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Conserved domains on  [gi|827506982|gb|AKJ84436|]
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matrix protein 2 [Influenza A virus (A/swine/North Carolina/01048/2006(H1N1))]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Flu_M2 super family cl02903
Influenza Matrix protein (M2); This protein spans the viral membrane with an extracellular ...
 1-97 3.58e-68

Influenza Matrix protein (M2); This protein spans the viral membrane with an extracellular amino-terminus external and a cytoplasmic carboxy-terminus.


The actual alignment was detected with superfamily member pfam00599:

Pssm-ID: 278994  Cd Length: 97  Bit Score: 198.72  E-value: 3.58e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827506982   1 MSLLTEVETPIRNGWECKCNDSNDPLIGAASIIGILHLTLWILDRLFFKCIYRRFKYGLQRGPSTEGVPESMREEYRQKQ 80
Cdd:pfam00599  1 MSLLTEVETPIKNEWECKCNDSSDPLAIAANIIGILHLILWILDRLFFKCIYRRFKYGLKGGPSTEGVPESMREEYRKEQ 80

                         90
                 ....*....|....*..
gi 827506982  81 QSAVDVDDGHFVNIVLE 97
Cdd:pfam00599 81 QSAVDADDGHFVNIELE 97
 
Name Accession Description Interval E-value
Flu_M2 pfam00599
Influenza Matrix protein (M2); This protein spans the viral membrane with an extracellular ...
 1-97 3.58e-68

Influenza Matrix protein (M2); This protein spans the viral membrane with an extracellular amino-terminus external and a cytoplasmic carboxy-terminus.


Pssm-ID: 278994  Cd Length: 97  Bit Score: 198.72  E-value: 3.58e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827506982   1 MSLLTEVETPIRNGWECKCNDSNDPLIGAASIIGILHLTLWILDRLFFKCIYRRFKYGLQRGPSTEGVPESMREEYRQKQ 80
Cdd:pfam00599  1 MSLLTEVETPIKNEWECKCNDSSDPLAIAANIIGILHLILWILDRLFFKCIYRRFKYGLKGGPSTEGVPESMREEYRKEQ 80

                         90
                 ....*....|....*..
gi 827506982  81 QSAVDVDDGHFVNIVLE 97
Cdd:pfam00599 81 QSAVDADDGHFVNIELE 97
 
Name Accession Description Interval E-value
Flu_M2 pfam00599
Influenza Matrix protein (M2); This protein spans the viral membrane with an extracellular ...
 1-97 3.58e-68

Influenza Matrix protein (M2); This protein spans the viral membrane with an extracellular amino-terminus external and a cytoplasmic carboxy-terminus.


Pssm-ID: 278994  Cd Length: 97  Bit Score: 198.72  E-value: 3.58e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827506982   1 MSLLTEVETPIRNGWECKCNDSNDPLIGAASIIGILHLTLWILDRLFFKCIYRRFKYGLQRGPSTEGVPESMREEYRQKQ 80
Cdd:pfam00599  1 MSLLTEVETPIKNEWECKCNDSSDPLAIAANIIGILHLILWILDRLFFKCIYRRFKYGLKGGPSTEGVPESMREEYRKEQ 80

                         90
                 ....*....|....*..
gi 827506982  81 QSAVDVDDGHFVNIVLE 97
Cdd:pfam00599 81 QSAVDADDGHFVNIELE 97
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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