnPTSPVIYGGLLLLIFGL 209

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582  97 A------PFHFWFPEV-----------LQGSTLTTALLLSTLM-KLPPTTILFLTSHslnpTLLTSMSIMSIALGGWMGL 158
Cdd:PRK06277 210 LygsglpPFHTIKSDIyakakpfgsalLQTFSKFVLVALMLVIfKLFGGLSYFPSAQ----GVLIALSVLAMVFGVVMAL 285

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582 159 NQTQTRKILAFSSISHLGWMTMIIIYNPKLT----LLTFYTYTLMTTSIFL----ILNTTNTLKLSTLLTSWTKTPMLNT 230
Cdd:PRK06277 286 LQTDYKRLLAYHAISQGGYVAAGLALGTPLGivagIFHAINHVIYKSALFLgagiVSYRTKTSNLRKLGGLLPVMPVVAF 365

                        250       260
                 ....*....|....*....|....*.
gi 836593582 231 ILMMTLLSLAGLPPLTGFLPKWLIIQ 256
Cdd:PRK06277 366 MVLCAKLAISGVPPFNGFQSKLMLAQ 391
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
26-254 6.76e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 41.22  E-value: 6.76e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582  26 LAIIPL---ISKSHHPRAIEATTKYFLTQAAASTLLLFSSMMNAWSTG--QWDISQL---TYPPSC-LLLTTAI----AI 92
Cdd:PRK06473 138 LELIPLyllIAIWGGQRRGYAATKFLLYTAISGILILVSFLGLVWLSGasSFDYEPLrshTLPLSTqLLLLAPIlvgfGI 217

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582  93 KLGLAPFHFWFPEV-LQGSTLTTALLLSTLMKLPPTTIL------FLTSHSLNPTLLTSMSIMSIALGGWMGLNQTQTRK 165
Cdd:PRK06473 218 KIPLVPFHTWLPDAhVEASTPVSVLLAGVLLKLGTYGLLrfgvglFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKK 297

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582 166 ILAFSSISHLGWMTMIIIYNPKLTLLT----FYTYTLMTTSIFLIL-------NTTNTLKLSTLLTSWTKTPMLNTILMM 234
Cdd:PRK06473 298 MVAYSSIGHMGYILLAAAAATPLSILAavfqMISHGLISALLFLLVgvvykktGSRDVDVLRGLLNPERGLPITGSLMIL 377

                        250       260
                 ....*....|....*....|
gi 836593582 235 TLLSLAGLPPLTGFLPKWLI 254
Cdd:PRK06473 378 GVMASAGIPGMVGFIAEFLV 397
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 1-182 7.34e-04

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 41.28  E-value: 7.34e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582   1 LILGTTITITSNHWTMAWAGLEINTLAIIPLISKSHHPRAIEATTKYFLTQAAA------STLLLFSSMMNAWSTGQWDI 74
Cdd:PRK08676 111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582  75 SQLT-----YPPSCLLLT-----TAIAIKLGLAPFHFWFPEV-LQGSTLTTALLLSTLMKLPPTTILFLTS-------HS 136
Cdd:PRK08676 191 TELAahaslLSPSVLGASflfifIGFLAKSGLVPFHTWLPAAyAKAPSVVSALLSGTVLNIGIYGILRLSAllrqsgaAE 270

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 836593582 137 LNPTLLTSMSIMSIALGGWMGLNQTQTRKILAFSSISHLGWMTMII 182
Cdd:PRK08676 271 QFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGI 316
PRK12648 PRK12648
putative monovalent cation/H+ antiporter subunit A; Reviewed
 152-251 9.53e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237157 [Multi-domain]  Cd Length: 948  Bit Score: 40.94  E-value: 9.53e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582 152 LGGWMGLNQTQTRKILAFSSISHLGWMTMiiiynpkltLLTFYTYTLMTTSIFLILN--------------------TTN 211
Cdd:PRK12648 284 LGAYFALFQHDLKGLLAYSTISHLGLITL---------LLGLGSPLAAVAAIFHIINhatfkaslfmaagiidhetgTRD 354

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 836593582 212 TLKLSTLltsWTKTPMLNTILMMTLLSLAGLPPLTGFLPK 251
Cdd:PRK12648 355 MRRLSGL---RRLMPITATLAMVAAAAMAGVPLLNGFLSK 391
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 93-259 2.04e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 39.94  E-value: 2.04e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582  93 KLGLapfHFWFPEVLQGSTLTTALLLSTLMKlppTTILFLTSHS--------LNPTLLTSMSIMSIALGGWMGLNQTQTR 164
Cdd:MTH00032 241 QLGL---HTWLPDAMEGPTPVSALIHAATMV---TAGVFLMIRSfplfekapLTLLIITIFGALTAFFAATVGLVQNDLK 314

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582 165 KILAFSSISHLGWMTMIIIY--NPKLTLLTFYTYTLMTTSIFL----ILNTTNT-----LKLSTLLTSwtkTPMLNTILM 233
Cdd:MTH00032 315 KVIAYSTCSQLGYMVLIIGIegSHNVGLFHLVNHAFFKALLFLsagsVIHSTTVdeqdmRKMGGLIHS---IPFTYTMML 391

                        170       180
                 ....*....|....*....|....*.
gi 836593582 234 MTLLSLAGLPPLTGFLPKWLIIqELT 259
Cdd:MTH00032 392 IGSFSIMGLPYLTGFYSKDLIL-ELT 416
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 131-256 2.07e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 39.75  E-value: 2.07e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582 131 FLTSHSLNPTLLTSMSIMSIALGGWMGLNQTQTRKILAFSSISHLGWMTMII-IYNPKLTLLTFYTYTLMTTSIF----- 204
Cdd:MTH00207 235 FLSSTYWFNPALLLTASLTMLMAGLSAMTECDMKKIIALSTLSQLGVMMASLgLGMPKLALFHLITHALFKALLFvcags 314

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 836593582 205 LILNTTNTLKLSTLLTSWTKTPMLNTILMMTLLSLAGLPPLTGFLPKWLIIQ 256
Cdd:MTH00207 315 LIHSHHHSQDLRTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILE 366
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
6-108 2.57e-03

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 39.30  E-value: 2.57e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582   6 TITITSNHWTM---AWA--GLEINTLaiipLISKSHHPRAIEATTKYFLTQAAASTLLLFSSMMNAWSTGQWDISQL--- 77
Cdd:PRK08168 114 HLLVLSDHLLVliaAWAaiSLALHRL----LCFYPDRPFARLAAHKKFIADRLAELLLLAAAALAYLEVGSLSLSALwah 189

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 836593582  78 --TYPPS------CLLLTTAIAIKLGLAPFHFWFPEVLQ 108
Cdd:PRK08168 190 laAQGASpslqaaALLLVLAVILKTAQLPVHGWLIQVME 228
ND2 MTH00091
NADH dehydrogenase subunit 2; Provisional
 92-260 4.95e-03

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177154  Cd Length: 273  Bit Score: 37.93  E-value: 4.95e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582  92 IKLGLAPFHFWFPEVLQGSTLTTALLLSTLMKLPPTTILFLTSHSLNPTLLTSMSIMSIalggWMGLNQTQTRKILAFSS 171
Cdd:MTH00091  69 MKIGVAPFHFWIFSVTNGLFGWNLMWFLTFQKLPFLLVLLQFFSKNFFFLLLFGLLICF----FQMFLLKSYKNLLILSS 144

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582 172 ISHLGWMTMIIIYNpklTLLTFYTYTLMTTSIFLILNttntlklstlltSWTKTPMLNTILMMTLLSLAGLPPLTGFLPK 251
Cdd:MTH00091 145 TESFNWLILSFFFS---FFNVFFLFFYYFLLMLFLIP------------KFNNVNKLNFVSWETLLVFMNLPFSVTFFVK 209


                 ....*....
gi 836593582 252 WLIIQELTK 260
Cdd:MTH00091 210 IFSLSEILK 218
PRK12645 PRK12645
monovalent cation/H+ antiporter subunit A; Reviewed
 159-251 6.19e-03

monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237155 [Multi-domain]  Cd Length: 800  Bit Score: 38.37  E-value: 6.19e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582 159 NQTQTRKILAFSSISHLGW-MTMIII----YNPKLTLLTFYTyTLMTTSIFLILN--------------------TTNTL 213
Cdd:PRK12645 294 KQTDLKGILAFSTVSQLGLiMSLLGIgaasLHYQGDDSKIYA-AAITAAIFHLINhatfkgslfmivgivdhetgTRDIR 372

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 836593582 214 KLSTLLTSwtkTPMLNTILMMTLLSLAGLPPLTGFLPK 251
Cdd:PRK12645 373 KLGGLMTI---MPITFTIALIGALSMAGLPPFNGFLSK 407
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 84-260 7.46e-03

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 37.88  E-value: 7.46e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582  84 LLLTTAIAIKLGLAPFHFWFPEV-LQGSTLTTALLLSTLMKLPPTTILFLTSHSLNPTL-----LTSMSIMSIALGGWMG 157
Cdd:PRK08042 184 LLGVIGFGLLAGIIPLHGWVPQAhANASAPAAALFSTVVMKIGLLGILTLSLLGGNAPLwwgvaLLVLGMITAFVGGLYA 263

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 836593582 158 LNQTQTRKILAFSSISHLG--------WMTMIIIYNPKLTLLTF-------YTYTLMTTSIFL----ILNTTNTLKLSTL 218
Cdd:PRK08042 264 LMEHNIQRLLAYHTLENIGiillglgaGVTGIALEQPALIALGLvgglyhlLNHSLFKSVLFLgagsVWFRTGHRDIEKL 343

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 836593582 219 LTSWTKTPMLNTILMMTLLSLAGLPPLTGFLPKWLIIQELTK 260
Cdd:PRK08042 344 GGIGKKMPVISIAMLVGLMAMAALPPLNGFAGEWVIYQSFFK 385
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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