NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|830261280|gb|AKL83071|]
View 

hypothetical protein (mitochondrion) [Saccharomyces cerevisiae]

Protein Classification

LAGLIDADG family homing endonuclease( domain architecture ID 10469810)

LAGLIDADG family homing endonuclease belongs to a large family of homing endonucleases that each contain one or two copies of a motif that resembles the consensus sequence LAGLIDADG and is directly involved in the DNA cutting process

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
LAGLIDADG_1 pfam00961
LAGLIDADG endonuclease;
321-423 1.69e-04

LAGLIDADG endonuclease;


:

Pssm-ID: 395767  Cd Length: 101  Bit Score: 40.69  E-value: 1.69e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 830261280  321 LAGFTAADGSFLSSMYNPKDTLLFKNmRPSYVISQVETRKELIYLIQESFDlsISNVKKVGNRKLKDFKLfTRTTDELMK 400
Cdd:pfam00961   1 LAGFIDGDGSFSINVTKSKSYKGYRV-RLRFQISLHSKDENLLEKIKNYLG--IGSISKRKNDNTVIYII-SNSKKSLNI 76

                          90       100
                  ....*....|....*....|...
gi 830261280  401 FIYYFDKFlPLHDNKQFNYIKFR 423
Cdd:pfam00961  77 IIPYFDKY-PLLTSKYLDYLDFK 98
 
Name Accession Description Interval E-value
LAGLIDADG_1 pfam00961
LAGLIDADG endonuclease;
321-423 1.69e-04

LAGLIDADG endonuclease;


Pssm-ID: 395767  Cd Length: 101  Bit Score: 40.69  E-value: 1.69e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 830261280  321 LAGFTAADGSFLSSMYNPKDTLLFKNmRPSYVISQVETRKELIYLIQESFDlsISNVKKVGNRKLKDFKLfTRTTDELMK 400
Cdd:pfam00961   1 LAGFIDGDGSFSINVTKSKSYKGYRV-RLRFQISLHSKDENLLEKIKNYLG--IGSISKRKNDNTVIYII-SNSKKSLNI 76

                          90       100
                  ....*....|....*....|...
gi 830261280  401 FIYYFDKFlPLHDNKQFNYIKFR 423
Cdd:pfam00961  77 IIPYFDKY-PLLTSKYLDYLDFK 98
 
Name Accession Description Interval E-value
LAGLIDADG_1 pfam00961
LAGLIDADG endonuclease;
321-423 1.69e-04

LAGLIDADG endonuclease;


Pssm-ID: 395767  Cd Length: 101  Bit Score: 40.69  E-value: 1.69e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 830261280  321 LAGFTAADGSFLSSMYNPKDTLLFKNmRPSYVISQVETRKELIYLIQESFDlsISNVKKVGNRKLKDFKLfTRTTDELMK 400
Cdd:pfam00961   1 LAGFIDGDGSFSINVTKSKSYKGYRV-RLRFQISLHSKDENLLEKIKNYLG--IGSISKRKNDNTVIYII-SNSKKSLNI 76

                          90       100
                  ....*....|....*....|...
gi 830261280  401 FIYYFDKFlPLHDNKQFNYIKFR 423
Cdd:pfam00961  77 IIPYFDKY-PLLTSKYLDYLDFK 98
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH