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Conserved domains on  [gi|824464054|gb|AKI86332|]
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hypothetical protein [Escherichia phage PA11]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
pdsO super family cl37327
proteobacterial sortase system peptidoglycan-associated protein; A newly defined histidine ...
 36-80 1.03e-07

proteobacterial sortase system peptidoglycan-associated protein; A newly defined histidine kinase (TIGR03785) and response regulator (TIGR03787) gene pair occurs exclusively in Proteobacteria, mostly of marine origin, nearly all of which contain a subfamily 6 sortase (TIGR03784) and its single dedicated target protein (TIGR03788) adjacent to to the sortase. This protein family shows up in only in those species with the histidine kinase/response regulator gene pair, and often adjacent to that pair. It belongs to the pfam00691 domain family, which is the peptidoglycan-associated region of flagellar motor protein MotB, OmpA (whose N-terminal region forms an outer membrane beta barrel), and peptidoglycan-associated lipoprotein Pal. Its function is unknown. We assign the gene symbol pdsO, for Proteobacterial Dedicated Sortase system OmpA family protein. [Protein fate, Protein and peptide secretion and trafficking]


The actual alignment was detected with superfamily member TIGR03789:

Pssm-ID: 274783 [Multi-domain]  Cd Length: 243  Bit Score: 47.11  E-value: 1.03e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 824464054   36 QMAAQQKAQNKQNIGtgIGTGAAIGASVGGPVGAVAGAVIGGIAG 80
Cdd:TIGR03789  32 QETEQQEADQEALIG--LGSGALLGALVGGPVGAIIGGITGGLIG 74
 
Name Accession Description Interval E-value
pdsO TIGR03789
proteobacterial sortase system peptidoglycan-associated protein; A newly defined histidine ...
 36-80 1.03e-07

proteobacterial sortase system peptidoglycan-associated protein; A newly defined histidine kinase (TIGR03785) and response regulator (TIGR03787) gene pair occurs exclusively in Proteobacteria, mostly of marine origin, nearly all of which contain a subfamily 6 sortase (TIGR03784) and its single dedicated target protein (TIGR03788) adjacent to to the sortase. This protein family shows up in only in those species with the histidine kinase/response regulator gene pair, and often adjacent to that pair. It belongs to the pfam00691 domain family, which is the peptidoglycan-associated region of flagellar motor protein MotB, OmpA (whose N-terminal region forms an outer membrane beta barrel), and peptidoglycan-associated lipoprotein Pal. Its function is unknown. We assign the gene symbol pdsO, for Proteobacterial Dedicated Sortase system OmpA family protein. [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274783 [Multi-domain]  Cd Length: 243  Bit Score: 47.11  E-value: 1.03e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 824464054   36 QMAAQQKAQNKQNIGtgIGTGAAIGASVGGPVGAVAGAVIGGIAG 80
Cdd:TIGR03789  32 QETEQQEADQEALIG--LGSGALLGALVGGPVGAIIGGITGGLIG 74
 
Name Accession Description Interval E-value
pdsO TIGR03789
proteobacterial sortase system peptidoglycan-associated protein; A newly defined histidine ...
 36-80 1.03e-07

proteobacterial sortase system peptidoglycan-associated protein; A newly defined histidine kinase (TIGR03785) and response regulator (TIGR03787) gene pair occurs exclusively in Proteobacteria, mostly of marine origin, nearly all of which contain a subfamily 6 sortase (TIGR03784) and its single dedicated target protein (TIGR03788) adjacent to to the sortase. This protein family shows up in only in those species with the histidine kinase/response regulator gene pair, and often adjacent to that pair. It belongs to the pfam00691 domain family, which is the peptidoglycan-associated region of flagellar motor protein MotB, OmpA (whose N-terminal region forms an outer membrane beta barrel), and peptidoglycan-associated lipoprotein Pal. Its function is unknown. We assign the gene symbol pdsO, for Proteobacterial Dedicated Sortase system OmpA family protein. [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274783 [Multi-domain]  Cd Length: 243  Bit Score: 47.11  E-value: 1.03e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 824464054   36 QMAAQQKAQNKQNIGtgIGTGAAIGASVGGPVGAVAGAVIGGIAG 80
Cdd:TIGR03789  32 QETEQQEADQEALIG--LGSGALLGALVGGPVGAIIGGITGGLIG 74
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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