NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|824465685|gb|AKI87260|]
View 

hypothetical protein [Escherichia phage PA36]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
HOK_GEF super family cl27487
Hok/gef family;
1-45 3.53e-05

Hok/gef family;


The actual alignment was detected with superfamily member PRK09759:

Pssm-ID: 452751  Cd Length: 50  Bit Score: 36.06  E-value: 3.53e-05
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*..
gi 824465685  1 MSQKSLI--TVTICMTVIFTIWMLHGSLCEFRLNLWGAEFAAFLQCK 45
Cdd:PRK09759  1 MPQKYRLlsLIVICFTLLFFTWMIRDSLCELHIKQGSYELAAFLACN 47
 
Name Accession Description Interval E-value
PRK09759 PRK09759
type I toxin-antitoxin system toxin HokA;
1-45 3.53e-05

type I toxin-antitoxin system toxin HokA;


Pssm-ID: 182063  Cd Length: 50  Bit Score: 36.06  E-value: 3.53e-05
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*..
gi 824465685  1 MSQKSLI--TVTICMTVIFTIWMLHGSLCEFRLNLWGAEFAAFLQCK 45
Cdd:PRK09759  1 MPQKYRLlsLIVICFTLLFFTWMIRDSLCELHIKQGSYELAAFLACN 47
HOK_GEF pfam01848
Hok/gef family;
6-44 1.67e-03

Hok/gef family;


Pssm-ID: 426473  Cd Length: 41  Bit Score: 31.58  E-value: 1.67e-03
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 824465685   6 LITVTICMTVIFTIWMLHGSLCEFRLNLWGAEFAAFLQC 44
Cdd:pfam01848  3 VALIVICITVLLFTLVTRKSLCELRIRQGQTEVAAFLAC 41
 
Name Accession Description Interval E-value
PRK09759 PRK09759
type I toxin-antitoxin system toxin HokA;
1-45 3.53e-05

type I toxin-antitoxin system toxin HokA;


Pssm-ID: 182063  Cd Length: 50  Bit Score: 36.06  E-value: 3.53e-05
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*..
gi 824465685  1 MSQKSLI--TVTICMTVIFTIWMLHGSLCEFRLNLWGAEFAAFLQCK 45
Cdd:PRK09759  1 MPQKYRLlsLIVICFTLLFFTWMIRDSLCELHIKQGSYELAAFLACN 47
HOK_GEF pfam01848
Hok/gef family;
6-44 1.67e-03

Hok/gef family;


Pssm-ID: 426473  Cd Length: 41  Bit Score: 31.58  E-value: 1.67e-03
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 824465685   6 LITVTICMTVIFTIWMLHGSLCEFRLNLWGAEFAAFLQC 44
Cdd:pfam01848  3 VALIVICITVLLFTLVTRKSLCELRIRQGQTEVAAFLAC 41
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH