|
Name |
Accession |
Description |
Interval |
E-value |
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
1-251 |
0e+00 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 498.07 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAKKISIL 80
Cdd:COG4604 1 MIEIKNVSKRYGGKVVLDDVSLTIPKGGITALIGPNGAGKSTLLSMISRLLPPDSGEVLVDGLDVATTPSRELAKRLAIL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 81 KQSNHIAARLTVHELVSFGRFPYSRGRLTRQDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYIFLD 160
Cdd:COG4604 81 RQENHINSRLTVRELVAFGRFPYSKGRLTAEDREIIDEAIAYLDLEDLADRYLDELSGGQRQRAFIAMVLAQDTDYVLLD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 161 EPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGDVSSIMRDEVLRGIYDLDVRVQ 240
Cdd:COG4604 161 EPLNNLDMKHSVQMMKLLRRLADELGKTVVIVLHDINFASCYADHIVAMKDGRVVAQGTPEEIITPEVLSDIYDTDIEVE 240
|
250
....*....|.
gi 831463781 241 TIENRRICVYF 251
Cdd:COG4604 241 EIDGKRICVYF 251
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
1-249 |
4.42e-111 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 319.68 E-value: 4.42e-111
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAKKISIL 80
Cdd:COG1120 1 MLEAENLSVGYGGRPVLDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPSSGEVLLDGRDLASLSRRELARRIAYV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 81 KQSNHIAARLTVHELVSFGRFPYSR--GRLTRQDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYIF 158
Cdd:COG1120 81 PQEPPAPFGLTVRELVALGRYPHLGlfGRPSAEDREAVEEALERTGLEHLADRPVDELSGGERQRVLIARALAQEPPLLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 159 LDEPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGDVSSIMRDEVLRGIYDLDVR 238
Cdd:COG1120 161 LDEPTSHLDLAHQLEVLELLRRLARERGRTVVMVLHDLNLAARYADRLVLLKDGRIVAQGPPEEVLTPELLEEVYGVEAR 240
|
250
....*....|...
gi 831463781 239 VQTIE--NRRICV 249
Cdd:COG1120 241 VIEDPvtGRPLVL 253
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
1-249 |
4.87e-83 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 248.78 E-value: 4.87e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAKKISIL 80
Cdd:PRK11231 2 TLRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 81 KQSNHIAARLTVHELVSFGRFPYSR--GRLTRQDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYIF 158
Cdd:PRK11231 82 PQHHLTPEGITVRELVAYGRSPWLSlwGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVL 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 159 LDEPLNNLDMKHAVQMMKVLRKLVDElGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGDVSSIMRDEVLRGIYDLDVR 238
Cdd:PRK11231 162 LDEPTTYLDINHQVELMRLMRELNTQ-GKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMTPGLLRTVFDVEAE 240
|
250
....*....|...
gi 831463781 239 V--QTIENRRICV 249
Cdd:PRK11231 241 IhpEPVSGTPMCV 253
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
3-218 |
4.99e-80 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 238.10 E-value: 4.99e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 3 EVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAKKISILKQ 82
Cdd:cd03214 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 83 snhiaarltvhelvsfgrfpysrgrltrqdrdyvreAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYIFLDEP 162
Cdd:cd03214 81 ------------------------------------ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEP 124
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 831463781 163 LNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFASCYSDYMVALKDGAVVCEG 218
Cdd:cd03214 125 TSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
1-241 |
5.35e-76 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 230.77 E-value: 5.35e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAKKISIL 80
Cdd:COG4559 1 MLEAENLSVRLGGRTLLDDVSLTLRPGELTAIIGPNGAGKSTLLKLLTGELTPSSGEVRLNGRPLAAWSPWELARRRAVL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 81 KQSNHIAARLTVHELVSFGRFPYSRGRltRQDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQ---DTD-- 155
Cdd:COG4559 81 PQHSSLAFPFTVEEVVALGRAPHGSSA--AQDRQIVREALALVGLAHLAGRSYQTLSGGEQQRVQLARVLAQlwePVDgg 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 156 --YIFLDEPLNNLDMKHAVQMMKVLRKLVDElGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGDVSSIMRDEVLRGIY 233
Cdd:COG4559 159 prWLFLDEPTSALDLAHQHAVLRLARQLARR-GGGVVAVLHDLNLAAQYADRILLLHQGRLVAQGTPEEVLTDELLERVY 237
|
....*...
gi 831463781 234 DLDVRVQT 241
Cdd:COG4559 238 GADLRVLA 245
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
1-241 |
5.79e-72 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 220.41 E-value: 5.79e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAKKISIL 80
Cdd:PRK13548 2 MLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 81 KQSNHIAARLTVHELVSFGRFPYSRGRltRQDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQ------DT 154
Cdd:PRK13548 82 PQHSSLSFPFTVEEVVAMGRAPHGLSR--AEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQlwepdgPP 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 155 DYIFLDEPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGDVSSIMRDEVLRGIYD 234
Cdd:PRK13548 160 RWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLTPETLRRVYG 239
|
....*..
gi 831463781 235 LDVRVQT 241
Cdd:PRK13548 240 ADVLVQP 246
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
1-239 |
1.19e-69 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 214.18 E-value: 1.19e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRteelaKKISIL 80
Cdd:COG1121 6 AIELENLTVSYGGRPVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPPTSGTVRLFGKPPRRAR-----RRIGYV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 81 KQSNHIAAR--LTVHELVSFGRFPYSR--GRLTRQDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDY 156
Cdd:COG1121 81 PQRAEVDWDfpITVRDVVLMGRYGRRGlfRRPSRADREAVDEALERVGLEDLADRPIGELSGGQQQRVLLARALAQDPDL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 157 IFLDEPLNNLDMKHAVQMMKVLRKLVDElGKTIVMVMHDINFASCYSDYMVALKDGaVVCEGDVSSIMRDEVLRGIYDLD 236
Cdd:COG1121 161 LLLDEPFAGVDAATEEALYELLRELRRE-GKTILVVTHDLGAVREYFDRVLLLNRG-LVAHGPPEEVLTPENLSRAYGGP 238
|
...
gi 831463781 237 VRV 239
Cdd:COG1121 239 VAL 241
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
4-233 |
2.25e-67 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 209.26 E-value: 2.25e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 4 VKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAKKISILKQS 83
Cdd:PRK10575 14 LRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQ 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 84 NHIAARLTVHELVSFGRFPY--SRGRLTRQDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYIFLDE 161
Cdd:PRK10575 94 LPAAEGMTVRELVAIGRYPWhgALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDE 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 831463781 162 PLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGDVSSIMRDEVLRGIY 233
Cdd:PRK10575 174 PTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMRGETLEQIY 245
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
11-235 |
1.56e-64 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 202.14 E-value: 1.56e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 11 YGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAKKISILKQSNHIAARL 90
Cdd:PRK10253 17 YGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDI 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 91 TVHELVSFGRFPYSR--GRLTRQDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYIFLDEPLNNLDM 168
Cdd:PRK10253 97 TVQELVARGRYPHQPlfTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDI 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 831463781 169 KHAVQMMKVLRKLVDELGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGDVSSIMRDEVLRGIYDL 235
Cdd:PRK10253 177 SHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVTAELIERIYGL 243
|
|
| PhnC |
COG3638 |
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and ... |
1-236 |
1.11e-59 |
|
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 442855 [Multi-domain] Cd Length: 249 Bit Score: 188.73 E-value: 1.11e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRY-GGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAK---K 76
Cdd:COG3638 2 MLELRNLSKRYpGGTPALDDVSLEIERGEFVALIGPSGAGKSTLLRCLNGLVEPTSGEILVDGQDVTALRGRALRRlrrR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 77 ISILKQSNHIAARLTVHELVSFGRFPYS------RGRLTRQDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVL 150
Cdd:COG3638 82 IGMIFQQFNLVPRLSVLTNVLAGRLGRTstwrslLGLFPPEDRERALEALERVGLADKAYQRADQLSGGQQQRVAIARAL 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 151 AQDTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGDVSSImRDEVLR 230
Cdd:COG3638 162 VQEPKLILADEPVASLDPKTARQVMDLLRRIAREDGITVVVNLHQVDLARRYADRIIGLRDGRVVFDGPPAEL-TDAVLR 240
|
....*.
gi 831463781 231 GIYDLD 236
Cdd:COG3638 241 EIYGGE 246
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
2-229 |
6.48e-57 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 180.99 E-value: 6.48e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRY-GGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAKKISIL 80
Cdd:COG1122 1 IELENLSFSYpGGTPALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEVLVDGKDITKKNLRELRRKVGLV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 81 KQS--NHIAARlTVHELVSFGrfPYSRGrLTRQD-RDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYI 157
Cdd:COG1122 81 FQNpdDQLFAP-TVEEDVAFG--PENLG-LPREEiRERVEEALELVGLEHLADRPPHELSGGQKQRVAIAGVLAMEPEVL 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 831463781 158 FLDEPLNNLDMKHAVQMMKVLRKLVDElGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGDVSSIMRDEVL 229
Cdd:COG1122 157 VLDEPTAGLDPRGRRELLELLKRLNKE-GKTVIIVTHDLDLVAELADRVIVLDDGRIVADGTPREVFSDYEL 227
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
3-218 |
1.08e-56 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 180.04 E-value: 1.08e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 3 EVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRteelaKKISILKQ 82
Cdd:cd03235 1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKER-----KRIGYVPQ 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 83 SNHI--AARLTVHELVSFGRFPYSR--GRLTRQDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYIF 158
Cdd:cd03235 76 RRSIdrDFPISVRDVVLMGLYGHKGlfRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLL 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 159 LDEPLNNLDMKHAVQMMKVLRKLVDElGKTIVMVMHDINFASCYSDYmVALKDGAVVCEG 218
Cdd:cd03235 156 LDEPFAGVDPKTQEDIYELLRELRRE-GMTILVVTHDLGLVLEYFDR-VLLLNRTVVASG 213
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
2-225 |
9.90e-55 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 175.64 E-value: 9.90e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRtEELAKKISILK 81
Cdd:COG1131 1 IEVRGLTKRYGDKTALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVRVLGEDVARDP-AEVRRRIGYVP 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 82 QSNHIAARLTVHELVSF-GRFpysRGRLTRQDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYIFLD 160
Cdd:COG1131 80 QEPALYPDLTVRENLRFfARL---YGLPRKEARERIDELLELFGLTDAADRKVGTLSGGMKQRLGLALALLHDPELLILD 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 831463781 161 EPLNNLDMKHAVQMMKVLRKLVDElGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGDVSSIMR 225
Cdd:COG1131 157 EPTSGLDPEARRELWELLRELAAE-GKTVLLSTHYLEEAERLCDRVAIIDKGRIVADGTPDELKA 220
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
3-212 |
6.35e-54 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 173.04 E-value: 6.35e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 3 EVKQVLKRYGGKT--VIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAKKISIL 80
Cdd:cd03225 1 ELKNLSFSYPDGArpALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 81 KQ-SNHIAARLTVHELVSFGrfPYSRGRLTRQDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYIFL 159
Cdd:cd03225 81 FQnPDDQFFGPTVEEEVAFG--LENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLL 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 831463781 160 DEPLNNLDMKHAVQMMKVLRKLVDElGKTIVMVMHDINFASCYSDYMVALKDG 212
Cdd:cd03225 159 DEPTAGLDPAGRRELLELLKKLKAE-GKTIIIVTHDLDLLLELADRVIVLEDG 210
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
2-214 |
6.49e-54 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 173.06 E-value: 6.49e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRYGG----KTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELA--- 74
Cdd:cd03255 1 IELKNLSKTYGGggekVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAafr 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 75 -KKISILKQSNHIAARLTVHELVSFGRFPysRGRLTRQDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQD 153
Cdd:cd03255 81 rRHIGFVFQSFNLLPDLTALENVELPLLL--AGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALAND 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 831463781 154 TDYIFLDEPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFAScYSDYMVALKDGAV 214
Cdd:cd03255 159 PKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELRDGKI 218
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
3-233 |
9.94e-54 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 173.52 E-value: 9.94e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 3 EVKQVLKRYG-GKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELA---KKIS 78
Cdd:cd03256 2 EVENLSKTYPnGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRqlrRQIG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 79 ILKQSNHIAARLTVHELVSFGRFPYS------RGRLTRQDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQ 152
Cdd:cd03256 82 MIFQQFNLIERLSVLENVLSGRLGRRstwrslFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQ 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 153 DTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGDVSSImRDEVLRGI 232
Cdd:cd03256 162 QPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAEL-TDEVLDEI 240
|
.
gi 831463781 233 Y 233
Cdd:cd03256 241 Y 241
|
|
| ABC_phnC |
TIGR02315 |
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of ... |
1-234 |
1.55e-53 |
|
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. [Transport and binding proteins, Anions]
Pssm-ID: 131368 [Multi-domain] Cd Length: 243 Bit Score: 172.87 E-value: 1.55e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRYG-GKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAK---K 76
Cdd:TIGR02315 1 MLEVENLSKVYPnGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKlrrR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 77 ISILKQSNHIAARLTVHELVSFGRFPYSR------GRLTRQDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVL 150
Cdd:TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPtwrsllGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARAL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 151 AQDTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGdVSSIMRDEVLR 230
Cdd:TIGR02315 161 AQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDG-APSELDDEVLR 239
|
....
gi 831463781 231 GIYD 234
Cdd:TIGR02315 240 HIYG 243
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
1-241 |
6.39e-53 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 176.19 E-value: 6.39e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAKKISIL 80
Cdd:PRK09536 3 MIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 81 KQSNHIAARLTVHELVSFGRFPYsRGRL---TRQDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYI 157
Cdd:PRK09536 83 PQDTSLSFEFDVRQVVEMGRTPH-RSRFdtwTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVL 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 158 FLDEPLNNLDMKHAVQMMKVLRKLVDElGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGDVSSIMRDEVLRGIYDLDV 237
Cdd:PRK09536 162 LLDEPTASLDINHQVRTLELVRRLVDD-GKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTADTLRAAFDART 240
|
....
gi 831463781 238 RVQT 241
Cdd:PRK09536 241 AVGT 244
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
2-215 |
4.70e-52 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 168.08 E-value: 4.70e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEElaKKISILK 81
Cdd:cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPER--RNIGMVF 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 82 QSNHIAARLTVHELVSFGrfPYSRGRLTRQDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYIFLDE 161
Cdd:cd03259 79 QDYALFPHLTVAENIAFG--LKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDE 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 831463781 162 PLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFASCYSDYMVALKDGAVV 215
Cdd:cd03259 157 PLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIV 210
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
3-227 |
1.35e-50 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 165.30 E-value: 1.35e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 3 EVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAKK-ISILK 81
Cdd:cd03219 2 EVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLgIGRTF 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 82 QSNHIAARLTVHELVSFGRFPYSRGRLT--------RQDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQD 153
Cdd:cd03219 82 QIPRLFPELTVLENVMVAAQARTGSGLLlararreeREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATD 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 831463781 154 TDYIFLDEPLNNLDMKHAVQMMKVLRKLVDElGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGDVSSIMRDE 227
Cdd:cd03219 162 PKLLLLDEPAAGLNPEETEELAELIRELRER-GITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNNP 234
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
1-247 |
1.59e-50 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 165.42 E-value: 1.59e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRtEELAKKISIL 80
Cdd:COG4555 1 MIEVENLSKKYGKVPALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSILIDGEDVRKEP-REARRQIGVL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 81 KQSNHIAARLTVHE-LVSFGRFpysRGRLTRQDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYIFL 159
Cdd:COG4555 80 PDERGLYDRLTVREnIRYFAEL---YGLFDEELKKRIEELIELLGLEEFLDRRVGELSTGMKKKVALARALVHDPKVLLL 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 160 DEPLNNLDMKHAVQMMKVLRKLVDElGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGDVSSIMRDEVLRGIYdlDVRV 239
Cdd:COG4555 157 DEPTNGLDVMARRLLREILRALKKE-GKTVLFSSHIMQEVEALCDRVVILHKGKVVAQGSLDELREEIGEENLE--DAFV 233
|
....*...
gi 831463781 240 QTIENRRI 247
Cdd:COG4555 234 ALIGSEEG 241
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
1-233 |
1.33e-49 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 163.29 E-value: 1.33e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAKK-ISI 79
Cdd:COG0411 4 LLEVRGLTKRFGGLVAVDDVSLEVERGEIVGLIGPNGAGKTTLFNLITGFYRPTSGRILFDGRDITGLPPHRIARLgIAR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 80 LKQSNHIAARLTVHE--------------LVSFGRFPYSRGRLtRQDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAY 145
Cdd:COG0411 84 TFQNPRLFPELTVLEnvlvaaharlgrglLAALLRLPRARREE-REARERAEELLERVGLADRADEPAGNLSYGQQRRLE 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 146 IAMVLAQDTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGDVSSIMR 225
Cdd:COG0411 163 IARALATEPKLLLLDEPAAGLNPEETEELAELIRRLRDERGITILLIEHDMDLVMGLADRIVVLDFGRVIAEGTPAEVRA 242
|
....*...
gi 831463781 226 DEVLRGIY 233
Cdd:COG0411 243 DPRVIEAY 250
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
1-215 |
1.85e-49 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 162.13 E-value: 1.85e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRYGGK----TVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAK- 75
Cdd:COG1136 4 LLELRNLTKSYGTGegevTALRGVSLSIEAGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVLIDGQDISSLSERELARl 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 76 ---KISILKQSNHIAARLTVHELVSFGRFPysRGRLTRQDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQ 152
Cdd:COG1136 84 rrrHIGFVFQFFNLLPELTALENVALPLLL--AGVSRKERRERARELLERVGLGDRLDHRPSQLSGGQQQRVAIARALVN 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 831463781 153 DTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFAScYSDYMVALKDGAVV 215
Cdd:COG1136 162 RPKLILADEPTGNLDSKTGEEVLELLRELNRELGTTIVMVTHDPELAA-RADRVIRLRDGRIV 223
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
1-226 |
3.86e-49 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 168.54 E-value: 3.86e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRY-----GGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTE---E 72
Cdd:COG1123 260 LLEVRNLSKRYpvrgkGGVRAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLRPTSGSILFDGKDLTKLSRRslrE 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 73 LAKKISILKQsNHIAA---RLTVHELVSFGrfPYSRGRLTRQDR-DYVREAIRYMELEP-LQDRYMDELSGGQRQRAYIA 147
Cdd:COG1123 340 LRRRVQMVFQ-DPYSSlnpRMTVGDIIAEP--LRLHGLLSRAERrERVAELLERVGLPPdLADRYPHELSGGQRQRVAIA 416
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 831463781 148 MVLAQDTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGDVSSIMRD 226
Cdd:COG1123 417 RALALEPKLLILDEPTSALDVSVQAQILNLLRDLQRELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEDGPTEEVFAN 495
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
2-225 |
8.01e-49 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 160.75 E-value: 8.01e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEEL---AKKIS 78
Cdd:cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELyrlRRRMG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 79 ILKQSNHIAARLTVHELVSFgrFPYSRGRLTRQD-RDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYI 157
Cdd:cd03261 81 MLFQSGALFDSLTVFENVAF--PLREHTRLSEEEiREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELL 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 831463781 158 FLDEPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGDVSSIMR 225
Cdd:cd03261 159 LYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
1-227 |
2.75e-47 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 156.45 E-value: 2.75e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRYGGKTVidRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEElaKKISIL 80
Cdd:COG3840 1 MLRLDDLTYRYGDFPL--RFDLTIAAGERVAILGPSGAGKSTLLNLIAGFLPPDSGRILWNGQDLTALPPAE--RPVSML 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 81 KQSNHIAARLTVHELVSFGRFPysRGRLTRQDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYIFLD 160
Cdd:COG3840 77 FQENNLFPHLTVAQNIGLGLRP--GLKLTAEQRAQVEQALERVGLAGLLDRLPGQLSGGQRQRVALARCLVRKRPILLLD 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 831463781 161 EPLNNLD--MKHavQMMKVLRKLVDELGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGDVSSIMRDE 227
Cdd:COG3840 155 EPFSALDpaLRQ--EMLDLVDELCRERGLTVLMVTHDPEDAARIADRVLLVADGRIAADGPTAALLDGE 221
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
2-212 |
3.12e-47 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 154.48 E-value: 3.12e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRtEELAKKISILK 81
Cdd:cd03230 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIGYLP 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 82 QSNHIAARLTVHELVsfgrfpysrgrltrqdrdyvreairymeleplqdrymdELSGGQRQRAYIAMVLAQDTDYIFLDE 161
Cdd:cd03230 80 EEPSLYENLTVRENL--------------------------------------KLSGGMKQRLALAQALLHDPELLILDE 121
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 831463781 162 PLNNLDMKHAVQMMKVLRKLVDElGKTIVMVMHDINFASCYSDYMVALKDG 212
Cdd:cd03230 122 PTSGLDPESRREFWELLRELKKE-GKTILLSSHILEEAERLCDRVAILNNG 171
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
2-225 |
6.51e-47 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 155.92 E-value: 6.51e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRY-GGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAKKISIL 80
Cdd:cd03295 1 IEFENVTKRYgGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 81 KQSNHIAARLTVHELVsfGRFPYSRGRLTRQDRDYVREAIRYMELEPLQ--DRYMDELSGGQRQRAYIAMVLAQDTDYIF 158
Cdd:cd03295 81 IQQIGLFPHMTVEENI--ALVPKLLKWPKEKIRERADELLALVGLDPAEfaDRYPHELSGGQQQRVGVARALAADPPLLL 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 831463781 159 LDEPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGDVSSIMR 225
Cdd:cd03295 159 MDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILR 225
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
2-212 |
4.62e-46 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 151.57 E-value: 4.62e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYR--TEELAKKISI 79
Cdd:cd03229 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEdeLPPLRRRIGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 80 LKQSNHIAARLTVHELVSFGrfpysrgrltrqdrdyvreairymeleplqdrymdeLSGGQRQRAYIAMVLAQDTDYIFL 159
Cdd:cd03229 81 VFQDFALFPHLTVLENIALG------------------------------------LSGGQQQRVALARALAMDPDVLLL 124
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 831463781 160 DEPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFASCYSDYMVALKDG 212
Cdd:cd03229 125 DEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDG 177
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
1-230 |
5.68e-46 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 153.60 E-value: 5.68e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELA---KKI 77
Cdd:COG1127 5 MIEVRNLTKSFGDRVVLDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEILVDGQDITGLSEKELYelrRRI 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 78 SILKQSnhiAA---RLTVHELVSFG-RFpysRGRLTRQD-RDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQ 152
Cdd:COG1127 85 GMLFQG---GAlfdSLTVFENVAFPlRE---HTDLSEAEiRELVLEKLELVGLPGAADKMPSELSGGMRKRVALARALAL 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 153 DTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGDVSSIMR--DEVLR 230
Cdd:COG1127 159 DPEILLYDEPTAGLDPITSAVIDELIRELRDELGLTSVVVTHDLDSAFAIADRVAVLADGKIIAEGTPEELLAsdDPWVR 238
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
1-226 |
6.10e-46 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 153.81 E-value: 6.10e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRYG----GKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAKK 76
Cdd:COG1124 1 MLEVRNLSVSYGqggrRVPVLKDVSLEVAPGESFGLVGESGSGKSTLLRALAGLERPWSGEVTFDGRPVTRRRRKAFRRR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 77 ISILKQ----SNHiaARLTVHELVSFgrfPY-SRGRLTRQDRdyVREAIRYMELEP-LQDRYMDELSGGQRQRAYIAMVL 150
Cdd:COG1124 81 VQMVFQdpyaSLH--PRHTVDRILAE---PLrIHGLPDREER--IAELLEQVGLPPsFLDRYPHQLSGGQRQRVAIARAL 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 831463781 151 AQDTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGDVSSIMRD 226
Cdd:COG1124 154 ILEPELLLLDEPTSALDVSVQAEILNLLKDLREERGLTYLFVSHDLAVVAHLCDRVAVMQNGRIVEELTVADLLAG 229
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
2-209 |
1.27e-45 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 151.86 E-value: 1.27e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRYGGK----TVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARyrteeLAKKI 77
Cdd:cd03293 1 LEVRNVSKTYGGGggavTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 78 SILKQSNHIAARLTVHELVSFGrfPYSRGRLTRQDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYI 157
Cdd:cd03293 76 GYVFQQDALLPWLTVLDNVALG--LELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVL 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 831463781 158 FLDEPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFASCYSDYMVAL 209
Cdd:cd03293 154 LLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVL 205
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
1-243 |
4.04e-44 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 149.08 E-value: 4.04e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPK-DGGEIWIEGKEIARYRTEELAKKISI 79
Cdd:COG1119 3 LLELRNVTVRRGGKTILDDISWTVKPGEHWAILGPNGAGKSTLLSLITGDLPPtYGNDVRLFGERRGGEDVWELRKRIGL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 80 LkqSNHIAARLTVHELV----------SFGRFPysrgRLTRQDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMV 149
Cdd:COG1119 83 V--SPALQLRFPRDETVldvvlsgffdSIGLYR----EPTDEQRERARELLELLGLAHLADRPFGTLSQGEQRRVLIARA 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 150 LAQDTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMH---DInfASCYSDYMVaLKDGAVVCEGDVSSIMRD 226
Cdd:COG1119 157 LVKDPELLILDEPTAGLDLGARELLLALLDKLAAEGAPTLVLVTHhveEI--PPGITHVLL-LKDGRVVAAGPKEEVLTS 233
|
250
....*....|....*..
gi 831463781 227 EVLRGIYDLDVRVQTIE 243
Cdd:COG1119 234 ENLSEAFGLPVEVERRD 250
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
10-200 |
8.62e-44 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 146.22 E-value: 8.62e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 10 RYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGkeiaryrteelAKKISILKQSNHIAAR 89
Cdd:NF040873 1 GYGGRPVLHGVDLTIPAGSLTAVVGPNGSGKSTLLKVLAGVLRPTSGTVRRAG-----------GARVAYVPQRSEVPDS 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 90 L--TVHELVSFGRFPySRG---RLTRQDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYIFLDEPLN 164
Cdd:NF040873 70 LplTVRDLVAMGRWA-RRGlwrRLTRDDRAAVDDALERVGLADLAGRQLGELSGGQRQRALLAQGLAQEADLLLLDEPTT 148
|
170 180 190
....*....|....*....|....*....|....*.
gi 831463781 165 NLDMKHAVQMMKVLRKLVDElGKTIVMVMHDINFAS 200
Cdd:NF040873 149 GLDAESRERIIALLAEEHAR-GATVVVVTHDLELVR 183
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
1-215 |
1.99e-43 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 150.25 E-value: 1.99e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEElaKKISIL 80
Cdd:COG3842 5 ALELENVSKRYGDVTALDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGFETPDSGRILLDGRDVTGLPPEK--RNVGMV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 81 KQS----NHiaarLTVHELVSFG----RFPysrgRLTRQDRdyVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQ 152
Cdd:COG3842 83 FQDyalfPH----LTVAENVAFGlrmrGVP----KAEIRAR--VAELLELVGLEGLADRYPHQLSGGQQQRVALARALAP 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 831463781 153 DTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFASCYSDYMVALKDGAVV 215
Cdd:COG3842 153 EPRVLLLDEPLSALDAKLREEMREELRRLQRELGITFIYVTHDQEEALALADRIAVMNDGRIE 215
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
1-226 |
2.31e-43 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 153.14 E-value: 2.31e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRY--GGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDG---GEIWIEGKEIARYRTEELAK 75
Cdd:COG1123 4 LLEVRDLSVRYpgGDVPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGLLPHGGrisGEVLLDGRDLLELSEALRGR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 76 KISILKQSNHIA-ARLTVHELVSFGrfpYSRGRLTRQD-RDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQD 153
Cdd:COG1123 84 RIGMVFQDPMTQlNPVTVGDQIAEA---LENLGLSRAEaRARVLELLEAVGLERRLDRYPHQLSGGQRQRVAIAMALALD 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 831463781 154 TDYIFLDEPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGDVSSIMRD 226
Cdd:COG1123 161 PDLLIADEPTTALDVTTQAEILDLLRELQRERGTTVLLITHDLGVVAEIADRVVVMDDGRIVEDGPPEEILAA 233
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
1-195 |
1.89e-42 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 143.39 E-value: 1.89e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRtEELAKKISIL 80
Cdd:COG4133 2 MLEAENLSCRRGERLLFSGLSFTLAAGEALALTGPNGSGKTTLLRILAGLLPPSAGEVLWNGEPIRDAR-EDYRRRLAYL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 81 KQSNHIAARLTVHELVSFgrfpYSRGRLTRQDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYIFLD 160
Cdd:COG4133 81 GHADGLKPELTVRENLRF----WAALYGLRADREAIDEALEAVGLAGLADLPVRQLSAGQKRRVALARLLLSPAPLWLLD 156
|
170 180 190
....*....|....*....|....*....|....*...
gi 831463781 161 EPLNNLDmkhaVQMMKVLRKLVDEL---GKTIVMVMHD 195
Cdd:COG4133 157 EPFTALD----AAGVALLAELIAAHlarGGAVLLTTHQ 190
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
1-218 |
7.40e-42 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 142.64 E-value: 7.40e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRYGGK----TVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELA-- 74
Cdd:cd03257 1 LLEVKNLSVSFPTGggsvKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKir 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 75 -KKISILKQsNHIAA---RLTVHELVsfgRFPY-SRGRLTRQDRDYVREAIRYMELEP---LQDRYMDELSGGQRQRAYI 146
Cdd:cd03257 81 rKEIQMVFQ-DPMSSlnpRMTIGEQI---AEPLrIHGKLSKKEARKEAVLLLLVGVGLpeeVLNRYPHELSGGQRQRVAI 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 831463781 147 AMVLAQDTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFASCYSDYMVALKDGAVVCEG 218
Cdd:cd03257 157 ARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
1-196 |
9.17e-42 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 143.31 E-value: 9.17e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRY----GGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEelakk 76
Cdd:COG1116 7 ALELRGVSKRFptggGGVTALDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLEKPTSGEVLVDGKPVTGPGPD----- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 77 ISILKQSnhiaARL----TVHELVSFG-RFpysRGRLTRQDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLA 151
Cdd:COG1116 82 RGVVFQE----PALlpwlTVLDNVALGlEL---RGVPKAERRERARELLELVGLAGFEDAYPHQLSGGMRQRVAIARALA 154
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 831463781 152 QDTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDI 196
Cdd:COG1116 155 NDPEVLLMDEPFGALDALTRERLQDELLRLWQETGKTVLFVTHDV 199
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
3-212 |
1.09e-41 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 139.69 E-value: 1.09e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 3 EVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAKKISILKQ 82
Cdd:cd00267 1 EIENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 83 snhiaarltvhelvsfgrfpysrgrltrqdrdyvreairymeleplqdrymdeLSGGQRQRAYIAMVLAQDTDYIFLDEP 162
Cdd:cd00267 81 -----------------------------------------------------LSGGQRQRVALARALLLNPDLLLLDEP 107
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 831463781 163 LNNLDMKHAVQMMKVLRKLVDElGKTIVMVMHDINFASCYSDYMVALKDG 212
Cdd:cd00267 108 TSGLDPASRERLLELLRELAEE-GRTVIIVTHDPELAELAADRVIVLKDG 156
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
2-215 |
1.12e-40 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 138.93 E-value: 1.12e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEElaKKISILK 81
Cdd:cd03301 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKD--RDIAMVF 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 82 QSNHIAARLTVHELVSFGRfpysrgRLTRQDRD----YVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYI 157
Cdd:cd03301 79 QNYALYPHMTVYDNIAFGL------KLRKVPKDeideRVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVF 152
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 831463781 158 FLDEPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFASCYSDYMVALKDGAVV 215
Cdd:cd03301 153 LMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQ 210
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
2-215 |
4.18e-40 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 138.14 E-value: 4.18e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEElaKKISILK 81
Cdd:cd03300 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHK--RPVNTVF 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 82 QSNHIAARLTVHELVSFGrfpYSRGRLTRQD-RDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYIFLD 160
Cdd:cd03300 79 QNYALFPHLTVFENIAFG---LRLKKLPKAEiKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLD 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 831463781 161 EPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFASCYSDYMVALKDGAVV 215
Cdd:cd03300 156 EPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQ 210
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
1-215 |
1.31e-39 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 140.21 E-value: 1.31e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIaryrTEELAKK--IS 78
Cdd:COG3839 3 SLELENVSKSYGGVEALKDIDLDIEDGEFLVLLGPSGCGKSTLLRMIAGLEDPTSGEILIGGRDV----TDLPPKDrnIA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 79 ILKQS----NHiaarLTVHELVSFG---RfpysrgRLTRQDRD-YVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVL 150
Cdd:COG3839 79 MVFQSyalyPH----MTVYENIAFPlklR------KVPKAEIDrRVREAAELLGLEDLLDRKPKQLSGGQRQRVALGRAL 148
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 831463781 151 AQDTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFASCYSDYMVALKDGAVV 215
Cdd:COG3839 149 VREPKVFLLDEPLSNLDAKLRVEMRAEIKRLHRRLGTTTIYVTHDQVEAMTLADRIAVMNDGRIQ 213
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
2-214 |
2.06e-39 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 136.70 E-value: 2.06e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEElaKKISILK 81
Cdd:cd03296 3 IEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQE--RNVGFVF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 82 QSNHIAARLTVHELVSFG-RFPYSRGRLTRQD-RDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYIFL 159
Cdd:cd03296 81 QHYALFRHMTVFDNVAFGlRVKPRSERPPEAEiRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLL 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 831463781 160 DEPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFASCYSDYMVALKDGAV 214
Cdd:cd03296 161 DEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRI 215
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
2-218 |
7.43e-39 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 134.42 E-value: 7.43e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARyRTEELAKKISILK 81
Cdd:cd03265 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR-EPREVRRRIGIVF 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 82 QSNHIAARLTVHE-LVSFGRFpYSRGRLTRQDRdyVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYIFLD 160
Cdd:cd03265 80 QDLSVDDELTGWEnLYIHARL-YGVPGAERRER--IDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLD 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 831463781 161 EPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFASCYSDYMVALKDGAVVCEG 218
Cdd:cd03265 157 EPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEG 214
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
13-238 |
9.53e-39 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 135.72 E-value: 9.53e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 13 GKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDG--------GEIWIEGKEIARYRTEELAKKISILKQSN 84
Cdd:PRK13547 13 HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGaprgarvtGDVTLNGEPLAAIDAPRLARLRAVLPQAA 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 85 HIAARLTVHELVSFGRFPYSR--GRLTRQDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQ---------D 153
Cdd:PRK13547 93 QPAFAFSAREIVLLGRYPHARraGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQlwpphdaaqP 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 154 TDYIFLDEPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGDVSSIMRDEVLRGIY 233
Cdd:PRK13547 173 PRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADVLTPAHIARCY 252
|
....*
gi 831463781 234 DLDVR 238
Cdd:PRK13547 253 GFAVR 257
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
2-218 |
3.93e-38 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 132.63 E-value: 3.93e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRYGG--KTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELaKKISI 79
Cdd:cd03263 1 LQIRNLTKTYKKgtKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAAR-QSLGY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 80 LKQSNHIAARLTVHELVSFgrfpYSRGR-LTRQDRDYVREA-IRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYI 157
Cdd:cd03263 80 CPQFDALFDELTVREHLRF----YARLKgLPKSEIKEEVELlLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVL 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 831463781 158 FLDEPLNNLDMKHAVQMMKVLRKLVDelGKTIVMVMHDINFASCYSDYMVALKDGAVVCEG 218
Cdd:cd03263 156 LLDEPTSGLDPASRRAIWDLILEVRK--GRSIILTTHSMDEAEALCDRIAIMSDGKLRCIG 214
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
1-215 |
9.65e-38 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 131.71 E-value: 9.65e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRY-GGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAK---K 76
Cdd:COG2884 1 MIRFENVSKRYpGGREALSDVSLEIEKGEFVFLTGPSGAGKSTLLKLLYGEERPTSGQVLVNGQDLSRLKRREIPYlrrR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 77 ISILKQSNHIAARLTVHELVSFG-RFpysRGRLTRQDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTD 155
Cdd:COG2884 81 IGVVFQDFRLLPDRTVYENVALPlRV---TGKSRKEIRRRVREVLDLVGLSDKAKALPHELSGGEQQRVAIARALVNRPE 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 156 YIFLDEPLNNLDMKHAVQMMKVLRKLvDELGKTIVMVMHDINFASCYSDYMVALKDGAVV 215
Cdd:COG2884 158 LLLADEPTGNLDPETSWEIMELLEEI-NRRGTTVLIATHDLELVDRMPKRVLELEDGRLV 216
|
|
| BtuD |
COG4138 |
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism]; ... |
20-246 |
4.35e-37 |
|
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism];
Pssm-ID: 443313 [Multi-domain] Cd Length: 248 Bit Score: 130.73 E-value: 4.35e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 20 VSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKdGGEIWIEGKEIARYRTEELAKKISILKQSNHIAARLTVHELVSFG 99
Cdd:COG4138 15 ISAQVNAGELIHLIGPNGAGKSTLLARMAGLLPG-QGEILLNGRPLSDWSAAELARHRAYLSQQQSPPFAMPVFQYLALH 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 100 rfpYSRGRLTRQDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQ-------DTDYIFLDEPLNNLDMKHAV 172
Cdd:COG4138 94 ---QPAGASSEAVEQLLAQLAEALGLEDKLSRPLTQLSGGEWQRVRLAAVLLQvwptinpEGQLLLLDEPMNSLDVAQQA 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 831463781 173 QMMKVLRKLVdELGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGDVSSIMRDEVLRGIYDLDVRVQTIENRR 246
Cdd:COG4138 171 ALDRLLRELC-QQGITVVMSSHDLNHTLRHADRVWLLKQGKLVASGETAEVMTPENLSEVFGVKFRRLEVEGHR 243
|
|
| ECF_ATPase_2 |
TIGR04521 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
2-227 |
5.62e-37 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the downstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275314 [Multi-domain] Cd Length: 277 Bit Score: 131.42 E-value: 5.62e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRYGGKT-----VIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTE---EL 73
Cdd:TIGR04521 1 IKLKNVSYIYQPGTpfekkALDDVSLTIEDGEFVAIIGHTGSGKSTLIQHLNGLLKPTSGTVTIDGRDITAKKKKklkDL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 74 AKKISILKQ-SNHIAARLTVHELVSFGrfPYSRGrLTRQD-RDYVREAIRYMEL-EPLQDRYMDELSGGQRQRAYIAMVL 150
Cdd:TIGR04521 81 RKKVGLVFQfPEHQLFEETVYKDIAFG--PKNLG-LSEEEaEERVKEALELVGLdEEYLERSPFELSGGQMRRVAIAGVL 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 831463781 151 AQDTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGDVSSIMRDE 227
Cdd:TIGR04521 158 AMEPEVLILDEPTAGLDPKGRKEILDLFKRLHKEKGLTVILVTHSMEDVAEYADRVIVMHKGKIVLDGTPREVFSDV 234
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
2-229 |
3.31e-36 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 129.09 E-value: 3.31e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRY-GGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAKKISIL 80
Cdd:PRK13647 5 IEVEDLHFRYkDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 81 KQS--NHIAArLTVHELVSFGrfPYSRGRLTRQDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYIF 158
Cdd:PRK13647 85 FQDpdDQVFS-STVWDDVAFG--PVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIV 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 831463781 159 LDEPLNNLDMKHAVQMMKVLRKLVDElGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGDVSSIMRDEVL 229
Cdd:PRK13647 162 LDEPMAYLDPRGQETLMEILDRLHNQ-GKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLTDEDIV 231
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
2-223 |
7.81e-36 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 126.91 E-value: 7.81e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIP-----KDGGEIWIEGKEIA--RYRTEELA 74
Cdd:cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDlipgaPDEGEVLLDGKDIYdlDVDVLELR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 75 KKISILKQS-NHIaaRLTVHELVSFGrfPYSRGRLTRQDRDY-VREAIRYMEL-EPLQDR-YMDELSGGQRQRAYIAMVL 150
Cdd:cd03260 81 RRVGMVFQKpNPF--PGSIYDNVAYG--LRLHGIKLKEELDErVEEALRKAALwDEVKDRlHALGLSGGQQQRLCLARAL 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 831463781 151 AQDTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDELgkTIVMVMHDINFASCYSDYMVALKDGAVVCEGDVSSI 223
Cdd:cd03260 157 ANEPEVLLLDEPTSALDPISTAKIEELIAELKKEY--TIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
5-215 |
8.79e-36 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 128.14 E-value: 8.79e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 5 KQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEEL----AKKISIL 80
Cdd:cd03294 28 EEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELrelrRKKISMV 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 81 KQSNHIAARLTVHELVSFGRFPYSRGRLTRQDRdyVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYIFLD 160
Cdd:cd03294 108 FQSFALLPHRTVLENVAFGLEVQGVPRAEREER--AAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMD 185
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 831463781 161 EPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFASCYSDYMVALKDGAVV 215
Cdd:cd03294 186 EAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLV 240
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
3-226 |
1.24e-35 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 126.39 E-value: 1.24e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 3 EVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAKK-ISILK 81
Cdd:cd03224 2 EVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAgIGYVP 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 82 QSNHIAARLTVHELVSFGRFPYSRGRLtRQDRDYVREaiRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYIFLDE 161
Cdd:cd03224 82 EGRRIFPELTVEENLLLGAYARRRAKR-KARLERVYE--LFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDE 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 831463781 162 PLNNLDMKHAVQMMKVLRKLVDElGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGDVSSIMRD 226
Cdd:cd03224 159 PSEGLAPKIVEEIFEAIRELRDE-GVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLAD 222
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
17-164 |
2.74e-35 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 123.14 E-value: 2.74e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 17 IDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAKKISILKQSNHIAARLTVHELV 96
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKEIGYVFQDPQLFPRLTVRENL 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 831463781 97 SFGRFPYSRGRLTRQDRdyVREAIRYMELEPLQDR----YMDELSGGQRQRAYIAMVLAQDTDYIFLDEPLN 164
Cdd:pfam00005 81 RLGLLLKGLSKREKDAR--AEEALEKLGLGDLADRpvgeRPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA 150
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
1-233 |
4.43e-35 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 125.09 E-value: 4.43e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAKK-ISI 79
Cdd:COG0410 3 MLEVENLHAGYGGIHVLHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLPPRSGSIRFDGEDITGLPPHRIARLgIGY 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 80 LKQSNHIAARLTVHE--LVsfgrfpysrGRLTRQDRDYVREAIRYM-----ELEPLQDRYMDELSGGQRQRAYIAMVLAQ 152
Cdd:COG0410 83 VPEGRRIFPSLTVEEnlLL---------GAYARRDRAEVRADLERVyelfpRLKERRRQRAGTLSGGEQQMLAIGRALMS 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 153 DTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDElGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGDVSSIMRDEVLRGI 232
Cdd:COG0410 154 RPKLLLLDEPSLGLAPLIVEEIFEIIRRLNRE-GVTILLVEQNARFALEIADRAYVLERGRIVLEGTAAELLADPEVREA 232
|
.
gi 831463781 233 Y 233
Cdd:COG0410 233 Y 233
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
1-219 |
5.17e-35 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 125.11 E-value: 5.17e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTE--ELAKKIS 78
Cdd:COG1126 1 MIEIENLHKSFGDLEVLKGISLDVEKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTITVDGEDLTDSKKDinKLRRKVG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 79 ILKQS----NHiaarLTVHELVSFGrfPYSRGRLTRQD-RDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQD 153
Cdd:COG1126 81 MVFQQfnlfPH----LTVLENVTLA--PIKVKKMSKAEaEERAMELLERVGLADKADAYPAQLSGGQQQRVAIARALAME 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 831463781 154 TDYIFLDEPLNNLD--MKHAVqmMKVLRKLVDElGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGD 219
Cdd:COG1126 155 PKVMLFDEPTSALDpeLVGEV--LDVMRDLAKE-GMTMVVVTHEMGFAREVADRVVFMDGGRIVEEGP 219
|
|
| OpuBA |
COG1125 |
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and ... |
1-215 |
6.25e-35 |
|
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440742 [Multi-domain] Cd Length: 306 Bit Score: 126.74 E-value: 6.25e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRY-GGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAKKISI 79
Cdd:COG1125 1 MIEFENVTKRYpDGTVAVDDLSLTIPAGEFTVLVGPSGCGKTTTLRMINRLIEPTSGRILIDGEDIRDLDPVELRRRIGY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 80 LKQSN----HiaarLTVHE---LVsfgrfPYSRGRLTRQDRDYVREAIRYMELEPLQ--DRYMDELSGGQRQRAYIAMVL 150
Cdd:COG1125 81 VIQQIglfpH----MTVAEniaTV-----PRLLGWDKERIRARVDELLELVGLDPEEyrDRYPHELSGGQQQRVGVARAL 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 831463781 151 AQDTDYIFLDEPLNNLD--MKHAVQmmKVLRKLVDELGKTIVMVMHDINFASCYSDYMVALKDGAVV 215
Cdd:COG1125 152 AADPPILLMDEPFGALDpiTREQLQ--DELLRLQRELGKTIVFVTHDIDEALKLGDRIAVMREGRIV 216
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
3-212 |
1.86e-34 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 122.62 E-value: 1.86e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 3 EVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAKKISILKQ 82
Cdd:COG4619 2 ELEGLSFRVGGKPILSPVSLTLEAGECVAITGPSGSGKSTLLRALADLDPPTSGEIYLDGKPLSAMPPPEWRRQVAYVPQ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 83 SNHIAARlTVHELVsfgRFPYSRgRLTRQDRDYVREAIRYMELEP-LQDRYMDELSGGQRQRAYIAMVLAQDTDYIFLDE 161
Cdd:COG4619 82 EPALWGG-TVRDNL---PFPFQL-RERKFDRERALELLERLGLPPdILDKPVERLSGGERQRLALIRALLLQPDVLLLDE 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 831463781 162 PLNNLD--MKHAVQmmKVLRKLVDELGKTIVMVMHDINFASCYSDYMVALKDG 212
Cdd:COG4619 157 PTSALDpeNTRRVE--ELLREYLAEEGRAVLWVSHDPEQIERVADRVLTLEAG 207
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
2-214 |
2.84e-34 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 122.64 E-value: 2.84e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEI--ARYRTEELAKKISI 79
Cdd:cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLtdDKKNINELRQKVGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 80 LKQSNHIAARLTVHELVSFGrfpySRGRLTRQDRDYVREAIRYME---LEPLQDRYMDELSGGQRQRAYIAMVLAQDTDY 156
Cdd:cd03262 81 VFQQFNLFPHLTVLENITLA----PIKVKGMSKAEAEERALELLEkvgLADKADAYPAQLSGGQQQRVAIARALAMNPKV 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 831463781 157 IFLDEPLNNLDMKHAVQMMKVLRKLVDElGKTIVMVMHDINFASCYSDYMVALKDGAV 214
Cdd:cd03262 157 MLFDEPTSALDPELVGEVLDVMKDLAEE-GMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
2-215 |
2.93e-34 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 126.03 E-value: 2.93e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEI-----ARYRteelakK 76
Cdd:COG1118 3 IEVRNISKRFGSFTLLDDVSLEIASGELVALLGPSGSGKTTLLRIIAGLETPDSGRIVLNGRDLftnlpPRER------R 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 77 ISILKQsnHIAA--RLTVHELVSFGrfPYSRGRLTRQDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDT 154
Cdd:COG1118 77 VGFVFQ--HYALfpHMTVAENIAFG--LRVRPPSKAEIRARVEELLELVQLEGLADRYPSQLSGGQRQRVALARALAVEP 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 831463781 155 DYIFLDEPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFASCYSDYMVALKDGAVV 215
Cdd:COG1118 153 EVLLLDEPFGALDAKVRKELRRWLRRLHDELGGTTVFVTHDQEEALELADRVVVMNQGRIE 213
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
2-215 |
5.81e-34 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 125.22 E-value: 5.81e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEElaKKISILK 81
Cdd:PRK11432 7 VVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQ--RDICMVF 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 82 QSNHIAARLTVHELVSFGRFPYSRGRLTRQDRdyVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYIFLDE 161
Cdd:PRK11432 85 QSYALFPHMSLGENVGYGLKMLGVPKEERKQR--VKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDE 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 831463781 162 PLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFASCYSDYMVALKDGAVV 215
Cdd:PRK11432 163 PLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIM 216
|
|
| FtsE |
TIGR02673 |
cell division ATP-binding protein FtsE; This model describes FtsE, a member of the ABC ... |
1-195 |
7.72e-34 |
|
cell division ATP-binding protein FtsE; This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. [Cellular processes, Cell division]
Pssm-ID: 131721 [Multi-domain] Cd Length: 214 Bit Score: 121.20 E-value: 7.72e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRYGGKTVI-DRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAK---K 76
Cdd:TIGR02673 1 MIEFHNVSKAYPGGVAAlHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLlrrR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 77 ISILKQSNHIAARLTVHELVSFgrfPYS-RGRLTRQDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTD 155
Cdd:TIGR02673 81 IGVVFQDFRLLPDRTVYENVAL---PLEvRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPP 157
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 831463781 156 YIFLDEPLNNLDMKHAVQMMKVLRKLvDELGKTIVMVMHD 195
Cdd:TIGR02673 158 LLLADEPTGNLDPDLSERILDLLKRL-NKRGTTVIVATHD 196
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
19-218 |
2.80e-33 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 119.91 E-value: 2.80e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 19 RVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARyrTEELAKKISILKQSNHIAARLTVHELVSF 98
Cdd:cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTA--APPADRPVSMLFQENNLFAHLTVEQNVGL 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 99 GRFPysRGRLTRQDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYIFLDEPLNNLDMKHAVQMMKVL 178
Cdd:cd03298 94 GLSP--GLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLV 171
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 831463781 179 RKLVDELGKTIVMVMHDINFASCYSDYMVALKDGAVVCEG 218
Cdd:cd03298 172 LDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
11-215 |
3.38e-33 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 119.28 E-value: 3.38e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 11 YGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARyrtEELAKKISILKQ-SNHIAAR 89
Cdd:cd03226 10 KKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYVMQdVDYQLFT 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 90 LTVHELVSFGRFPYSRGRLTrqdrdyVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYIFLDEPLNNLDMK 169
Cdd:cd03226 87 DSVREELLLGLKELDAGNEQ------AETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYK 160
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 831463781 170 HAVQMMKVLRKLVDElGKTIVMVMHDINFASCYSDYMVALKDGAVV 215
Cdd:cd03226 161 NMERVGELIRELAAQ-GKAVIVITHDYEFLAKVCDRVLLLANGAIV 205
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
1-232 |
6.13e-33 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 121.11 E-value: 6.13e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRYG-GKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEI--ARYRTEELAKKI 77
Cdd:PRK13636 5 ILKVEELNYNYSdGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIdySRKGLMKLRESV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 78 SILKQS-NHIAARLTVHELVSFGrfPYSRGRLTRQDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDY 156
Cdd:PRK13636 85 GMVFQDpDNQLFSASVYQDVSFG--AVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKV 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 831463781 157 IFLDEPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGDVSSIMRD-EVLRGI 232
Cdd:PRK13636 163 LVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEkEMLRKV 239
|
|
| thiQ |
TIGR01277 |
thiamine ABC transporter, ATP-binding protein; This model describes the energy-transducing ... |
10-219 |
6.72e-33 |
|
thiamine ABC transporter, ATP-binding protein; This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. [Transport and binding proteins, Other]
Pssm-ID: 130344 [Multi-domain] Cd Length: 213 Bit Score: 118.81 E-value: 6.72e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 10 RYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARyrTEELAKKISILKQSNHIAAR 89
Cdd:TIGR01277 7 RYEYEHLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTG--LAPYQRPVSMLFQENNLFAH 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 90 LTVHELVSFGRFPYSRgrLTRQDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYIFLDEPLNNLDMK 169
Cdd:TIGR01277 85 LTVRQNIGLGLHPGLK--LNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPL 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 831463781 170 HAVQMMKVLRKLVDELGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGD 219
Cdd:TIGR01277 163 LREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1-247 |
1.05e-32 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 120.60 E-value: 1.05e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIAR-------YRTEE- 72
Cdd:COG4152 1 MLELKGLTKRFGDKTAVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAPDSGEVLWDGEPLDPedrrrigYLPEEr 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 73 -LAKKISILKQsnhiaarltvheLVSFGRFpysRGrLTRQDrdyVREAIRYM----ELEPLQDRYMDELSGGQRQRAYIA 147
Cdd:COG4152 81 gLYPKMKVGEQ------------LVYLARL---KG-LSKAE---AKRRADEWlerlGLGDRANKKVEELSKGNQQKVQLI 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 148 MVLAQDTDYIFLDEPLNNLDmKHAVQMMK-VLRKLVDElGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGDVSSImRD 226
Cdd:COG4152 142 AALLHDPELLILDEPFSGLD-PVNVELLKdVIRELAAK-GTTVIFSSHQMELVEELCDRIVIINKGRKVLSGSVDEI-RR 218
|
250 260
....*....|....*....|.
gi 831463781 227 EVLRGIYDLDVRVQTIENRRI 247
Cdd:COG4152 219 QFGRNTLRLEADGDAGWLRAL 239
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
2-218 |
1.07e-32 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 118.15 E-value: 1.07e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIAR-------YRTEE-- 72
Cdd:cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIaarnrigYLPEErg 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 73 LAKKISILKQSNHIaARLtvhelvsfgrfpysRGRLTRQDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQ 152
Cdd:cd03269 81 LYPKMKVIDQLVYL-AQL--------------KGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIH 145
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 831463781 153 DTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDElGKTIVMVMHDINFASCYSDYMVALKDGAVVCEG 218
Cdd:cd03269 146 DPELLILDEPFSGLDPVNVELLKDVIRELARA-GKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
2-214 |
1.79e-32 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 117.89 E-value: 1.79e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRYGGKTV-IDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAK---KI 77
Cdd:cd03292 1 IEFINVTKTYPNGTAaLDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYlrrKI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 78 SILKQSNHIAARLTVHELVSFG-RFPYSRGRLTRQDrdyVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDY 156
Cdd:cd03292 81 GVVFQDFRLLPDRNVYENVAFAlEVTGVPPREIRKR---VPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTI 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 831463781 157 IFLDEPLNNLDMKHAVQMMKVLRKlVDELGKTIVMVMHDINFASCYSDYMVALKDGAV 214
Cdd:cd03292 158 LIADEPTGNLDPDTTWEIMNLLKK-INKAGTTVVVATHAKELVDTTRHRVIALERGKL 214
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
1-223 |
1.94e-32 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 118.45 E-value: 1.94e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRYGGK----TVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEEL--- 73
Cdd:cd03258 1 MIELKNVSKVFGDTggkvTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELrka 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 74 AKKISILKQSNHIAARLTVHELVSFgrfPYSRGRLTRQDRDY-VREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQ 152
Cdd:cd03258 81 RRRIGMIFQHFNLLSSRTVFENVAL---PLEIAGVPKAEIEErVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALAN 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 831463781 153 DTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGDVSSI 223
Cdd:cd03258 158 NPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEV 228
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
1-223 |
2.04e-32 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 119.10 E-value: 2.04e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEI---ARYRTEELAKKI 77
Cdd:PRK11831 7 LVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIpamSRSRLYTVRKRM 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 78 SILKQSNHIAARLTVHELVSfgrFPYSRGrlTRQDRDYVREAIrYMELEPLQDR----YM-DELSGGQRQRAYIAMVLAQ 152
Cdd:PRK11831 87 SMLFQSGALFTDMNVFDNVA---YPLREH--TQLPAPLLHSTV-MMKLEAVGLRgaakLMpSELSGGMARRAALARAIAL 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 831463781 153 DTDYIFLDEPLNNLDmkhaVQMMKVLRKLVDE----LGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGDVSSI 223
Cdd:PRK11831 161 EPDLIMFDEPFVGQD----PITMGVLVKLISElnsaLGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQAL 231
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
1-231 |
2.28e-32 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 119.41 E-value: 2.28e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRY-GGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIaRYRTEELA---KK 76
Cdd:PRK13639 1 ILETRDLKYSYpDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPI-KYDKKSLLevrKT 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 77 ISILKQS--NHIAARlTVHELVSFGrfPYSRGRLTRQDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDT 154
Cdd:PRK13639 80 VGIVFQNpdDQLFAP-TVEEDVAFG--PLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKP 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 831463781 155 DYIFLDEPLNNLDMKHAVQMMKVLRKLVDElGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGDVSSIMRD-EVLRG 231
Cdd:PRK13639 157 EIIVLDEPTSGLDPMGASQIMKLLYDLNKE-GITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSDiETIRK 233
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
2-227 |
5.75e-32 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 122.56 E-value: 5.75e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRY-GGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAKKISIL 80
Cdd:COG4988 337 IELEDVSFSYpGGRPALDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLPPYSGSILINGVDLSDLDPASWRRQIAWV 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 81 KQSNHIAArLTVHELVSFGRFPYSRGRLtrqdrdyvREAIR----YMELEPLQDRYmDE--------LSGGQRQRAYIAM 148
Cdd:COG4988 417 PQNPYLFA-GTIRENLRLGRPDASDEEL--------EAALEaaglDEFVAALPDGL-DTplgeggrgLSGGQAQRLALAR 486
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 831463781 149 VLAQDTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDelGKTIVMVMHDINFASCYsDYMVALKDGAVVCEGDVSSIMRDE 227
Cdd:COG4988 487 ALLRDAPLLLLDEPTAHLDAETEAEILQALRRLAK--GRTVILITHRLALLAQA-DRILVLDDGRIVEQGTHEELLAKN 562
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
2-218 |
1.26e-31 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 115.39 E-value: 1.26e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIAryRTEELAKKISILK 81
Cdd:cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQ--KNIEALRRIGALI 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 82 QSNHIAARLTVHELVSFGrfpysrGRLTRQDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYIFLDE 161
Cdd:cd03268 79 EAPGFYPNLTARENLRLL------ARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDE 152
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 831463781 162 PLNNLDMKHAVQMMKVLRKLVDElGKTIVMVMHDINFASCYSDYMVALKDGAVVCEG 218
Cdd:cd03268 153 PTNGLDPDGIKELRELILSLRDQ-GITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
8-223 |
1.26e-31 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 116.28 E-value: 1.26e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 8 LKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEElaKKISILKQSNHIA 87
Cdd:cd03299 6 LSKDWKEFKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEK--RDISYVPQNYALF 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 88 ARLTVHELVSFGRFPYSRGRLTRQDRdyVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYIFLDEPLNNLD 167
Cdd:cd03299 84 PHMTVYKNIAYGLKKRKVDKKEIERK--VLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALD 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 831463781 168 MKHAVQMMKVLRKLVDELGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGDVSSI 223
Cdd:cd03299 162 VRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEV 217
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
19-228 |
2.50e-31 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 115.45 E-value: 2.50e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 19 RVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEiarYRTEELAKK-ISILKQSNHIAARLTVHELVS 97
Cdd:PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQD---HTTTPPSRRpVSMLFQENNLFSHLTVAQNIG 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 98 FGRFPysrG-RLTRQDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYIFLDEPLNNLDMKHAVQMMK 176
Cdd:PRK10771 94 LGLNP---GlKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLT 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 831463781 177 VLRKLVDELGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGDVSSIMRDEV 228
Cdd:PRK10771 171 LVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSGKA 222
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
2-212 |
3.05e-31 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 113.25 E-value: 3.05e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRYGGKT--VIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAKKISI 79
Cdd:cd03228 1 IEFKNVSFSYPGRPkpVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 80 LKQSNHIaarltvhelvsfgrFPYSrgrltrqdrdyVREAIrymeleplqdrymdeLSGGQRQRAYIAMVLAQDTDYIFL 159
Cdd:cd03228 81 VPQDPFL--------------FSGT-----------IRENI---------------LSGGQRQRIAIARALLRDPPILIL 120
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 831463781 160 DEPLNNLDMKHAVQMMKVLRKLVDelGKTIVMVMHDINFASCYsDYMVALKDG 212
Cdd:cd03228 121 DEATSALDPETEALILEALRALAK--GKTVIVIAHRLSTIRDA-DRIIVLDDG 170
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
2-233 |
3.53e-31 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 114.95 E-value: 3.53e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAKK-ISIL 80
Cdd:cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLgIGYL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 81 KQSNHIAARLTVHE--LVSFGRFPYSRgrltRQDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYIF 158
Cdd:cd03218 81 PQEASIFRKLTVEEniLAVLEIRGLSK----KEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLL 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 831463781 159 LDEPLNNLDMKhAVQMMKVLRKLVDELGKTIVMVMHDIN--FASCYSDYMvaLKDGAVVCEGDVSSIMRDEVLRGIY 233
Cdd:cd03218 157 LDEPFAGVDPI-AVQDIQKIIKILKDRGIGVLITDHNVRetLSITDRAYI--IYEGKVLAEGTPEEIAANELVRKVY 230
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
1-199 |
3.66e-31 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 115.19 E-value: 3.66e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEE--LAKKIS 78
Cdd:PRK09493 1 MIEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDErlIRQEAG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 79 ILKQSNHIAARLTVHELVSFGrfP-YSRGRLTRQDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYI 157
Cdd:PRK09493 81 MVFQQFYLFPHLTALENVMFG--PlRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLM 158
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 831463781 158 FLDEPLNNLD--MKHAVqmMKVLRKLVDElGKTIVMVMHDINFA 199
Cdd:PRK09493 159 LFDEPTSALDpeLRHEV--LKVMQDLAEE-GMTMVIVTHEIGFA 199
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
2-218 |
3.62e-30 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 111.90 E-value: 3.62e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRYGGKTVIDRVSLSVPRrKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRtEELAKKISILK 81
Cdd:cd03264 1 LQLENLTKRYGKKRALDGVSLTLGP-GMYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIGYLP 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 82 QSNHIAARLTVHELVSFgrFPYSRGRLTRQDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYIFLDE 161
Cdd:cd03264 79 QEFGVYPNFTVREFLDY--IAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDE 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 831463781 162 PLNNLDMKHAVqmmkVLRKLVDELG--KTIVMVMHDINFASCYSDYMVALKDGAVVCEG 218
Cdd:cd03264 157 PTAGLDPEERI----RFRNLLSELGedRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
2-227 |
4.17e-30 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 117.56 E-value: 4.17e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRY--GGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAKKISI 79
Cdd:COG4987 334 LELEDVSFRYpgAGRPVLDGLSLTLPPGERVAIVGPSGSGKSTLLALLLRFLDPQSGSITLGGVDLRDLDEDDLRRRIAV 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 80 LKQSNHI-AArlTVHE-LvsfgrfpysrgRLTRQD--RDYVREAIRYMELEPLQDRY-------MDE----LSGGQRQRA 144
Cdd:COG4987 414 VPQRPHLfDT--TLREnL-----------RLARPDatDEELWAALERVGLGDWLAALpdgldtwLGEggrrLSGGERRRL 480
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 145 YIAMVLAQDTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDelGKTIVMVMHDINFAScYSDYMVALKDGAVVCEGDVSSIM 224
Cdd:COG4987 481 ALARALLRDAPILLLDEPTEGLDAATEQALLADLLEALA--GRTVLLITHRLAGLE-RMDRILVLEDGRIVEQGTHEELL 557
|
...
gi 831463781 225 RDE 227
Cdd:COG4987 558 AQN 560
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
1-230 |
5.83e-30 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 116.66 E-value: 5.83e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEE-LAKKISI 79
Cdd:COG1129 4 LLEMRGISKSFGGVKALDGVSLELRPGEVHALLGENGAGKSTLMKILSGVYQPDSGEILLDGEPVRFRSPRDaQAAGIAI 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 80 LKQSNHIAARLTVHELVSFGRFPYSRGRLtrQDRDYVREAIRYME-----LEPlqDRYMDELSGGQRQRAYIAMVLAQDT 154
Cdd:COG1129 84 IHQELNLVPNLSVAENIFLGREPRRGGLI--DWRAMRRRARELLArlgldIDP--DTPVGDLSVAQQQLVEIARALSRDA 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 831463781 155 DYIFLDEPLNNLDMKHAVQMMKVLRKLVDElGKTIVMVMHDIN--FASCysDYMVALKDGAVVCEGDVSSIMRDEVLR 230
Cdd:COG1129 160 RVLILDEPTASLTEREVERLFRIIRRLKAQ-GVAIIYISHRLDevFEIA--DRVTVLRDGRLVGTGPVAELTEDELVR 234
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
2-223 |
7.18e-30 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 111.93 E-value: 7.18e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLI-----PKDGGEIWIEGKEIARYRTEELAKK 76
Cdd:PRK14247 4 IEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIelypeARVSGEVYLDGQDIFKMDVIELRRR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 77 ISILKQSNHIAARLTVHELVSFG----RFPYSRGRLtrQDRdyVREAIRYMEL-EPLQDRY---MDELSGGQRQRAYIAM 148
Cdd:PRK14247 84 VQMVFQIPNPIPNLSIFENVALGlklnRLVKSKKEL--QER--VRWALEKAQLwDEVKDRLdapAGKLSGGQQQRLCIAR 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 831463781 149 VLAQDTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDELgkTIVMVMHDINFASCYSDYMVALKDGAVVCEGDVSSI 223
Cdd:PRK14247 160 ALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDM--TIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREV 232
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
29-215 |
7.55e-30 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 110.85 E-value: 7.55e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 29 LTSLIGPNGAGKSTLLSMMSRLIPKDGGEI------WIEGKEIARYRTEElaKKISILKQSNHIAARLTVHELVSFGrfp 102
Cdd:cd03297 25 VTGIFGASGAGKSTLLRCIAGLEKPDGGTIvlngtvLFDSRKKINLPPQQ--RKIGLVFQQYALFPHLNVRENLAFG--- 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 103 ySRGRLTRQDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYIFLDEPLNNLDMKHAVQMMKVLRKLV 182
Cdd:cd03297 100 -LKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIK 178
|
170 180 190
....*....|....*....|....*....|...
gi 831463781 183 DELGKTIVMVMHDINFASCYSDYMVALKDGAVV 215
Cdd:cd03297 179 KNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQ 211
|
|
| urea_trans_UrtE |
TIGR03410 |
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC ... |
3-230 |
7.78e-30 |
|
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274567 [Multi-domain] Cd Length: 230 Bit Score: 111.46 E-value: 7.78e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 3 EVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAKK-ISILK 81
Cdd:TIGR03410 2 EVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAgIAYVP 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 82 QSNHIAARLTVHELVSFGRFPysRGRLTRQDRDYVREaiRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYIFLDE 161
Cdd:TIGR03410 82 QGREIFPRLTVEENLLTGLAA--LPRRSRKIPDEIYE--LFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDE 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 831463781 162 PLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGDVSSIMRDEVLR 230
Cdd:TIGR03410 158 PTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELDEDKVRR 226
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
2-217 |
1.10e-29 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 109.06 E-value: 1.10e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEE-LAKKISil 80
Cdd:cd03216 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDaRRAGIA-- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 81 kqsnhiaarlTVHelvsfgrfpysrgrltrqdrdyvreairymeleplqdrymdELSGGQRQRAYIAMVLAQDTDYIFLD 160
Cdd:cd03216 79 ----------MVY-----------------------------------------QLSVGERQMVEIARALARNARLLILD 107
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 831463781 161 EPLNNLDMKHAVQMMKVLRKLVDElGKTIVMVMHDINFASCYSDYMVALKDGAVVCE 217
Cdd:cd03216 108 EPTAALTPAEVERLFKVIRRLRAQ-GVAVIFISHRLDEVFEIADRVTVLRDGRVVGT 163
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
2-227 |
1.25e-29 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 112.87 E-value: 1.25e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRYGGKT-----VIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEI-WI---EGKEIARYRTEE 72
Cdd:PRK13651 3 IKVKNIVKIFNKKLptelkALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIeWIfkdEKNKKKTKEKEK 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 73 LAKKISI-------LKQSNHIAARL--------------TVHELVSFGrfPYSRGrlTRQDRDYVReAIRYMELEPLQDR 131
Cdd:PRK13651 83 VLEKLVIqktrfkkIKKIKEIRRRVgvvfqfaeyqlfeqTIEKDIIFG--PVSMG--VSKEEAKKR-AAKYIELVGLDES 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 132 YMD----ELSGGQRQRAYIAMVLAQDTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDElGKTIVMVMHDINFASCYSDYMV 207
Cdd:PRK13651 158 YLQrspfELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQ-GKTIILVTHDLDNVLEWTKRTI 236
|
250 260
....*....|....*....|
gi 831463781 208 ALKDGAVVCEGDVSSIMRDE 227
Cdd:PRK13651 237 FFKDGKIIKDGDTYDILSDN 256
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
1-218 |
2.66e-29 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 109.76 E-value: 2.66e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRYGGKT----VIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARyRTEELAKK 76
Cdd:cd03266 1 MITADALTKRFRDVKktvqAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 77 ISILKQSNHIAARLTVHE-LVSFGRFpysRGRLTRQDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTD 155
Cdd:cd03266 80 LGFVSDSTGLYDRLTAREnLEYFAGL---YGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPP 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 831463781 156 YIFLDEPLNNLDMKHAVQMMKVLRKLVDElGKTIVMVMHDINFASCYSDYMVALKDGAVVCEG 218
Cdd:cd03266 157 VLLLDEPTTGLDVMATRALREFIRQLRAL-GKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
2-212 |
5.04e-29 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 112.35 E-value: 5.04e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEelAKKISILK 81
Cdd:PRK09452 15 VELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHVNTVF 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 82 QSNHIAARLTVHELVSFGRFPYSRGRLTRQDRdyVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYIFLDE 161
Cdd:PRK09452 93 QSYALFPHMTVFENVAFGLRMQKTPAAEITPR--VMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDE 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 831463781 162 PLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFASCYSDYMVALKDG 212
Cdd:PRK09452 171 SLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDG 221
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
1-223 |
6.13e-29 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 111.32 E-value: 6.13e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRYGGK----TVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELA-- 74
Cdd:COG1135 1 MIELENLSKTFPTKggpvTALDDVSLTIEKGEIFGIIGYSGAGKSTLIRCINLLERPTSGSVLVDGVDLTALSERELRaa 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 75 -KKIS-ILKQSNHIAARlTVHELVSfgrFP-----YSRGRltRQDRdyVREAIRYMELEPLQDRYMDELSGGQRQRAYIA 147
Cdd:COG1135 81 rRKIGmIFQHFNLLSSR-TVAENVA---LPleiagVPKAE--IRKR--VAELLELVGLSDKADAYPSQLSGGQKQRVGIA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 148 MVLAQDTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHD------InfasCysDYMVALKDGAVVCEGDVS 221
Cdd:COG1135 153 RALANNPKVLLCDEATSALDPETTRSILDLLKDINRELGLTIVLITHEmdvvrrI----C--DRVAVLENGRIVEQGPVL 226
|
..
gi 831463781 222 SI 223
Cdd:COG1135 227 DV 228
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
32-246 |
1.45e-28 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 108.48 E-value: 1.45e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 32 LIGPNGAGKSTLLSMMSRLIPKDgGEIWIEGKEIARYRTEELAKKISILKQSNHIAARLTVhelvsfgrFPY-----SRG 106
Cdd:PRK03695 27 LVGPNGAGKSTLLARMAGLLPGS-GSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPV--------FQYltlhqPDK 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 107 RLTRQDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQ-------DTDYIFLDEPLNNLDMKHAVQMMKVLR 179
Cdd:PRK03695 98 TRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQvwpdinpAGQLLLLDEPMNSLDVAQQAALDRLLS 177
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 831463781 180 KLVdELGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGDVSSIMRDEVLRGIYDLDVRVQTIENRR 246
Cdd:PRK03695 178 ELC-QQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLTPENLAQVFGVNFRRLDVEGHP 243
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
2-209 |
9.73e-28 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 110.84 E-value: 9.73e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRYGGKT-VIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAKKISIL 80
Cdd:TIGR02857 322 LEFSGVSVAYPGRRpALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWV 401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 81 KQSNHIAARlTVHELVSFGRfPYsrgrltrQDRDYVREAIRYMELEPL-------QDRYMDE----LSGGQRQRAYIAMV 149
Cdd:TIGR02857 402 PQHPFLFAG-TIAENIRLAR-PD-------ASDAEIREALERAGLDEFvaalpqgLDTPIGEggagLSGGQAQRLALARA 472
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 150 LAQDTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDelGKTIVMVMHDINFASCYsDYMVAL 209
Cdd:TIGR02857 473 FLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQ--GRTVLLVTHRLALAALA-DRIVVL 529
|
|
| COG4674 |
COG4674 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1-233 |
9.86e-28 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443710 [Multi-domain] Cd Length: 250 Bit Score: 106.35 E-value: 9.86e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAK----- 75
Cdd:COG4674 10 ILYVEDLTVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTLMDVITGKTRPDSGSVLFGGTDLTGLDEHEIARlgigr 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 76 ---KISILKQsnhiaarLTVHE--LVSFGR----FPYSRGRLTRQDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYI 146
Cdd:COG4674 90 kfqKPTVFEE-------LTVFEnlELALKGdrgvFASLFARLTAEERDRIEEVLETIGLTDKADRLAGLLSHGQKQWLEI 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 147 AMVLAQDTDYIFLDEP---LNNLDMKHAVQMMKVLRKlvdelGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGDVSSI 223
Cdd:COG4674 163 GMLLAQDPKLLLLDEPvagMTDAETERTAELLKSLAG-----KHSVVVVEHDMEFVRQIARKVTVLHQGSVLAEGSLDEV 237
|
250
....*....|
gi 831463781 224 MRDEVLRGIY 233
Cdd:COG4674 238 QADPRVIEVY 247
|
|
| potA |
TIGR01187 |
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine ... |
32-223 |
1.03e-27 |
|
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 162242 [Multi-domain] Cd Length: 325 Bit Score: 107.96 E-value: 1.03e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 32 LIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEElaKKISILKQSNHIAARLTVHELVSFGRFPYSRGRLTRQ 111
Cdd:TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHL--RHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIK 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 112 DRdyVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDELGKTIVM 191
Cdd:TIGR01187 79 PR--VLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVF 156
|
170 180 190
....*....|....*....|....*....|..
gi 831463781 192 VMHDINFASCYSDYMVALKDGAVVCEGDVSSI 223
Cdd:TIGR01187 157 VTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEI 188
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
9-229 |
1.89e-27 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 107.89 E-value: 1.89e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 9 KRYGGKTVidRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYR------TEElaKKISILKQ 82
Cdd:TIGR02142 7 KRLGDFSL--DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRkgiflpPEK--RRIGYVFQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 83 SNHIAARLTVHELVSFGRfPYSRGRLTRQDRDYVreaIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYIFLDEP 162
Cdd:TIGR02142 83 EARLFPHLSVRGNLRYGM-KRARPSERRISFERV---IELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEP 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 831463781 163 LNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGDVSSIMRDEVL 229
Cdd:TIGR02142 159 LAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDL 225
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
1-227 |
1.95e-27 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 106.23 E-value: 1.95e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRYGG--KTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAKKIS 78
Cdd:PRK13632 7 MIKVENVSFSYPNseNNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIG 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 79 ILKQ---SNHIAArlTVHELVSFGrfpYSRGRLTRQD-RDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDT 154
Cdd:PRK13632 87 IIFQnpdNQFIGA--TVEDDIAFG---LENKKVPPKKmKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNP 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 831463781 155 DYIFLDEPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFAsCYSDYMVALKDGAVVCEGDVSSIMRDE 227
Cdd:PRK13632 162 EIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEA-ILADKVIVFSEGKLIAQGKPKEILNNK 233
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
1-215 |
2.38e-27 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 104.82 E-value: 2.38e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRYGGK----TVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAK- 75
Cdd:COG4181 8 IIELRGLTKTVGTGagelTILKGISLEVEAGESVAIVGASGSGKSTLLGLLAGLDRPTSGTVRLAGQDLFALDEDARARl 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 76 ---KISILKQSNHIAARLTVHELVS-----FGRfpysrgrltRQDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIA 147
Cdd:COG4181 88 rarHVGFVFQSFQLLPTLTALENVMlplelAGR---------RDARARARALLERVGLGHRLDHYPAQLSGGEQQRVALA 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 831463781 148 MVLAQDTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFAS-CysDYMVALKDGAVV 215
Cdd:COG4181 159 RAFATEPAILFADEPTGNLDAATGEQIIDLLFELNRERGTTLVLVTHDPALAArC--DRVLRLRAGRLV 225
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
1-230 |
2.79e-27 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 106.04 E-value: 2.79e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRY-GGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAKKISI 79
Cdd:PRK13652 3 LIETRDLCYSYsGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 80 LKQ-SNHIAARLTVHELVSFGrfPYSRGRLTRQDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYIF 158
Cdd:PRK13652 83 VFQnPDDQIFSPTVEQDIAFG--PINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLV 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 831463781 159 LDEPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGDVSSI-MRDEVLR 230
Cdd:PRK13652 161 LDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIfLQPDLLA 233
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1-215 |
5.41e-27 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 104.78 E-value: 5.41e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRYG-G----KTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAK 75
Cdd:COG1101 1 MLELKNLSKTFNpGtvneKRALDGLNLTIEEGDFVTVIGSNGAGKSTLLNAIAGSLPPDSGSILIDGKDVTKLPEYKRAK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 76 KISILKQSNHI--AARLTVHE--LVSFGR---FPYSRGrLTRQDRDYVREAIRYMELEpLQDRyMDE----LSGGQRQRA 144
Cdd:COG1101 81 YIGRVFQDPMMgtAPSMTIEEnlALAYRRgkrRGLRRG-LTKKRRELFRELLATLGLG-LENR-LDTkvglLSGGQRQAL 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 831463781 145 YIAMVLAQDTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFASCYSDYMVALKDGAVV 215
Cdd:COG1101 158 SLLMATLTKPKLLLLDEHTAALDPKTAALVLELTEKIVEENNLTTLMVTHNMEQALDYGNRLIMMHEGRII 228
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
2-228 |
5.75e-27 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 105.66 E-value: 5.75e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARyRTEELAKKISILK 81
Cdd:PRK13537 8 IDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPS-RARHARQRVGVVP 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 82 QSNHIAARLTVHE-LVSFGRFpysRGRLTRQDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYIFLD 160
Cdd:PRK13537 87 QFDNLDPDFTVREnLLVFGRY---FGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLD 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 831463781 161 EPLNNLDMKHAVQMMKVLRKLVDElGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGDVSSIMRDEV 228
Cdd:PRK13537 164 EPTTGLDPQARHLMWERLRSLLAR-GKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIESEI 230
|
|
| YnjD |
COG4136 |
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function ... |
1-197 |
6.71e-27 |
|
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only];
Pssm-ID: 443311 [Multi-domain] Cd Length: 211 Bit Score: 103.33 E-value: 6.71e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKD---GGEIWIEGKEIARYRTEelAKKI 77
Cdd:COG4136 1 MLSLENLTITLGGRPLLAPLSLTVAPGEILTLMGPSGSGKSTLLAAIAGTLSPAfsaSGEVLLNGRRLTALPAE--QRRI 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 78 SILKQSNHIAARLTVHELVSFGrFPYSRGRLTRQDRdyVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYI 157
Cdd:COG4136 79 GILFQDDLLFPHLSVGENLAFA-LPPTIGRAQRRAR--VEQALEEAGLAGFADRDPATLSGGQRARVALLRALLAEPRAL 155
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 831463781 158 FLDEPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDIN 197
Cdd:COG4136 156 LLDEPFSKLDAALRAQFREFVFEQIRQRGIPALLVTHDEE 195
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
1-199 |
1.55e-26 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 103.24 E-value: 1.55e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEElakkiSIL 80
Cdd:PRK11248 1 MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAER-----GVV 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 81 KQSNHIAARLTVHELVSFGRFPYSRGRLTRQDRdyVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYIFLD 160
Cdd:PRK11248 76 FQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEI--AHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLD 153
|
170 180 190
....*....|....*....|....*....|....*....
gi 831463781 161 EPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFA 199
Cdd:PRK11248 154 EPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEA 192
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
1-196 |
1.61e-26 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 103.40 E-value: 1.61e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRYGG----KTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIA-----Ryrte 71
Cdd:COG4525 3 MLTVRHVSVRYPGggqpQPALQDVSLTIESGEFVVALGASGCGKTTLLNLIAGFLAPSSGEITLDGVPVTgpgadR---- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 72 elakkiSILKQSNHIAARLTVHELVSFG-RFpysRGRLTRQDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVL 150
Cdd:COG4525 79 ------GVVFQKDALLPWLNVLDNVAFGlRL---RGVPKAERRARAEELLALVGLADFARRRIWQLSGGMRQRVGIARAL 149
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 831463781 151 AQDTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDI 196
Cdd:COG4525 150 AADPRFLLMDEPFGALDALTREQMQELLLDVWQRTGKGVFLITHSV 195
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
2-237 |
1.86e-26 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 103.56 E-value: 1.86e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRYGG--KTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAKKISI 79
Cdd:PRK13635 6 IRVEHISFRYPDaaTYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGM 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 80 LKQS--NHIAARlTVHELVSFGRFPYSRGRLTRQDRdyVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYI 157
Cdd:PRK13635 86 VFQNpdNQFVGA-TVQDDVAFGLENIGVPREEMVER--VDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDII 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 158 FLDEPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFAScYSDYMVALKDGAVVCEGDVSSIMR-DEVLRGIyDLD 236
Cdd:PRK13635 163 ILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAA-QADRVIVMNKGEILEEGTPEEIFKsGHMLQEI-GLD 240
|
.
gi 831463781 237 V 237
Cdd:PRK13635 241 V 241
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
2-233 |
1.88e-26 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 107.61 E-value: 1.88e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRYGG--KTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAKKISI 79
Cdd:COG2274 474 IELENVSFRYPGdsPPVLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLYEPTSGRILIDGIDLRQIDPASLRRQIGV 553
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 80 LKQSNHIAARlTVHELVSFGRfpysrgrlTRQDRDYVREAIRYMELE------PLQ-DRYMDE----LSGGQRQRAYIAM 148
Cdd:COG2274 554 VLQDVFLFSG-TIRENITLGD--------PDATDEEIIEAARLAGLHdfiealPMGyDTVVGEggsnLSGGQRQRLAIAR 624
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 149 VLAQDTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDelGKTIVMVMHDINFAScYSDYMVALKDGAVVCEGDvssimRDEV 228
Cdd:COG2274 625 ALLRNPRILILDEATSALDAETEAIILENLRRLLK--GRTVIIIAHRLSTIR-LADRIIVLDKGRIVEDGT-----HEEL 696
|
....*..
gi 831463781 229 L--RGIY 233
Cdd:COG2274 697 LarKGLY 703
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
2-195 |
2.38e-26 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 106.68 E-value: 2.38e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRY-GGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAKKISIL 80
Cdd:TIGR02868 335 LELRDLSAGYpGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVC 414
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 81 KQSNHIAARlTVHELVSFGrfpysRGRLTRQDrdyVREAIRYMELEPLQDRYMD-----------ELSGGQRQRAYIAMV 149
Cdd:TIGR02868 415 AQDAHLFDT-TVRENLRLA-----RPDATDEE---LWAALERVGLADWLRALPDgldtvlgeggaRLSGGERQRLALARA 485
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 831463781 150 LAQDTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDelGKTIVMVMHD 195
Cdd:TIGR02868 486 LLADAPILLLDEPTEHLDAETADELLEDLLAALS--GRTVVLITHH 529
|
|
| anch_rpt_ABC |
TIGR03771 |
anchored repeat-type ABC transporter, ATP-binding subunit; This protein family is the ... |
22-226 |
2.94e-26 |
|
anchored repeat-type ABC transporter, ATP-binding subunit; This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 163483 [Multi-domain] Cd Length: 223 Bit Score: 101.85 E-value: 2.94e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 22 LSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEelakkISILKQSNHIA--ARLTVHELVSFG 99
Cdd:TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRH-----IGYVPQRHEFAwdFPISVAHTVMSG 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 100 RF----PYSRGRltRQDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYIFLDEPLNNLDMKHAVQMM 175
Cdd:TIGR03771 76 RTghigWLRRPC--VADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLT 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 831463781 176 KVLRKLVDElGKTIVMVMHDINFASCYSDYMVaLKDGAVVCEGdVSSIMRD 226
Cdd:TIGR03771 154 ELFIELAGA-GTAILMTTHDLAQAMATCDRVV-LLNGRVIADG-TPQQLQD 201
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
13-218 |
3.64e-26 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 102.65 E-value: 3.64e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 13 GKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELakkISILKQSNHI--AARL 90
Cdd:PRK15056 19 GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNL---VAYVPQSEEVdwSFPV 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 91 TVHELVSFGRFPYsRGRLTR---QDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYIFLDEPLNNLD 167
Cdd:PRK15056 96 LVEDVVMMGRYGH-MGWLRRakkRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVD 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 831463781 168 MKHAVQMMKVLRKLVDElGKTIVMVMHDINFASCYSDYMVALKdGAVVCEG 218
Cdd:PRK15056 175 VKTEARIISLLRELRDE-GKTMLVSTHNLGSVTEFCDYTVMVK-GTVLASG 223
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
2-218 |
4.60e-26 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 103.76 E-value: 4.60e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARyRTEELAKKISILK 81
Cdd:PRK13536 42 IDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPA-RARLARARIGVVP 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 82 QSNHIAARLTVHE-LVSFGRFpysRGRLTRQDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYIFLD 160
Cdd:PRK13536 121 QFDNLDLEFTVREnLLVFGRY---FGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILD 197
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 831463781 161 EPLNNLDmKHAVQMM-KVLRKLVdELGKTIVMVMHDINFASCYSDYMVALKDGAVVCEG 218
Cdd:PRK13536 198 EPTTGLD-PHARHLIwERLRSLL-ARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEG 254
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
1-226 |
5.20e-26 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 103.21 E-value: 5.20e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRYGGK----TVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPK---DGGEIWIEGKEIARYRTEEL 73
Cdd:COG0444 1 LLEVRNLKVYFPTRrgvvKAVDGVSFDVRRGETLGLVGESGSGKSTLARAILGLLPPpgiTSGEILFDGEDLLKLSEKEL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 74 ----AKKISILKQS------------NHIAARLTVHELVSfgrfpysrgrlTRQDRDYVREAIRYMELePLQDRYMD--- 134
Cdd:COG0444 81 rkirGREIQMIFQDpmtslnpvmtvgDQIAEPLRIHGGLS-----------KAEARERAIELLERVGL-PDPERRLDryp 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 135 -ELSGGQRQRAYIAMVLAQDTDYIFLDEPLNNLDmkhaV----QMMKVLRKLVDELGKTIVMVMHDINFASCYSDYMVAL 209
Cdd:COG0444 149 hELSGGMRQRVMIARALALEPKLLIADEPTTALD----VtiqaQILNLLKDLQRELGLAILFITHDLGVVAEIADRVAVM 224
|
250
....*....|....*..
gi 831463781 210 KDGAVVCEGDVSSIMRD 226
Cdd:COG0444 225 YAGRIVEEGPVEELFEN 241
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
5-233 |
6.20e-26 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 101.51 E-value: 6.20e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 5 KQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAKK-ISILKQS 83
Cdd:PRK10895 7 KNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRgIGYLPQE 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 84 NHIAARLTVHE-LVSFGRFpysRGRLTRQDR-DYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYIFLDE 161
Cdd:PRK10895 87 ASIFRRLSVYDnLMAVLQI---RDDLSAEQReDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDE 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 831463781 162 PLNNLDMKHAVQMMKVLRKLVDElGKTIVMVMHDI--NFASCYSDYMVAlkDGAVVCEGDVSSIMRDEVLRGIY 233
Cdd:PRK10895 164 PFAGVDPISVIDIKRIIEHLRDS-GLGVLITDHNVreTLAVCERAYIVS--QGHLIAHGTPTEILQDEHVKRVY 234
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
1-218 |
1.41e-25 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 101.24 E-value: 1.41e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKD----------GGEIWIEGKeIARYRT 70
Cdd:PRK09984 4 IIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDksagshiellGRTVQREGR-LARDIR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 71 EELAKKISILKQSNhIAARLTVHELV---SFGRFPYSRGRL---TRQDRDYVREAIRYMELEPLQDRYMDELSGGQRQRA 144
Cdd:PRK09984 83 KSRANTGYIFQQFN-LVNRLSVLENVligALGSTPFWRTCFswfTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRV 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 831463781 145 YIAMVLAQDTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFASCYSDYMVALKDGAVVCEG 218
Cdd:PRK09984 162 AIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDG 235
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
4-219 |
1.97e-25 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 100.43 E-value: 1.97e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 4 VKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAKKISILKQS 83
Cdd:PRK10619 8 VIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 84 NHIAARLTVhelvSFGRF---------------PYSRGRLTRQDrdyVRE-AIRYMEL----EPLQDRYMDELSGGQRQR 143
Cdd:PRK10619 88 RLLRTRLTM----VFQHFnlwshmtvlenvmeaPIQVLGLSKQE---ARErAVKYLAKvgidERAQGKYPVHLSGGQQQR 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 831463781 144 AYIAMVLAQDTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDElGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGD 219
Cdd:PRK10619 161 VSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGA 235
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
4-195 |
2.04e-25 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 103.99 E-value: 2.04e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 4 VKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEiaryrteelakKISILKQS 83
Cdd:COG0488 1 LENLSKSFGGRPLLDDVSLSINPGDRIGLVGRNGAGKSTLLKILAGELEPDSGEVSIPKGL-----------RIGYLPQE 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 84 NHIAARLTVHELVSFGRFPYSR-----GRLTRQDRDYVREAIRYMEL--------------------------EPLQDRY 132
Cdd:COG0488 70 PPLDDDLTVLDTVLDGDAELRAleaelEELEAKLAEPDEDLERLAELqeefealggweaearaeeilsglgfpEEDLDRP 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 831463781 133 MDELSGGQRQRAYIAMVLAQDTDYIFLDEPLNNLDmkhaVQMMKVLRKLVDELGKTIVMVMHD 195
Cdd:COG0488 150 VSELSGGWRRRVALARALLSEPDLLLLDEPTNHLD----LESIEWLEEFLKNYPGTVLVVSHD 208
|
|
| LolD_lipo_ex |
TIGR02211 |
lipoprotein releasing system, ATP-binding protein; This model represents LolD, a member of the ... |
1-212 |
3.35e-25 |
|
lipoprotein releasing system, ATP-binding protein; This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 131266 [Multi-domain] Cd Length: 221 Bit Score: 98.96 E-value: 3.35e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRY--GGKT--VIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAK- 75
Cdd:TIGR02211 1 LLKCENLGKRYqeGKLDtrVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKl 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 76 ---KISILKQSNHIAARLTVHELVSFgrfPYSRGRLTRQD-RDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLA 151
Cdd:TIGR02211 81 rnkKLGFIYQFHHLLPDFTALENVAM---PLLIGKKSVKEaKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALV 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 831463781 152 QDTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFASCYSDYMVaLKDG 212
Cdd:TIGR02211 158 NQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLE-MKDG 217
|
|
| AppF |
COG4608 |
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ... |
18-197 |
3.53e-25 |
|
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443658 [Multi-domain] Cd Length: 329 Bit Score: 101.35 E-value: 3.53e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 18 DRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELA---KKISILKQsNHIAA---RLT 91
Cdd:COG4608 35 DGVSFDIRRGETLGLVGESGCGKSTLGRLLLRLEEPTSGEILFDGQDITGLSGRELRplrRRMQMVFQ-DPYASlnpRMT 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 92 VHELVSFGrfPYSRGRLTRQDR-DYVREAIRYMELEPLQ-DRYMDELSGGQRQRAYIAMVLAQDTDYIFLDEPLNNLDMK 169
Cdd:COG4608 114 VGDIIAEP--LRIHGLASKAERrERVAELLELVGLRPEHaDRYPHEFSGGQRQRIGIARALALNPKLIVCDEPVSALDVS 191
|
170 180
....*....|....*....|....*...
gi 831463781 170 HAVQMMKVLRKLVDELGKTIVMVMHDIN 197
Cdd:COG4608 192 IQAQVLNLLEDLQDELGLTYLFISHDLS 219
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
1-230 |
3.61e-25 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 103.18 E-value: 3.61e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIaRYRT--EELAKKIS 78
Cdd:COG3845 5 ALELRGITKRFGGVVANDDVSLTVRPGEIHALLGENGAGKSTLMKILYGLYQPDSGEILIDGKPV-RIRSprDAIALGIG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 79 ILKQSNHIAARLTVHELVSFGRFPYSRGRLtrqDRDYVREAI-----RY-MELEPlqDRYMDELSGGQRQRAYIAMVLAQ 152
Cdd:COG3845 84 MVHQHFMLVPNLTVAENIVLGLEPTKGGRL---DRKAARARIrelseRYgLDVDP--DAKVEDLSVGEQQRVEILKALYR 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 831463781 153 DTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDElGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGDVSSIMRDEVLR 230
Cdd:COG3845 159 GARILILDEPTAVLTPQEADELFEILRRLAAE-GKSIIFITHKLREVMAIADRVTVLRRGKVVGTVDTAETSEEELAE 235
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
1-227 |
4.88e-25 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 99.83 E-value: 4.88e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRYGGKT--VIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAKKIS 78
Cdd:PRK13648 7 IIVFKNVSFQYQSDAsfTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIG 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 79 ILKQS--NHIAARlTVHELVSFG----RFPYsrgrltRQDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQ 152
Cdd:PRK13648 87 IVFQNpdNQFVGS-IVKYDVAFGlenhAVPY------DEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLAL 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 831463781 153 DTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFAScYSDYMVALKDGAVVCEGDVSSIMRDE 227
Cdd:PRK13648 160 NPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAM-EADHVIVMNKGTVYKEGTPTEIFDHA 233
|
|
| HisP |
COG4598 |
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]; |
1-219 |
5.99e-25 |
|
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443652 [Multi-domain] Cd Length: 259 Bit Score: 99.10 E-value: 5.99e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAKKISIL 80
Cdd:COG4598 8 ALEVRDLHKSFGDLEVLKGVSLTARKGDVISIIGSSGSGKSTFLRCINLLETPDSGEIRVGGEEIRLKPDRDGELVPADR 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 81 KQSNHIAARL-------------TVHELVSFGrfPYsrgRLTRQDRDYVRE-AIRYME---LEPLQDRYMDELSGGQRQR 143
Cdd:COG4598 88 RQLQRIRTRLgmvfqsfnlwshmTVLENVIEA--PV---HVLGRPKAEAIErAEALLAkvgLADKRDAYPAHLSGGQQQR 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 831463781 144 AYIAMVLAQDTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDElGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGD 219
Cdd:COG4598 163 AAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMRDLAEE-GRTMLVVTHEMGFARDVSSHVVFLHQGRIEEQGP 237
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
12-194 |
7.51e-25 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 97.24 E-value: 7.51e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 12 GGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLS--MMSRLIPKDGGEIWIEGKEIARyrtEELAKKISILKQSNHIAAR 89
Cdd:cd03213 20 SGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNalAGRRTGLGVSGEVLINGRPLDK---RSFRKIIGYVPQDDILHPT 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 90 LTVhelvsfgrfpysrgrltrqdrdyvREAIRYMELeplqdryMDELSGGQRQRAYIAMVLAQDTDYIFLDEPLNNLDMK 169
Cdd:cd03213 97 LTV------------------------RETLMFAAK-------LRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSS 145
|
170 180
....*....|....*....|....*
gi 831463781 170 HAVQMMKVLRKLVDElGKTIVMVMH 194
Cdd:cd03213 146 SALQVMSLLRRLADT-GRTIICSIH 169
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
1-230 |
9.29e-25 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 100.56 E-value: 9.29e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVkQVLKRYGGKTVidRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGkeiaryrtEEL---AKKI 77
Cdd:COG4148 2 MLEV-DFRLRRGGFTL--DVDFTLPGRGVTALFGPSGSGKTTLLRAIAGLERPDSGRIRLGG--------EVLqdsARGI 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 78 SILKQSNHIA-----ARL----TVHELVSFGRfpysRGRLTRQDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAM 148
Cdd:COG4148 71 FLPPHRRRIGyvfqeARLfphlSVRGNLLYGR----KRAPRAERRISFDEVVELLGIGHLLDRRPATLSGGERQRVAIGR 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 149 VLAQDTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGDVSSIMRDEV 228
Cdd:COG4148 147 ALLSSPRLLLMDEPLAALDLARKAEILPYLERLRDELDIPILYVSHSLDEVARLADHVVLLEQGRVVASGPLAEVLSRPD 226
|
..
gi 831463781 229 LR 230
Cdd:COG4148 227 LL 228
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
9-230 |
1.38e-24 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 101.53 E-value: 1.38e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 9 KRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIaRYR--TEELAKKISILKQSNHI 86
Cdd:PRK11288 12 KTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEM-RFAstTAALAAGVAIIYQELHL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 87 AARLTVHELVSFGRFPYSRGRLTRqdRDYVREAIRY-----MELEPlqDRYMDELSGGQRQRAYIAMVLAQDTDYIFLDE 161
Cdd:PRK11288 91 VPEMTVAENLYLGQLPHKGGIVNR--RLLNYEAREQlehlgVDIDP--DTPLKYLSIGQRQMVEIAKALARNARVIAFDE 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 831463781 162 PLNNLDMKHAVQMMKVLRKLVDElGKTIVMVMH--DINFASCysDYMVALKDGAVVCE-GDVSSIMRDEVLR 230
Cdd:PRK11288 167 PTSSLSAREIEQLFRVIRELRAE-GRVILYVSHrmEEIFALC--DAITVFKDGRYVATfDDMAQVDRDQLVQ 235
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
1-195 |
1.42e-24 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 100.29 E-value: 1.42e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARyrTEELAKKISIL 80
Cdd:PRK11607 19 LLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSH--VPPYQRPINMM 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 81 KQSNHIAARLTVHELVSFGrfpYSRGRLTRQD-RDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYIFL 159
Cdd:PRK11607 97 FQSYALFPHMTVEQNIAFG---LKQDKLPKAEiASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLL 173
|
170 180 190
....*....|....*....|....*....|....*.
gi 831463781 160 DEPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHD 195
Cdd:PRK11607 174 DEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHD 209
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
1-195 |
1.74e-24 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 99.92 E-value: 1.74e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRYGGKT-VIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKeiaRYRTEELAKK-IS 78
Cdd:PRK11650 3 GLKLQAVRKSYDGKTqVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGR---VVNELEPADRdIA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 79 ILKQSNHIAARLTVHELVSFG----RFPysrgRLTRQDRdyVREAIRYMELEPLQDRYMDELSGGQRQRayIAM--VLAQ 152
Cdd:PRK11650 80 MVFQNYALYPHMSVRENMAYGlkirGMP----KAEIEER--VAEAARILELEPLLDRKPRELSGGQRQR--VAMgrAIVR 151
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 831463781 153 DTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHD 195
Cdd:PRK11650 152 EPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHD 194
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
2-229 |
2.23e-24 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 98.33 E-value: 2.23e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRY--GGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSR-LIPKDGGE--IWIEGKEIARYRTEELAKK 76
Cdd:PRK13640 6 VEFKHVSFTYpdSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGlLLPDDNPNskITVDGITLTAKTVWDIREK 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 77 ISILKQS--NHIAARlTVHELVSFGRfpYSRGRLTRQDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDT 154
Cdd:PRK13640 86 VGIVFQNpdNQFVGA-TVGDDVAFGL--ENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEP 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 831463781 155 DYIFLDEPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFAScYSDYMVALKDGAVVCEGDVSSIMRDEVL 229
Cdd:PRK13640 163 KIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEAN-MADQVLVLDDGKLLAQGSPVEIFSKVEM 236
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
1-162 |
2.65e-24 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 97.02 E-value: 2.65e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAKK-ISI 79
Cdd:COG1137 3 TLEAENLVKSYGKRTVVKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGRIFLDGEDITHLPMHKRARLgIGY 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 80 LKQSNHIAARLTVHE-LVSFGRF-PYSRGRltRQDRdyVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYI 157
Cdd:COG1137 83 LPQEASIFRKLTVEDnILAVLELrKLSKKE--REER--LEELLEEFGITHLRKSKAYSLSGGERRRVEIARALATNPKFI 158
|
....*
gi 831463781 158 FLDEP 162
Cdd:COG1137 159 LLDEP 163
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
2-212 |
2.74e-24 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 99.39 E-value: 2.74e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEElaKKISILK 81
Cdd:PRK10851 3 IEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARD--RKVGFVF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 82 QSNHIAARLTVHELVSFGR--FPysrgRLTRQDRDYVREAI----RYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTD 155
Cdd:PRK10851 81 QHYALFRHMTVFDNIAFGLtvLP----RRERPNAAAIKAKVtqllEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQ 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 831463781 156 YIFLDEPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFASCYSDYMVALKDG 212
Cdd:PRK10851 157 ILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQG 213
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
16-194 |
3.22e-24 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 96.57 E-value: 3.22e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 16 VIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDG---GEIWIEGKEIARYRTEelaKKISILKQSNHIAARLTV 92
Cdd:cd03234 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGttsGQILFNGQPRKPDQFQ---KCVAYVRQDDILLPGLTV 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 93 HELVSFgrfpYSRGRLTRQDRDYVREA------IRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYIFLDEPLNNL 166
Cdd:cd03234 99 RETLTY----TAILRLPRKSSDAIRKKrvedvlLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGL 174
|
170 180
....*....|....*....|....*...
gi 831463781 167 DMKHAVQMMKVLRKLVDElGKTIVMVMH 194
Cdd:cd03234 175 DSFTALNLVSTLSQLARR-NRIVILTIH 201
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
2-214 |
5.62e-24 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 98.56 E-value: 5.62e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKeiaRYRTEELAKK-ISIL 80
Cdd:PRK11000 4 VTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEK---RMNDVPPAERgVGMV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 81 KQSNHIAARLTVHELVSFGRFPYSRGRLTRQDRdyVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYIFLD 160
Cdd:PRK11000 81 FQSYALYPHLSVAENMSFGLKLAGAKKEEINQR--VNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLD 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 831463781 161 EPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFASCYSDYMVALKDGAV 214
Cdd:PRK11000 159 EPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRV 212
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
32-207 |
7.63e-24 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 95.94 E-value: 7.63e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 32 LIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIArYRTEELAKKISIlkqsnhiaarlTVHELVS-----FGRFPYsrg 106
Cdd:cd03237 30 ILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVS-YKPQYIKADYEG-----------TVRDLLSsitkdFYTHPY--- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 107 rltrqdrdYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDELG 186
Cdd:cd03237 95 --------FKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNE 166
|
170 180
....*....|....*....|.
gi 831463781 187 KTIVMVMHDINFASCYSDYMV 207
Cdd:cd03237 167 KTAFVVEHDIIMIDYLADRLI 187
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
2-226 |
1.16e-23 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 96.63 E-value: 1.16e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRYGGKTVIDR-----VSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEE---- 72
Cdd:PRK13634 3 ITFQKVEHRYQYKTPFERralydVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKklkp 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 73 LAKKISILKQ-SNHIAARLTVHELVSFGrfPYSRGRLTRQDRDYVREAIRYMEL-EPLQDRYMDELSGGQRQRAYIAMVL 150
Cdd:PRK13634 83 LRKKVGIVFQfPEHQLFEETVEKDICFG--PMNFGVSEEDAKQKAREMIELVGLpEELLARSPFELSGGQMRRVAIAGVL 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 831463781 151 AQDTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGDVSSIMRD 226
Cdd:PRK13634 161 AMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFAD 236
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
2-194 |
1.23e-23 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 99.08 E-value: 1.23e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRY-GGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAKKISIL 80
Cdd:COG1132 340 IEFENVSFSYpGDRPVLKDISLTIPPGETVALVGPSGSGKSTLVNLLLRFYDPTSGRILIDGVDIRDLTLESLRRQIGVV 419
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 81 KQSNHIAARlTVHELVSFGRFPYSrgrltrqdRDYVREAIRYMELEP----LQDRYmD--------ELSGGQRQRAYIAM 148
Cdd:COG1132 420 PQDTFLFSG-TIRENIRYGRPDAT--------DEEVEEAAKAAQAHEfieaLPDGY-DtvvgergvNLSGGQRQRIAIAR 489
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 831463781 149 VLAQDTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDelGKTIVMVMH 194
Cdd:COG1132 490 ALLKDPPILILDEATSALDTETEALIQEALERLMK--GRTTIVIAH 533
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
9-196 |
2.18e-23 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 94.71 E-value: 2.18e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 9 KRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGkEIARYRTEELAKKIS-ILKQSNHIA 87
Cdd:cd03267 29 RKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAG-LVPWKRRKKFLRRIGvVFGQKTQLW 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 88 ARLTVHELVSFGRFPYsrgRLT-RQDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYIFLDEPLNNL 166
Cdd:cd03267 108 WDLPVIDSFYLLAAIY---DLPpARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGL 184
|
170 180 190
....*....|....*....|....*....|..
gi 831463781 167 DM--KHAVQmmKVLRKLVDELGKTIVMVMHDI 196
Cdd:cd03267 185 DVvaQENIR--NFLKEYNRERGTTVLLTSHYM 214
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
17-212 |
3.79e-23 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 93.68 E-value: 3.79e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 17 IDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELakkisILKQSNHIAARLTVHELV 96
Cdd:TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRM-----VVFQNYSLLPWLTVRENI 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 97 SFGRFPYSRGRLTRQDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYIFLDEPLNNLDMKHAVQMMK 176
Cdd:TIGR01184 76 ALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQE 155
|
170 180 190
....*....|....*....|....*....|....*.
gi 831463781 177 VLRKLVDELGKTIVMVMHDINFASCYSDYMVALKDG 212
Cdd:TIGR01184 156 ELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNG 191
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
5-206 |
4.31e-23 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 94.36 E-value: 4.31e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 5 KQVLKRYGGKT-VIDRvsLSVPRR-KLTSLIGPNGAGKSTLLSMMS-RLIPK----DGGEIWIE------GKEIARYRTE 71
Cdd:cd03236 4 DEPVHRYGPNSfKLHR--LPVPREgQVLGLVGPNGIGKSTALKILAgKLKPNlgkfDDPPDWDEildefrGSELQNYFTK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 72 ELAKKISILKQSNHI-----AARLTVHELvsfgrfpysrgrLTRQD-RDYVREAIRYMELEPLQDRYMDELSGGQRQRAY 145
Cdd:cd03236 82 LLEGDVKVIVKPQYVdlipkAVKGKVGEL------------LKKKDeRGKLDELVDQLELRHVLDRNIDQLSGGELQRVA 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 831463781 146 IAMVLAQDTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDElGKTIVMVMHDINFASCYSDYM 206
Cdd:cd03236 150 IAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAED-DNYVLVVEHDLAVLDYLSDYI 209
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
11-215 |
7.09e-23 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 93.75 E-value: 7.09e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 11 YGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLI-----PKDGGEIWIEGKEIARYRTE--ELAKKISILKQS 83
Cdd:PRK14267 14 YGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLelneeARVEGEVRLFGRNIYSPDVDpiEVRREVGMVFQY 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 84 NHIAARLTVHELVSFG----RFPYSRGRLTRQDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYIFL 159
Cdd:PRK14267 94 PNPFPHLTIYDNVAIGvklnGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLM 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 831463781 160 DEPLNNLDMKHAVQMMKVLRKLVDELgkTIVMVMHDINFASCYSDYMVALKDGAVV 215
Cdd:PRK14267 174 DEPTANIDPVGTAKIEELLFELKKEY--TIVLVTHSPAQAARVSDYVAFLYLGKLI 227
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
11-218 |
7.40e-23 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 94.01 E-value: 7.40e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 11 YGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPK-----DGGEIWIEGKEIARYR-TEELAKKISILKQS- 83
Cdd:PRK14271 31 FAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKvsgyrYSGDVLLGGRSIFNYRdVLEFRRRVGMLFQRp 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 84 --------NHIAARLTVHELVSFGRFP-YSRGRLTRQDRdyvreairymeLEPLQDRYMD---ELSGGQRQRAYIAMVLA 151
Cdd:PRK14271 111 npfpmsimDNVLAGVRAHKLVPRKEFRgVAQARLTEVGL-----------WDAVKDRLSDspfRLSGGQQQLLCLARTLA 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 831463781 152 QDTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDELgkTIVMVMHDINFASCYSDYMVALKDGAVVCEG 218
Cdd:PRK14271 180 VNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRL--TVIIVTHNLAQAARISDRAALFFDGRLVEEG 244
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
5-226 |
9.59e-23 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 95.49 E-value: 9.59e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 5 KQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELA----KKISIL 80
Cdd:PRK10070 32 EQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELRevrrKKIAMV 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 81 KQSNHIAARLTVHELVSFGRfpYSRGRLTRQDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYIFLD 160
Cdd:PRK10070 112 FQSFALMPHMTVLDNTAFGM--ELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMD 189
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 831463781 161 EPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGDVSSIMRD 226
Cdd:PRK10070 190 EAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNN 255
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
2-221 |
9.78e-23 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 93.15 E-value: 9.78e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEG------KEIARYRTEELAK 75
Cdd:COG4161 3 IQLKNINCFYGSHQALFDINLECPSGETLVLLGPSGAGKSSLLRVLNLLETPDSGQLNIAGhqfdfsQKPSEKAIRLLRQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 76 KISILKQSNHIAARLTVHE-LVSFgrfPYSRGRLTRQD-RDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQD 153
Cdd:COG4161 83 KVGMVFQQYNLWPHLTVMEnLIEA---PCKVLGLSKEQaREKAMKLLARLRLTDKADRFPLHLSGGQQQRVAIARALMME 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 831463781 154 TDYIFLDEPLNNLDMKHAVQMMKVLRKLvDELGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGDVS 221
Cdd:COG4161 160 PQVLLFDEPTAALDPEITAQVVEIIREL-SQTGITQVIVTHEVEFARKVASQVVYMEKGRIIEQGDAS 226
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
9-226 |
1.76e-22 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 95.52 E-value: 1.76e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 9 KRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPkDGGEIWIEGKEIARYRTEELA---KKISILKQ--- 82
Cdd:COG4172 294 RTVGHVKAVDGVSLTLRRGETLGLVGESGSGKSTLGLALLRLIP-SEGEIRFDGQDLDGLSRRALRplrRRMQVVFQdpf 372
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 83 -SnhIAARLTVHELVSFG---RFPysrgRLTRQDRD-YVREAIRYMELEP-LQDRYMDELSGGQRQRAYIAMVLAQDTDY 156
Cdd:COG4172 373 gS--LSPRMTVGQIIAEGlrvHGP----GLSAAERRaRVAEALEEVGLDPaARHRYPHEFSGGQRQRIAIARALILEPKL 446
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 157 IFLDEPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGDVSSIMRD 226
Cdd:COG4172 447 LVLDEPTSALDVSVQAQILDLLRDLQREHGLAYLFISHDLAVVRALAHRVMVMKDGKVVEQGPTEQVFDA 516
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
1-230 |
3.44e-22 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 94.85 E-value: 3.44e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYrTEELAKK--IS 78
Cdd:PRK09700 5 YISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKL-DHKLAAQlgIG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 79 ILKQSNHIAARLTVHELVSFGRFPysrgrlTRQ-------DRDYVREAIRYMELEPLQDRYMDE----LSGGQRQRAYIA 147
Cdd:PRK09700 84 IIYQELSVIDELTVLENLYIGRHL------TKKvcgvniiDWREMRVRAAMMLLRVGLKVDLDEkvanLSISHKQMLEIA 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 148 MVLAQDTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDElGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGDVSSIMRDE 227
Cdd:PRK09700 158 KTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKE-GTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSNDD 236
|
...
gi 831463781 228 VLR 230
Cdd:PRK09700 237 IVR 239
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
1-233 |
4.63e-22 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 91.09 E-value: 4.63e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAKK-ISI 79
Cdd:PRK11614 5 MLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREaVAI 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 80 LKQSNHIAARLTVHELVSFGRFPYSRgrltrqdRDYVREAIRYMELEP-LQDRYMDE---LSGGQRQRAYIAMVLAQDTD 155
Cdd:PRK11614 85 VPEGRRVFSRMTVEENLAMGGFFAER-------DQFQERIKWVYELFPrLHERRIQRagtMSGGEQQMLAIGRALMSQPR 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 831463781 156 YIFLDEPLNNLDMKHAVQMMKVLRKLVDElGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGDVSSIMRDEVLRGIY 233
Cdd:PRK11614 158 LLLLDEPSLGLAPIIIQQIFDTIEQLREQ-GMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLANEAVRSAY 234
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
2-195 |
7.22e-22 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 93.85 E-value: 7.22e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIeGKEIaryrteelakKISILK 81
Cdd:TIGR03719 323 IEAENLTKAFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIEI-GETV----------KLAYVD 391
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 82 QS-NHIAARLTVHELVSFGRFPYSRGRLTRQDRDYVReaiRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYIFLD 160
Cdd:TIGR03719 392 QSrDALDPNKTVWEEISGGLDIIKLGKREIPSRAYVG---RFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLD 468
|
170 180 190
....*....|....*....|....*....|....*
gi 831463781 161 EPLNNLDmkhaVQMMKVLRKLVDELGKTIVMVMHD 195
Cdd:TIGR03719 469 EPTNDLD----VETLRALEEALLNFAGCAVVISHD 499
|
|
| nickel_nikE |
TIGR02769 |
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a ... |
1-221 |
7.83e-22 |
|
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131816 [Multi-domain] Cd Length: 265 Bit Score: 91.02 E-value: 7.83e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRY---------GGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTE 71
Cdd:TIGR02769 2 LLEVRDVTHTYrtgglfgakQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 72 E---LAKKISILKQSNHIA--ARLTVHELVSFGRFPYSRGRLTRQDRDyVREAIRYMELEP-LQDRYMDELSGGQRQRAY 145
Cdd:TIGR02769 82 QrraFRRDVQLVFQDSPSAvnPRMTVRQIIGEPLRHLTSLDESEQKAR-IAELLDMVGLRSeDADKLPRQLSGGQLQRIN 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 831463781 146 IAMVLAQDTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGDVS 221
Cdd:TIGR02769 161 IARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVA 236
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
1-221 |
8.52e-22 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 93.59 E-value: 8.52e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWI-EGKEIARY--RTEELAKKI 77
Cdd:COG0488 315 VLELEGLSKSYGDKTLLDDLSLRIDRGDRIGLIGPNGAGKSTLLKLLAGELEPDSGTVKLgETVKIGYFdqHQEELDPDK 394
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 78 SILKQSNHIAARLTVHELVSF-GRFpysrgrLTRQDRdyvreairymeleplQDRYMDELSGGQRQRAYIAMVLAQDTDY 156
Cdd:COG0488 395 TVLDELRDGAPGGTEQEVRGYlGRF------LFSGDD---------------AFKPVGVLSGGEKARLALAKLLLSPPNV 453
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 831463781 157 IFLDEPLNNLDMkhavQMMKVLRKLVDELGKTIVMVMHDINFASCYSDYMVALKDGAVV-CEGDVS 221
Cdd:COG0488 454 LLLDEPTNHLDI----ETLEALEEALDDFPGTVLLVSHDRYFLDRVATRILEFEDGGVReYPGGYD 515
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
2-218 |
9.76e-22 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 89.98 E-value: 9.76e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRY-GGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAKKISIL 80
Cdd:cd03254 3 IEFENVNFSYdEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 81 KQSNHIAARlTVHELVSFgrfpysrGRLTRQDRDYVREAIR------YMELEPLQDRYMDE----LSGGQRQRAYIAMVL 150
Cdd:cd03254 83 LQDTFLFSG-TIMENIRL-------GRPNATDEEVIEAAKEagahdfIMKLPNGYDTVLGEnggnLSQGERQLLAIARAM 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 831463781 151 AQDTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDelGKTIVMVMHDINFAScYSDYMVALKDGAVVCEG 218
Cdd:cd03254 155 LRDPKILILDEATSNIDTETEKLIQEALEKLMK--GRTSIIIAHRLSTIK-NADKILVLDDGKIIEEG 219
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
2-233 |
1.71e-21 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 89.60 E-value: 1.71e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRYGGKT--VIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAKKISI 79
Cdd:cd03251 1 VEFKNVTFRYPGDGppVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 80 LKQSNHIAARlTVHELVSFGRFpysrgrltRQDRDYVREAIR-------YMELEPLQDRYMDE----LSGGQRQRAYIAM 148
Cdd:cd03251 81 VSQDVFLFND-TVAENIAYGRP--------GATREEVEEAARaanahefIMELPEGYDTVIGErgvkLSGGQRQRIAIAR 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 149 VLAQDTDYIFLDEPLNNLDM--KHAVQmmKVLRKLVDelGKTIVMVMH---DINFAscysDYMVALKDGAVVCEGDVSSI 223
Cdd:cd03251 152 ALLKDPPILILDEATSALDTesERLVQ--AALERLMK--NRTTFVIAHrlsTIENA----DRIVVLEDGKIVERGTHEEL 223
|
250
....*....|
gi 831463781 224 MRDEvlrGIY 233
Cdd:cd03251 224 LAQG---GVY 230
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
2-223 |
2.65e-21 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 89.33 E-value: 2.65e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSR---LIP--KDGGEIWIEGKEI--ARYRTEELA 74
Cdd:COG1117 12 IEVRNLNVYYGDKQALKDINLDIPENKVTALIGPSGCGKSTLLRCLNRmndLIPgaRVEGEILLDGEDIydPDVDVVELR 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 75 KKISILKQ-SNHIAarLTVHELVSFGrfPYSRGRLTRQDRDY-VREAIRYMEL-EPLQDRYMD---ELSGGQRQRAYIAM 148
Cdd:COG1117 92 RRVGMVFQkPNPFP--KSIYDNVAYG--LRLHGIKSKSELDEiVEESLRKAALwDEVKDRLKKsalGLSGGQQQRLCIAR 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 149 VLAQDTDYIFLDEPLNNLD----MKhavqmmkvLRKLVDELGK--TIVMVMHDINFASCYSDYMVALKDGAVVCEGDVSS 222
Cdd:COG1117 168 ALAVEPEVLLMDEPTSALDpistAK--------IEELILELKKdyTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTEQ 239
|
.
gi 831463781 223 I 223
Cdd:COG1117 240 I 240
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
1-223 |
2.96e-21 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 89.04 E-value: 2.96e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRT--------EE 72
Cdd:PRK11264 3 AIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSlsqqkgliRQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 73 LAKKISILKQSNHIAARLTVHELVSFGRFpYSRGRLTRQDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQ 152
Cdd:PRK11264 83 LRQHVGFVFQNFNLFPHRTVLENIIEGPV-IVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAM 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 831463781 153 DTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDElGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGDVSSI 223
Cdd:PRK11264 162 RPEVILFDEPTSALDPELVGEVLNTIRQLAQE-KRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKAL 231
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
1-223 |
3.03e-21 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 90.63 E-value: 3.03e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRYGGK----TVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAK- 75
Cdd:PRK11153 1 MIELKNISKVFPQGgrtiHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKa 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 76 --KISILKQS-NHIAARlTVHELVSfgrFPYSRGRLTRQD-RDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLA 151
Cdd:PRK11153 81 rrQIGMIFQHfNLLSSR-TVFDNVA---LPLELAGTPKAEiKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALA 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 831463781 152 QDTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGDVSSI 223
Cdd:PRK11153 157 SNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEV 228
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
1-214 |
4.46e-21 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 89.41 E-value: 4.46e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRYGG---KTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAKKI 77
Cdd:PRK13650 4 IIEVKNLTFKYKEdqeKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 78 SILKQS--NHIAARlTVHELVSFGRfpYSRGRLTRQDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTD 155
Cdd:PRK13650 84 GMVFQNpdNQFVGA-TVEDDVAFGL--ENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPK 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 831463781 156 YIFLDEPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFAScYSDYMVALKDGAV 214
Cdd:PRK13650 161 IIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA-LSDRVLVMKNGQV 218
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
17-226 |
6.54e-21 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 89.07 E-value: 6.54e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 17 IDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIArYRTEE-----LAKKISILKQSNHiaARL- 90
Cdd:PRK13646 23 IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITIT-HKTKDkyirpVRKRIGMVFQFPE--SQLf 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 91 --TVHELVSFGrfPYSRGRLTRQDRDYVREAI-------RYMELEPLQdrymdeLSGGQRQRAYIAMVLAQDTDYIFLDE 161
Cdd:PRK13646 100 edTVEREIIFG--PKNFKMNLDEVKNYAHRLLmdlgfsrDVMSQSPFQ------MSGGQMRKIAIVSILAMNPDIIVLDE 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 831463781 162 PLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGDVSSIMRD 226
Cdd:PRK13646 172 PTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKD 236
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
2-218 |
9.80e-21 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 86.21 E-value: 9.80e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRYGG--KTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRtEELAKKISI 79
Cdd:cd03247 1 LSINNVSFSYPEqeQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLE-KALSSLISV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 80 LKQSNHI-AARLtvhelvsfgrfpysRGRLTRQdrdyvreairymeleplqdrymdeLSGGQRQRAYIAMVLAQDTDYIF 158
Cdd:cd03247 80 LNQRPYLfDTTL--------------RNNLGRR------------------------FSGGERQRLALARILLQDAPIVL 121
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 831463781 159 LDEPLNNLDMKHAVQmmkVLRKLVDEL-GKTIVMVMHDINFAScYSDYMVALKDGAVVCEG 218
Cdd:cd03247 122 LDEPTVGLDPITERQ---LLSLIFEVLkDKTLIWITHHLTGIE-HMDKILFLENGKIIMQG 178
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
3-194 |
1.40e-20 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 86.39 E-value: 1.40e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 3 EVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRtEELAKKISILKQ 82
Cdd:cd03231 2 EADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLLYLGH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 83 SNHIAARLTVHELVSFGRfpysrgrlTRQDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYIFLDEP 162
Cdd:cd03231 81 APGIKTTLSVLENLRFWH--------ADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEP 152
|
170 180 190
....*....|....*....|....*....|..
gi 831463781 163 LNNLDMKHAVQMMKVLRKLVdELGKTIVMVMH 194
Cdd:cd03231 153 TTALDKAGVARFAEAMAGHC-ARGGMVVLTTH 183
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
14-232 |
1.45e-20 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 88.18 E-value: 1.45e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 14 KTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIA--RYRTEELAKKISILKQ-SNHIAARL 90
Cdd:PRK13637 20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITdkKVKLSDIRKKVGLVFQyPEYQLFEE 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 91 TVHELVSFGrfPYSRGRLTRQDRDYVREAIRYMEL--EPLQDRYMDELSGGQRQRAYIAMVLAQDTDYIFLDEPLNNLDM 168
Cdd:PRK13637 100 TIEKDIAFG--PINLGLSEEEIENRVKRAMNIVGLdyEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDP 177
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 831463781 169 KHAVQMMKVLRKLVDELGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGDVSSIMRD-EVLRGI 232
Cdd:PRK13637 178 KGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFKEvETLESI 242
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
1-174 |
2.00e-20 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 86.08 E-value: 2.00e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIaryRTEELAKKISIL 80
Cdd:PRK13539 2 MLEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDI---DDPDVAEACHYL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 81 KQSNHIAARLTVHELVSFGRfpysrgRLTRQDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYIFLD 160
Cdd:PRK13539 79 GHRNAMKPALTVAENLEFWA------AFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILD 152
|
170
....*....|....
gi 831463781 161 EPLNNLDmKHAVQM 174
Cdd:PRK13539 153 EPTAALD-AAAVAL 165
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
2-198 |
6.95e-20 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 82.88 E-value: 6.95e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRYGGKTVIDRVSLSV-PRRKLtSLIGPNGAGKSTLLSMMSRLIPKDGGEIwiegkeiaryrteelakkisil 80
Cdd:cd03221 1 IELENLSKTYGGKLLLKDISLTInPGDRI-GLVGRNGAGKSTLLKLIAGELEPDEGIV---------------------- 57
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 81 kqsnhiaarlTVHELVSFGrfpysrgrltrqdrdyvreairymeleplqdrYMDELSGGQRQRAYIAMVLAQDTDYIFLD 160
Cdd:cd03221 58 ----------TWGSTVKIG--------------------------------YFEQLSGGEKMRLALAKLLLENPNLLLLD 95
|
170 180 190
....*....|....*....|....*....|....*...
gi 831463781 161 EPLNNLDMKHAVQmmkvLRKLVDELGKTIVMVMHDINF 198
Cdd:cd03221 96 EPTNHLDLESIEA----LEEALKEYPGTVILVSHDRYF 129
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
17-215 |
8.40e-20 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 86.04 E-value: 8.40e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 17 IDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEI----ARYRTEELAKKISILKQSNHiaARL-- 90
Cdd:PRK13641 23 LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHItpetGNKNLKKLRKKVSLVFQFPE--AQLfe 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 91 -TVHELVSFGrfPYSRGRLTRQDRDyvrEAIRYMELEPLQDRYMD----ELSGGQRQRAYIAMVLAQDTDYIFLDEPLNN 165
Cdd:PRK13641 101 nTVLKDVEFG--PKNFGFSEDEAKE---KALKWLKKVGLSEDLISkspfELSGGQMRRVAIAGVMAYEPEILCLDEPAAG 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 831463781 166 LDMKHAVQMMKVLRKLVDElGKTIVMVMHDINFASCYSDYMVALKDGAVV 215
Cdd:PRK13641 176 LDPEGRKEMMQLFKDYQKA-GHTVILVTHNMDDVAEYADDVLVLEHGKLI 224
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
11-226 |
1.15e-19 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 85.56 E-value: 1.15e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 11 YGGKTVIDrVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLI-PKDG----GEIWI----EGKEIARYRteelaKKISILK 81
Cdd:PRK13643 17 FASRALFD-IDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLqPTEGkvtvGDIVVsstsKQKEIKPVR-----KKVGVVF 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 82 Q-SNHIAARLTVHELVSFGrfPYSRGrLTRQDRDYVreAIRYMELEPLQDRYMD----ELSGGQRQRAYIAMVLAQDTDY 156
Cdd:PRK13643 91 QfPESQLFEETVLKDVAFG--PQNFG-IPKEKAEKI--AAEKLEMVGLADEFWEkspfELSGGQMRRVAIAGILAMEPEV 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 157 IFLDEPLNNLDMKHAVQMMKVLRKlVDELGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGDVSSIMRD 226
Cdd:PRK13643 166 LVLDEPTAGLDPKARIEMMQLFES-IHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQE 234
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
1-237 |
1.18e-19 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 85.52 E-value: 1.18e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRYGG------KTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYR-TEEL 73
Cdd:PRK13633 4 MIKCKNVSYKYESneesteKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEEnLWDI 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 74 AKKISILKQS--NHIAARLtVHELVSFGrfPYSRGRLTRQDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLA 151
Cdd:PRK13633 84 RNKAGMVFQNpdNQIVATI-VEEDVAFG--PENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 152 QDTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFAScYSDYMVALKDGAVVCEGDVSSIMRD-EVLR 230
Cdd:PRK13633 161 MRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAV-EADRIIVMDSGKVVMEGTPKEIFKEvEMMK 239
|
....*..
gi 831463781 231 GIyDLDV 237
Cdd:PRK13633 240 KI-GLDV 245
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
11-229 |
1.46e-19 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 85.44 E-value: 1.46e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 11 YGGKT-----VIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWI----------EGKEIARYRteelaK 75
Cdd:PRK13645 16 YAKKTpfefkALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVgdyaipanlkKIKEVKRLR-----K 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 76 KISILKQ-SNHIAARLTVHELVSFGrfPYSRGRLTRQDRDYVREAIRYMEL-EPLQDRYMDELSGGQRQRAYIAMVLAQD 153
Cdd:PRK13645 91 EIGLVFQfPEYQLFQETIEKDIAFG--PVNLGENKQEAYKKVPELLKLVQLpEDYVKRSPFELSGGQKRRVALAGIIAMD 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 831463781 154 TDYIFLDEPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGDVSSIMRDEVL 229
Cdd:PRK13645 169 GNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFSNQEL 244
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
11-223 |
1.65e-19 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 84.44 E-value: 1.65e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 11 YGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSR---LIPK--DGGEIWIEGKEIARYRTE--ELAKKIS-ILKQ 82
Cdd:PRK14239 15 YNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRmndLNPEvtITGSIVYNGHNIYSPRTDtvDLRKEIGmVFQQ 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 83 SNHIAarLTVHELVSFG-RFpysRGRLTRQDRDY-VREAIRYMEL-EPLQDRYMDE---LSGGQRQRAYIAMVLAQDTDY 156
Cdd:PRK14239 95 PNPFP--MSIYENVVYGlRL---KGIKDKQVLDEaVEKSLKGASIwDEVKDRLHDSalgLSGGQQQRVCIARVLATSPKI 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 831463781 157 IFLDEPLNNLDMKHAVQMMKVLRKLVDELgkTIVMVMHDINFASCYSDYMVALKDGAVVCEGDVSSI 223
Cdd:PRK14239 170 ILLDEPTSALDPISAGKIEETLLGLKDDY--TMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQM 234
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
12-223 |
1.65e-19 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 87.05 E-value: 1.65e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 12 GGKTVIDRVSLSVPRRKLTSLIGPNGAGKS-TLLSMMsRLIPKD----GGEIWIEGKEIARYRTEELAK----KIS---- 78
Cdd:COG4172 21 GTVEAVKGVSFDIAAGETLALVGESGSGKSvTALSIL-RLLPDPaahpSGSILFDGQDLLGLSERELRRirgnRIAmifq 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 79 -----------ILKQsnhIAARLTVHElvsfgrfpysrgRLTRQDRDyvREAIRYMEL----EPLQ--DRYMDELSGGQR 141
Cdd:COG4172 100 epmtslnplhtIGKQ---IAEVLRLHR------------GLSGAAAR--ARALELLERvgipDPERrlDAYPHQLSGGQR 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 142 QRAYIAMVLAQDTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGDVS 221
Cdd:COG4172 163 QRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKDLQRELGMALLLITHDLGVVRRFADRVAVMRQGEIVEQGPTA 242
|
..
gi 831463781 222 SI 223
Cdd:COG4172 243 EL 244
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
2-222 |
1.80e-19 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 84.30 E-value: 1.80e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEG-----------KEIAryrt 70
Cdd:PRK11124 3 IQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGnhfdfsktpsdKAIR---- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 71 eELAKKISILKQSNHIAARLTVHE-LVsfgRFPYSRGRLTRQD-RDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAM 148
Cdd:PRK11124 79 -ELRRNVGMVFQQYNLWPHLTVQQnLI---EAPCRVLGLSKDQaLARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIAR 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 831463781 149 VLAQDTDYIFLDEPLNNLDMKHAVQMMKVLRKLvDELGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGDVSS 222
Cdd:PRK11124 155 ALMMEPQVLLFDEPTAALDPEITAQIVSIIREL-AETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC 227
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
4-214 |
2.15e-19 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 84.34 E-value: 2.15e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 4 VKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEelakkISILKQS 83
Cdd:PRK11247 15 LNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEARED-----TRLMFQD 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 84 nhiaARL----TVHELVSFGrfpysrgrLTRQDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYIFL 159
Cdd:PRK11247 90 ----ARLlpwkKVIDNVGLG--------LKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLL 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 831463781 160 DEPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFASCYSDYMVALKDGAV 214
Cdd:PRK11247 158 DEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
3-214 |
2.33e-19 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 82.26 E-value: 2.33e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 3 EVKQVLKRYGG--KTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAKKISIL 80
Cdd:cd03246 2 EVENVSFRYPGaePPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 81 KQSNhiaarltvhELvsfgrFPYSrgrltrqdrdyVREAIrymeleplqdrymdeLSGGQRQRAYIAMVLAQDTDYIFLD 160
Cdd:cd03246 82 PQDD---------EL-----FSGS-----------IAENI---------------LSGGQRQRLGLARALYGNPRILVLD 121
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 831463781 161 EPLNNLDMK------HAVQMMKVlrklvdeLGKTIVMVMHDIN-FASCysDYMVALKDGAV 214
Cdd:cd03246 122 EPNSHLDVEgeralnQAIAALKA-------AGATRIVIAHRPEtLASA--DRILVLEDGRV 173
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
21-196 |
2.53e-19 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 86.76 E-value: 2.53e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 21 SLSVPRR-KLTSLIGPNGAGKSTLLSMMS-RLIP----KDGGEIWIE------GKEIARYRTEELAKKISILKQSNHI-- 86
Cdd:COG1245 92 GLPVPKKgKVTGILGPNGIGKSTALKILSgELKPnlgdYDEEPSWDEvlkrfrGTELQDYFKKLANGEIKVAHKPQYVdl 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 87 ---AARLTVHELvsfgrfpysrgrLTRQD-RDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYIFLDEP 162
Cdd:COG1245 172 ipkVFKGTVREL------------LEKVDeRGKLDELAEKLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEP 239
|
170 180 190
....*....|....*....|....*....|....
gi 831463781 163 LNNLDMKHAVQMMKVLRKLVDElGKTIVMVMHDI 196
Cdd:COG1245 240 SSYLDIYQRLNVARLIRELAEE-GKYVLVVEHDL 272
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
7-221 |
5.08e-19 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 83.58 E-value: 5.08e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 7 VLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIwiegkeiaRYRTEELAKkisiLKQSNHI 86
Cdd:PRK10419 18 LSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNV--------SWRGEPLAK----LNRAQRK 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 87 AARLTVhELV---SFGRF-PYSRGR---------LTRQDRD----YVREAIRYMELEP-LQDRYMDELSGGQRQRAYIAM 148
Cdd:PRK10419 86 AFRRDI-QMVfqdSISAVnPRKTVReiireplrhLLSLDKAerlaRASEMLRAVDLDDsVLDKRPPQLSGGQLQRVCLAR 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 831463781 149 VLAQDTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGDVS 221
Cdd:PRK10419 165 ALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVG 237
|
|
| MsbA_lipidA |
TIGR02203 |
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ... |
2-218 |
5.15e-19 |
|
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 85.54 E-value: 5.15e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRYGGKT--VIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAKKISI 79
Cdd:TIGR02203 331 VEFRNVTFRYPGRDrpALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVAL 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 80 LKQSNHIAARlTVHELVSFGRfpysrgrlTRQ-DRDYVREAIRYMELEPLQDRyMDE------------LSGGQRQRAYI 146
Cdd:TIGR02203 411 VSQDVVLFND-TIANNIAYGR--------TEQaDRAEIERALAAAYAQDFVDK-LPLgldtpigengvlLSGGQRQRLAI 480
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 831463781 147 AMVLAQDTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDelGKTIVMVMHDINFAScYSDYMVALKDGAVVCEG 218
Cdd:TIGR02203 481 ARALLKDAPILILDEATSALDNESERLVQAALERLMQ--GRTTLVIAHRLSTIE-KADRIVVMDDGRIVERG 549
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
33-207 |
5.16e-19 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 85.61 E-value: 5.16e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 33 IGPNGAGKSTLLSMMSRLIPKDGGEIwiegkeiaryrteELAKKISILKQSNHIAARLTVHEL---VSFGRFPYSRgrlt 109
Cdd:COG1245 372 VGPNGIGKTTFAKILAGVLKPDEGEV-------------DEDLKISYKPQYISPDYDGTVEEFlrsANTDDFGSSY---- 434
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 110 rqdrdYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDELGKTI 189
Cdd:COG1245 435 -----YKTEIIKPLGLEKLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRFAENRGKTA 509
|
170
....*....|....*....
gi 831463781 190 VMVMHDINFASCYSD-YMV 207
Cdd:COG1245 510 MVVDHDIYLIDYISDrLMV 528
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
15-227 |
6.11e-19 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 84.13 E-value: 6.11e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 15 TVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEG------------------KEIARYRteELAKK 76
Cdd:PRK13631 40 VALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDiyigdkknnhelitnpysKKIKNFK--ELRRR 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 77 ISILKQ-SNHIAARLTVHELVSFGrfPYSRGRLTRQDRdyvREAIRYMELEPLQDRYMD----ELSGGQRQRAYIAMVLA 151
Cdd:PRK13631 118 VSMVFQfPEYQLFKDTIEKDIMFG--PVALGVKKSEAK---KLAKFYLNKMGLDDSYLErspfGLSGGQKRRVAIAGILA 192
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 831463781 152 QDTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDElGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGDVSSIMRDE 227
Cdd:PRK13631 193 IQPEILIFDEPTAGLDPKGEHEMMQLILDAKAN-NKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQ 267
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
16-214 |
7.49e-19 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 82.13 E-value: 7.49e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 16 VIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAKKISILKQSNHIAARlTVHEL 95
Cdd:cd03248 29 VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFAR-SLQDN 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 96 VSFGRFPYSRGRLTR-QDRDYVREAIRYMELEPLQDryMDE----LSGGQRQRAYIAMVLAQDTDYIFLDEPLNNLDMKH 170
Cdd:cd03248 108 IAYGLQSCSFECVKEaAQKAHAHSFISELASGYDTE--VGEkgsqLSGGQKQRVAIARALIRNPQVLILDEATSALDAES 185
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 831463781 171 AVQMMKVLRKlvDELGKTIVMVMHDINFAScYSDYMVALKDGAV 214
Cdd:cd03248 186 EQQVQQALYD--WPERRTVLVIAHRLSTVE-RADQILVLDGGRI 226
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
20-226 |
1.24e-18 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 82.48 E-value: 1.24e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 20 VSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEI-ARYRTEELA---KKISILKQ--SNHIAARlTVH 93
Cdd:PRK13649 26 VNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLItSTSKNKDIKqirKKVGLVFQfpESQLFEE-TVL 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 94 ELVSFGrfPYSRGRLTRQDRDYVREAIRYMEL-EPLQDRYMDELSGGQRQRAYIAMVLAQDTDYIFLDEPLNNLDMKHAV 172
Cdd:PRK13649 105 KDVAFG--PQNFGVSQEEAEALAREKLALVGIsESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRK 182
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 831463781 173 QMMKVLRKLvDELGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGDVSSIMRD 226
Cdd:PRK13649 183 ELMTLFKKL-HQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQD 235
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
14-223 |
1.27e-18 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 82.40 E-value: 1.27e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 14 KTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIP------KDGGEIWIEGKEIARYRTEELAKKISILKQSNHIA 87
Cdd:PRK14246 23 KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEiydskiKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPF 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 88 ARLTVHELVSfgrFPY-SRG-RLTRQDRDYVREAIRYMEL-EPLQDRY---MDELSGGQRQRAYIAMVLAQDTDYIFLDE 161
Cdd:PRK14246 103 PHLSIYDNIA---YPLkSHGiKEKREIKKIVEECLRKVGLwKEVYDRLnspASQLSGGQQQRLTIARALALKPKVLLMDE 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 831463781 162 PLNNLDMKHAVQMMKVLRKLVDELgkTIVMVMHDINFASCYSDYMVALKDGAVVCEGDVSSI 223
Cdd:PRK14246 180 PTSMIDIVNSQAIEKLITELKNEI--AIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEI 239
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
2-246 |
1.90e-18 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 84.29 E-value: 1.90e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRY--GGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIaRYRTEELAKKISI 79
Cdd:TIGR01257 929 VCVKNLVKIFepSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDI-ETNLDAVRQSLGM 1007
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 80 LKQSNHIAARLTVHELVSFgrFPYSRGRLTRQDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYIFL 159
Cdd:TIGR01257 1008 CPQHNILFHHLTVAEHILF--YAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVL 1085
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 160 DEPLNNLDMKHAVQMMKVLRKLvdELGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGdVSSIMRDEVLRGIYDLDVR- 238
Cdd:TIGR01257 1086 DEPTSGVDPYSRRSIWDLLLKY--RSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSG-TPLFLKNCFGTGFYLTLVRk 1162
|
....*...
gi 831463781 239 VQTIENRR 246
Cdd:TIGR01257 1163 MKNIQSQR 1170
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
1-226 |
1.95e-18 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 84.08 E-value: 1.95e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRY-----GGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIE-GKE---------- 64
Cdd:TIGR03269 279 IIKVRNVSKRYisvdrGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRvGDEwvdmtkpgpd 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 65 ----IARY-------------RT--EELAKKISiLKQSNHIAARLTVHELVSFGrFpysrgrltrqDRDYVREAIrymel 125
Cdd:TIGR03269 359 grgrAKRYigilhqeydlyphRTvlDNLTEAIG-LELPDELARMKAVITLKMVG-F----------DEEKAEEIL----- 421
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 126 eplqDRYMDELSGGQRQRAYIAMVLAQDTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFASCYSDY 205
Cdd:TIGR03269 422 ----DKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDR 497
|
250 260
....*....|....*....|.
gi 831463781 206 MVALKDGAVVCEGDVSSIMRD 226
Cdd:TIGR03269 498 AALMRDGKIVKIGDPEEIVEE 518
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
10-219 |
2.59e-18 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 81.59 E-value: 2.59e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 10 RYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLI-PKDGGEIWiEGKEIARYRTEELAKK---ISILKQSNH 85
Cdd:PRK13638 10 RYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLrPQKGAVLW-QGKPLDYSKRGLLALRqqvATVFQDPEQ 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 86 IAARLTVHELVSFG--RFPYSRGRLTRQdrdyVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYIFLDEPL 163
Cdd:PRK13638 89 QIFYTDIDSDIAFSlrNLGVPEAEITRR----VDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPT 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 831463781 164 NNLDMKHAVQMMKVLRKLVDElGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGD 219
Cdd:PRK13638 165 AGLDPAGRTQMIAIIRRIVAQ-GNHVIISSHDIDLIYEISDAVYVLRQGQILTHGA 219
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
1-212 |
2.94e-18 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 80.59 E-value: 2.94e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRYG-GK---TVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARY----RTEE 72
Cdd:PRK10584 6 IVEVHHLKKSVGqGEhelSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMdeeaRAKL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 73 LAKKISILKQSNHIAARLTVHELVSFGRFpySRGRLTRQDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQ 152
Cdd:PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPAL--LRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNG 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 831463781 153 DTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFAS-CysDYMVALKDG 212
Cdd:PRK10584 164 RPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAArC--DRRLRLVNG 222
|
|
| bacteriocin_ABC |
TIGR01193 |
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The ... |
2-218 |
3.53e-18 |
|
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]
Pssm-ID: 130261 [Multi-domain] Cd Length: 708 Bit Score: 83.25 E-value: 3.53e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRYG-GKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAKKISIL 80
Cdd:TIGR01193 474 IVINDVSYSYGyGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYL 553
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 81 KQSNHIAARlTVHELVSFGrfpySRGRLTRQDrdyVREAIRYMEL----EPLQDRYMDEL-------SGGQRQRAYIAMV 149
Cdd:TIGR01193 554 PQEPYIFSG-SILENLLLG----AKENVSQDE---IWAACEIAEIkddiENMPLGYQTELseegssiSGGQKQRIALARA 625
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 831463781 150 LAQDTDYIFLDEPLNNLDMkhaVQMMKVLRKLVDELGKTIVMVMHDINFAScYSDYMVALKDGAVVCEG 218
Cdd:TIGR01193 626 LLTDSKVLILDESTSNLDT---ITEKKIVNNLLNLQDKTIIFVAHRLSVAK-QSDKIIVLDHGKIIEQG 690
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
21-196 |
4.26e-18 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 82.93 E-value: 4.26e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 21 SLSVPRR-KLTSLIGPNGAGKSTLLSMMS-RLIPK----DGGEIWIE------GKEIARYRTEELAKKIS-ILK-QSNHI 86
Cdd:PRK13409 92 GLPIPKEgKVTGILGPNGIGKTTAVKILSgELIPNlgdyEEEPSWDEvlkrfrGTELQNYFKKLYNGEIKvVHKpQYVDL 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 87 AARL---TVHELvsfgrfpysrgrLTRQD-RDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYIFLDEP 162
Cdd:PRK13409 172 IPKVfkgKVREL------------LKKVDeRGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEP 239
|
170 180 190
....*....|....*....|....*....|....
gi 831463781 163 LNNLDMKHAVQMMKVLRKLVDelGKTIVMVMHDI 196
Cdd:PRK13409 240 TSYLDIRQRLNVARLIRELAE--GKYVLVVEHDL 271
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
1-229 |
4.29e-18 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 82.95 E-value: 4.29e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDG--GEIWIEGKEI-ARYRTEELAKKI 77
Cdd:TIGR02633 1 LLEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTwdGEIYWSGSPLkASNIRDTERAGI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 78 SILKQSNHIAARLTVHELVSFGRFPYSRGRLTRQDRDYVR--EAIRYMELEPLQD-RYMDELSGGQRQRAYIAMVLAQDT 154
Cdd:TIGR02633 81 VIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRakNLLRELQLDADNVtRPVGDYGGGQQQLVEIAKALNKQA 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 831463781 155 DYIFLDEPLNNLDMKHAVQMMKVLRKLvDELGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGDVSSIMRDEVL 229
Cdd:TIGR02633 161 RLLILDEPSSSLTEKETEILLDIIRDL-KAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTMSEDDII 234
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
33-204 |
4.30e-18 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 82.93 E-value: 4.30e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 33 IGPNGAGKSTLLSMMSRLIPKDGGEIwiegkeiaryrteELAKKISILKQSNHIAARLTVHELVSFGRFPYSrgrltrqD 112
Cdd:PRK13409 371 VGPNGIGKTTFAKLLAGVLKPDEGEV-------------DPELKISYKPQYIKPDYDGTVEDLLRSITDDLG-------S 430
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 113 RDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDELGKTIVMV 192
Cdd:PRK13409 431 SYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVV 510
|
170
....*....|..
gi 831463781 193 MHDINFASCYSD 204
Cdd:PRK13409 511 DHDIYMIDYISD 522
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
11-205 |
5.66e-18 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 80.60 E-value: 5.66e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 11 YGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSR---LIP--KDGGEIWIEGKEIARYRTE--ELAKKISILKQS 83
Cdd:PRK14243 20 YGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRlndLIPgfRVEGKVTFHGKNLYAPDVDpvEVRRRIGMVFQK 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 84 NHIAARlTVHELVSFG-RFPYSRGRLTRQDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYIFLDEP 162
Cdd:PRK14243 100 PNPFPK-SIYDNIAYGaRINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEP 178
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 831463781 163 LNNLDmkhAVQMMKVlRKLVDELGK--TIVMVMHDINFASCYSDY 205
Cdd:PRK14243 179 CSALD---PISTLRI-EELMHELKEqyTIIIVTHNMQQAARVSDM 219
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
1-218 |
5.97e-18 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 80.16 E-value: 5.97e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIwiegkeiarYRTEELakKISIL 80
Cdd:PRK09544 4 LVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI---------KRNGKL--RIGYV 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 81 KQSNHIAARLTvhelVSFGRFPYSRGRLTRQDrdyVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYIFLD 160
Cdd:PRK09544 73 PQKLYLDTTLP----LTVNRFLRLRPGTKKED---ILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLD 145
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 831463781 161 EPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFASCYSDYMVALkDGAVVCEG 218
Cdd:PRK09544 146 EPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCL-NHHICCSG 202
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
2-195 |
6.68e-18 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 82.47 E-value: 6.68e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIeGKEIaryrteelakKISILK 81
Cdd:PRK11819 325 IEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKI-GETV----------KLAYVD 393
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 82 QS-NHIAARLTVHELVSFGRFPYSRGRLTRQDRDYVReaiRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYIFLD 160
Cdd:PRK11819 394 QSrDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVG---RFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLD 470
|
170 180 190
....*....|....*....|....*....|....*
gi 831463781 161 EPLNNLDmkhaVQMMKVLRKLVDELGKTIVMVMHD 195
Cdd:PRK11819 471 EPTNDLD----VETLRALEEALLEFPGCAVVISHD 501
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
1-212 |
6.96e-18 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 79.53 E-value: 6.96e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRY-GGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEE---LAKK 76
Cdd:PRK10908 1 MIRFEHVSKAYlGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREvpfLRRQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 77 ISILKQSNHIAARLTVHELVSfgrFPYSRGRLTRQD-RDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTD 155
Cdd:PRK10908 81 IGMIFQDHHLLMDRTVYDNVA---IPLIIAGASGDDiRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPA 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 831463781 156 YIFLDEPLNNLDMKHAVQMMKVLRKLvDELGKTIVMVMHDINFASCYSDYMVALKDG 212
Cdd:PRK10908 158 VLLADEPTGNLDDALSEGILRLFEEF-NRVGVTVLMATHDIGLISRRSYRMLTLSDG 213
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
13-218 |
9.63e-18 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 79.20 E-value: 9.63e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 13 GKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAKKISILKQsnhiaarltv 92
Cdd:cd03253 13 GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQ---------- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 93 hELVSFG---RFPYSRGRLTRQDRDyVREAIRYMELEPLQDRYMD-----------ELSGGQRQRAYIAMVLAQDTDYIF 158
Cdd:cd03253 83 -DTVLFNdtiGYNIRYGRPDATDEE-VIEAAKAAQIHDKIMRFPDgydtivgerglKLSGGEKQRVAIARAILKNPPILL 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 159 LDEPLNNLDMKHAVQMMKVLRKLVDelGKTIVMVMHDINFAScYSDYMVALKDGAVVCEG 218
Cdd:cd03253 161 LDEATSALDTHTEREIQAALRDVSK--GRTTIVIAHRLSTIV-NADKIIVLKDGRIVERG 217
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
5-223 |
1.56e-17 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 81.29 E-value: 1.56e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 5 KQVLKR-YGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGgEIWIEGKEIARYRTEEL---AKKISIL 80
Cdd:PRK15134 289 KGILKRtVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQG-EIWFDGQPLHNLNRRQLlpvRHRIQVV 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 81 KQSNHIA--ARLTVHELVSFGRFPYSRGRLTRQDRDYVREAIRYMELEP-LQDRYMDELSGGQRQRAYIAMVLAQDTDYI 157
Cdd:PRK15134 368 FQDPNSSlnPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPeTRHRYPAEFSGGQRQRIAIARALILKPSLI 447
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 831463781 158 FLDEPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGDVSSI 223
Cdd:PRK15134 448 ILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERV 513
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
20-212 |
1.71e-17 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 77.89 E-value: 1.71e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 20 VSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKeiaryrteelakkISILKQSNHIAaRLTVHELVSFG 99
Cdd:cd03250 24 INLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGS-------------IAYVSQEPWIQ-NGTIRENILFG 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 100 RfPYsrgrltrqDRDYVREAIRYMELEP----LQDRYMDE-------LSGGQRQRAYIAMVLAQDTDYIFLDEPLNNLDM 168
Cdd:cd03250 90 K-PF--------DEERYEKVIKACALEPdleiLPDGDLTEigekginLSGGQKQRISLARAVYSDADIYLLDDPLSAVDA 160
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 831463781 169 KHAVQMMK--VLRKLVDelGKTIVMVMHDINFAScYSDYMVALKDG 212
Cdd:cd03250 161 HVGRHIFEncILGLLLN--NKTRILVTHQLQLLP-HADQIVVLDNG 203
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
1-223 |
1.85e-17 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 79.37 E-value: 1.85e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRYGGKTVIDR---VSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAKKI 77
Cdd:PRK13642 4 ILEVENLVFKYEKESDVNQlngVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 78 SILKQS-NHIAARLTVHELVSFGRfpYSRGRLTRQDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDY 156
Cdd:PRK13642 84 GMVFQNpDNQFVGATVEDDVAFGM--ENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEI 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 831463781 157 IFLDEPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFASCySDYMVALKDGAVVCEGDVSSI 223
Cdd:PRK13642 162 IILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAAS-SDRILVMKAGEIIKEAAPSEL 227
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
12-194 |
2.36e-17 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 77.28 E-value: 2.36e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 12 GGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMS--RLIPKDGGEIWIEGKEiaryRTEELAKKISILKQsnhiaar 89
Cdd:cd03232 18 GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAgrKTAGVITGEILINGRP----LDKNFQRSTGYVEQ------- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 90 LTVHElvsfgrfpysrGRLTrqdrdyVREAIRYmeleplqDRYMDELSGGQRQRAYIAMVLAQDTDYIFLDEPLNNLDMK 169
Cdd:cd03232 87 QDVHS-----------PNLT------VREALRF-------SALLRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQ 142
|
170 180
....*....|....*....|....*
gi 831463781 170 HAVQMMKVLRKLVDElGKTIVMVMH 194
Cdd:cd03232 143 AAYNIVRFLKKLADS-GQAILCTIH 166
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
13-227 |
2.50e-17 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 80.66 E-value: 2.50e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 13 GKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGgEIWIEGKEIARYRTEELAKKISILKQSNHIAARlTV 92
Cdd:PRK11174 362 GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQG-SLKINGIELRELDPESWRKHLSWVGQNPQLPHG-TL 439
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 93 HELVSFGRFPYSRGRLTRQ-DRDYVREAIRYMEL---EPLQDRyMDELSGGQRQRAYIAMVLAQDTDYIFLDEPLNNLDM 168
Cdd:PRK11174 440 RDNVLLGNPDASDEQLQQAlENAWVSEFLPLLPQgldTPIGDQ-AAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDA 518
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 831463781 169 KHAVQMMKVLRKLVdeLGKTIVMVMHDINFASCYsDYMVALKDGAVVCEGDVSSIMRDE 227
Cdd:PRK11174 519 HSEQLVMQALNAAS--RRQTTLMVTHQLEDLAQW-DQIWVMQDGQIVQQGDYAELSQAG 574
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
1-226 |
2.56e-17 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 80.82 E-value: 2.56e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARY--RTEELAkKIS 78
Cdd:PRK10762 4 LLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNgpKSSQEA-GIG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 79 ILKQSNHIAARLTVHELVSFGRFPYSR-GRL------TRQDRDYVREAIRYMeleplQDRYMDELSGGQRQRAYIAMVLA 151
Cdd:PRK10762 83 IIHQELNLIPQLTIAENIFLGREFVNRfGRIdwkkmyAEADKLLARLNLRFS-----SDKLVGELSIGEQQMVEIAKVLS 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 831463781 152 QDTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDElGKTIVMVMHDIN--FASCysDYMVALKDGAVVCEGDVSSIMRD 226
Cdd:PRK10762 158 FESKVIIMDEPTDALTDTETESLFRVIRELKSQ-GRGIVYISHRLKeiFEIC--DDVTVFRDGQFIAEREVADLTED 231
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
1-230 |
3.95e-17 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 78.49 E-value: 3.95e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRY-GGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARY-RTEELAKKIS 78
Cdd:PRK13644 1 MIRLENVSYSYpDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFsKLQGIRKLVG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 79 ILKQS--NHIAARlTVHELVSFGrfPYSRGRLTRQDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDY 156
Cdd:PRK13644 81 IVFQNpeTQFVGR-TVEEDLAFG--PENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPEC 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 831463781 157 IFLDEPLNNLDMKHAVQMMKVLRKLvDELGKTIVMVMHDINFASCySDYMVALKDGAVVCEGDVSSIMRDEVLR 230
Cdd:PRK13644 158 LIFDEVTSMLDPDSGIAVLERIKKL-HEKGKTIVYITHNLEELHD-ADRIIVMDRGKIVLEGEPENVLSDVSLQ 229
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
9-218 |
4.08e-17 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 77.57 E-value: 4.08e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 9 KRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKeIAryrteelakkiSILKQSNHIAA 88
Cdd:cd03220 30 GEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGR-VS-----------SLLGLGGGFNP 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 89 RLTVHELVsfgrfpYSRGRLTRQDRDYVREAIRYM----ELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYIFLDEPLN 164
Cdd:cd03220 98 ELTGRENI------YLNGRLLGLSRKEIDEKIDEIiefsELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLA 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 831463781 165 NLDMKHAVQMMKVLRKLVDElGKTIVMVMHDINFASCYSDYMVALKDGAVVCEG 218
Cdd:cd03220 172 VGDAAFQEKCQRRLRELLKQ-GKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
|
| ABCC_SUR1_N |
cd03290 |
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ... |
13-213 |
4.95e-17 |
|
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213257 [Multi-domain] Cd Length: 218 Bit Score: 76.99 E-value: 4.95e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 13 GKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLL-SMMSRLIPKDGGEIW----------IEGKEIARYRTEELAKKISILK 81
Cdd:cd03290 13 GLATLSNINIRIPTGQLTMIVGQVGCGKSSLLlAILGEMQTLEGKVHWsnknesepsfEATRSRNRYSVAYAAQKPWLLN 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 82 QsnhiaarlTVHELVSFGRfPYSRGRLTRqdrdyVREAIRY---MELEPLQDRY-MDE----LSGGQRQRAYIAMVLAQD 153
Cdd:cd03290 93 A--------TVEENITFGS-PFNKQRYKA-----VTDACSLqpdIDLLPFGDQTeIGErginLSGGQRQRICVARALYQN 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 831463781 154 TDYIFLDEPLNNLDMKHAVQMMKV-LRKLVDELGKTIVMVMHDINFAScYSDYMVALKDGA 213
Cdd:cd03290 159 TNIVFLDDPFSALDIHLSDHLMQEgILKFLQDDKRTLVLVTHKLQYLP-HADWIIAMKDGS 218
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
14-197 |
6.81e-17 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 78.21 E-value: 6.81e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 14 KTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARyRTEELAKKIS-ILKQSNHIAARLTV 92
Cdd:COG4586 35 VEAVDDISFTIEPGEIVGFIGPNGAGKSTTIKMLTGILVPTSGEVRVLGYVPFK-RRKEFARRIGvVFGQRSQLWWDLPA 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 93 HElvSFgrfpysrgRLTRQ-----DRDY---VREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYIFLDEPLN 164
Cdd:COG4586 114 ID--SF--------RLLKAiyripDAEYkkrLDELVELLDLGELLDTPVRQLSLGQRMRCELAAALLHRPKILFLDEPTI 183
|
170 180 190
....*....|....*....|....*....|....*
gi 831463781 165 NLD--MKHAVQmmKVLRKLVDELGKTIVMVMHDIN 197
Cdd:COG4586 184 GLDvvSKEAIR--EFLKEYNRERGTTILLTSHDMD 216
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
16-194 |
9.41e-17 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 79.10 E-value: 9.41e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 16 VIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAKKISILKQSNHI-AARLtvhe 94
Cdd:PRK11160 355 VLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLfSATL---- 430
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 95 lvsfgrfpysRGRLT----RQDRDYVREAIRYMELEPL--QDRYMD--------ELSGGQRQRAYIAMVLAQDTDYIFLD 160
Cdd:PRK11160 431 ----------RDNLLlaapNASDEALIEVLQQVGLEKLleDDKGLNawlgeggrQLSGGEQRRLGIARALLHDAPLLLLD 500
|
170 180 190
....*....|....*....|....*....|....
gi 831463781 161 EPLNNLDMKHAVQMMKVLRKLVDelGKTIVMVMH 194
Cdd:PRK11160 501 EPTEGLDAETERQILELLAEHAQ--NKTVLMITH 532
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
2-218 |
1.21e-16 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 76.09 E-value: 1.21e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRYGG--KTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAKKISI 79
Cdd:cd03245 3 IEFRNVSFSYPNqeIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGY 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 80 LKQSNHIAARlTVHELVSFGRFPYSRGRLTRQDR-----DYVREAIRYMELEpLQDRYMdELSGGQRQRAYIAMVLAQDT 154
Cdd:cd03245 83 VPQDVTLFYG-TLRDNITLGAPLADDERILRAAElagvtDFVNKHPNGLDLQ-IGERGR-GLSGGQRQAVALARALLNDP 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 831463781 155 DYIFLDEPLNNLDMKHAVQMMKVLRKLVDelGKTIVMVMHDINFAScYSDYMVALKDGAVVCEG 218
Cdd:cd03245 160 PILLLDEPTSAMDMNSEERLKERLRQLLG--DKTLIIITHRPSLLD-LVDRIIVMDSGRIVADG 220
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
6-200 |
1.21e-16 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 76.39 E-value: 1.21e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 6 QVLKRYG-GKT---VIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEI----ARYRTEELAKKI 77
Cdd:PRK11629 10 NLCKRYQeGSVqtdVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMsklsSAAKAELRNQKL 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 78 SILKQSNHIAARLTVHELVSFgrfPYSRGRLTR-QDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDY 156
Cdd:PRK11629 90 GFIYQFHHLLPDFTALENVAM---PLLIGKKKPaEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRL 166
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 831463781 157 IFLDEPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFAS 200
Cdd:PRK11629 167 VLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAK 210
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
16-215 |
1.99e-16 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 78.23 E-value: 1.99e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 16 VIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAK----KISILKQSNHIAARLT 91
Cdd:PRK10535 23 VLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQlrreHFGFIFQRYHLLSHLT 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 92 VHELVSFGRFPYSRGRLTRQDRdyVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYIFLDEPLNNLDMKHA 171
Cdd:PRK10535 103 AAQNVEVPAVYAGLERKQRLLR--AQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSG 180
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 831463781 172 VQMMKVLRKLVDElGKTIVMVMHDINFAScYSDYMVALKDGAVV 215
Cdd:PRK10535 181 EEVMAILHQLRDR-GHTVIIVTHDPQVAA-QAERVIEIRDGEIV 222
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
2-218 |
2.87e-16 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 75.60 E-value: 2.87e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRYG--GKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAKKISI 79
Cdd:cd03252 1 ITFEHVRFRYKpdGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 80 LKQSNHIAARlTVHELVSFGRfpysrgrlTRQDRDYVREAIRY-------MELEPLQDRYMDE----LSGGQRQRAYIAM 148
Cdd:cd03252 81 VLQENVLFNR-SIRDNIALAD--------PGMSMERVIEAAKLagahdfiSELPEGYDTIVGEqgagLSGGQRQRIAIAR 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 149 VLAQDTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDelGKTIVMVMHDINFASCySDYMVALKDGAVVCEG 218
Cdd:cd03252 152 ALIHNPRILIFDEATSALDYESEHAIMRNMHDICA--GRTVIIIAHRLSTVKN-ADRIIVMEKGRIVEQG 218
|
|
| type_I_sec_LssB |
TIGR03375 |
type I secretion system ATPase, LssB family; Type I protein secretion is a system in some ... |
2-194 |
3.61e-16 |
|
type I secretion system ATPase, LssB family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 274550 [Multi-domain] Cd Length: 694 Bit Score: 77.60 E-value: 3.61e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRYGG--KTVIDRVSLSV-PRRKLtSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAKKIS 78
Cdd:TIGR03375 464 IEFRNVSFAYPGqeTPALDNVSLTIrPGEKV-AIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIG 542
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 79 ILKQSnhiaARL---TVHELVSFGRfPYSRgrltrqDRDYVREA-----IRYMELEPLQ-DRYMDE----LSGGQRQRAY 145
Cdd:TIGR03375 543 YVPQD----PRLfygTLRDNIALGA-PYAD------DEEILRAAelagvTEFVRRHPDGlDMQIGErgrsLSGGQRQAVA 611
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 831463781 146 IAMVLAQDTDYIFLDEPLNNLDMKHAVQMMKVLRKLVdeLGKTIVMVMH 194
Cdd:TIGR03375 612 LARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL--AGKTLVLVTH 658
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
1-218 |
4.44e-16 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 75.03 E-value: 4.44e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAKKiSIL 80
Cdd:PRK11300 5 LLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARM-GVV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 81 KQSNHIaaRL----TVHE--LVSFGRF---PYSRGRL-TRQDRDYVREAIRY-------MELEPLQDRYMDELSGGQRQR 143
Cdd:PRK11300 84 RTFQHV--RLfremTVIEnlLVAQHQQlktGLFSGLLkTPAFRRAESEALDRaatwlerVGLLEHANRQAGNLAYGQQRR 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 831463781 144 AYIAMVLAQDTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFASCYSDYMVALKDGAVVCEG 218
Cdd:PRK11300 162 LEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANG 236
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
3-167 |
4.95e-16 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 73.93 E-value: 4.95e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 3 EVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRtEELAKKISILKQ 82
Cdd:TIGR01189 2 AARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTPLAEQR-DEPHENILYLGH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 83 SNHIAARLTVHELVSFGRfpysrgRLTRQDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIA-MVLAQDTDYIfLDE 161
Cdd:TIGR01189 81 LPGLKPELSALENLHFWA------AIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALArLWLSRRPLWI-LDE 153
|
....*.
gi 831463781 162 PLNNLD 167
Cdd:TIGR01189 154 PTTALD 159
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
1-197 |
8.02e-16 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 73.98 E-value: 8.02e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAKKISIL 80
Cdd:PRK10247 7 LLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYC 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 81 KQSNHIAARLTVHELVsfgrFPYsRGRLTRQDRDYVREAIRYMEL-EPLQDRYMDELSGGQRQRAYIAMVLAQDTDYIFL 159
Cdd:PRK10247 87 AQTPTLFGDTVYDNLI----FPW-QIRNQQPDPAIFLDDLERFALpDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLL 161
|
170 180 190
....*....|....*....|....*....|....*...
gi 831463781 160 DEPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDIN 197
Cdd:PRK10247 162 DEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD 199
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
17-225 |
8.53e-16 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 74.35 E-value: 8.53e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 17 IDRVSLSVPRRKLTSLIGPNGAGKS-TLLSMMSRLIP---KDGGEIWIEGKEIAryrTEEL-AKKISILKQsNHIAARLT 91
Cdd:PRK10418 19 VHGVSLTLQRGRVLALVGGSGSGKSlTCAAALGILPAgvrQTAGRVLLDGKPVA---PCALrGRKIATIMQ-NPRSAFNP 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 92 VHELVSFGRFP-YSRGRLTrqDRDYVREAIRYMELEPLQ---DRYMDELSGGQRQRAYIAMVLAQDTDYIFLDEPLNNLD 167
Cdd:PRK10418 95 LHTMHTHARETcLALGKPA--DDATLTAALEAVGLENAArvlKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLD 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 831463781 168 MKHAVQMMKVLRKLVDELGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGDVSSIMR 225
Cdd:PRK10418 173 VVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFN 230
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
1-225 |
8.68e-16 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 75.68 E-value: 8.68e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVE--VKQVLkrygGKTVIDrVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIarYRTEelaKKIS 78
Cdd:PRK11144 1 MLElnFKQQL----GDLCLT-VNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVL--FDAE---KGIC 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 79 ILKQSNHIA-----ARLtvhelvsfgrFP-YS-RGRLT----RQDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIA 147
Cdd:PRK11144 71 LPPEKRRIGyvfqdARL----------FPhYKvRGNLRygmaKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIG 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 148 MVLAQDTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGDV-----SS 222
Cdd:PRK11144 141 RALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLeevwaSS 220
|
...
gi 831463781 223 IMR 225
Cdd:PRK11144 221 AMR 223
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
14-194 |
9.37e-16 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 76.24 E-value: 9.37e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 14 KTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKD---GGEIWIEGKEIARyrtEELAKKISILKQSNHIAARL 90
Cdd:TIGR00955 38 KHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGvkgSGSVLLNGMPIDA---KEMRAISAYVQQDDLFIPTL 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 91 TVHELVSF-GRFPYSRGRLTRQDRDYVREAIRYMELEPLQD------RYMDELSGGQRQRAYIAMVLAQDTDYIFLDEPL 163
Cdd:TIGR00955 115 TVREHLMFqAHLRMPRRVTKKEKRERVDEVLQALGLRKCANtrigvpGRVKGLSGGERKRLAFASELLTDPPLLFCDEPT 194
|
170 180 190
....*....|....*....|....*....|.
gi 831463781 164 NNLDMKHAVQMMKVLRKLVDElGKTIVMVMH 194
Cdd:TIGR00955 195 SGLDSFMAYSVVQVLKGLAQK-GKTIICTIH 224
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
2-230 |
9.91e-16 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 75.94 E-value: 9.91e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRYGG--KTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAKKISI 79
Cdd:COG4618 331 LSVENLTVVPPGskRPILRGVSFSLEPGEVLGVIGPSGSGKSTLARLLVGVWPPTAGSVRLDGADLSQWDREELGRHIGY 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 80 LKQS----------NhI-------------AARLT-VHELVsfGRFP--YSrgrlTRQDRDYVReairymeleplqdrym 133
Cdd:COG4618 411 LPQDvelfdgtiaeN-IarfgdadpekvvaAAKLAgVHEMI--LRLPdgYD----TRIGEGGAR---------------- 467
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 134 deLSGGQRQRAYIAMVLAQDTDYIFLDEPLNNLD------MKHAVQMMKvlrklvdELGKTIVMVMHDINFASCySDYMV 207
Cdd:COG4618 468 --LSGGQRQRIGLARALYGDPRLVVLDEPNSNLDdegeaaLAAAIRALK-------ARGATVVVITHRPSLLAA-VDKLL 537
|
250 260
....*....|....*....|...
gi 831463781 208 ALKDGAVVCEGDvssimRDEVLR 230
Cdd:COG4618 538 VLRDGRVQAFGP-----RDEVLA 555
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
1-232 |
1.18e-15 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 75.86 E-value: 1.18e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYrTEELAKKISI- 79
Cdd:PRK15439 11 LLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARL-TPAKAHQLGIy 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 80 -LKQSNHIAARLTVHELVSFGrfpysrgrLTRQDRDYVREAIRYMELEPLQDRYMD--ELSGGQRQRAYIAMVLAQDTDY 156
Cdd:PRK15439 90 lVPQEPLLFPNLSVKENILFG--------LPKRQASMQKMKQLLAALGCQLDLDSSagSLEVADRQIVEILRGLMRDSRI 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 831463781 157 IFLDEPLNNLDMKHAVQMMKVLRKLVDElGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGDVSSIMRDEVLRGI 232
Cdd:PRK15439 162 LILDEPTASLTPAETERLFSRIRELLAQ-GVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTDDIIQAI 236
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
4-229 |
1.28e-15 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 73.81 E-value: 1.28e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 4 VKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIwiegkeiaRYRTEElAKKISILKQS 83
Cdd:PRK11701 9 VRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEV--------HYRMRD-GQLRDLYALS 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 84 NHIAARLT------VHELVSFG-RFPYSRG-----RLTRQ-DRDYVR---EAIRYME-LEPLQDRyMDEL----SGGQRQ 142
Cdd:PRK11701 80 EAERRRLLrtewgfVHQHPRDGlRMQVSAGgnigeRLMAVgARHYGDiraTAGDWLErVEIDAAR-IDDLpttfSGGMQQ 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 143 RAYIAMVLAQDTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGdvss 222
Cdd:PRK11701 159 RLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESG---- 234
|
....*..
gi 831463781 223 iMRDEVL 229
Cdd:PRK11701 235 -LTDQVL 240
|
|
| type_I_sec_PrtD |
TIGR01842 |
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in ... |
12-229 |
1.53e-15 |
|
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 200134 [Multi-domain] Cd Length: 544 Bit Score: 75.46 E-value: 1.53e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 12 GGKTVIDR-VSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAKKISILKQ-------- 82
Cdd:TIGR01842 328 GGKKPTLRgISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQdvelfpgt 407
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 83 -------------SNHI--AARLT-VHELVSfgRFPysrgrltrqdRDYvreairymeleplqDRYMDE----LSGGQRQ 142
Cdd:TIGR01842 408 vaeniarfgenadPEKIieAAKLAgVHELIL--RLP----------DGY--------------DTVIGPggatLSGGQRQ 461
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 143 RAYIAMVLAQDTDYIFLDEPLNNLDMKHAVQMMKVLRKLvDELGKTIVMVMHDINFASCySDYMVALKDGAVVCEGDvss 222
Cdd:TIGR01842 462 RIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKAL-KARGITVVVITHRPSLLGC-VDKILVLQDGRIARFGE--- 536
|
....*..
gi 831463781 223 imRDEVL 229
Cdd:TIGR01842 537 --RDEVL 541
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
3-230 |
1.84e-15 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 75.35 E-value: 1.84e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 3 EVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKD--GGEIWIEGKEI-ARYRTEELAKKISI 79
Cdd:PRK13549 7 EMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGtyEGEIIFEGEELqASNIRDTERAGIAI 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 80 LKQSNHIAARLTVHELVSFGRFPYSRGRLtrqdrDYVREAIRYMELepLQDRYMD--------ELSGGQRQRAYIAMVLA 151
Cdd:PRK13549 87 IHQELALVKELSVLENIFLGNEITPGGIM-----DYDAMYLRAQKL--LAQLKLDinpatpvgNLGLGQQQLVEIAKALN 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 831463781 152 QDTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDElGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGDVSSIMRDEVLR 230
Cdd:PRK13549 160 KQARLLILDEPTASLTESETAVLLDIIRDLKAH-GIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMTEDDIIT 237
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
2-240 |
2.00e-15 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 72.96 E-value: 2.00e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRYGGK---TVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAKKIS 78
Cdd:cd03249 1 IEFKNVSFRYPSRpdvPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 79 ILKQSNHIAARlTVHELVSFGRFPysrgrltrQDRDYVREAIRYMEL----EPLQDRYMDE-------LSGGQRQRAYIA 147
Cdd:cd03249 81 LVSQEPVLFDG-TIAENIRYGKPD--------ATDEEVEEAAKKANIhdfiMSLPDGYDTLvgergsqLSGGQKQRIAIA 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 148 MVLAQDTDYIFLDEPLNNLDmkhaVQMMKVLRKLVDEL--GKTIVMVMHDINFAScYSDYMVALKDGAVVCEGDVSSIMR 225
Cdd:cd03249 152 RALLRNPKILLLDEATSALD----AESEKLVQEALDRAmkGRTTIVIAHRLSTIR-NADLIAVLQNGQVVEQGTHDELMA 226
|
250
....*....|....*
gi 831463781 226 devLRGIYDLDVRVQ 240
Cdd:cd03249 227 ---QKGVYAKLVKAQ 238
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
2-194 |
2.48e-15 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 75.06 E-value: 2.48e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRYGGKTV--IDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAKKISI 79
Cdd:PRK11176 342 IEFRNVTFTYPGKEVpaLRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVAL 421
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 80 LKQSNHIAARlTVHELVSFGRFP-YSRGRLTRQDRD-YVREAIRYME--LEPLQDRYMDELSGGQRQRAYIAMVLAQDTD 155
Cdd:PRK11176 422 VSQNVHLFND-TIANNIAYARTEqYSREQIEEAARMaYAMDFINKMDngLDTVIGENGVLLSGGQRQRIAIARALLRDSP 500
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 831463781 156 YIFLDEPLNNLDM--KHAVQmmkvlrKLVDELGK--TIVMVMH 194
Cdd:PRK11176 501 ILILDEATSALDTesERAIQ------AALDELQKnrTSLVIAH 537
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
12-194 |
2.51e-15 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 75.15 E-value: 2.51e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 12 GGKTVI-DRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRliPKDGGeiWIEGKEI---ARYRTEELAKKISILKQSN-HI 86
Cdd:TIGR00956 773 KEKRVIlNNVDGWVKPGTLTALMGASGAGKTTLLNVLAE--RVTTG--VITGGDRlvnGRPLDSSFQRSIGYVQQQDlHL 848
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 87 AaRLTVHELVSFGRFPYSRGRLTRQDR-DYVREAIRYMELEPLQDRYMDE----LSGGQRQRAYIAMVLAQDTD-YIFLD 160
Cdd:TIGR00956 849 P-TSTVRESLRFSAYLRQPKSVSKSEKmEYVEEVIKLLEMESYADAVVGVpgegLNVEQRKRLTIGVELVAKPKlLLFLD 927
|
170 180 190
....*....|....*....|....*....|....
gi 831463781 161 EPLNNLDMKHAVQMMKVLRKLVDElGKTIVMVMH 194
Cdd:TIGR00956 928 EPTSGLDSQTAWSICKLMRKLADH-GQAILCTIH 960
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
20-227 |
4.29e-15 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 74.37 E-value: 4.29e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 20 VSLSVPRR----------------KLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAKKISILKQS 83
Cdd:TIGR00958 484 VSFSYPNRpdvpvlkgltftlhpgEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQE 563
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 84 NHIAARlTVHELVSFGrfpysrgrLTRQDRDYVREAIR-------YMELEPLQDRYMDE----LSGGQRQRAYIAMVLAQ 152
Cdd:TIGR00958 564 PVLFSG-SVRENIAYG--------LTDTPDEEIMAAAKaanahdfIMEFPNGYDTEVGEkgsqLSGGQKQRIAIARALVR 634
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 831463781 153 DTDYIFLDEPLNNLDmkhaVQMMKVLRKLVDELGKTIVMVMHDINFAScYSDYMVALKDGAVVCEGDVSSIMRDE 227
Cdd:TIGR00958 635 KPRVLILDEATSALD----AECEQLLQESRSRASRTVLLIAHRLSTVE-RADQILVLKKGSVVEMGTHKQLMEDQ 704
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
2-210 |
5.57e-15 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 72.38 E-value: 5.57e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGgEIWIEGK-EI-------ARYRTEEL 73
Cdd:PRK14258 8 IKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELES-EVRVEGRvEFfnqniyeRRVNLNRL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 74 AKKISILKQSNHIAArLTVHELVSFG-RFPYSRGRLtrQDRDYVREAIRYMEL-EPLQDRYMD---ELSGGQRQRAYIAM 148
Cdd:PRK14258 87 RRQVSMVHPKPNLFP-MSVYDNVAYGvKIVGWRPKL--EIDDIVESALKDADLwDEIKHKIHKsalDLSGGQQQRLCIAR 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 831463781 149 VLAQDTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFASCYSDYMVALK 210
Cdd:PRK14258 164 ALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFK 225
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
7-229 |
9.89e-15 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 73.23 E-value: 9.89e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 7 VLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEE-LAKKISILKQSNH 85
Cdd:PRK10982 4 ISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEaLENGISMVHQELN 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 86 IAARLTVHELVSFGRFPySRGRLTRQDRDYVREAIRYMELEPLQD--RYMDELSGGQRQRAYIAMVLAQDTDYIFLDEPL 163
Cdd:PRK10982 84 LVLQRSVMDNMWLGRYP-TKGMFVDQDKMYRDTKAIFDELDIDIDprAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPT 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 831463781 164 NNLDMKHAVQMMKVLRKLVDElGKTIVMVMHDIN--FASCysDYMVALKDGAVVCEGDVSSIMRDEVL 229
Cdd:PRK10982 163 SSLTEKEVNHLFTIIRKLKER-GCGIVYISHKMEeiFQLC--DEITILRDGQWIATQPLAGLTMDKII 227
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
29-218 |
1.44e-14 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 72.96 E-value: 1.44e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 29 LTSLIGPNGAGKSTLLSMMSRliPKDGGeiWIEGK-EIARY-RTEELAKKISILKQSNHI-AARLTVHELVSFGRFPYSR 105
Cdd:PLN03140 908 LTALMGVSGAGKTTLMDVLAG--RKTGG--YIEGDiRISGFpKKQETFARISGYCEQNDIhSPQVTVRESLIYSAFLRLP 983
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 106 GRLTRQDR-DYVREAIRYMELEPLQDRY-----MDELSGGQRQRAYIAMVLAQDTDYIFLDEPLNNLDMKHAVQMMKVLR 179
Cdd:PLN03140 984 KEVSKEEKmMFVDEVMELVELDNLKDAIvglpgVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1063
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 831463781 180 KLVDElGKTIVMVMH--DINFASCYSDYMVALKDGAVVCEG 218
Cdd:PLN03140 1064 NTVDT-GRTVVCTIHqpSIDIFEAFDELLLMKRGGQVIYSG 1103
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
3-228 |
1.76e-14 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 72.51 E-value: 1.76e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 3 EVKQVLKRYGGKtvIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIA-RYRTEELAKKISILK 81
Cdd:PRK09700 267 EVRNVTSRDRKK--VRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISpRSPLDAVKKGMAYIT 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 82 QSNH---------IAARLTVHELVSFGRFPYSRGRLTRQDRDYVREAIRymELEPLQ----DRYMDELSGGQRQRAYIAM 148
Cdd:PRK09700 345 ESRRdngffpnfsIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQR--ELLALKchsvNQNITELSGGNQQKVLISK 422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 149 VLAQDTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDElGKTIVMVmhdinfASCYSDYMVALKDGAVVCEGDVSSIM--RD 226
Cdd:PRK09700 423 WLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADD-GKVILMV------SSELPEIITVCDRIAVFCEGRLTQILtnRD 495
|
..
gi 831463781 227 EV 228
Cdd:PRK09700 496 DM 497
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
9-230 |
2.18e-14 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 70.11 E-value: 2.18e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 9 KRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKeiaryrteelakkisilkqsnhIAA 88
Cdd:COG1134 34 TRREEFWALKDVSFEVERGESVGIIGRNGAGKSTLLKLIAGILEPTSGRVEVNGR----------------------VSA 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 89 ----------RLTVHELVsfgrfpYSRGRL---TRQDRDYVREAIR-YMELEplqdRYMDE----LSGGQRQRAYIAMVL 150
Cdd:COG1134 92 llelgagfhpELTGRENI------YLNGRLlglSRKEIDEKFDEIVeFAELG----DFIDQpvktYSSGMRARLAFAVAT 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 151 AQDTDYIFLDEPLnnldmkhAV-----QM--MKVLRKLVDElGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGDVssi 223
Cdd:COG1134 162 AVDPDILLVDEVL-------AVgdaafQKkcLARIRELRES-GRTVIFVSHSMGAVRRLCDRAIWLEKGRLVMDGDP--- 230
|
....*..
gi 831463781 224 mrDEVLR 230
Cdd:COG1134 231 --EEVIA 235
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
3-221 |
2.60e-14 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 69.09 E-value: 2.60e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 3 EVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLS-MMSRLIPK-DGGEIWIEGKEIARYRTEELAKK-ISI 79
Cdd:cd03217 2 EIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKtIMGHPKYEvTEGEILFKGEDITDLPPEERARLgIFL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 80 LKQSNHIAARLTVHELVsfgrfpysrgrltrqdrdyvreairymeleplqdRYMDE-LSGGQRQRAYIAMVLAQDTDYIF 158
Cdd:cd03217 82 AFQYPPEIPGVKNADFL----------------------------------RYVNEgFSGGEKKRNEILQLLLLEPDLAI 127
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 831463781 159 LDEPLNNLDMKhAVQMM-KVLRKLVDElGKTIVMVMHDINFAscysDYMVA-----LKDGAVVCEGDVS 221
Cdd:cd03217 128 LDEPDSGLDID-ALRLVaEVINKLREE-GKSVLIITHYQRLL----DYIKPdrvhvLYDGRIVKSGDKE 190
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
13-194 |
3.15e-14 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 68.33 E-value: 3.15e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 13 GKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPkdggeiWIEGKeiaryrteelakkISILKQSNH--IAARl 90
Cdd:cd03223 13 GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWP------WGSGR-------------IGMPEGEDLlfLPQR- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 91 tvhelvsfgrfPY-SRGRLtrqdrdyvREAIRYmelePlqdrYMDELSGGQRQRAYIAMVLAQDTDYIFLDEPLNNLDMK 169
Cdd:cd03223 73 -----------PYlPLGTL--------REQLIY----P----WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEE 125
|
170 180
....*....|....*....|....*
gi 831463781 170 HAVQMMKVLRklvdELGKTIVMVMH 194
Cdd:cd03223 126 SEDRLYQLLK----ELGITVISVGH 146
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
10-215 |
4.93e-14 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 70.89 E-value: 4.93e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 10 RYGG--KTVIDRVSLSVPRRKLTSLIGPNGAGKS-TLLSMMsRLIPKD-----GGEIWIEGKEIARYRTEEL----AKKI 77
Cdd:PRK15134 16 RQQQtvRTVVNDVSLQIEAGETLALVGESGSGKSvTALSIL-RLLPSPpvvypSGDIRFHGESLLHASEQTLrgvrGNKI 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 78 SILKQS------------NHIAARLTVHELVsfgRFPYSRGRLTR-QDRDYVREAIRYMELEPLQdrymdeLSGGQRQRA 144
Cdd:PRK15134 95 AMIFQEpmvslnplhtleKQLYEVLSLHRGM---RREAARGEILNcLDRVGIRQAAKRLTDYPHQ------LSGGERQRV 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 831463781 145 YIAMVLAQDTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFASCYSDYMVALKDGAVV 215
Cdd:PRK15134 166 MIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV 236
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
14-225 |
7.04e-14 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 70.96 E-value: 7.04e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 14 KTVIDRVSLSVPRRKLTSLIGPNGAGKSTLL-SMMSRL-IPKdgGEIWIEgkeiaryrteelaKKISILKQSNHIAaRLT 91
Cdd:PTZ00243 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLqSLLSQFeISE--GRVWAE-------------RSIAYVPQQAWIM-NAT 736
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 92 VHELVSFgrfpysrgrLTRQDRDYVREAIRYMELEP--------LQDRYMDE---LSGGQRQRAYIAMVLAQDTDYIFLD 160
Cdd:PTZ00243 737 VRGNILF---------FDEEDAARLADAVRVSQLEAdlaqlgggLETEIGEKgvnLSGGQKARVSLARAVYANRDVYLLD 807
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 831463781 161 EPLNNLDmKHavqmmkVLRKLVDEL------GKTIVMVMHDINFAScYSDYMVALKDGAVVCEGDVSSIMR 225
Cdd:PTZ00243 808 DPLSALD-AH------VGERVVEECflgalaGKTRVLATHQVHVVP-RADYVVALGDGRVEFSGSSADFMR 870
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
2-162 |
1.27e-13 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 70.15 E-value: 1.27e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMS--RLIPKdgGEIWIEGKEIA--RYRtEELAKKI 77
Cdd:NF033858 2 ARLEGVSHRYGKTVALDDVSLDIPAGCMVGLIGPDGVGKSSLLSLIAgaRKIQQ--GRVEVLGGDMAdaRHR-RAVCPRI 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 78 SILKQ---SNhIAARLTVHELVSFgrFpysrGRLTRQDRDYvREAiRYMEL------EPLQDRYMDELSGGQRQRAYIAM 148
Cdd:NF033858 79 AYMPQglgKN-LYPTLSVFENLDF--F----GRLFGQDAAE-RRR-RIDELlratglAPFADRPAGKLSGGMKQKLGLCC 149
|
170
....*....|....
gi 831463781 149 VLAQDTDYIFLDEP 162
Cdd:NF033858 150 ALIHDPDLLILDEP 163
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
14-194 |
1.38e-13 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 69.91 E-value: 1.38e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 14 KTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDG--GEIWIEGKEIaryrTEELAKKISILKQSNHIAARLT 91
Cdd:PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNftGTILANNRKP----TKQILKRTGFVTQDDILYPHLT 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 92 VHE---LVSFGRFPYSrgrLTRQDRDYVREAI------RYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYIFLDEP 162
Cdd:PLN03211 157 VREtlvFCSLLRLPKS---LTKQEKILVAESViselglTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEP 233
|
170 180 190
....*....|....*....|....*....|..
gi 831463781 163 LNNLDMKHAVQMMKVLRKLVDElGKTIVMVMH 194
Cdd:PLN03211 234 TSGLDATAAYRLVLTLGSLAQK-GKTIVTSMH 264
|
|
| type_I_sec_HlyB |
TIGR01846 |
type I secretion system ABC transporter, HlyB family; Type I protein secretion is a system in ... |
2-218 |
1.55e-13 |
|
type I secretion system ABC transporter, HlyB family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273831 [Multi-domain] Cd Length: 694 Bit Score: 69.77 E-value: 1.55e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRYGGKT--VIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAKKISI 79
Cdd:TIGR01846 456 ITFENIRFRYAPDSpeVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGV 535
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 80 LKQSNHIAARlTVHELVSFGRfpysrgrlTRQDRDYVREAIRY-------MELEPLQDRYMDE----LSGGQRQRAYIAM 148
Cdd:TIGR01846 536 VLQENVLFSR-SIRDNIALCN--------PGAPFEHVIHAAKLagahdfiSELPQGYNTEVGEkganLSGGQRQRIAIAR 606
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 149 VLAQDTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDelGKTIVMVMHDINfASCYSDYMVALKDGAVVCEG 218
Cdd:TIGR01846 607 ALVGNPRILIFDEATSALDYESEALIMRNMREICR--GRTVIIIAHRLS-TVRACDRIIVLEKGQIAESG 673
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
17-204 |
2.83e-13 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 68.19 E-value: 2.83e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 17 IDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEI-WIeGKEIARYRTEELA---KKISILKQsNHIAA---R 89
Cdd:PRK15079 37 VDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVaWL-GKDLLGMKDDEWRavrSDIQMIFQ-DPLASlnpR 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 90 LTVHELVSFGRFPYsRGRLTRQD-RDYVREAIRYMELEP-LQDRYMDELSGGQRQRAYIAMVLAQDTDYIFLDEPLNNLD 167
Cdd:PRK15079 115 MTIGEIIAEPLRTY-HPKLSRQEvKDRVKAMMLKVGLLPnLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALD 193
|
170 180 190
....*....|....*....|....*....|....*..
gi 831463781 168 MKHAVQMMKVLRKLVDELGKTIVMVMHDINFASCYSD 204
Cdd:PRK15079 194 VSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISD 230
|
|
| SufC |
COG0396 |
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ... |
12-219 |
2.86e-13 |
|
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440165 [Multi-domain] Cd Length: 245 Bit Score: 67.01 E-value: 2.86e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 12 GGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLlsmmSRLI---PK---DGGEIWIEGKEIARYRTEELAKK--------- 76
Cdd:COG0396 11 EGKEILKGVNLTIKPGEVHAIMGPNGSGKSTL----AKVLmghPKyevTSGSILLDGEDILELSPDERARAgiflafqyp 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 77 --ISILKQSN--HIAARLTVHELVSFGRFpysrgrltrqdRDYVREAIRYMELEP-LQDRYMDE-LSGGQRQRAYIAMVL 150
Cdd:COG0396 87 veIPGVSVSNflRTALNARRGEELSAREF-----------LKLLKEKMKELGLDEdFLDRYVNEgFSGGEKKRNEILQML 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 151 AQDTDYIFLDEPLNNLDmkhaVQMMKVLRKLVDEL---GKTIVMVMHdinfascYS---DYMVA-----LKDGAVVCEGD 219
Cdd:COG0396 156 LLEPKLAILDETDSGLD----IDALRIVAEGVNKLrspDRGILIITH-------YQrilDYIKPdfvhvLVDGRIVKSGG 224
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
2-223 |
3.84e-13 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 68.29 E-value: 3.84e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRL--IPKDGGEI-----------WIE-----GK 63
Cdd:TIGR03269 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMdqYEPTSGRIiyhvalcekcgYVErpskvGE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 64 EIARYRTEELAKKISILKQSNHIAARLTVHELVSFGR-FP-YSRGR-----------LTRQDRDYVREAIRYMELEPLQD 130
Cdd:TIGR03269 81 PCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRtFAlYGDDTvldnvlealeeIGYEGKEAVGRAVDLIEMVQLSH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 131 RYMD---ELSGGQRQRAYIAMVLAQDTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFASCYSDYMV 207
Cdd:TIGR03269 161 RITHiarDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAI 240
|
250
....*....|....*.
gi 831463781 208 ALKDGAVVCEGDVSSI 223
Cdd:TIGR03269 241 WLENGEIKEEGTPDEV 256
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
1-194 |
5.51e-13 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 67.91 E-value: 5.51e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQV-LKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPkdggeiWIEGKeIARYRTEELAkkisI 79
Cdd:COG4178 362 ALALEDLtLRTPDGRPLLEDLSLSLKPGERLLITGPSGSGKSTLLRAIAGLWP------YGSGR-IARPAGARVL----F 430
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 80 LKQSNHIAArLTVHELVSFgrfPYSRGRLTRQDrdyVREAIRYMELEPLQDRyMDE-------LSGGQRQRAYIAMVLAQ 152
Cdd:COG4178 431 LPQRPYLPL-GTLREALLY---PATAEAFSDAE---LREALEAVGLGHLAER-LDEeadwdqvLSLGEQQRLAFARLLLH 502
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 831463781 153 DTDYIFLDEPLNNLDMKHAVQMMKVLRklvDEL-GKTIVMVMH 194
Cdd:COG4178 503 KPDWLFLDEATSALDEENEAALYQLLR---EELpGTTVISVGH 542
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
2-194 |
5.62e-13 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 66.14 E-value: 5.62e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRYG------GKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAK 75
Cdd:COG2401 25 ERVAIVLEAFGvelrvvERYVLRDLNLEIEPGEIVLIVGASGSGKSTLLRLLAGALKGTPVAGCVDVPDNQFGREASLID 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 76 KISILKQSNHIAARLTVHELVSfgrfPYSrgrltrqdrdYVReairymeleplqdRYmDELSGGQRQRAYIAMVLAQDTD 155
Cdd:COG2401 105 AIGRKGDFKDAVELLNAVGLSD----AVL----------WLR-------------RF-KELSTGQKFRFRLALLLAERPK 156
|
170 180 190
....*....|....*....|....*....|....*....
gi 831463781 156 YIFLDEPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMH 194
Cdd:COG2401 157 LLVIDEFCSHLDRQTAKRVARNLQKLARRAGITLVVATH 195
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
2-197 |
1.08e-12 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 65.21 E-value: 1.08e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRY--GGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAKKISI 79
Cdd:cd03244 3 IEFKNVSLRYrpNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 80 LKQSNHIAARlTVHE-LVSFGRfpYSRGRLTRQ-DRDYVREAIryMELEPLQDRYMDE----LSGGQRQRAYIAMVLAQD 153
Cdd:cd03244 83 IPQDPVLFSG-TIRSnLDPFGE--YSDEELWQAlERVGLKEFV--ESLPGGLDTVVEEggenLSVGQRQLLCLARALLRK 157
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 831463781 154 TDYIFLDEPLNNLDMKHAVQMMKVLRklvDEL-GKTIVMVMHDIN 197
Cdd:cd03244 158 SKILVLDEATASVDPETDALIQKTIR---EAFkDCTVLTIAHRLD 199
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
1-201 |
1.21e-12 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 64.83 E-value: 1.21e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRtEELAKKISIL 80
Cdd:PRK13538 1 MLEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLLYL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 81 KQSNHIAARLTVHELVSFgrfpYSRGRlTRQDRDYVREAIRYMELEplqdRYMD----ELSGGQRQRAYIA-MVLAQDTD 155
Cdd:PRK13538 80 GHQPGIKTELTALENLRF----YQRLH-GPGDDEALWEALAQVGLA----GFEDvpvrQLSAGQQRRVALArLWLTRAPL 150
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 831463781 156 YIfLDEPLNNLDmKHAVqmmKVLRKLVD---ELGKTIVMVMH-DINFASC 201
Cdd:PRK13538 151 WI-LDEPFTAID-KQGV---ARLEALLAqhaEQGGMVILTTHqDLPVASD 195
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
17-225 |
1.38e-12 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 66.80 E-value: 1.38e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 17 IDRVSLSVPRRKLTSLIGPNGAGKS-TLLSMMsRLIPKDGGEIW--------------------------IEGKEIARYR 69
Cdd:PRK10261 32 VRNLSFSLQRGETLAIVGESGSGKSvTALALM-RLLEQAGGLVQcdkmllrrrsrqvielseqsaaqmrhVRGADMAMIF 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 70 TEELAKKISILKQSNHIAARLTVHELVSfgrfpysRGRLTRQDRDYVrEAIRYMELEPLQDRYMDELSGGQRQRAYIAMV 149
Cdd:PRK10261 111 QEPMTSLNPVFTVGEQIAESIRLHQGAS-------REEAMVEAKRML-DQVRIPEAQTILSRYPHQLSGGMRQRVMIAMA 182
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 831463781 150 LAQDTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGDVSSIMR 225
Cdd:PRK10261 183 LSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQIFH 258
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
3-198 |
1.38e-12 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 66.90 E-value: 1.38e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 3 EVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGK-EIA---RYRTEELAKKis 78
Cdd:PRK11147 321 EMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKlEVAyfdQHRAELDPEK-- 398
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 79 ilkqsnhiaarlTVHELVSFGrfpysrgrltRQD-----RDyvREAIRYmelepLQD------RYM---DELSGGQRQRA 144
Cdd:PRK11147 399 ------------TVMDNLAEG----------KQEvmvngRP--RHVLGY-----LQDflfhpkRAMtpvKALSGGERNRL 449
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 831463781 145 YIAMVLAQDTDYIFLDEPLNNLDmkhaVQMMKVLRKLVDELGKTIVMVMHDINF 198
Cdd:PRK11147 450 LLARLFLKPSNLLILDEPTNDLD----VETLELLEELLDSYQGTVLLVSHDRQF 499
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
20-224 |
1.79e-12 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 65.20 E-value: 1.79e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 20 VSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIA----RYRTEelakKISILKQ--SNHIAARLTVH 93
Cdd:PRK15112 32 LSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHfgdySYRSQ----RIRMIFQdpSTSLNPRQRIS 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 94 ELVSFG-RFPYSRGRLTRQDRdyVREAIRYMELEPLQDRYMDE-LSGGQRQRAYIAMVLAQDTDYIFLDEPLNNLDMKHA 171
Cdd:PRK15112 108 QILDFPlRLNTDLEPEQREKQ--IIETLRQVGLLPDHASYYPHmLAPGQKQRLGLARALILRPKVIIADEALASLDMSMR 185
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 831463781 172 VQMMKVLRKLVDELGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGDVSSIM 224
Cdd:PRK15112 186 SQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVL 238
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
17-196 |
2.41e-12 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 65.37 E-value: 2.41e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 17 IDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELA---KKISILKQSnhiaarltvh 93
Cdd:PRK11308 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKllrQKIQIVFQN---------- 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 94 elvsfgrfPYS----RGR--------------LTRQDR-DYVREAIRYMELEPLQ-DRYMDELSGGQRQRAYIAMVLAQD 153
Cdd:PRK11308 101 --------PYGslnpRKKvgqileepllintsLSAAERrEKALAMMAKVGLRPEHyDRYPHMFSGGQRQRIAIARALMLD 172
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 831463781 154 TDYIFLDEPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDI 196
Cdd:PRK11308 173 PDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDL 215
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
17-213 |
4.62e-12 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 62.73 E-value: 4.62e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 17 IDRVSLSVPRRKLTSLIGPNGAGKSTLLsmmsrlipKDGGEIWIEGKEIARYRTEELAKKISILKQSNHIAARLTvhelv 96
Cdd:cd03238 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLV--------NEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLG----- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 97 sfgrfpysrgrltrqdrdyvreairYMELeplqDRYMDELSGGQRQRAYIAMVLAQD---TDYIFlDEPLNNLDMKHAVQ 173
Cdd:cd03238 78 -------------------------YLTL----GQKLSTLSGGELQRVKLASELFSEppgTLFIL-DEPSTGLHQQDINQ 127
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 831463781 174 MMKVLRKLVDeLGKTIVMVMHDINFaSCYSDYMVALKDGA 213
Cdd:cd03238 128 LLEVIKGLID-LGNTVILIEHNLDV-LSSADWIIDFGPGS 165
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
2-215 |
7.92e-12 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 62.43 E-value: 7.92e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRYGGK--TVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAKKISI 79
Cdd:cd03369 7 IEVENLSVRYAPDlpPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTI 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 80 LKQSNHIAARLTVHELVSFGRFpysrgrltrqDRDYVREAIRYMEleplqdrYMDELSGGQRQRAYIAMVLAQDTDYIFL 159
Cdd:cd03369 87 IPQDPTLFSGTIRSNLDPFDEY----------SDEEIYGALRVSE-------GGLNLSQGQRQLLCLARALLKRPRVLVL 149
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 831463781 160 DEPLNNLDMKHAVQMMKVLRKLVDelGKTIVMVMHDINFASCYsDYMVALKDGAVV 215
Cdd:cd03369 150 DEATASIDYATDALIQKTIREEFT--NSTILTIAHRLRTIIDY-DKILVMDAGEVK 202
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
2-218 |
1.10e-11 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 63.97 E-value: 1.10e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRY-GGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAKKISIL 80
Cdd:PRK10790 341 IDIDNVSFAYrDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMV 420
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 81 KQSNHIAARlTVHELVSFGRfpysrgrltRQDRDYVREAIRYMELEPLQdRYMDE------------LSGGQRQRAYIAM 148
Cdd:PRK10790 421 QQDPVVLAD-TFLANVTLGR---------DISEEQVWQALETVQLAELA-RSLPDglytplgeqgnnLSVGQKQLLALAR 489
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 831463781 149 VLAQDTDYIFLDEPLNNLD--MKHAVQmmKVLRKLVDElgKTIVMVMHDINfASCYSDYMVALKDGAVVCEG 218
Cdd:PRK10790 490 VLVQTPQILILDEATANIDsgTEQAIQ--QALAAVREH--TTLVVIAHRLS-TIVEADTILVLHRGQAVEQG 556
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
32-196 |
3.05e-11 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 62.43 E-value: 3.05e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 32 LIGPNGAGKS-TLLSMMSrLIPKDG---GEIWIEGKEIARYRTEEL----AKKISILKQ------------SNHIAARLT 91
Cdd:PRK09473 47 IVGESGSGKSqTAFALMG-LLAANGrigGSATFNGREILNLPEKELnklrAEQISMIFQdpmtslnpymrvGEQLMEVLM 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 92 VHELVSFGR-FPYSRGRLtrqdrDYVR--EAIRYMELEPlqdrymDELSGGQRQRAYIAMVLAQDTDYIFLDEPLNNLDM 168
Cdd:PRK09473 126 LHKGMSKAEaFEESVRML-----DAVKmpEARKRMKMYP------HEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDV 194
|
170 180
....*....|....*....|....*...
gi 831463781 169 KHAVQMMKVLRKLVDELGKTIVMVMHDI 196
Cdd:PRK09473 195 TVQAQIMTLLNELKREFNTAIIMITHDL 222
|
|
| PRK10789 |
PRK10789 |
SmdA family multidrug ABC transporter permease/ATP-binding protein; |
14-219 |
3.53e-11 |
|
SmdA family multidrug ABC transporter permease/ATP-binding protein;
Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 62.42 E-value: 3.53e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 14 KTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAKKISILKQSNHIAARlTVH 93
Cdd:PRK10789 328 HPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSD-TVA 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 94 ELVSFGRfPYSrgrlTRQDRDYV-REAIRYMELEPLQDRYMDE-------LSGGQRQRAYIAMVLAQDTDYIFLDEPLNN 165
Cdd:PRK10789 407 NNIALGR-PDA----TQQEIEHVaRLASVHDDILRLPQGYDTEvgergvmLSGGQKQRISIARALLLNAEILILDDALSA 481
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 831463781 166 LDMKHAVQMMKVLRKLVDelGKTIVMVMHDINfASCYSDYMVALKDGAVVCEGD 219
Cdd:PRK10789 482 VDGRTEHQILHNLRQWGE--GRTVIISAHRLS-ALTEASEILVMQHGHIAQRGN 532
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
9-215 |
3.95e-11 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 60.35 E-value: 3.95e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 9 KRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDG---GEIW---IEGKEIARYRTEELakkISILKQ 82
Cdd:cd03233 15 KGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVsveGDIHyngIPYKEFAEKYPGEI---IYVSEE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 83 SNHIAArLTVHELVSFgrfpysrgRLTRQDRDYVREairymeleplqdrymdeLSGGQRQRAYIAMVLAQDTDYIFLDEP 162
Cdd:cd03233 92 DVHFPT-LTVRETLDF--------ALRCKGNEFVRG-----------------ISGGERKRVSIAEALVSRASVLCWDNS 145
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 831463781 163 LNNLDMKHAVQMMKVLRKLVDELGKTivmvmhdiNFASCYS---------DYMVALKDGAVV 215
Cdd:cd03233 146 TRGLDSSTALEILKCIRTMADVLKTT--------TFVSLYQasdeiydlfDKVLVLYEGRQI 199
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
2-196 |
5.24e-11 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 62.35 E-value: 5.24e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRYGGKT---VIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRL---------------------------- 50
Cdd:PTZ00265 1166 IEIMDVNFRYISRPnvpIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFydlkndhhivfknehtndmtneqdyqgd 1245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 51 --------------------------IPKDGGEIWIEGKEIARYRTEELAKKISILKQSNhIAARLTVHELVSFGRfpys 104
Cdd:PTZ00265 1246 eeqnvgmknvnefsltkeggsgedstVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEP-MLFNMSIYENIKFGK---- 1320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 105 rGRLTRQDrdyVREAIRYMEL----EPLQDRY-------MDELSGGQRQRAYIAMVLAQDTDYIFLDEPLNNLDMKHAVQ 173
Cdd:PTZ00265 1321 -EDATRED---VKRACKFAAIdefiESLPNKYdtnvgpyGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKL 1396
|
250 260
....*....|....*....|...
gi 831463781 174 MMKVLRKLVDELGKTIVMVMHDI 196
Cdd:PTZ00265 1397 IEKTIVDIKDKADKTIITIAHRI 1419
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
1-167 |
7.70e-11 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 59.58 E-value: 7.70e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTeELAKKISIL 80
Cdd:PRK13540 1 MLDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLC-TYQKQLCFV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 81 KQSNHIAARLTVHELVSFGrFPYSRGRLTrqdrdyVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYIFLD 160
Cdd:PRK13540 80 GHRSGINPYLTLRENCLYD-IHFSPGAVG------ITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLD 152
|
....*..
gi 831463781 161 EPLNNLD 167
Cdd:PRK13540 153 EPLVALD 159
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
1-213 |
1.11e-10 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 59.76 E-value: 1.11e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRY-----GGKT--VIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWiegkeiarYRTEEl 73
Cdd:COG4778 4 LLEVENLSKTFtlhlqGGKRlpVLDGVSFSVAAGECVALTGPSGAGKSTLLKCIYGNYLPDSGSIL--------VRHDG- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 74 aKKISILKQSNHIAARLTVHEL--VS-FGRF-P------------YSRGRLTRQDRDYVREAIRYMEL-EPLQDRYMDEL 136
Cdd:COG4778 75 -GWVDLAQASPREILALRRRTIgyVSqFLRViPrvsaldvvaeplLERGVDREEARARARELLARLNLpERLWDLPPATF 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 137 SGGQRQRAYIAMVLAQDTDYIFLDEPLNNLDmkhAVQMMKVLRkLVDEL---GKTIVMVMHDINFASCYSDYMVALKDGA 213
Cdd:COG4778 154 SGGEQQRVNIARGFIADPPLLLLDEPTASLD---AANRAVVVE-LIEEAkarGTAIIGIFHDEEVREAVADRVVDVTPFS 229
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
5-198 |
3.76e-10 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 59.56 E-value: 3.76e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 5 KQVLKRY-GGKTVIDRVSLS-VPRRKLtSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIegkeiaryrteELAKKISILKQ 82
Cdd:TIGR03719 8 NRVSKVVpPKKEILKDISLSfFPGAKI-GVLGLNGAGKSTLLRIMAGVDKDFNGEARP-----------QPGIKVGYLPQ 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 83 SNHIAARLTVHELVSFG---------RFPYSRGRLTRQDRDYVREAIRYMELEPLQD------------RYMD------- 134
Cdd:TIGR03719 76 EPQLDPTKTVRENVEEGvaeikdaldRFNEISAKYAEPDADFDKLAAEQAELQEIIDaadawdldsqleIAMDalrcppw 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 831463781 135 -----ELSGGQRQRAYIAMVLAQDTDYIFLDEPLNNLDMKHAVQMMKVLRklvdELGKTIVMVMHDINF 198
Cdd:TIGR03719 156 dadvtKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLERHLQ----EYPGTVVAVTHDRYF 220
|
|
| sufC |
TIGR01978 |
FeS assembly ATPase SufC; SufC is part of the SUF system, shown in E. coli to consist of six ... |
12-221 |
4.77e-10 |
|
FeS assembly ATPase SufC; SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic () or associated with the membrane (). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]
Pssm-ID: 273907 [Multi-domain] Cd Length: 243 Bit Score: 58.04 E-value: 4.77e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 12 GGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLS-MMSRliPK---DGGEIWIEGKEIARYRTEELAKK----------- 76
Cdd:TIGR01978 11 EDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKtIAGH--PSyevTSGTILFKGQDLLELEPDERARAglflafqypee 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 77 ISILKQSNHIAARLTVHelvsfgRFPYSRGRLTRQD-RDYVREAIRYMEL-EPLQDRYMDE-LSGGQRQRAYIAMVLAQD 153
Cdd:TIGR01978 89 IPGVSNLEFLRSALNAR------RSARGEEPLDLLDfEKLLKEKLALLDMdEEFLNRSVNEgFSGGEKKRNEILQMALLE 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 831463781 154 TDYIFLDEPLNNLDmkhaVQMMKVLRKLVDEL---GKTIVMVMHDIN-FASCYSDYMVALKDGAVVCEGDVS 221
Cdd:TIGR01978 163 PKLAILDEIDSGLD----IDALKIVAEGINRLrepDRSFLIITHYQRlLNYIKPDYVHVLLDGRIVKSGDVE 230
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
11-214 |
7.06e-10 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 58.64 E-value: 7.06e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 11 YGGKTVIDRVSLS-VPRRKLtSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIeGKEI-----ARYRTEELAKKISILKQSN 84
Cdd:PRK10636 322 YGDRIILDSIKLNlVPGSRI-GLLGRNGAGKSTLIKLLAGELAPVSGEIGL-AKGIklgyfAQHQLEFLRADESPLQHLA 399
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 85 HIAARLTVHELVSF-GRFPYSRGRLTRQDRDYvreairymeleplqdrymdelSGGQRQRAYIAMVLAQDTDYIFLDEPL 163
Cdd:PRK10636 400 RLAPQELEQKLRDYlGGFGFQGDKVTEETRRF---------------------SGGEKARLVLALIVWQRPNLLLLDEPT 458
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 831463781 164 NNLDMkhavQMMKVLRKLVDELGKTIVMVMHDINFASCYSDYMVALKDGAV 214
Cdd:PRK10636 459 NHLDL----DMRQALTEALIDFEGALVVVSHDRHLLRSTTDDLYLVHDGKV 505
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
20-226 |
8.18e-10 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 58.98 E-value: 8.18e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 20 VSLSVPRRKLTSLIGPNGAGKSTLLS-MMSRLIPKDGGEIWIEGkeiaryrteelakKISILKQSNHIaARLTVHELVSF 98
Cdd:PLN03130 636 INLDVPVGSLVAIVGSTGEGKTSLISaMLGELPPRSDASVVIRG-------------TVAYVPQVSWI-FNATVRDNILF 701
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 99 GRfPYSRGRLTRQDRdyVREAIRYMELEPLQD------RYMDeLSGGQRQRAYIAMVLAQDTD-YIFlDEPLNNLDMKHA 171
Cdd:PLN03130 702 GS-PFDPERYERAID--VTALQHDLDLLPGGDlteigeRGVN-ISGGQKQRVSMARAVYSNSDvYIF-DDPLSALDAHVG 776
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 831463781 172 VQMM-KVLRklvDEL-GKTIVMVMHDINFAScYSDYMVALKDGAVVCEGDVSSIMRD 226
Cdd:PLN03130 777 RQVFdKCIK---DELrGKTRVLVTNQLHFLS-QVDRIILVHEGMIKEEGTYEELSNN 829
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
20-214 |
1.06e-09 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 58.42 E-value: 1.06e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 20 VSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKeiaryrteelakkISILKQSNHIAaRLTVHELVSFG 99
Cdd:TIGR00957 657 ITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGS-------------VAYVPQQAWIQ-NDSLRENILFG 722
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 100 RfpysrgRLTRQDRDYVREA---IRYMELEPLQDRY-MDE----LSGGQRQRAYIAMVLAQDTDYIFLDEPLNNLD---- 167
Cdd:TIGR00957 723 K------ALNEKYYQQVLEAcalLPDLEILPSGDRTeIGEkgvnLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDahvg 796
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 831463781 168 ---MKHAVQMMKVLRklvdelGKTIVMVMHDINFAScYSDYMVALKDGAV 214
Cdd:TIGR00957 797 khiFEHVIGPEGVLK------NKTRILVTHGISYLP-QVDVIIVMSGGKI 839
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
32-198 |
1.26e-09 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 58.04 E-value: 1.26e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 32 LIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEI-AR---------------YRTEELAKKISILKQSNHIAARLTVHel 95
Cdd:PRK11147 34 LVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIvARlqqdpprnvegtvydFVAEGIEEQAEYLKRYHDISHLVETD-- 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 96 vsfgrfpYSRGRLTRQDR--------------DYVREAIRYMELEPlqDRYMDELSGGQRQRAYIAMVLAQDTDYIFLDE 161
Cdd:PRK11147 112 -------PSEKNLNELAKlqeqldhhnlwqleNRINEVLAQLGLDP--DAALSSLSGGWLRKAALGRALVSNPDVLLLDE 182
|
170 180 190
....*....|....*....|....*....|....*..
gi 831463781 162 PLNNLDmkhaVQMMKVLRKLVDELGKTIVMVMHDINF 198
Cdd:PRK11147 183 PTNHLD----IETIEWLEGFLKTFQGSIIFISHDRSF 215
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
31-196 |
2.37e-09 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 57.17 E-value: 2.37e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 31 SLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEI---ARYRTEELAKKISILKQSNH------------IAARLTVHEL 95
Cdd:PRK10261 354 SLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIdtlSPGKLQALRRDIQFIFQDPYasldprqtvgdsIMEPLRVHGL 433
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 96 VSfGRFPYSRgrltrqdrdyVREAIRYMELEPLQD-RYMDELSGGQRQRAYIAMVLAQDTDYIFLDEPLNNLDMKHAVQM 174
Cdd:PRK10261 434 LP-GKAAAAR----------VAWLLERVGLLPEHAwRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQI 502
|
170 180
....*....|....*....|..
gi 831463781 175 MKVLRKLVDELGKTIVMVMHDI 196
Cdd:PRK10261 503 INLLLDLQRDFGIAYLFISHDM 524
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
1-215 |
5.51e-09 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 56.14 E-value: 5.51e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRY--GGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAKKIS 78
Cdd:PLN03232 1234 SIKFEDVHLRYrpGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLS 1313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 79 ILKQSNhiaarLTVHELVSFGRFPYSR----GRLTRQDRDYVREAIRY--MELEPLQDRYMDELSGGQRQRAYIAMVLAQ 152
Cdd:PLN03232 1314 IIPQSP-----VLFSGTVRFNIDPFSEhndaDLWEALERAHIKDVIDRnpFGLDAEVSEGGENFSVGQRQLLSLARALLR 1388
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 831463781 153 DTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDELgkTIVMVMHDIN-FASCysDYMVALKDGAVV 215
Cdd:PLN03232 1389 RSKILVLDEATASVDVRTDSLIQRTIREEFKSC--TMLVIAHRLNtIIDC--DKILVLSSGQVL 1448
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
1-223 |
6.83e-09 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 56.18 E-value: 6.83e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRYGGKT--VIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARyRTEELAKKIS 78
Cdd:TIGR01257 1937 ILRLNELTKVYSGTSspAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQNMG 2015
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 79 ILKQSNHIAARLTVHE-LVSFGRFpysRGRLTRQDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYI 157
Cdd:TIGR01257 2016 YCPQFDAIDDLLTGREhLYLYARL---RGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLV 2092
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 831463781 158 FLDEPLNNLDMKHAVQMMKVLRKLVDElGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGDVSSI 223
Cdd:TIGR01257 2093 LLDEPTTGMDPQARRMLWNTIVSIIRE-GRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHL 2157
|
|
| ABC_RNaseL_inhibitor |
cd03222 |
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ... |
135-204 |
8.66e-09 |
|
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213189 [Multi-domain] Cd Length: 177 Bit Score: 53.73 E-value: 8.66e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 135 ELSGGQRQRAYIAMVLAQDTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFASCYSD 204
Cdd:cd03222 71 DLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSD 140
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
2-215 |
1.15e-08 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 54.90 E-value: 1.15e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEI-WIEGKEIARY---RTEELAKKI 77
Cdd:PRK15064 320 LEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVkWSENANIGYYaqdHAYDFENDL 399
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 78 SIL------KQSNH--IAARLTVhelvsfGRFPYSrgrltrqdRDYVREAIRYmeleplqdrymdeLSGGQRQRAYIAMV 149
Cdd:PRK15064 400 TLFdwmsqwRQEGDdeQAVRGTL------GRLLFS--------QDDIKKSVKV-------------LSGGEKGRMLFGKL 452
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 831463781 150 LAQDTDYIFLDEPLNNLDMkhavQMMKVLRKLVDELGKTIVMVMHDINFASCYSDYMVALKDGAVV 215
Cdd:PRK15064 453 MMQKPNVLVMDEPTNHMDM----ESIESLNMALEKYEGTLIFVSHDREFVSSLATRIIEITPDGVV 514
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
3-238 |
1.45e-08 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 54.80 E-value: 1.45e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 3 EVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKdG---GEIWIEGkEIARYRT----EELAk 75
Cdd:NF040905 3 EMRGITKTFPGVKALDDVNLSVREGEIHALCGENGAGKSTLMKVLSGVYPH-GsyeGEILFDG-EVCRFKDirdsEALG- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 76 kISILKQSNHIAARLTVHELVSFGRFPYSRGRLtrqDRDYV-REAIRYME---LEPLQDRYMDELSGGQRQRAYIAMVLA 151
Cdd:NF040905 80 -IVIIHQELALIPYLSIAENIFLGNERAKRGVI---DWNETnRRARELLAkvgLDESPDTLVTDIGVGKQQLVEIAKALS 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 152 QDTDYIFLDEP---LNNLDMKHAVQMMKVLRklvdELGKTIVMVMHDINFASCYSDYMVALKDGAVVC-----EGDVSS- 222
Cdd:NF040905 156 KDVKLLILDEPtaaLNEEDSAALLDLLLELK----AQGITSIIISHKLNEIRRVADSITVLRDGRTIEtldcrADEVTEd 231
|
250
....*....|....*..
gi 831463781 223 -IMRDEVLRgiyDLDVR 238
Cdd:NF040905 232 rIIRGMVGR---DLEDR 245
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
3-192 |
2.91e-08 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 53.87 E-value: 2.91e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 3 EVKQVlkryGGKTVIDRVSLSVprRK-----LTSLIGpngAGKSTLLSMMSRLIPKDGGEIWIEGKEIaRYRT--EELAK 75
Cdd:COG1129 258 EVEGL----SVGGVVRDVSFSV--RAgeilgIAGLVG---AGRTELARALFGADPADSGEIRLDGKPV-RIRSprDAIRA 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 76 KIS-----------ILKQSnhIAARLTVHELVSFGRFPY-SRGRLTRQDRDYVRE-AIRYmelePLQDRYMDELSGGQRQ 142
Cdd:COG1129 328 GIAyvpedrkgeglVLDLS--IRENITLASLDRLSRGGLlDRRRERALAEEYIKRlRIKT----PSPEQPVGNLSGGNQQ 401
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 831463781 143 RAYIAMVLAQDTDYIFLDEPLNNLDM--KHAVQmmKVLRKLVDElGKTIVMV 192
Cdd:COG1129 402 KVVLAKWLATDPKVLILDEPTRGIDVgaKAEIY--RLIRELAAE-GKAVIVI 450
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
14-199 |
3.00e-08 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 51.59 E-value: 3.00e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 14 KTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLsmmsrlipkdggeiwiegKEIAryrteelakkisilkqsnhiaarltvh 93
Cdd:cd03227 8 PSYFVPNDVTFGEGSLTIITGPNGSGKSTIL------------------DAIG--------------------------- 42
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 94 eLVSFGRFPYSRGRLTRQDRDYVReairYMELEPLQDRymDELSGGQRQRAYIAMVLA----QDTDYIFLDEPLNNLDMK 169
Cdd:cd03227 43 -LALGGAQSATRRRSGVKAGCIVA----AVSAELIFTR--LQLSGGEKELSALALILAlaslKPRPLYILDEIDRGLDPR 115
|
170 180 190
....*....|....*....|....*....|
gi 831463781 170 HAVQMMKVLRKLVDELGKTIVmVMHDINFA 199
Cdd:cd03227 116 DGQALAEAILEHLVKGAQVIV-ITHLPELA 144
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
34-168 |
3.78e-08 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 52.16 E-value: 3.78e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 34 GPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIaryRTEELAKKISILKQSNHIAARLTVHELVSFgrfpySRGRLTRQDR 113
Cdd:PRK13543 44 GDNGAGKTTLLRVLAGLLHVESGQIQIDGKTA---TRGDRSRFMAYLGHLPGLKADLSTLENLHF-----LCGLHGRRAK 115
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 831463781 114 DYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYIFLDEPLNNLDM 168
Cdd:PRK13543 116 QMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDL 170
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
2-194 |
4.18e-08 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 53.43 E-value: 4.18e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRYGGKT-VIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAKKISIL 80
Cdd:PRK13657 335 VEFDDVSFSYDNSRqGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVV 414
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 81 KQSNHIAARlTVHELVSFGRFPYSRGRLTR-----QDRDYV-REAIRYmeleplqDRYMDE----LSGGQRQRAYIAMVL 150
Cdd:PRK13657 415 FQDAGLFNR-SIEDNIRVGRPDATDEEMRAaaeraQAHDFIeRKPDGY-------DTVVGErgrqLSGGERQRLAIARAL 486
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 831463781 151 AQDTDYIFLDEPLNNLDmkhAVQMMKVLRKLvDEL--GKTIVMVMH 194
Cdd:PRK13657 487 LKDPPILILDEATSALD---VETEAKVKAAL-DELmkGRTTFIIAH 528
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
14-229 |
5.36e-08 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 53.44 E-value: 5.36e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 14 KTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLS-MMSRLIPKDGGEIWIEGkeiaryrTEELAKKISILKQSnhiaarlTV 92
Cdd:PLN03232 630 KPTLSDINLEIPVGSLVAIVGGTGEGKTSLISaMLGELSHAETSSVVIRG-------SVAYVPQVSWIFNA-------TV 695
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 93 HELVSFGrfpySRGRLTRQDRDYVREAIRY-MELEPLQDRY-MDE----LSGGQRQRAYIAMVLAQDTDYIFLDEPLNNL 166
Cdd:PLN03232 696 RENILFG----SDFESERYWRAIDVTALQHdLDLLPGRDLTeIGErgvnISGGQKQRVSMARAVYSNSDIYIFDDPLSAL 771
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 831463781 167 DMKHAVQMMKVLRKlvDEL-GKTIVMVMHDINFAScYSDYMVALKDGAVVCEGDVSSIMRDEVL 229
Cdd:PLN03232 772 DAHVAHQVFDSCMK--DELkGKTRVLVTNQLHFLP-LMDRIILVSEGMIKEEGTFAELSKSGSL 832
|
|
| ABC_UvrA_I |
cd03270 |
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair ... |
20-218 |
6.94e-08 |
|
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213237 [Multi-domain] Cd Length: 226 Bit Score: 51.49 E-value: 6.94e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 20 VSLSVPRRKLTSLIGPNGAGKSTL----------------LSMMSR----LIPKDGGEiWIEGkeiaryrteeLAKKISI 79
Cdd:cd03270 14 VDVDIPRNKLVVITGVSGSGKSSLafdtiyaegqrryvesLSAYARqflgQMDKPDVD-SIEG----------LSPAIAI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 80 LKQSNHIAARLTV---HELVSFGRFPYSRGRLTRQDRDYVREAIRYMELeplqDRYMDELSGGQRQRAYIAMVLAQDTD- 155
Cdd:cd03270 83 DQKTTSRNPRSTVgtvTEIYDYLRLLFARVGIRERLGFLVDVGLGYLTL----SRSAPTLSGGEAQRIRLATQIGSGLTg 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 831463781 156 --YIfLDEPLNNLDMKHAVQMMKVLRKLVDeLGKTIVMVMHD---INFAscysDYMVALKDGA------VVCEG 218
Cdd:cd03270 159 vlYV-LDEPSIGLHPRDNDRLIETLKRLRD-LGNTVLVVEHDedtIRAA----DHVIDIGPGAgvhggeIVAQG 226
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
10-167 |
1.48e-07 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 52.09 E-value: 1.48e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 10 RYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAKKISILKQSnhiaar 89
Cdd:PTZ00243 1319 REGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQD------ 1392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 90 ltvhelvsfgrfPYSRGRLTRQDRDYVREAI-----RYMELEPLQDRYMDELSG--------------GQRQRAYIA-MV 149
Cdd:PTZ00243 1393 ------------PVLFDGTVRQNVDPFLEASsaevwAALELVGLRERVASESEGidsrvleggsnysvGQRQLMCMArAL 1460
|
170
....*....|....*...
gi 831463781 150 LAQDTDYIFLDEPLNNLD 167
Cdd:PTZ00243 1461 LKKGSGFILMDEATANID 1478
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
22-228 |
1.49e-07 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 51.55 E-value: 1.49e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 22 LSVPRRKLTS-----LIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAKKISILKQSNHiaarltvHELV 96
Cdd:PRK10938 19 LQLPSLTLNAgdswaFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNN-------TDML 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 97 SFGrfPYSRGRLTRQD-RDYVREAIRYMEL------EPLQDRYMDELSGGQRQRAYIAMVLAQDTDYIFLDEPLNNLDMK 169
Cdd:PRK10938 92 SPG--EDDTGRTTAEIiQDEVKDPARCEQLaqqfgiTALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVA 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 831463781 170 HAVQMMKVLRKLVDElGKTIVMVM---HDI-NFAscysDYMVALKDGAVVCEGDVSSIMRDEV 228
Cdd:PRK10938 170 SRQQLAELLASLHQS-GITLVLVLnrfDEIpDFV----QFAGVLADCTLAETGEREEILQQAL 227
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
5-195 |
1.69e-07 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 51.66 E-value: 1.69e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 5 KQVLKRYGG-KTVIDRVSLS-VPRRKLtSLIGPNGAGKSTLLSMMSRLIPKDGGEIWiegkeiaryrteeLAK--KISIL 80
Cdd:PRK11819 10 NRVSKVVPPkKQILKDISLSfFPGAKI-GVLGLNGAGKSTLLRIMAGVDKEFEGEAR-------------PAPgiKVGYL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 81 KQSNHIAARLTVHELVSFGrFPYSRGRLTRQDRDYVR--EAIRYM-----ELEPLQD---------------RYMD---- 134
Cdd:PRK11819 76 PQEPQLDPEKTVRENVEEG-VAEVKAALDRFNEIYAAyaEPDADFdalaaEQGELQEiidaadawdldsqleIAMDalrc 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 831463781 135 --------ELSGGQRQRAYIAMVLAQDTDYIFLDEPLNNLDMKhAVQMMKvlRKLVDELGkTIVMVMHD 195
Cdd:PRK11819 155 ppwdakvtKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAE-SVAWLE--QFLHDYPG-TVVAVTHD 219
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
20-195 |
3.30e-07 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 50.74 E-value: 3.30e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 20 VSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAKkisilkqsnHIAARLTVHELVSfg 99
Cdd:PRK10522 342 INLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRK---------LFSAVFTDFHLFD-- 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 100 rfpysrgRLTRQDRDYVREAIRYMELEPLQ---------DRYMD-ELSGGQRQRAYIAMVLAQDTDYIFLDEPLNNLDMK 169
Cdd:PRK10522 411 -------QLLGPEGKPANPALVEKWLERLKmahkleledGRISNlKLSKGQKKRLALLLALAEERDILLLDEWAADQDPH 483
|
170 180
....*....|....*....|....*.
gi 831463781 170 HAVQMMKVLRKLVDELGKTIVMVMHD 195
Cdd:PRK10522 484 FRREFYQVLLPLLQEMGKTIFAISHD 509
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
2-223 |
3.83e-07 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 50.12 E-value: 3.83e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWiegkeiaRYRTEELAKKISILK 81
Cdd:NF000106 14 VEVRGLVKHFGEVKAVDGVDLDVREGTVLGVLGP*GAA**RGALPAHV*GPDAGRRPW-------RF*TWCANRRALRRT 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 82 QSNHIAARLTVHELVSFGRFPYSRGR---LTRQD-RDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYI 157
Cdd:NF000106 87 IG*HRPVR*GRRESFSGRENLYMIGR*ldLSRKDaRARADELLERFSLTEAAGRAAAKYSGGMRRRLDLAASMIGRPAVL 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 831463781 158 FLDEPLNNLDMKHAVQMMKVLRKLVDElGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGDVSSI 223
Cdd:NF000106 167 YLDEPTTGLDPRTRNEVWDEVRSMVRD-GATVLLTTQYMEEAEQLAHELTVIDRGRVIADGKVDEL 231
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
17-214 |
5.42e-07 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 49.82 E-value: 5.42e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 17 IDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIP-KDGGEIWIEGKEIA-RYRTEELAKKISIL---KQSNHIAARLT 91
Cdd:TIGR02633 276 VDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPgKFEGNVFINGKPVDiRNPAQAIRAGIAMVpedRKRHGIVPILG 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 92 VHE---LVSFGRFPYsRGRL-TRQDRDYVREAIRYMELEPLQ-DRYMDELSGGQRQRAYIAMVLAQDTDYIFLDEPLNNL 166
Cdd:TIGR02633 356 VGKnitLSVLKSFCF-KMRIdAAAELQIIGSAIQRLKVKTASpFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGV 434
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 831463781 167 DMKHAVQMMKVLRKLVDElGKTIVMVMHDINFASCYSDYMVALKDGAV 214
Cdd:TIGR02633 435 DVGAKYEIYKLINQLAQE-GVAIIVVSSELAEVLGLSDRVLVIGEGKL 481
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
13-192 |
6.55e-07 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 48.20 E-value: 6.55e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 13 GKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEE-LAKKISIL---KQSNHIAA 88
Cdd:cd03215 12 VKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDaIRAGIAYVpedRKREGLVL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 89 RLTVHELVSFGRFpysrgrltrqdrdyvreairymeleplqdrymdeLSGGQRQRAYIAMVLAQDTDYIFLDEPLNNLDM 168
Cdd:cd03215 92 DLSVAENIALSSL----------------------------------LSGGNQQKVVLARWLARDPRVLILDEPTRGVDV 137
|
170 180
....*....|....*....|....
gi 831463781 169 KHAVQMMKVLRKLVDElGKTIVMV 192
Cdd:cd03215 138 GAKAEIYRLIRELADA-GKAVLLI 160
|
|
| SbcC |
COG0419 |
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]; |
8-181 |
9.38e-07 |
|
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
Pssm-ID: 440188 [Multi-domain] Cd Length: 204 Bit Score: 48.08 E-value: 9.38e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 8 LKRYGGKTVIDrvslsvPRRKLTSLIGPNGAGKSTLL---------------SMMSRLIPKDGGEIWIE------GK--- 63
Cdd:COG0419 10 FRSYRDTETID------FDDGLNLIVGPNGAGKSTILeairyalygkarsrsKLRSDLINVGSEEASVElefehgGKryr 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 64 ---------EIARYRTEELAKKIS-ILKQSNHIAARLTVHELVSfgrfpYSRGRLTRQDRDYVREAIRYMELEPLQDryM 133
Cdd:COG0419 84 ierrqgefaEFLEAKPSERKEALKrLLGLEIYEELKERLKELEE-----ALESALEELAELQKLKQEILAQLSGLDP--I 156
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 831463781 134 DELSGGQRQRAYIAMVLAqdtdyIFLDepLNNLDMKHAVQMMKVLRKL 181
Cdd:COG0419 157 ETLSGGERLRLALADLLS-----LILD--FGSLDEERLERLLDALEEL 197
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
130-225 |
9.56e-07 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 48.97 E-value: 9.56e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 130 DRYMDELSGGQRQRAYIAMVLAQDTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFASCYSDYMVAL 209
Cdd:PRK11022 148 DVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVM 227
|
90
....*....|....*.
gi 831463781 210 KDGAVVCEGDVSSIMR 225
Cdd:PRK11022 228 YAGQVVETGKAHDIFR 243
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
9-162 |
1.02e-06 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 49.35 E-value: 1.02e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 9 KRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIAryrteelAKKISILK------Q 82
Cdd:NF033858 274 MRFGDFTAVDHVSFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEAWLFGQPVD-------AGDIATRRrvgymsQ 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 83 SNHIAARLTVHE-LVSFGR-FpysrgRLTRQDRD-YVREAIRYMELEPLQDRYMDELSGGQRQR---AyIAMVlaQDTDY 156
Cdd:NF033858 347 AFSLYGELTVRQnLELHARlF-----HLPAAEIAaRVAEMLERFDLADVADALPDSLPLGIRQRlslA-VAVI--HKPEL 418
|
....*.
gi 831463781 157 IFLDEP 162
Cdd:NF033858 419 LILDEP 424
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
2-167 |
1.06e-06 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 49.24 E-value: 1.06e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSmmsrLIPKD-----------------GGE-IWiegk 63
Cdd:PRK10938 261 IVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLS----LITGDhpqgysndltlfgrrrgSGEtIW---- 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 64 eiaryrteELAKKISILKQSNHIAARL--TVHELVSFGRFPySRGrLTRQDRDYVRE-AIRYMELEPLQDRYMD----EL 136
Cdd:PRK10938 333 --------DIKKHIGYVSSSLHLDYRVstSVRNVILSGFFD-SIG-IYQAVSDRQQKlAQQWLDILGIDKRTADapfhSL 402
|
170 180 190
....*....|....*....|....*....|.
gi 831463781 137 SGGQRQRAYIAMVLAQDTDYIFLDEPLNNLD 167
Cdd:PRK10938 403 SWGQQRLALIVRALVKHPTLLILDEPLQGLD 433
|
|
| NHLM_micro_ABC2 |
TIGR03797 |
NHLM bacteriocin system ABC transporter, ATP-binding protein; Members of this protein family ... |
2-167 |
1.08e-06 |
|
NHLM bacteriocin system ABC transporter, ATP-binding protein; Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes. [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]
Pssm-ID: 274789 [Multi-domain] Cd Length: 686 Bit Score: 49.18 E-value: 1.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRYG--GKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLsmmsRLI-----PKDGGeIWIEGKEIARYRTEELA 74
Cdd:TIGR03797 452 IEVDRVTFRYRpdGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLL----RLLlgfetPESGS-VFYDGQDLAGLDVQAVR 526
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 75 KKISILKQSNHI-----------AARLTVHElvsfgrfpysrgrltrqdrdyVREAIRYMELEplQD-RYM--------D 134
Cdd:TIGR03797 527 RQLGVVLQNGRLmsgsifeniagGAPLTLDE---------------------AWEAARMAGLA--EDiRAMpmgmhtviS 583
|
170 180 190
....*....|....*....|....*....|....*..
gi 831463781 135 E----LSGGQRQRAYIAMVLAQDTDYIFLDEPLNNLD 167
Cdd:TIGR03797 584 EgggtLSGGQRQRLLIARALVRKPRILLFDEATSALD 620
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
3-217 |
1.21e-06 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 48.75 E-value: 1.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 3 EVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIaRYRTEELAKKISIL-- 80
Cdd:PRK11288 255 EVRLRLDGLKGPGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPI-DIRSPRDAIRAGIMlc 333
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 81 ---KQSNHIAARLTVHELVSFG-RFPYSRGRL---TRQDRDYVREAIRYMELE-PLQDRYMDELSGGQRQRAYIAMVLAQ 152
Cdd:PRK11288 334 pedRKAEGIIPVHSVADNINISaRRHHLRAGClinNRWEAENADRFIRSLNIKtPSREQLIMNLSGGNQQKAILGRWLSE 413
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 831463781 153 DTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDElGKTIVMVMHDINFASCYSDYMVALKDGAVVCE 217
Cdd:PRK11288 414 DMKVILLDEPTRGIDVGAKHEIYNVIYELAAQ-GVAVLFVSSDLPEVLGVADRIVVMREGRIAGE 477
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
10-198 |
1.68e-06 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 48.63 E-value: 1.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 10 RYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEI---------WIEGKEIA-------------- 66
Cdd:PRK10636 10 RRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYtfpgnwqlaWVNQETPAlpqpaleyvidgdr 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 67 RYRteELAKKISILKQSNHIAARLTVHelvsfgrfpysrGRLTRQDRDYVREaiRYMEL--------EPLQdRYMDELSG 138
Cdd:PRK10636 90 EYR--QLEAQLHDANERNDGHAIATIH------------GKLDAIDAWTIRS--RAASLlhglgfsnEQLE-RPVSDFSG 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 139 GQRQRAYIAMVLAQDTDYIFLDEPLNNLDMKHAVQMMKVLRklvdELGKTIVMVMHDINF 198
Cdd:PRK10636 153 GWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLK----SYQGTLILISHDRDF 208
|
|
| ATM1 |
COG5265 |
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ... |
20-173 |
4.29e-06 |
|
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 47.12 E-value: 4.29e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 20 VSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAKKISILKQS----NHiaarlTVHEL 95
Cdd:COG5265 377 VSFEVPAGKTVAIVGPSGAGKSTLARLLFRFYDVTSGRILIDGQDIRDVTQASLRAAIGIVPQDtvlfND-----TIAYN 451
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 96 VSFGRfpysrgrlTRQDRDYVREAIRYMELEP----LQDRYMDE-------LSGGQRQRAYIAMVLAQDTDYIFLDEPLN 164
Cdd:COG5265 452 IAYGR--------PDASEEEVEAAARAAQIHDfiesLPDGYDTRvgerglkLSGGEKQRVAIARTLLKNPPILIFDEATS 523
|
170
....*....|.
gi 831463781 165 NLDMK--HAVQ 173
Cdd:COG5265 524 ALDSRteRAIQ 534
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
16-229 |
5.75e-06 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 46.72 E-value: 5.75e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 16 VIDRVSLSVPRRKLTSLIGPNGAGKStLLSMMSRLIPKDGGEIWIEgkeiaRYRTEElakkISILKQSNHIAARLTVHEL 95
Cdd:PRK15093 22 AVDRVSMTLTEGEIRGLVGESGSGKS-LIAKAICGVTKDNWRVTAD-----RMRFDD----IDLLRLSPRERRKLVGHNV 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 96 VSFGRFPYS---------------------RGRLTRQDRDYVREAIRYMELEPLQDR------YMDELSGGQRQRAYIAM 148
Cdd:PRK15093 92 SMIFQEPQScldpservgrqlmqnipgwtyKGRWWQRFGWRKRRAIELLHRVGIKDHkdamrsFPYELTEGECQKVMIAI 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 149 VLAQDTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFASCYSDYMVALkdgavVCEGDVSSIMRDEV 228
Cdd:PRK15093 172 ALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVL-----YCGQTVETAPSKEL 246
|
.
gi 831463781 229 L 229
Cdd:PRK15093 247 V 247
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
1-221 |
6.52e-06 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 46.17 E-value: 6.52e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLlsmmSRLI---PK---DGGEIWIEGKEIARYRTEELA 74
Cdd:CHL00131 7 ILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTL----SKVIaghPAykiLEGDILFKGESILDLEPEERA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 75 KK---------ISILKQSNhiaarltvhelVSFGRFPYSRGRLTRQDRD--------YVREAIRYMELEP-LQDRYMDE- 135
Cdd:CHL00131 83 HLgiflafqypIEIPGVSN-----------ADFLRLAYNSKRKFQGLPEldplefleIINEKLKLVGMDPsFLSRNVNEg 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 136 LSGGQRQRAYIAMVLAQDTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDElGKTIVMVMHdinfascYS--------DYMV 207
Cdd:CHL00131 152 FSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTS-ENSIILITH-------YQrlldyikpDYVH 223
|
250
....*....|....
gi 831463781 208 ALKDGAVVCEGDVS 221
Cdd:CHL00131 224 VMQNGKIIKTGDAE 237
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
130-220 |
7.18e-06 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 46.75 E-value: 7.18e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 130 DRYMDELSGGQRQRAYIAMVLAQD---TDYIfLDEPLNNLDMKHAVQMMKVLRKLVDElGKTIVMVMHD---INFAscys 203
Cdd:PRK00635 471 ERALATLSGGEQERTALAKHLGAEligITYI-LDEPSIGLHPQDTHKLINVIKKLRDQ-GNTVLLVEHDeqmISLA---- 544
|
90
....*....|....*..
gi 831463781 204 DYMVALKDGAVVCEGDV 220
Cdd:PRK00635 545 DRIIDIGPGAGIFGGEV 561
|
|
| NHLM_micro_ABC1 |
TIGR03796 |
NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein; This protein describes ... |
16-194 |
8.98e-06 |
|
NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein; This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin. [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]
Pssm-ID: 274788 [Multi-domain] Cd Length: 710 Bit Score: 46.48 E-value: 8.98e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 16 VIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAKKISILKQsnhiaarltvhEL 95
Cdd:TIGR03796 494 LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQ-----------DI 562
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 96 VSFGrfPYSRGRLTRQDR-----DYVR---EAIRYMELEPLQDRYMDEL-------SGGQRQRAYIAMVLAQDTDYIFLD 160
Cdd:TIGR03796 563 FLFE--GTVRDNLTLWDPtipdaDLVRackDAAIHDVITSRPGGYDAELaegganlSGGQRQRLEIARALVRNPSILILD 640
|
170 180 190
....*....|....*....|....*....|....
gi 831463781 161 EPLNNLDMKHAVQMMKVLRKlvdeLGKTIVMVMH 194
Cdd:TIGR03796 641 EATSALDPETEKIIDDNLRR----RGCTCIIVAH 670
|
|
| PRK13541 |
PRK13541 |
cytochrome c biogenesis protein CcmA; Provisional |
14-191 |
9.61e-06 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184128 [Multi-domain] Cd Length: 195 Bit Score: 44.86 E-value: 9.61e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 14 KTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIaryrtEELAKK-ISILKQSNHIAARLTV 92
Cdd:PRK13541 13 QKNLFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNI-----NNIAKPyCTYIGHNLGLKLEMTV 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 93 HELVSFGRFPYSRGRLtrqdrdyVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYIFLDEPLNNLDMKHav 172
Cdd:PRK13541 88 FENLKFWSEIYNSAET-------LYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKEN-- 158
|
170
....*....|....*....
gi 831463781 173 qmmkvlRKLVDELgktIVM 191
Cdd:PRK13541 159 ------RDLLNNL---IVM 168
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
17-167 |
1.06e-05 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 46.15 E-value: 1.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 17 IDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEI-ARYRTEELAKK---ISILKQSNHIAARLTV 92
Cdd:PRK10762 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVvTRSPQDGLANGivyISEDRKRDGLVLGMSV 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 93 HE---LVSFGRFPYSRGRLTRQD-RDYVREAIRYMELE-PLQDRYMDELSGGQRQRAYIAMVLAQDTDYIFLDEPLNNLD 167
Cdd:PRK10762 348 KEnmsLTALRYFSRAGGSLKHADeQQAVSDFIRLFNIKtPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVD 427
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
28-191 |
1.28e-05 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 45.87 E-value: 1.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 28 KLTSLIGPNGAGKSTLL-SMMSRLipkDGGEIWIEGK---------EIARYRTEELakkISILKQSNHIAArLTVHELVS 97
Cdd:TIGR00956 88 ELTVVLGRPGSGCSTLLkTIASNT---DGFHIGVEGVitydgitpeEIKKHYRGDV---VYNAETDVHFPH-LTVGETLD 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 98 FG---RFPYSRGR-LTRQDRdyvREAIR--YMELEPLQ--------DRYMDELSGGQRQRAYIAMVLAQDTDYIFLDEPL 163
Cdd:TIGR00956 161 FAarcKTPQNRPDgVSREEY---AKHIAdvYMATYGLShtrntkvgNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNAT 237
|
170 180
....*....|....*....|....*...
gi 831463781 164 NNLDMKHAVQMMKVLRKLVDELGKTIVM 191
Cdd:TIGR00956 238 RGLDSATALEFIRALKTSANILDTTPLV 265
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
2-233 |
1.57e-05 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 45.71 E-value: 1.57e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRY--GGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAKKISI 79
Cdd:TIGR00957 1285 VEFRNYCLRYreDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITI 1364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 80 LKQSNHIAARLTVHELVSFGRfpysrgrltrqdrdYVREAIRY-MELEPLQDRYM--------------DELSGGQRQRA 144
Cdd:TIGR00957 1365 IPQDPVLFSGSLRMNLDPFSQ--------------YSDEEVWWaLELAHLKTFVSalpdkldhecaeggENLSVGQRQLV 1430
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 145 YIAMVLAQDTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDELgkTIVMVMHDINFASCYSDYMVAlkDGAVVCEGDVSSIM 224
Cdd:TIGR00957 1431 CLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDC--TVLTIAHRLNTIMDYTRVIVL--DKGEVAEFGAPSNL 1506
|
....*....
gi 831463781 225 RDEvlRGIY 233
Cdd:TIGR00957 1507 LQQ--RGIF 1513
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
2-83 |
1.62e-05 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 45.88 E-value: 1.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 2 VEVKQVLKRYGGK--TVIDRVSLSV-PRRKLtSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEELAKKIS 78
Cdd:PLN03130 1238 IKFEDVVLRYRPElpPVLHGLSFEIsPSEKV-GIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLG 1316
|
....*
gi 831463781 79 ILKQS 83
Cdd:PLN03130 1317 IIPQA 1321
|
|
| sufC |
PRK09580 |
cysteine desulfurase ATPase component; Reviewed |
1-221 |
1.89e-05 |
|
cysteine desulfurase ATPase component; Reviewed
Pssm-ID: 181965 [Multi-domain] Cd Length: 248 Bit Score: 44.78 E-value: 1.89e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 1 MVEVKQVLKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMS--RLIPKDGGEIWIEGKEIARYRTEELAKK-- 76
Cdd:PRK09580 1 MLSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAgrEDYEVTGGTVEFKGKDLLELSPEDRAGEgi 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 77 -------ISILKQSNHIAARLTVHELVSFgrfpysRGR--LTRQD-RDYVREAIRYMELEP-LQDRYMDE-LSGGQRQRA 144
Cdd:PRK09580 81 fmafqypVEIPGVSNQFFLQTALNAVRSY------RGQepLDRFDfQDLMEEKIALLKMPEdLLTRSVNVgFSGGEKKRN 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 831463781 145 YIAMVLAQDTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFASCYSDYMVALKDGAVVCEGDVS 221
Cdd:PRK09580 155 DILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFT 231
|
|
| ABCC_CFTR2 |
cd03289 |
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator ... |
2-62 |
2.33e-05 |
|
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213256 [Multi-domain] Cd Length: 275 Bit Score: 44.46 E-value: 2.33e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 831463781 2 VEVKQVLKRY--GGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDgGEIWIEG 62
Cdd:cd03289 3 MTVKDLTAKYteGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-GDIQIDG 64
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
31-214 |
3.37e-05 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 44.47 E-value: 3.37e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 31 SLIGPNGAGKSTLLSMMSRLIPKDGGEIwiegkeiarYRTEELakKISILKQSNHIAARLTVHELVSFGR-FPysrGRLT 109
Cdd:PLN03073 539 AMVGPNGIGKSTILKLISGELQPSSGTV---------FRSAKV--RMAVFSQHHVDGLDLSSNPLLYMMRcFP---GVPE 604
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 110 RQDRDYVRE--AIRYMELEPlqdryMDELSGGQRQRAYIAMVLAQDTDYIFLDEPLNNLDMKhAVQMMkvLRKLVDELGK 187
Cdd:PLN03073 605 QKLRAHLGSfgVTGNLALQP-----MYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLD-AVEAL--IQGLVLFQGG 676
|
170 180
....*....|....*....|....*..
gi 831463781 188 tIVMVMHDINFASCYSDYMVALKDGAV 214
Cdd:PLN03073 677 -VLMVSHDEHLISGSVDELWVVSEGKV 702
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
4-62 |
4.77e-05 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 44.52 E-value: 4.77e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 831463781 4 VKQVLKRY--GGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDgGEIWIEG 62
Cdd:TIGR01271 1220 VQGLTAKYteAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTE-GEIQIDG 1279
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
136-218 |
5.26e-05 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 44.23 E-value: 5.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 136 LSGGQRQRAYIAMVLAQ----DTDYIfLDEPLNNLDMKHAVQMMKVLRKLVDeLGKTIVMVMHDINFASCySDYMVAL-- 209
Cdd:TIGR00630 830 LSGGEAQRIKLAKELSKrstgRTLYI-LDEPTTGLHFDDIKKLLEVLQRLVD-KGNTVVVIEHNLDVIKT-ADYIIDLgp 906
|
90
....*....|...
gi 831463781 210 ----KDGAVVCEG 218
Cdd:TIGR00630 907 eggdGGGTVVASG 919
|
|
| ABC_UvrA_II |
cd03271 |
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair ... |
135-218 |
5.80e-05 |
|
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213238 [Multi-domain] Cd Length: 261 Bit Score: 43.37 E-value: 5.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 135 ELSGGQRQRAYIAMVLAQ----DTDYIfLDEPLNNLDMKHAVQMMKVLRKLVDeLGKTIVMVMHDINFASCySDYMVAL- 209
Cdd:cd03271 169 TLSGGEAQRIKLAKELSKrstgKTLYI-LDEPTTGLHFHDVKKLLEVLQRLVD-KGNTVVVIEHNLDVIKC-ADWIIDLg 245
|
90
....*....|....
gi 831463781 210 -----KDGAVVCEG 218
Cdd:cd03271 246 peggdGGGQVVASG 259
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
26-198 |
6.08e-05 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 41.98 E-value: 6.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 26 RRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIwiegkeiaryrteelakkISIlkqsnhiaarltvhelvsfgrfpysr 105
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGV------------------IYI-------------------------- 36
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 106 grltrqDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYIFLDEPLNNLDMKHAVQMMK-----VLRK 180
Cdd:smart00382 37 ------DGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLleelrLLLL 110
|
170
....*....|....*...
gi 831463781 181 LVDELGKTIVMVMHDINF 198
Cdd:smart00382 111 LKSEKNLTVILTTNDEKD 128
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
130-227 |
6.47e-05 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 43.85 E-value: 6.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 130 DRYMDELSGGQRQRAYIAM--------VLaqdtdYIfLDEPLNNLDMKHAVQMMKVLRKLVDeLGKTIVMVMHD---INF 198
Cdd:TIGR00630 483 SRAAGTLSGGEAQRIRLATqigsgltgVL-----YV-LDEPSIGLHQRDNRRLINTLKRLRD-LGNTLIVVEHDedtIRA 555
|
90 100 110
....*....|....*....|....*....|....*
gi 831463781 199 AscysDYMVALKDGA------VVCEGDVSSIMRDE 227
Cdd:TIGR00630 556 A----DYVIDIGPGAgehggeVVASGTPEEILANP 586
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
12-198 |
1.14e-04 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 42.92 E-value: 1.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 12 GGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRL----IPKDGGEIWIEgKEIARYRTEELA-------KKISIL 80
Cdd:PLN03073 188 GGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHaidgIPKNCQILHVE-QEVVGDDTTALQcvlntdiERTQLL 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 81 KQSNHIAARltVHELVSFGRFPYSRGRL-TRQDRDYVREAIR--YMELE----------------------PLQDRYMDE 135
Cdd:PLN03073 267 EEEAQLVAQ--QRELEFETETGKGKGANkDGVDKDAVSQRLEeiYKRLElidaytaearaasilaglsftpEMQVKATKT 344
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 831463781 136 LSGGQRQRAYIAMVLAQDTDYIFLDEPLNNLDMkHAVQMmkvLRKLVDELGKTIVMVMHDINF 198
Cdd:PLN03073 345 FSGGWRMRIALARALFIEPDLLLLDEPTNHLDL-HAVLW---LETYLLKWPKTFIVVSHAREF 403
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
3-228 |
1.42e-04 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 42.71 E-value: 1.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 3 EVKQV-LKRYGGKTVIDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEIARYRTEEL-AKKISil 80
Cdd:COG3845 259 EVENLsVRDDRGVPALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPPASGSIRLDGEDITGLSPRERrRLGVA-- 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 81 kqsnHI---------AARLTVHE---LVSFGRFPYSRGRLTRQD--RDYVREAIrymeleplqDRY----------MDEL 136
Cdd:COG3845 337 ----YIpedrlgrglVPDMSVAEnliLGRYRRPPFSRGGFLDRKaiRAFAEELI---------EEFdvrtpgpdtpARSL 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 137 SGGQRQRAYIAMVLAQDTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDElGKTIVMVMHDIN--FAscYSDYMVALKDGAV 214
Cdd:COG3845 404 SGGNQQKVILARELSRDPKLLIAAQPTRGLDVGAIEFIHQRLLELRDA-GAAVLLISEDLDeiLA--LSDRIAVMYEGRI 480
|
250
....*....|....
gi 831463781 215 VCEGDVSSIMRDEV 228
Cdd:COG3845 481 VGEVPAAEATREEI 494
|
|
| SapD |
COG4170 |
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms]; |
132-225 |
2.22e-04 |
|
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];
Pssm-ID: 443330 [Multi-domain] Cd Length: 331 Bit Score: 41.81 E-value: 2.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 132 YMDELSGGQRQRAYIAMVLAQDTDYIFLDEPLNNLDMKHAVQMMKVLRKLVDELGKTIVMVMHDINFASCYSDYMVALKD 211
Cdd:COG4170 155 YPHELTEGECQKVMIAMAIANQPRLLIADEPTNAMESTTQAQIFRLLARLNQLQGTSILLISHDLESISQWADTITVLYC 234
|
90
....*....|....
gi 831463781 212 GAVVCEGDVSSIMR 225
Cdd:COG4170 235 GQTVESGPTEQILK 248
|
|
| YbjD |
COG3593 |
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM ... |
17-200 |
2.86e-04 |
|
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains [Replication, recombination and repair];
Pssm-ID: 442812 [Multi-domain] Cd Length: 359 Bit Score: 41.53 E-value: 2.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 17 IDRVSLSVpRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGG-----------------EIWIEG------KEIARY----- 68
Cdd:COG3593 14 IKDLSIEL-SDDLTVLVGENNSGKSSILEALRLLLGPSSSrkfdeedfylgddpdlpEIEIELtfgsllSRLLRLllkee 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 69 RTEELAKKISILKQS-----NHIAARLTvHELVSFGRFPYSRGRLTRQDRDYVREAIRyMELEPLQDRYMDELSGGQRQR 143
Cdd:COG3593 93 DKEELEEALEELNEElkealKALNELLS-EYLKELLDGLDLELELSLDELEDLLKSLS-LRIEDGKELPLDRLGSGFQRL 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 831463781 144 AYIAMVLA------QDTDYIFL-DEPLNNLdmkHAvQMMKVLRKLVDELGKT---IVMVMHDINFAS 200
Cdd:COG3593 171 ILLALLSAlaelkrAPANPILLiEEPEAHL---HP-QAQRRLLKLLKELSEKpnqVIITTHSPHLLS 233
|
|
| AAA_29 |
pfam13555 |
P-loop containing region of AAA domain; |
18-51 |
3.10e-04 |
|
P-loop containing region of AAA domain;
Pssm-ID: 433304 [Multi-domain] Cd Length: 61 Bit Score: 37.96 E-value: 3.10e-04
10 20 30
....*....|....*....|....*....|....
gi 831463781 18 DRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLI 51
Cdd:pfam13555 13 DGHTIPIDPRGNTLLTGPSGSGKSTLLDAIQTLL 46
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
17-196 |
3.38e-04 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 40.95 E-value: 3.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 17 IDRVSLSVPRRKLTSLIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGkeiaryrteelakKISILKQSNHIAARLTVHELV 96
Cdd:PRK13546 40 LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG-------------EVSVIAISAGLSGQLTGIENI 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 97 SFGRFpySRGRLTRQDRDYVREAIRYMELEPLQDRYMDELSGGQRQRAYIAMVLAQDTDYIFLDEPLNNLDMKHAvqmMK 176
Cdd:PRK13546 107 EFKML--CMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFA---QK 181
|
170 180
....*....|....*....|..
gi 831463781 177 VLRKLVD--ELGKTIVMVMHDI 196
Cdd:PRK13546 182 CLDKIYEfkEQNKTIFFVSHNL 203
|
|
| AAA_27 |
pfam13514 |
AAA domain; This domain is found in a number of double-strand DNA break proteins. This domain ... |
8-50 |
9.03e-04 |
|
AAA domain; This domain is found in a number of double-strand DNA break proteins. This domain contains a P-loop motif.
Pssm-ID: 433272 [Multi-domain] Cd Length: 207 Bit Score: 39.46 E-value: 9.03e-04
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 831463781 8 LKRYGGKTviDR-VSLSVPRRKLTSLIGPNGAGKSTLLSMMSRL 50
Cdd:pfam13514 8 LERYGPFT--DRsLDFPAGGPDLHLIYGPNEAGKSTALRAISDL 49
|
|
| COG3950 |
COG3950 |
Predicted ATP-binding protein involved in virulence [General function prediction only]; |
8-65 |
2.13e-03 |
|
Predicted ATP-binding protein involved in virulence [General function prediction only];
Pssm-ID: 443150 [Multi-domain] Cd Length: 276 Bit Score: 38.44 E-value: 2.13e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 831463781 8 LKRYGGktvIDRVSLSVPR-RKLTSLIGPNGAGKSTLLSMM--------SRLIPKDGGEIWIEGKEI 65
Cdd:COG3950 8 IENFRG---FEDLEIDFDNpPRLTVLVGENGSGKTTLLEAIalalsgllSRLDDVKFRKLLIRNGEF 71
|
|
| ABC_SMC1_euk |
cd03275 |
ATP-binding cassette domain of eukaryotic SMC1 proteins; The structural maintenance of ... |
9-48 |
3.58e-03 |
|
ATP-binding cassette domain of eukaryotic SMC1 proteins; The structural maintenance of chromosomes (SMC) proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (formerly known as Rad18).
Pssm-ID: 213242 [Multi-domain] Cd Length: 247 Bit Score: 37.94 E-value: 3.58e-03
10 20 30 40
....*....|....*....|....*....|....*....|
gi 831463781 9 KRYGGKTVIDrvslsvPRRKLTSLIGPNGAGKSTLLSMMS 48
Cdd:cd03275 10 KSYKGRHVIG------PFDRFTCIIGPNGSGKSNLMDAIS 43
|
|
| COG4637 |
COG4637 |
Predicted ATPase [General function prediction only]; |
21-45 |
4.60e-03 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443675 [Multi-domain] Cd Length: 371 Bit Score: 37.60 E-value: 4.60e-03
10 20
....*....|....*....|....*
gi 831463781 21 SLSVPRRKLTSLIGPNGAGKSTLLS 45
Cdd:COG4637 15 DLELPLGPLTVLIGANGSGKSNLLD 39
|
|
| ABC_Rad50 |
cd03240 |
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ... |
29-198 |
6.39e-03 |
|
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Pssm-ID: 213207 [Multi-domain] Cd Length: 204 Bit Score: 36.82 E-value: 6.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 29 LTSLIGPNGAGKSTLlsmmsrlipkdggeiwIEGKEIARYRteELAKKISILKQSNHIA---ARLTVHELvsfgRFPYSR 105
Cdd:cd03240 24 LTLIVGQNGAGKTTI----------------IEALKYALTG--ELPPNSKGGAHDPKLIregEVRAQVKL----AFENAN 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 106 GRL--TRQDRDYVREAIrYMELEPLQDRYMDE---LSGGQRQ------RAYIAMVLAQDTDYIFLDEPLNNLDMKH-AVQ 173
Cdd:cd03240 82 GKKytITRSLAILENVI-FCHQGESNWPLLDMrgrCSGGEKVlasliiRLALAETFGSNCGILALDEPTTNLDEENiEES 160
|
170 180
....*....|....*....|....*
gi 831463781 174 MMKVLRKLVDELGKTIVMVMHDINF 198
Cdd:cd03240 161 LAEIIEERKSQKNFQLIVITHDEEL 185
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
32-208 |
7.60e-03 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 37.18 E-value: 7.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 32 LIGPNGAGKSTLLSMMSRLIPKDGGEIWIEGKEiaryrteelakKISILKQSNHIAARLTVHELVSFGRFP--------- 102
Cdd:PRK15064 32 LIGANGCGKSTFMKILGGDLEPSAGNVSLDPNE-----------RLGKLRQDQFAFEEFTVLDTVIMGHTElwevkqerd 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 103 --YSRGRLTrqDRDYVREAirymELE------------------------PLQDRY--MDELSGGQRQRAYIAMVLAQDT 154
Cdd:PRK15064 101 riYALPEMS--EEDGMKVA----DLEvkfaemdgytaearagelllgvgiPEEQHYglMSEVAPGWKLRVLLAQALFSNP 174
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 831463781 155 DYIFLDEPLNNLDmkhavqmMKVLRKLVDELGK---TIVMVMHDINF--ASC-----------------YSDYMVA 208
Cdd:PRK15064 175 DILLLDEPTNNLD-------INTIRWLEDVLNErnsTMIIISHDRHFlnSVCthmadldygelrvypgnYDEYMTA 243
|
|
| COG4185 |
COG4185 |
Predicted ABC-type ATPase or kinase [General function prediction only]; |
25-67 |
9.29e-03 |
|
Predicted ABC-type ATPase or kinase [General function prediction only];
Pssm-ID: 443339 Cd Length: 197 Bit Score: 36.02 E-value: 9.29e-03
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 831463781 25 PRRKLTSLIGPNGAGKSTLLSmmSRLIPKDGGEIWIEGKEIAR 67
Cdd:COG4185 2 AMPRLYIIAGPNGAGKSTFAR--TILPEELGGLEFVNADLIAR 42
|
|
| UvrA |
COG0178 |
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair]; |
116-218 |
9.60e-03 |
|
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair];
Pssm-ID: 439948 [Multi-domain] Cd Length: 941 Bit Score: 36.93 E-value: 9.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831463781 116 VREAIRYME--------LEPLQD---RYM------DELSGGQRQRAYIAMVLAQ-DTD---YIfLDEPLNNL---DMKHa 171
Cdd:COG0178 790 VEEALEFFEnipkiarkLQTLQDvglGYIklgqpaTTLSGGEAQRVKLASELSKrSTGktlYI-LDEPTTGLhfhDIRK- 867
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 831463781 172 vqMMKVLRKLVDeLGKTIVMVMHDINFASCySDYMVAL------KDGAVVCEG 218
Cdd:COG0178 868 --LLEVLHRLVD-KGNTVVVIEHNLDVIKT-ADWIIDLgpeggdGGGEIVAEG 916
|
|
| |
