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Conserved domains on  [gi|82541837|gb|ABB81902|]
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cytochrome b (mitochondrion) [Sclerophasma paresisense]

Protein Classification

cytochrome b/b6( domain architecture ID 11475928)

cytochrome b/b6 (PetB) is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme; cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes; in plants and cyanobacteria, cytochrome b6 is analogous to cytochrome b and contains two chains: helices A-D (encoded by petB) and helices E-H (encoded by petD)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 12-367 0e+00

cytochrome b; Provisional


:

Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 700.38  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837   12 FKIANNALVDLPTPSNISIWWNFGSLLGLCLIIQILTGLFLAMQYAPNIELSFNSVVHICRDVNMGWMLRTMHANGASFF 91
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837   92 FICIYLHIGRGMYYGSYKLLPTWMMGVMILFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVWGGFAV 171
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837  172 DNATLNRFFTFHFVLPFMILGMVMVHLLFLHQTGSNNPLGINSNMDKIPFHPYFTFKDIMGFIMMLMALSMLVLYEPYML 251
Cdd:MTH00156 161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837  252 GDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILMLLPFSNKSNFRSTQFYPINQFMFWSMVA 331
Cdd:MTH00156 241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                        330       340       350
                 ....*....|....*....|....*....|....*.
gi 82541837  332 MIILLTWIGARPVEDPYILTGQILTVTYFSYYILNP 367
Cdd:MTH00156 321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 12-367 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 700.38  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837   12 FKIANNALVDLPTPSNISIWWNFGSLLGLCLIIQILTGLFLAMQYAPNIELSFNSVVHICRDVNMGWMLRTMHANGASFF 91
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837   92 FICIYLHIGRGMYYGSYKLLPTWMMGVMILFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVWGGFAV 171
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837  172 DNATLNRFFTFHFVLPFMILGMVMVHLLFLHQTGSNNPLGINSNMDKIPFHPYFTFKDIMGFIMMLMALSMLVLYEPYML 251
Cdd:MTH00156 161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837  252 GDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILMLLPFSNKSNFRSTQFYPINQFMFWSMVA 331
Cdd:MTH00156 241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                        330       340       350
                 ....*....|....*....|....*....|....*.
gi 82541837  332 MIILLTWIGARPVEDPYILTGQILTVTYFSYYILNP 367
Cdd:MTH00156 321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
17-377 1.26e-129

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 377.21  E-value: 1.26e-129
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837  17 NALVDLPTPSNISIWWNFGSLLGLCLIIQILTGLFLAMQYAPNIELSFNSVVHICRDVNMGWMLRTMHANGASFFFICIY 96
Cdd:COG1290  25 REHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVY 104

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837  97 LHIGRGMYYGSYK----LLptWMMGVMILFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVWGGFAVD 172
Cdd:COG1290 105 LHMFRGFFYGAYKkpreLN--WIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPG 182

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837 173 NATLNRFFTFH-FVLPFMILGMVMVHLLFLHQTGSNNPLGI----NSNMDKIPFHPYFTFKDIMGFIMMLMALSMLVLYE 247
Cdd:COG1290 183 DATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFF 262

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837 248 PymLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIP--NKLGGVIALVMSIAILMLLPFSNKSNFRSTQFYPINQFM 325
Cdd:COG1290 263 P--INPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTAL 340

                       330       340       350       360       370
                ....*....|....*....|....*....|....*....|....*....|..
gi 82541837 326 FWSMVAMIILLTWIGARPveDPYILTGQILTVTYFSYYILNPIIMKYWDKLL 377
Cdd:COG1290 341 GVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFLIVLPILAFIEKTK 390
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 10-207 4.85e-86

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 259.22  E-value: 4.85e-86
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837  10 PLFKIANNALVDLPTPSNISIWWNFGSLLGLCLIIQILTGLFLAMQYAPNIELSFNSVVHICRDVNMGWMLRTMHANGAS 89
Cdd:cd00284   1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837  90 FFFICIYLHIGRGMYYGSYK--LLPTWMMGVMILFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVWG 167
Cdd:cd00284  81 MFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                       170       180       190       200
                ....*....|....*....|....*....|....*....|
gi 82541837 168 GFAVDNATLNRFFTFHFVLPFMILGMVMVHLLFLHQTGSN 207
Cdd:cd00284 161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
19-205 1.86e-77

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 236.89  E-value: 1.86e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837    19 LVDLPTPSNISIWWNFGSLLGLCLIIQILTGLFLAMQYAPNIELSFNSVVHICRDVNMGWMLRTMHANGASFFFICIYLH 98
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837    99 IGRGMYYG--SYKLLPTWMMGVMILFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVWGGFAVDNATL 176
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 82541837   177 NRFFTFHFVLPFMILGMVMVHLLFLHQTG 205
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 230-341 9.60e-12

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 62.51  E-value: 9.60e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837   230 IMGFIMMLMALSMLvlyEPYMLGDPdnfipANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILMLLPF-S 308
Cdd:TIGR01156  44 ILGTIACVVGLAVL---DPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFiE 115

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 82541837   309 NKSNFRSTQFYPINQ--FMFWSMVAMiilltWIGA 341
Cdd:TIGR01156 116 NVNKFQNPFRRPVATtvFLFGTVVAL-----WLGI 145
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 12-367 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 700.38  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837   12 FKIANNALVDLPTPSNISIWWNFGSLLGLCLIIQILTGLFLAMQYAPNIELSFNSVVHICRDVNMGWMLRTMHANGASFF 91
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837   92 FICIYLHIGRGMYYGSYKLLPTWMMGVMILFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVWGGFAV 171
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837  172 DNATLNRFFTFHFVLPFMILGMVMVHLLFLHQTGSNNPLGINSNMDKIPFHPYFTFKDIMGFIMMLMALSMLVLYEPYML 251
Cdd:MTH00156 161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837  252 GDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILMLLPFSNKSNFRSTQFYPINQFMFWSMVA 331
Cdd:MTH00156 241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                        330       340       350
                 ....*....|....*....|....*....|....*.
gi 82541837  332 MIILLTWIGARPVEDPYILTGQILTVTYFSYYILNP 367
Cdd:MTH00156 321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
CYTB MTH00145
cytochrome b; Provisional
 1-378 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 632.71  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837    1 MNKTLRTSHPLFKIANNALVDLPTPSNISIWWNFGSLLGLCLIIQILTGLFLAMQYAPNIELSFNSVVHICRDVNMGWML 80
Cdd:MTH00145   1 MLSPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837   81 RTMHANGASFFFICIYLHIGRGMYYGSYKLLPTWMMGVMILFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTD 160
Cdd:MTH00145  81 RSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKM 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837  161 LVQWVWGGFAVDNATLNRFFTFHFVLPFMILGMVMVHLLFLHQTGSNNPLGINSNMDKIPFHPYFTFKDIMGFIMMLMAL 240
Cdd:MTH00145 161 LVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837  241 SMLVLYEPYMLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILMLLPFSNKSNFRSTQFYP 320
Cdd:MTH00145 241 VFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYP 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 82541837  321 INQFMFWSMVAMIILLTWIGARPVEDPYILTGQILTVTYFSYYILNPIIMKYWDKLLY 378
Cdd:MTH00145 321 LNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLILPLVQKLWDNILD 378
CYTB MTH00119
cytochrome b; Provisional
 1-378 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 620.38  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837    1 MNKTLRTSHPLFKIANNALVDLPTPSNISIWWNFGSLLGLCLIIQILTGLFLAMQYAPNIELSFNSVVHICRDVNMGWML 80
Cdd:MTH00119   1 MAPNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837   81 RTMHANGASFFFICIYLHIGRGMYYGSYKLLPTWMMGVMILFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTD 160
Cdd:MTH00119  81 RNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQT 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837  161 LVQWVWGGFAVDNATLNRFFTFHFVLPFMILGMVMVHLLFLHQTGSNNPLGINSNMDKIPFHPYFTFKDIMGFIMMLMAL 240
Cdd:MTH00119 161 LVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837  241 SMLVLYEPYMLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILMLLPFSNKSNFRSTQFYP 320
Cdd:MTH00119 241 LTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRP 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 82541837  321 INQFMFWSMVAMIILLTWIGARPVEDPYILTGQILTVTYFS-YYILNPIIMKYWDKLLY 378
Cdd:MTH00119 321 LSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTiLLILFPLLGALENKMLN 379
CYTB MTH00131
cytochrome b; Provisional
 4-368 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 617.05  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837    4 TLRTSHPLFKIANNALVDLPTPSNISIWWNFGSLLGLCLIIQILTGLFLAMQYAPNIELSFNSVVHICRDVNMGWMLRTM 83
Cdd:MTH00131   3 SLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNL 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837   84 HANGASFFFICIYLHIGRGMYYGSYKLLPTWMMGVMILFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQ 163
Cdd:MTH00131  83 HANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQ 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837  164 WVWGGFAVDNATLNRFFTFHFVLPFMILGMVMVHLLFLHQTGSNNPLGINSNMDKIPFHPYFTFKDIMGFIMMLMALSML 243
Cdd:MTH00131 163 WIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSL 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837  244 VLYEPYMLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILMLLPFSNKSNFRSTQFYPINQ 323
Cdd:MTH00131 243 ALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQ 322

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*.
gi 82541837  324 FMFWSMVAMIILLTWIGARPVEDPYILTGQILTVTYFSYY-ILNPI 368
Cdd:MTH00131 323 FLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFlVLMPL 368
CYTB MTH00191
cytochrome b; Provisional
 5-365 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 609.99  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837    5 LRTSHPLFKIANNALVDLPTPSNISIWWNFGSLLGLCLIIQILTGLFLAMQYAPNIELSFNSVVHICRDVNMGWMLRTMH 84
Cdd:MTH00191   1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837   85 ANGASFFFICIYLHIGRGMYYGSYKLLPTWMMGVMILFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQW 164
Cdd:MTH00191  81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQW 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837  165 VWGGFAVDNATLNRFFTFHFVLPFMILGMVMVHLLFLHQTGSNNPLGINSNMDKIPFHPYFTFKDIMGFIMMLMALSMLV 244
Cdd:MTH00191 161 LWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLV 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837  245 LYEPYMLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILMLLPFSNKSNFRSTQFYPINQF 324
Cdd:MTH00191 241 LFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQV 320

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|.
gi 82541837  325 MFWSMVAMIILLTWIGARPVEDPYILTGQILTVTYFSYYIL 365
Cdd:MTH00191 321 VFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLL 361
CYTB MTH00016
cytochrome b; Validated
 1-378 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 608.99  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837    1 MNKTLRTSHPLFKIANNALVDLPTPSNISIWWNFGSLLGLCLIIQILTGLFLAMQYAPNIELSFNSVVHICRDVNMGWML 80
Cdd:MTH00016   1 MFSPMRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837   81 RTMHANGASFFFICIYLHIGRGMYYGSYKLLPTWMMGVMILFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTD 160
Cdd:MTH00016  81 RNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKM 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837  161 LVQWVWGGFAVDNATLNRFFTFHFVLPFMILGMVMVHLLFLHQTGSNNPLGINSNMDKIPFHPYFTFKDIMGFIMMLMAL 240
Cdd:MTH00016 161 LVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837  241 SMLVLYEPYMLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILMLLPFSNKSNFRSTQFYP 320
Cdd:MTH00016 241 LSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYP 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 82541837  321 INQFMFWSMVAMIILLTWIGARPVEDPYILTGQILTVTYFSYYILNPIIMKYWDKLLY 378
Cdd:MTH00016 321 LNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYFMINPLLMKLWDKLLK 378
CYTB MTH00100
cytochrome b; Provisional
 5-377 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 602.78  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837    5 LRTSHPLFKIANNALVDLPTPSNISIWWNFGSLLGLCLIIQILTGLFLAMQYAPNIELSFNSVVHICRDVNMGWMLRTMH 84
Cdd:MTH00100   4 IRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLH 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837   85 ANGASFFFICIYLHIGRGMYYGSYKLLPTWMMGVMILFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQW 164
Cdd:MTH00100  84 ANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEW 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837  165 VWGGFAVDNATLNRFFTFHFVLPFMILGMVMVHLLFLHQTGSNNPLGINSNMDKIPFHPYFTFKDIMGFIMMLMALSMLV 244
Cdd:MTH00100 164 IWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLV 243

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837  245 LYEPYMLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILMLLPFSNKSNFRSTQFYPINQF 324
Cdd:MTH00100 244 LFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQC 323

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....
gi 82541837  325 MFWSMVAMIILLTWIGARPVEDPYILTGQILTVTYFS-YYILNPIIMKYWDKLL 377
Cdd:MTH00100 324 LFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLiILILMPIASLIENNLL 377
CYTB MTH00074
cytochrome b; Provisional
 1-365 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 598.20  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837    1 MNKTLRTSHPLFKIANNALVDLPTPSNISIWWNFGSLLGLCLIIQILTGLFLAMQYAPNIELSFNSVVHICRDVNMGWML 80
Cdd:MTH00074   1 MAHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLM 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837   81 RTMHANGASFFFICIYLHIGRGMYYGSYKLLPTWMMGVMILFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTD 160
Cdd:MTH00074  81 RNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDT 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837  161 LVQWVWGGFAVDNATLNRFFTFHFVLPFMILGMVMVHLLFLHQTGSNNPLGINSNMDKIPFHPYFTFKDIMGFIMMLMAL 240
Cdd:MTH00074 161 LVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTAL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837  241 SMLVLYEPYMLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILMLLPFSNKSNFRSTQFYP 320
Cdd:MTH00074 241 ALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRP 320

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*
gi 82541837  321 INQFMFWSMVAMIILLTWIGARPVEDPYILTGQILTVTYFSYYIL 365
Cdd:MTH00074 321 LTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFII 365
CYTB MTH00034
cytochrome b; Validated
 5-365 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 567.80  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837    5 LRTSHPLFKIANNALVDLPTPSNISIWWNFGSLLGLCLIIQILTGLFLAMQYAPNIELSFNSVVHICRDVNMGWMLRTMH 84
Cdd:MTH00034   4 LRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIH 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837   85 ANGASFFFICIYLHIGRGMYYGSYKLLPTWMMGVMILFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQW 164
Cdd:MTH00034  84 ANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQW 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837  165 VWGGFAVDNATLNRFFTFHFVLPFMILGMVMVHLLFLHQTGSNNPLGINSNMDKIPFHPYFTFKDIMGFIMMLMALSMLV 244
Cdd:MTH00034 164 IWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLA 243

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837  245 LYEPYMLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILMLLPFSNKSNFRSTQFYPINQF 324
Cdd:MTH00034 244 LLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQI 323

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|.
gi 82541837  325 MFWSMVAMIILLTWIGARPVEDPYILTGQILTVTYFSYYIL 365
Cdd:MTH00034 324 AFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLF 364
CYTB MTH00224
cytochrome b; Provisional
 1-377 0e+00

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 538.74  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837    1 MNKTLRTSHPLFKIANNALVDLPTPSNISIWWNFGSLLGLCLIIQILTGLFLAMQYAPNIELSFNSVVHICRDVNMGWML 80
Cdd:MTH00224   1 MFKPFRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837   81 RTMHANGASFFFICIYLHIGRGMYYGSYKLLPTWMMGVMILFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTD 160
Cdd:MTH00224  81 RSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKD 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837  161 LVQWVWGGFAVDNATLNRFFTFHFVLPFMILGMVMVHLLFLHQTGSNNPLGINSNMDKIPFHPYFTFKDIMGFIMMLMAL 240
Cdd:MTH00224 161 LVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837  241 SMLVLYEPYMLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILMLLPFSNKSNFRSTQFYP 320
Cdd:MTH00224 241 SLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYP 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 82541837  321 INQFMFWSMVAMIILLTWIGARPVEDPYILTGQILTVTYFSYYILNPIIMKYWDKLL 377
Cdd:MTH00224 321 LNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFSYFIISPAISKLWDDLL 377
CYTB MTH00022
cytochrome b; Validated
 5-378 7.91e-179

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 501.54  E-value: 7.91e-179
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837    5 LRTSHPLFKIANNALVDLPTPSNISIWWNFGSLLGLCLIIQILTGLFLAMQYAPNIELSFNSVVHICRDVNMGWMLRTMH 84
Cdd:MTH00022   3 LRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLH 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837   85 ANGASFFFICIYLHIGRGMYYGSYKLLPTWMMGVMILFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQW 164
Cdd:MTH00022  83 ANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQW 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837  165 VWGGFAVDNATLNRFFTFHFVLPFMILGMVMVHLLFLHQTGSNNPLGINSNMDKIPFHPYFTFKDIMGFIMMLMALSMLV 244
Cdd:MTH00022 163 VWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIV 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837  245 LYEPYMLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILMLLPFSNKSNFRSTQFYPINQF 324
Cdd:MTH00022 243 YFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRM 322

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 82541837  325 MFWSMVAMIILLTWIGARPVEDPYILTGQILTVTYFSYY-ILNPIIMKYWDKLLY 378
Cdd:MTH00022 323 AFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFlVLIPLLGELENQLLF 377
CYTB MTH00053
cytochrome b; Provisional
 1-377 1.75e-177

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 498.46  E-value: 1.75e-177
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837    1 MNKTLRTSHPLFKIANNALVDLPTPSNISIWWNFGSLLGLCLIIQILTGLFLAMQYAPNIELSFNSVVHICRDVNMGWML 80
Cdd:MTH00053   1 MTKTIRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFIL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837   81 RTMHANGASFFFICIYLHIGRGMYYGSYKLLPTWMMGVMILFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTD 160
Cdd:MTH00053  81 RYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDD 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837  161 LVQWVWGGFAVDNATLNRFFTFHFVLPFMILGMVMVHLLFLHQTGSNNPLGINSNMDKIPFHPYFTFKDIMGFIMMLMAL 240
Cdd:MTH00053 161 IVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837  241 SMLVLYEPYMLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILMLLPFSNKSNFRSTQFYP 320
Cdd:MTH00053 241 SIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRP 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 82541837  321 INQFMFWSMVAMIILLTWIGARPVEDPYILTGQILTVTYFSYY-ILNPIIMKYWDKLL 377
Cdd:MTH00053 321 LSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFlILMPLAGYLENKLL 378
CYTB MTH00033
cytochrome b; Provisional
 17-378 1.31e-140

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 405.09  E-value: 1.31e-140
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837   17 NALVDLPTPSNISIWWNFGSLLGLCLIIQILTGLFLAMQYAPNIELSFNSVVHICRDVNMGWMLRTMHANGASFFFICIY 96
Cdd:MTH00033  13 NDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVY 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837   97 LHIGRGMYYGSYKLLPTWMMGVMILFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVWGGFAVDNATL 176
Cdd:MTH00033  93 CHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTL 172

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837  177 NRFFTFHFVLPFMILGMVMVHLLFLHQTGSNNPLGINSNMDKIPFHPYFTFKDIMGFIMMLMALsMLVLYEPY---MLGD 253
Cdd:MTH00033 173 NRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVF-VIIGIEPRietLLQD 251

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837  254 PDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILMLLPFSNKSNFRSTQFYPINQFMFWSMVAMI 333
Cdd:MTH00033 252 PENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDF 331

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*.
gi 82541837  334 ILLTWIGARPV-EDPYILTGQILTVTYFSYYILNPIIMKYWDKLLY 378
Cdd:MTH00033 332 IILTWIGSAPAgADPYVLIGRIATIFYFGYFLVLVPLLGYLSNLFY 377
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
17-377 1.26e-129

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 377.21  E-value: 1.26e-129
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837  17 NALVDLPTPSNISIWWNFGSLLGLCLIIQILTGLFLAMQYAPNIELSFNSVVHICRDVNMGWMLRTMHANGASFFFICIY 96
Cdd:COG1290  25 REHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVY 104

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837  97 LHIGRGMYYGSYK----LLptWMMGVMILFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVWGGFAVD 172
Cdd:COG1290 105 LHMFRGFFYGAYKkpreLN--WIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPG 182

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837 173 NATLNRFFTFH-FVLPFMILGMVMVHLLFLHQTGSNNPLGI----NSNMDKIPFHPYFTFKDIMGFIMMLMALSMLVLYE 247
Cdd:COG1290 183 DATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFF 262

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837 248 PymLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIP--NKLGGVIALVMSIAILMLLPFSNKSNFRSTQFYPINQFM 325
Cdd:COG1290 263 P--INPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTAL 340

                       330       340       350       360       370
                ....*....|....*....|....*....|....*....|....*....|..
gi 82541837 326 FWSMVAMIILLTWIGARPveDPYILTGQILTVTYFSYYILNPIIMKYWDKLL 377
Cdd:COG1290 341 GVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFLIVLPILAFIEKTK 390
CYTB MTH00086
cytochrome b; Provisional
 16-365 9.07e-124

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 360.79  E-value: 9.07e-124
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837   16 NNALVDLPTPSNISIWWNFGSLLGLCLIIQILTGLFLAMQYAPNIELSFNSVVHICRDVNMGWMLRTMHANGASFFFICI 95
Cdd:MTH00086   4 NSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837   96 YLHIGRGMYYGSYKLLPTWMMGVMILFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVWGGFAVDNAT 175
Cdd:MTH00086  84 YLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSAT 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837  176 LNRFFTFHFVLPFMILGMVMVHLLFLHQTGSNNPLGINSNMDKIPFHPYFTFKDIMGFIMMLMaLSMLVLYEPYMLGDPD 255
Cdd:MTH00086 164 LKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNIIFWLV-FIIFSLFYPFNLGDPE 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837  256 NFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILMLLPFSNksNFRSTqFYPINQFMFWSMVAMIIL 335
Cdd:MTH00086 243 MFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVN--NYTSC-LNKLNKFLVFSFIVVNVI 319

                        330       340       350
                 ....*....|....*....|....*....|
gi 82541837  336 LTWIGARPVEDPYILTGQILTVTYFSYYIL 365
Cdd:MTH00086 320 LSWLGQCLVEYPFLFLSQIFSFIYFFLILL 349
CYTB MTH00046
cytochrome b; Validated
 13-357 2.13e-89

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 273.40  E-value: 2.13e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837   13 KIANNALVDLPTPSNISIWWNFGSLLGLCLIIQILTGLFLAMQYAPNIELSFNSVVHICRDVNMGWMLRTMHANGASFFF 92
Cdd:MTH00046   3 SLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLF 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837   93 ICIYLHIGRGMYYGSYKLLPTWMMGVMILFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVWGGFAVD 172
Cdd:MTH00046  83 ILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVT 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837  173 NATLNRFFTFHFVLPFMILGMVMVHLLFLHQTGSNNPLGINSNM-DKIPFHPYFTFKDIMGFIMMLMALSMLVLYEPYML 251
Cdd:MTH00046 163 GVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGYsDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLV 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837  252 GDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIaLVMSIAILMLLPFSNKSNFRSTqfypINQFMFWSMVA 331
Cdd:MTH00046 243 LDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGGLV-LVLSFLFFLWVPTFNGSSVYSV----WRQVNFWLIVS 317

                        330       340
                 ....*....|....*....|....*.
gi 82541837  332 MIILLTWIGARPVEDPYILTGQILTV 357
Cdd:MTH00046 318 LFFSLSYLGGCHPEYPYLLISQLFSV 343
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 10-207 4.85e-86

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 259.22  E-value: 4.85e-86
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837  10 PLFKIANNALVDLPTPSNISIWWNFGSLLGLCLIIQILTGLFLAMQYAPNIELSFNSVVHICRDVNMGWMLRTMHANGAS 89
Cdd:cd00284   1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837  90 FFFICIYLHIGRGMYYGSYK--LLPTWMMGVMILFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVWG 167
Cdd:cd00284  81 MFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                       170       180       190       200
                ....*....|....*....|....*....|....*....|
gi 82541837 168 GFAVDNATLNRFFTFHFVLPFMILGMVMVHLLFLHQTGSN 207
Cdd:cd00284 161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
19-205 1.86e-77

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 236.89  E-value: 1.86e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837    19 LVDLPTPSNISIWWNFGSLLGLCLIIQILTGLFLAMQYAPNIELSFNSVVHICRDVNMGWMLRTMHANGASFFFICIYLH 98
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837    99 IGRGMYYG--SYKLLPTWMMGVMILFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVWGGFAVDNATL 176
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 82541837   177 NRFFTFHFVLPFMILGMVMVHLLFLHQTG 205
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 208-354 9.02e-52

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 169.36  E-value: 9.02e-52
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837 208 NPLGINSNMDKIPFHPYFTFKDIMGFIMMLMALSMLVLYEPYMLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPN 287
Cdd:cd00290   1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 82541837 288 KLGGVIALVMSIAILMLLPFSNKSNFRStQFYPINQFMFWSMVAMIILLTWIGARPVEDPYILTGQI 354
Cdd:cd00290  81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQL 146
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
89-254 1.11e-45

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 154.32  E-value: 1.11e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837    89 SFFFICIYLHIGRGMYYGSYKLLP--TWMMGVMILFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVW 166
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837   167 GGFAVDNATLNRFFTFHF-VLPFMILGMVMVHLLFLHQTGSNNPLGINSNMDKIPFHPYFTFKDIMGFIMMLMALSMLVL 245
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 82541837   246 YEPYMLGDP 254
Cdd:pfam13631 161 INPIWLGGP 169
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
259-359 4.90e-43

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 144.93  E-value: 4.90e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837   259 PANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILMLLPFSNKSNFRSTQFYPINQFMFWSMVAMIILLTW 338
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 82541837   339 IGARPVEDPYILTGQILTVTY 359
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
PRK03735 PRK03735
cytochrome b6; Provisional
 23-210 6.68e-38

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 135.99  E-value: 6.68e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837   23 PTPSNISIWWNFGSLLGLCLIIQILTGLFLAMQYAPNIELSFNSVVHICRDVNMGWMLRTMHANGASFFFICIYLHIGRG 102
Cdd:PRK03735  33 PAHHFSAFVYCFGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRV 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837  103 MYYGSYKlLP---TWMMGVMILFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVWGGFAVDNATLNRF 179
Cdd:PRK03735 113 FFTGGYK-KPrelNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRF 191

                        170       180       190
                 ....*....|....*....|....*....|..
gi 82541837  180 FTFH-FVLPFMILGMVMVHLLFLHQTGSNNPL 210
Cdd:PRK03735 192 FAIHvFFLPWALAVLMLAHFLMIRKQGISGPL 223
petB CHL00070
cytochrome b6
 25-210 2.18e-28

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 110.20  E-value: 2.18e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837   25 PSNISIWWNFGSLLGLCLIIQILTGLFLAMQYAPNIELSFNSVVHICRDVNMGWMLRTMHANGASFFFICIYLHIGRGMY 104
Cdd:CHL00070  27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837  105 YGSYKLlP---TWMMGVMILFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWVWGGFAVDNATLNRFFT 181
Cdd:CHL00070 107 TGGFKK-PrelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYS 185

                        170       180       190
                 ....*....|....*....|....*....|
gi 82541837  182 FH-FVLPFMILGMVMVHLLFLHQTGSNNPL 210
Cdd:CHL00070 186 LHtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 230-350 1.34e-12

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 65.20  E-value: 1.34e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837 230 IMGFIMMLMALSMLvlyEPYMLGDPdnfipANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILMLLPF-S 308
Cdd:COG5679  45 ILGTIALCIGLAVL---DPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFiE 116

                        90       100       110       120
                ....*....|....*....|....*....|....*....|...
gi 82541837 309 NKSNFRSTQFYPINQFMFwSMVAMIILLTWIGAR-PVEDPYIL 350
Cdd:COG5679 117 NVNKFQNPFRRPVATAVF-LFGTLVTLWLGIGAAlPIDKSLTL 158
petD CHL00058
cytochrome b6/f complex subunit IV
 230-307 1.63e-12

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 65.02  E-value: 1.63e-12
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 82541837  230 IMGFIMMLMALSMLvlyEPYMLGDPdnfipANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILMLLPF 307
Cdd:CHL00058  44 ILGTIACNVGLAVL---EPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPF 113
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 230-341 9.60e-12

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 62.51  E-value: 9.60e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82541837   230 IMGFIMMLMALSMLvlyEPYMLGDPdnfipANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILMLLPF-S 308
Cdd:TIGR01156  44 ILGTIACVVGLAVL---DPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFiE 115

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 82541837   309 NKSNFRSTQFYPINQ--FMFWSMVAMiilltWIGA 341
Cdd:TIGR01156 116 NVNKFQNPFRRPVATtvFLFGTVVAL-----WLGI 145
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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