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Conserved domains on  [gi|823631354]
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Chain A, Portal protein

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
DUF935 super family cl19863
Protein of unknown function (DUF935); This family consists of several bacterial proteins of ...
67-381 8.62e-11

Protein of unknown function (DUF935); This family consists of several bacterial proteins of unknown function as well as the Bacteriophage Mu gp29 protein.


The actual alignment was detected with superfamily member COG4383:

Pssm-ID: 473237  Cd Length: 526  Bit Score: 63.81  E-value: 8.62e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823631354  67 IRSAKWYVEPASTDPEDIAIAAFIHAQLgiDDASVGKYPFGRLFAIYenayiYGMAAGEIVLTLgADGKLILDKIVPIHP 146
Cdd:COG4383   86 VLGLEWRVEPASDSAADKKAADFVREWL--ERLELEDLLFDLLDAIG-----KGFSVLEIIWET-DGGLWLPKDIEWRPP 157
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823631354 147 --FNIDEVlydeegGPKALKLsgevKGGSQFVSGLEIPIWKTVVFLHND-DGSFTGQSALRAAVPHWLAKRALI--LLIN 221
Cdd:COG4383  158 rwFRFDPD------GGNTLRL----RTKDGSAEGEPLPPFKFVVHRHKAkSGNPYRAGLLRVLAWPYLFKNYGVkdWAEF 227
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823631354 222 hgLERFmiGVPtLTIPKSVRQGTKQ-----WEAAKEIVKNFVqkprhGIIlPDDwkfDTVDLKSAMP--DAIPY---LTY 291
Cdd:COG4383  228 --LEKY--GLP-LRVGKYPPGASQDekdtlLRALAAIGSDAA-----AII-PEG---MEIEFLEAAKsgSADPYealADW 293
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823631354 292 HDAGIARA-LGIDfNTVQLNMGVQA-INIGEFVsltQQTII-SLQREFASAVNLYLIPKLVLPNWPSATRFPRLTFEMEE 368
Cdd:COG4383  294 CDRQISKAiLGQT-LTSEADGGSRAlGNVHNEV---REDILdADARQLAATLNRDLIRPLVALNFGPQARYPRFEFDTEE 369
                        330
                 ....*....|....*....
gi 823631354 369 RNDFSAAANL------MGM 381
Cdd:COG4383  370 PEDLKALAERdkklvdMGL 388
 
Name Accession Description Interval E-value
gp29 COG4383
Mu-like prophage protein gp29 [Mobilome: prophages, transposons];
67-381 8.62e-11

Mu-like prophage protein gp29 [Mobilome: prophages, transposons];


Pssm-ID: 443509  Cd Length: 526  Bit Score: 63.81  E-value: 8.62e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823631354  67 IRSAKWYVEPASTDPEDIAIAAFIHAQLgiDDASVGKYPFGRLFAIYenayiYGMAAGEIVLTLgADGKLILDKIVPIHP 146
Cdd:COG4383   86 VLGLEWRVEPASDSAADKKAADFVREWL--ERLELEDLLFDLLDAIG-----KGFSVLEIIWET-DGGLWLPKDIEWRPP 157
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823631354 147 --FNIDEVlydeegGPKALKLsgevKGGSQFVSGLEIPIWKTVVFLHND-DGSFTGQSALRAAVPHWLAKRALI--LLIN 221
Cdd:COG4383  158 rwFRFDPD------GGNTLRL----RTKDGSAEGEPLPPFKFVVHRHKAkSGNPYRAGLLRVLAWPYLFKNYGVkdWAEF 227
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823631354 222 hgLERFmiGVPtLTIPKSVRQGTKQ-----WEAAKEIVKNFVqkprhGIIlPDDwkfDTVDLKSAMP--DAIPY---LTY 291
Cdd:COG4383  228 --LEKY--GLP-LRVGKYPPGASQDekdtlLRALAAIGSDAA-----AII-PEG---MEIEFLEAAKsgSADPYealADW 293
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823631354 292 HDAGIARA-LGIDfNTVQLNMGVQA-INIGEFVsltQQTII-SLQREFASAVNLYLIPKLVLPNWPSATRFPRLTFEMEE 368
Cdd:COG4383  294 CDRQISKAiLGQT-LTSEADGGSRAlGNVHNEV---REDILdADARQLAATLNRDLIRPLVALNFGPQARYPRFEFDTEE 369
                        330
                 ....*....|....*....
gi 823631354 369 RNDFSAAANL------MGM 381
Cdd:COG4383  370 PEDLKALAERdkklvdMGL 388
 
Name Accession Description Interval E-value
gp29 COG4383
Mu-like prophage protein gp29 [Mobilome: prophages, transposons];
67-381 8.62e-11

Mu-like prophage protein gp29 [Mobilome: prophages, transposons];


Pssm-ID: 443509  Cd Length: 526  Bit Score: 63.81  E-value: 8.62e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823631354  67 IRSAKWYVEPASTDPEDIAIAAFIHAQLgiDDASVGKYPFGRLFAIYenayiYGMAAGEIVLTLgADGKLILDKIVPIHP 146
Cdd:COG4383   86 VLGLEWRVEPASDSAADKKAADFVREWL--ERLELEDLLFDLLDAIG-----KGFSVLEIIWET-DGGLWLPKDIEWRPP 157
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823631354 147 --FNIDEVlydeegGPKALKLsgevKGGSQFVSGLEIPIWKTVVFLHND-DGSFTGQSALRAAVPHWLAKRALI--LLIN 221
Cdd:COG4383  158 rwFRFDPD------GGNTLRL----RTKDGSAEGEPLPPFKFVVHRHKAkSGNPYRAGLLRVLAWPYLFKNYGVkdWAEF 227
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823631354 222 hgLERFmiGVPtLTIPKSVRQGTKQ-----WEAAKEIVKNFVqkprhGIIlPDDwkfDTVDLKSAMP--DAIPY---LTY 291
Cdd:COG4383  228 --LEKY--GLP-LRVGKYPPGASQDekdtlLRALAAIGSDAA-----AII-PEG---MEIEFLEAAKsgSADPYealADW 293
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823631354 292 HDAGIARA-LGIDfNTVQLNMGVQA-INIGEFVsltQQTII-SLQREFASAVNLYLIPKLVLPNWPSATRFPRLTFEMEE 368
Cdd:COG4383  294 CDRQISKAiLGQT-LTSEADGGSRAlGNVHNEV---REDILdADARQLAATLNRDLIRPLVALNFGPQARYPRFEFDTEE 369
                        330
                 ....*....|....*....
gi 823631354 369 RNDFSAAANL------MGM 381
Cdd:COG4383  370 PEDLKALAERdkklvdMGL 388
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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