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Conserved domains on  [gi|823079441|gb|AKI26863|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Pteronotropis euryzonus]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475913)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
1-348 0e+00

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 569.05  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441   1 MNPYVLITLLSSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWI 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441  81 SGEWDMVNMSNPIATAMILAALALKIGLAPMHFWMPEVLQGLDLSTGLILSTWQKLAPLALIIQTAPTfHPLLLTTLGLM 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441 161 SALVGGWGGLNQTQLRKVLAYSSIAHMGWMIIVLQYAPQLTLLALLTYILMTSAAFLTLKLSYATKISTLATAWSKSPLL 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441 241 TATTALVLLSLGGLPPLTGFMPKWLILQEMVKQGLPLTATVMALTALISLYFYLRLCYTMTLTISPNTVTSVTPWRTQTN 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319
                        330       340
                 ....*....|....*....|....*...
gi 823079441 321 QASTPLALSTVLALGLLPITPAIMM*TT 348
Cdd:MTH00135 320 QLTLPLAISTTATLMLLPLTPAILALLT 347
 
Name Accession Description Interval E-value
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
1-348 0e+00

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 569.05  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441   1 MNPYVLITLLSSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWI 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441  81 SGEWDMVNMSNPIATAMILAALALKIGLAPMHFWMPEVLQGLDLSTGLILSTWQKLAPLALIIQTAPTfHPLLLTTLGLM 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441 161 SALVGGWGGLNQTQLRKVLAYSSIAHMGWMIIVLQYAPQLTLLALLTYILMTSAAFLTLKLSYATKISTLATAWSKSPLL 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441 241 TATTALVLLSLGGLPPLTGFMPKWLILQEMVKQGLPLTATVMALTALISLYFYLRLCYTMTLTISPNTVTSVTPWRTQTN 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319
                        330       340
                 ....*....|....*....|....*...
gi 823079441 321 QASTPLALSTVLALGLLPITPAIMM*TT 348
Cdd:MTH00135 320 QLTLPLAISTTATLMLLPLTPAILALLT 347
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
4-300 5.08e-32

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 124.84  E-value: 5.08e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441   4 YVLITLLSSLGLgtTLTFASSHWLLAWMGLEINTLAIIPLMA-QHHHPRAVEATTKYFLTQATAAAMILF--------AS 74
Cdd:COG1007  104 FYALLLFATLGM--MLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgisllygaTG 181
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441  75 TTN-AWISGEWDMVNMSNP---IATAMILAALALKIGLAPMHFWMPEVLQGLDLSTGLILSTWQKLAPLALII----QTA 146
Cdd:COG1007  182 SLNlAGIAAALAAGGANSPlllLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLrllvEAF 261
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441 147 PTFHPLLLTTLGLMSAL---VGGWGGLNQTQLRKVLAYSSIAHMGWMIIVL----QYAPQLTLLALLTYILMTSAAFLTL 219
Cdd:COG1007  262 PGLAADWQLLLAVLAVLsmtVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLaagtPLGVSAALFYLLAYLFMNLGAFAVI 341
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441 220 -----KLSYATKISTLATAWSKSPLLTATTALVLLSLGGLPPLTGFMPKWLILQEMVKQGLPLTATVMALTALISLYFYL 294
Cdd:COG1007  342 lllsrKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYL 421

                 ....*.
gi 823079441 295 RLCYTM 300
Cdd:COG1007  422 RVVKAM 427
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
23-268 4.75e-23

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 97.00  E-value: 4.75e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441   23 SSHWLLAWMGLEINTLAIIPLMA-QHHHPRAVEATTKYFLTQATAAAMILFASTTNAWISGEWDMVNMSNP--------- 92
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKAltgglnssg 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441   93 --IATAMILAALALKIGLAPMHFWMPEVLQGLDLSTGLIL-STWQKLAPLALI------IQTAPTFHPLLLTtLGLMSAL 163
Cdd:pfam00361  81 llLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIrrsllyLPSSPFIQQILLI-LAIISML 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441  164 VGGWGGLNQTQLRKVLAYSSIAHMGWMIIVL----QYAPQLTLLALLTYILMTSAAFL-----TLKLSYATKISTLATAW 234
Cdd:pfam00361 160 LGSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLA 239
                         250       260       270
                  ....*....|....*....|....*....|....
gi 823079441  235 SKSPLLTATTALVLLSLGGLPPLTGFMPKWLILQ 268
Cdd:pfam00361 240 KTMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
4-345 5.02e-22

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 96.56  E-value: 5.02e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441    4 YVLITLLSSLGLGttLTFASSHWLLAWMGLEINTLAIIPLMA-QHHHPRAVEATTKYFLTQATAAAMILFASTTNAWISG 82
Cdd:TIGR01770 104 FYILLLFALLGIF--LLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTG 181
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441   83 EWDMVNMSNP------------IATAMILAALALKIGLAPMHFWMPEVLQGLDLSTGLILSTWQKLAPLALIIQT----- 145
Cdd:TIGR01770 182 SLNFEDLLLFlsngmlnislllLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLflyil 261
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441  146 ---APTFHPLLLTtLGLMSALVGGWGGLNQTQLRKVLAYSSIAHMGWMIIVL----QYAPQLTLLALLTYILMTSAAFLT 218
Cdd:TIGR01770 262 fgfSEAWQIFLAI-IAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLlagtLEGIKAVLFYIFIYALMSLGAFGV 340
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441  219 LKLSYATK------ISTLATAWSKSPLLTATTALVLLSLGGLPPLTGFMPKWLILQEMVKQGLPLTATVMALTALISLYF 292
Cdd:TIGR01770 341 LSLLRSYKdewieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFY 420
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|...
gi 823079441  293 YLRLCYTMTLTISPNTVTSVTpwrtqTNQASTPLALSTVLALGLLPITPAIMM 345
Cdd:TIGR01770 421 YLRVVKVMYFDKPERRIPSNP-----QSKAQSLLLSISALFILFLGLFPSLIL 468
 
Name Accession Description Interval E-value
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
1-348 0e+00

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 569.05  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441   1 MNPYVLITLLSSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWI 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441  81 SGEWDMVNMSNPIATAMILAALALKIGLAPMHFWMPEVLQGLDLSTGLILSTWQKLAPLALIIQTAPTfHPLLLTTLGLM 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441 161 SALVGGWGGLNQTQLRKVLAYSSIAHMGWMIIVLQYAPQLTLLALLTYILMTSAAFLTLKLSYATKISTLATAWSKSPLL 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441 241 TATTALVLLSLGGLPPLTGFMPKWLILQEMVKQGLPLTATVMALTALISLYFYLRLCYTMTLTISPNTVTSVTPWRTQTN 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319
                        330       340
                 ....*....|....*....|....*...
gi 823079441 321 QASTPLALSTVLALGLLPITPAIMM*TT 348
Cdd:MTH00135 320 QLTLPLAISTTATLMLLPLTPAILALLT 347
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
1-345 2.94e-149

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 423.95  E-value: 2.94e-149
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441   1 MNPYVLITLLSSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWI 80
Cdd:MTH00070   1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441  81 SGEWDMVNMSNPIATAMILAALALKIGLAPMHFWMPEVLQGLDLSTGLILSTWQKLAPLALIIQTAPTFHPLLLTTLGLM 160
Cdd:MTH00070  81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441 161 SALVGGWGGLNQTQLRKVLAYSSIAHMGWMIIVLQYAPQLTLLALLTYILMTSAAFLTLKLSYATKISTLATAWSKSPLL 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441 241 TATTALVLLSLGGLPPLTGFMPKWLILQEMVKQGLPLTATVMALTALISLYFYLRLCYTMTLTISPNTVTSVTPWRtQTN 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWR-FKN 319
                        330       340
                 ....*....|....*....|....*
gi 823079441 321 QASTPLALSTVLALGLLPITPAIMM 345
Cdd:MTH00070 320 KTNNLLSLTIILSLMLLPITPTILN 344
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
1-347 2.86e-130

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 376.09  E-value: 2.86e-130
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441   1 MNPYVLITLLSSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWI 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441  81 SGEWDMVNMSNPIATAMILAALALKIGLAPMHFWMPEVLQGLDLSTGLILSTWQKLAPLALIIQTAPTFHPLLLTTLGLM 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441 161 SALVGGWGGLNQTQLRKVLAYSSIAHMGWMIIVLQYAPQLTLLALLTYILMTSAAFLTLKLSYATKISTLATAWSKSPLL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441 241 TATTALVLLSLGGLPPLTGFMPKWLILQEMVKQGLPLTATVMALTALISLYFYLRLCYTMTLTISPNTVTSVTPWRTQTN 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320
                        330       340
                 ....*....|....*....|....*..
gi 823079441 321 QaSTPLALSTVLALGLLPITPAIMM*T 347
Cdd:MTH00112 321 K-NTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
1-347 1.04e-123

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 359.16  E-value: 1.04e-123
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441   1 MNPYVLITLLSSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWI 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441  81 SGEWDMVNMSNPIATAMILAALALKIGLAPMHFWMPEVLQGLDLSTGLILSTWQKLAPLALIIQTAPTFHPLLLTTLGLM 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441 161 SALVGGWGGLNQTQLRKVLAYSSIAHMGWMIIVLQYAPQLTLLALLTYILMTSAAFLTLKLSYATKISTLATAWSKSPLL 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441 241 TATTALVLLSLGGLPPLTGFMPKWLILQEMVKQGLPLTATVMALTALISLYFYLRLCYTMTLTISPNTVTSVTPWRTQTN 320
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320
                        330       340
                 ....*....|....*....|....*..
gi 823079441 321 QASTPLALSTVLALGLLPITPAIMM*T 347
Cdd:MTH00105 321 KPMTLLPTLIILSTMLLPLTPMLSILE 347
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
1-348 5.41e-112

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 329.62  E-value: 5.41e-112
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441   1 MNPYVLITLLSSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWI 80
Cdd:MTH00200   1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441  81 SGEWDMVNMSNPIATAMILAALALKIGLAPMHFWMPEVLQGLDLSTGLILSTWQKLAPLALIIQTAPTFHPLLLTTLGLM 160
Cdd:MTH00200  81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441 161 SALVGGWGGLNQTQLRKVLAYSSIAHMGWMIIVLQYAPQLTLLALLTYILMTSAAFLTLKLSYATKISTLATAWSKSPLL 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441 241 TATTALVLLSLGGLPPLTGFMPKWLILQEMVKQGLPLTATVMALTALISLYFYLRLCYTMTLTISPNTVTSVTPWRTQTN 320
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320
                        330       340
                 ....*....|....*....|....*...
gi 823079441 321 qASTPLALSTVLALGLLPITPAIMM*TT 348
Cdd:MTH00200 321 -SNLLVGLLLLLSILGLPLTPQLLFLFF 347
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
1-340 3.13e-93

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 281.82  E-value: 3.13e-93
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441   1 MNPYVLITLLSSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWI 80
Cdd:MTH00041   1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441  81 SGEWDMVNMSNPIATAMILAALALKIGLAPMHFWMPEVLQGLDLSTGLILSTWQKLAPLALIIQTAPTFHPLLLTTLGLM 160
Cdd:MTH00041  81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441 161 SALVGGWGGLNQTQLRKVLAYSSIAHMGWMIIVLQYAPQLTLLALLTYILMTSAAFLTLKLSYATKISTLATAWSKSPLL 240
Cdd:MTH00041 161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441 241 TATTALVLLSLGGLPPLTGFMPKWLILQEMVKQGLPLTATVMALTALISLYFYLRLCYTMTLTISPNTVTSVTPWRTQTN 320
Cdd:MTH00041 241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGN 320
                        330       340
                 ....*....|....*....|....*
gi 823079441 321 QASTPLALS-----TVLALGLLPIT 340
Cdd:MTH00041 321 ITVYGVILSilssiSILGLLLIPLF 345
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
1-308 8.09e-59

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 192.73  E-value: 8.09e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441   1 MNPYVLItLLSSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWI 80
Cdd:MTH00160   3 MNSSKLL-FLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLN 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441  81 SgewdmvNMSNPIATAMILAALALKIGLAPMHFWMPEVLQGLDLSTGLILSTWQKLAPLALIIQTaptFHPLLLTTLGLM 160
Cdd:MTH00160  82 L------MLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIIL 152
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441 161 SALVGGWGGLNQTQLRKVLAYSSIAHMGWMIIVLQYAPQLTLLALLTYILMTSAAFLTLKLSYATKISTLATAWSKSPLL 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 823079441 241 TATTALVLLSLGGLPPLTGFMPKWLILQEMVKQGLPLTATVMALTALISLYFYLRLCYTMTLTISPNT 308
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKN 300
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
10-302 7.82e-50

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 169.30  E-value: 7.82e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441  10 LSSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWISGEWDMvnm 89
Cdd:MTH00144  10 LFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFS--- 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441  90 snpiaTAMILAALALKIGLAPMHFWMPEVLQGLDLSTGLILSTWQKLAPLALIIQTAPTFHPL-LLTTLGLMSALVGGWG 168
Cdd:MTH00144  87 -----MSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLAyLLCVISVLSALVGSIG 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441 169 GLNQTQLRKVLAYSSIAHMGWMIIVLQYAPQLTLLALLTYILmtSAAFLTLKLSYATKISTLATAWSKSPLLTATTALVL 248
Cdd:MTH00144 162 GLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIV--SSGFLFFSLWSGDSGSMKDLGSLKPSYKTGLSIISL 239
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 823079441 249 LSLGG-LPPLTGFMPKWLILQEMVKQGLPLTATVMALTALISLYFYLRLCYTMTL 302
Cdd:MTH00144 240 LLSLGgLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFL 294
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
11-338 1.97e-45

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 158.02  E-value: 1.97e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441  11 SSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNawisgeWDMVNMS 90
Cdd:MTH00011  13 STMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTMM------WSFPSLL 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441  91 NPIATAMILAALALKIGLAPMHFWMPEVLQGLDLSTGLILSTWQKLAPLALIIQTAPTFHPLLLTTLGLMSALVGGWGGL 170
Cdd:MTH00011  87 KNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGGLGGM 166
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441 171 NQTQLRKVLAYSSIAHMGWMIIVLQYAPQLTLLALLTYILMTSAAFLTLKLSYATKISTLATAWSKSPLLTATTALVLLS 250
Cdd:MTH00011 167 NQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLS 246
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441 251 LGGLPPLTGFMPKWLILQEMVKQGLPLTATVMALTALISLYFYLRLCYTMTlTISPNTVTSVTPWRTQTNQASTPLALST 330
Cdd:MTH00011 247 LGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNFM-YLSPTFSSLKSAPYEPKTKILISMCTLS 325

                 ....*...
gi 823079441 331 vlaLGLLP 338
Cdd:MTH00011 326 ---LGLIP 330
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
9-299 1.12e-42

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 150.59  E-value: 1.12e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441   9 LLSSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFAsttNAWISGEWDMVN 88
Cdd:MTH00197   3 FLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMG---GSLSFSNLYLSL 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441  89 MSNpiatAMILAALALKIGLAPMHFWMPEVLQGLDLSTGLILSTWQKLAPLalIIQTAPTFHPLLLTTLGLMSALVGGWG 168
Cdd:MTH00197  80 LSV----VLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPL--LILAFNSSSFMGLLICSVLSSLIGGIG 153
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441 169 GLNQTQLRKVLAYSSIAHMGWMIIVLQYAPQLTLLALLTYILMTSAAFLTLKLSYATKISTLATAWSKSPLLTATTALVL 248
Cdd:MTH00197 154 GMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSF 233
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 823079441 249 LSLGGLPPLTGFMPKWLILQEMVKQGLPLTATVMALTALISLYFYLRLCYT 299
Cdd:MTH00197 234 LSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYK 284
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
4-300 5.08e-32

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 124.84  E-value: 5.08e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441   4 YVLITLLSSLGLgtTLTFASSHWLLAWMGLEINTLAIIPLMA-QHHHPRAVEATTKYFLTQATAAAMILF--------AS 74
Cdd:COG1007  104 FYALLLFATLGM--MLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgisllygaTG 181
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441  75 TTN-AWISGEWDMVNMSNP---IATAMILAALALKIGLAPMHFWMPEVLQGLDLSTGLILSTWQKLAPLALII----QTA 146
Cdd:COG1007  182 SLNlAGIAAALAAGGANSPlllLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLrllvEAF 261
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441 147 PTFHPLLLTTLGLMSAL---VGGWGGLNQTQLRKVLAYSSIAHMGWMIIVL----QYAPQLTLLALLTYILMTSAAFLTL 219
Cdd:COG1007  262 PGLAADWQLLLAVLAVLsmtVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLaagtPLGVSAALFYLLAYLFMNLGAFAVI 341
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441 220 -----KLSYATKISTLATAWSKSPLLTATTALVLLSLGGLPPLTGFMPKWLILQEMVKQGLPLTATVMALTALISLYFYL 294
Cdd:COG1007  342 lllsrKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYL 421

                 ....*.
gi 823079441 295 RLCYTM 300
Cdd:COG1007  422 RVVKAM 427
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
15-296 3.63e-28

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 112.43  E-value: 3.63e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441  15 LGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHP-RAVEATTKYFLTQATAAAMILFASTTNAWISGE---------- 83
Cdd:MTH00196   4 LGILCLISSSNWLSVYLAIELQTLSLFILIAQNRGSgYSAEAGLKYFVLGALSSGLFLFGCALLCGTTGGlhlsyinlvl 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441  84 ---WDMVNMSNPIATAMILAALALKIGLAPMHFWMPEVLQGLDLSTGLILSTWQKLAPLALIIQTAPTFHPLLLttLGLM 160
Cdd:MTH00196  84 nsgQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVNILLI--GGLF 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441 161 SALVGGWGGLNQTQLRKVLAYSSIAHMGWMIIVLQYAP----QLTLLALLTYILMTSAAFLTLkLSYATKISTL---ATA 233
Cdd:MTH00196 162 SLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSfesiQASLVYLFIYIIMSICVFSII-LALNVYKNLIiefSGL 240
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 823079441 234 WSKSPLLTATTALVLLSLGGLPPLTGFMPKWLILQEMVKQGLPLTATVMALTALISLYFYLRL 296
Cdd:MTH00196 241 SRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
4-338 5.22e-27

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 110.68  E-value: 5.22e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441   4 YVLItLLSSLGLGttLTFASSHWLLAWMGLEINTLAIIPLMAQH-HHPRAVEATTKYFLTQATAAAMILF--------AS 74
Cdd:PRK05777 106 YLLV-LFALLGMM--VMVSANDLLTLFLGLELLSLPLYALAALRrDRRRSLEAAIKYFVLGALASGFLLYgmsllygaTG 182
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441  75 TTNAWISGEWDMVNMSNP----IATAMILAALALKIGLAPMHFWMPEVLQGLDLSTGLILSTWQKLAPLALII------- 143
Cdd:PRK05777 183 SLSFAGIAKALADGSGNSllllFGLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLLrllvvaf 262
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441 144 -QTAPTFHPLLlTTLGLMSALVGGWGGLNQTQLRKVLAYSSIAHMGWMIIVL----QYAPQLTLLALLTYILMTSAAF-- 216
Cdd:PRK05777 263 gGLSEDWQQVL-AIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLaagtAEGYSAVLFYLLAYLFMTLGAFgv 341
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441 217 ---LTLKLSYATKISTLATAWSKSPLLTATTALVLLSLGGLPPLTGFMPKWLILQEMVKQGLPLTATVMALTALISLYFY 293
Cdd:PRK05777 342 islLRRKGGEAESISDFAGLSKRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYY 421
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*
gi 823079441 294 LRLCYTMTLtiSPNTVTSVTPWRTQTNQASTPLALSTVLALGLLP 338
Cdd:PRK05777 422 LRVIKLMYF--DEPPRDAPVNWPLSAGGAVLSVSALLVLVLGIFP 464
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
5-296 4.97e-25

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 105.10  E-value: 4.97e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441   5 VLITLLSSLglgttLTFASSHWLLAWMGLEINTLAIIPLMA-QHHHPRAVEATTKYFLTQATAAAMILFASTTNAWISGE 83
Cdd:MTH00199 103 ILIVALGSL-----LLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGE 177
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441  84 WDM----VNMSNPIATAMILAALALKIGLAPMHFWMPEVLQGLDLSTGLILSTWQKLAPLALIIQTAPTFHPLLLTtlGL 159
Cdd:MTH00199 178 TSIqginSILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLIC--AV 255
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441 160 MSALVGGWGGLNQTQLRKVLAYSSIAHMGWMIIVLQYAP----QLTLLALLTYILMTSAAF---LTLKLSYATkISTLAT 232
Cdd:MTH00199 256 LSIIYGAIGALNQTKIKRLLAYSGIGHMGFILFGVAIGSfesiQASLIYMIIYVIMSICSFsiiLSLKLTKGL-IVEVSG 334
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 823079441 233 AWSKSPLLTATTALVLLSLGGLPPLTGFMPKWLILQEMVKQGLPLTATVMALTALISLYFYLRL 296
Cdd:MTH00199 335 LSRKNPVIALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
23-268 4.75e-23

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 97.00  E-value: 4.75e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441   23 SSHWLLAWMGLEINTLAIIPLMA-QHHHPRAVEATTKYFLTQATAAAMILFASTTNAWISGEWDMVNMSNP--------- 92
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKAltgglnssg 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441   93 --IATAMILAALALKIGLAPMHFWMPEVLQGLDLSTGLIL-STWQKLAPLALI------IQTAPTFHPLLLTtLGLMSAL 163
Cdd:pfam00361  81 llLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIrrsllyLPSSPFIQQILLI-LAIISML 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441  164 VGGWGGLNQTQLRKVLAYSSIAHMGWMIIVL----QYAPQLTLLALLTYILMTSAAFL-----TLKLSYATKISTLATAW 234
Cdd:pfam00361 160 LGSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLA 239
                         250       260       270
                  ....*....|....*....|....*....|....
gi 823079441  235 SKSPLLTATTALVLLSLGGLPPLTGFMPKWLILQ 268
Cdd:pfam00361 240 KTMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
4-345 5.02e-22

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 96.56  E-value: 5.02e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441    4 YVLITLLSSLGLGttLTFASSHWLLAWMGLEINTLAIIPLMA-QHHHPRAVEATTKYFLTQATAAAMILFASTTNAWISG 82
Cdd:TIGR01770 104 FYILLLFALLGIF--LLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTG 181
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441   83 EWDMVNMSNP------------IATAMILAALALKIGLAPMHFWMPEVLQGLDLSTGLILSTWQKLAPLALIIQT----- 145
Cdd:TIGR01770 182 SLNFEDLLLFlsngmlnislllLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLflyil 261
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441  146 ---APTFHPLLLTtLGLMSALVGGWGGLNQTQLRKVLAYSSIAHMGWMIIVL----QYAPQLTLLALLTYILMTSAAFLT 218
Cdd:TIGR01770 262 fgfSEAWQIFLAI-IAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLlagtLEGIKAVLFYIFIYALMSLGAFGV 340
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441  219 LKLSYATK------ISTLATAWSKSPLLTATTALVLLSLGGLPPLTGFMPKWLILQEMVKQGLPLTATVMALTALISLYF 292
Cdd:TIGR01770 341 LSLLRSYKdewieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFY 420
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|...
gi 823079441  293 YLRLCYTMTLTISPNTVTSVTpwrtqTNQASTPLALSTVLALGLLPITPAIMM 345
Cdd:TIGR01770 421 YLRVVKVMYFDKPERRIPSNP-----QSKAQSLLLSISALFILFLGLFPSLIL 468
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
15-300 1.72e-21

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 94.44  E-value: 1.72e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441  15 LGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWISGEWDMVNMSNPIA 94
Cdd:COG0651  118 AGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAARLA 197
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441  95 T----------AMILAALALKIGLAPMHFWMPE-----------VLQGLDLSTGL--ILSTWQklapLALIIQTAPTFHP 151
Cdd:COG0651  198 EldpglllaafALLLVGFGIKAALFPLHFWLPDaypaapspvsaLLSGLLTKVGVyaILRVLT----LLFGADPALFLGT 273
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441 152 LLLTtLGLMSALVGGWGGLNQTQLRKVLAYSSIAHMGWMIIVLQYAPQLTLLALLTYI----LMTSAAFLT----LKLSY 223
Cdd:COG0651  274 LLLV-LGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLlnhaLAKALLFLAagaiERATG 352
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 823079441 224 ATKISTLATAWSKSPLLTATTALVLLSLGGLPPLTGFMPKWLILQEMVKQGLPLTATVMALTALISLYFYLRLCYTM 300
Cdd:COG0651  353 TRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRIFGRA 429
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
13-314 7.40e-15

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 75.67  E-value: 7.40e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441  13 LGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAV---------EATTKYFLTQATAAAMILFASTTNAWISGE 83
Cdd:MTH00198 197 VGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGN 276
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441  84 WDMVN--MSNPIATA------------MILAALALKIGLAPMHFWMPEVLQGLDLSTGLILSTWQKLapLALIIQTAPTF 149
Cdd:MTH00198 277 EGMLGtiLSATLETTnielrqgslgylFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--TVYILLTSLVI 354
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441 150 HPLLLTTLGLMSALVGGWGGLNQTQLRKVLAYSSIAHMGWMIIVLQYAPQLTLLALLTYILMtsaaFLTLKLSYATKIST 229
Cdd:MTH00198 355 TSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQASWTYAVT----YLVSALASFTVICT 430
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441 230 LATAWSKS-----------------------------PLLTATTALVLLSLGGLPPLTGFMPKWLILQEMVKQGLPLTAT 280
Cdd:MTH00198 431 LEEFGTRTptsrqrdgsfgnynlvrrlvdltilsrgqPYIAFSLAIVFLSLAGIPPLLGFLGKWFILVGSIKIAFSSSLS 510
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|.
gi 823079441 281 VMALTAL-------ISLYFYLRLCYTMTLTISPNTVTSVTP 314
Cdd:MTH00198 511 IYYLVALfaiictcISAFYYIRIVATIYFNFTRPLIKTKTP 551
ndhB CHL00049
NADH dehydrogenase subunit 2
51-332 2.06e-14

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 73.88  E-value: 2.06e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441  51 RAVEATTKYFLTQATAAAMILFASTTNAWISGE----WDMVN------MSNP----IATAMILAALALKIGLAPMHFWMP 116
Cdd:CHL00049 159 RSNEATMKYLLMGGASSSILVYGFSWLYGLSGGeielQEIVNglintqMYNSpgisIALIFITVGIGFKLSLAPFHQWTP 238
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441 117 EVLQGLDLSTGLILSTWQKLAPLALIIQTAPTFHP-------LLLTTLGLMSALVGGWGGLNQTQLRKVLAYSSIAHMGW 189
Cdd:CHL00049 239 DVYEGSPTPVVAFLSVTSKVAASALATRIFDIPFYfssnewhLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGY 318
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441 190 MIIVL-------QYAPQLTLLalLTYILMTSAAFLTLKL----SYATKISTLATAWSKSPLLTATTALVLLSLGGLPPLT 258
Cdd:CHL00049 319 VIIGIivgdsndGYASMITYM--LFYIFMNLGTFACIVLfglrTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGIPPLA 396
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 823079441 259 GFMPKWLILQEMVKQGLPLTATVMALTALISLYFYLRLCYTMTLTISPNTVTSVTPWRTQTNQASTPLALSTVL 332
Cdd:CHL00049 397 GFFGKLYLFWCGWQAGLYFLVSIGLLTSVISIYYYLKIIKLLMTGRNQEITPYVRNYRRSPLRSNNSIELSMIV 470
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-300 2.47e-14

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 73.93  E-value: 2.47e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441  50 PRAVEATTKYFLTQATAAAMILFASTTNAWIS-GEWDMVNMSNPIATA----------MILAALALKIGLAPMHFWMPEV 118
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYGSSLLYGLSgGSTQLSAIALALITSpslglalalvFVIAGIAFKISAVPFHQWTPDV 236
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441 119 LQGLDLSTGLILSTWQKLAPLALIIQTAPTFHP-------LLLTTLGLMSALVGGWGGLNQTQLRKVLAYSSIAHMGWMI 191
Cdd:PRK02504 237 YEGSPTPVVAFLSVGSKAAGFALAIRLLVTAFPsfdeqwkLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVM 316
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441 192 IVLQYAPQ----LTLLALLTYILMTSAAFLTLKL-SYAT---KISTLATAWSKSPLLTATTALVLLSLGGLPPLTGFMPK 263
Cdd:PRK02504 317 IGLVAGTEagyaSMVFYLLAYLFMNLGAFACVILfSLRTgtdQISDYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGFFGK 396
                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 823079441 264 WLILQEMVKQGLPLTATVMALTALISLYFYLRLCYTM 300
Cdd:PRK02504 397 IYLFWAGWQAGLYLLVLVGLVTSVISIYYYIRVIKMM 433
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
33-300 5.71e-12

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 66.44  E-value: 5.71e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441  33 LEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWISGEWDMVNMSNP--------IATAMILAALAL 104
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLAGAlaenptvvTAFGFVLLALAL 214
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441 105 KIGLAPMHFWMPEVLQGL-DLSTGLILSTWQKLAPLALIIQTAPTFHP---------LLLTTLGLMSALVGGWGGLNQTQ 174
Cdd:PRK08375 215 KAAVFPLHTWLPRAYPAApPVVTALLSGLVTKVAVYALIRIYFTVFGGdfrfalglgWLLAVLALLSMLVGSLAALGQDD 294
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441 175 LRKVLAYSSIAHMGWMIIVLQYAPQLTLLALLTYI----LMTSAAFLTLKLSYAT----KISTLATAWSKSPLLTATTAL 246
Cdd:PRK08375 295 VKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLlhhaLMKGALFLAAGAIEVTygtrRLSELSGLGRRMPLTAAAFAV 374
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 823079441 247 VLLSLGGLPPLTGFMPKWLILQEMVKQGLPLTATVMALTALISLYFYLRLCYTM 300
Cdd:PRK08375 375 ASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWYRA 428
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
44-300 9.18e-12

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 65.76  E-value: 9.18e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441  44 MAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWISGEWDMVNMS----------------NPIATAMILAALAL--- 104
Cdd:PRK12667 154 AYYRDRGDAVEAAIKYALIGAVGTTLYFLALAFLYATFGTLNMADLSakirglsfpltgglagNPPLALGVALALALwaf 233
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441 105 --KIGLAPMHFWMPEV-----------LQGLDLSTG---------LILSTWQKLAPLALIIQtaptfhpLLLTTLGLMSA 162
Cdd:PRK12667 234 tiKAAIFPNHFWLPDAhpaapspvsamLSGLVVNVGayaiirflyTIFGISPSLIDFRAALS-------PILIILGAVSA 306
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441 163 LVGGWGGLNQTQLRKVLAYSSIAHMGWMIIVLQYAPQLTLLALLTYIL----------MTSAAFltLKLSYATKISTLAT 232
Cdd:PRK12667 307 IIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIInhaiaksllfLASGVF--IHAAGTRDIDELAG 384
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 823079441 233 AWSKSPLLTATTALVLLSLGGLPPLTGFMPKWLILQEMVKQGLPLTATVMALTALISLYFYLRLCYTM 300
Cdd:PRK12667 385 LGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRAWYSL 452
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
291-341 1.94e-10

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 55.73  E-value: 1.94e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 823079441  291 YFYLRLCYTMTLTISPNTVTSVTPWRTQTNQASTPLALSTVLALGLLPITP 341
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTLLLPTLTTLSILLLPLTP 51
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
33-192 2.38e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 58.57  E-value: 2.38e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441  33 LEINTLAIIPLMAQHHH-PRAVEATTKYFLTQATAAAMILFASttnAWISGEWDMVNMS-------------NPIATAMI 98
Cdd:PRK08376 150 LEIMSIASYALVAFRNDtWEAIEAGIKYMFVGSLASSMVLLGI---ALLYGQYGTLNMAylavkmsenptvvAKIALALF 226
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441  99 LAALALKIGLAPMHFWMPEVLQGL--DLSTGLILSTWQKLAPLALIIQT--APTFHPL----LLTTLGLMSALVGGWGGL 170
Cdd:PRK08376 227 IAGLAMKSGAVPVHMWLPDAYPAApsSISAMLLVIKQAGLYALARVLFSiyGPAINLAtvgwVIIILGCLTMFVGVAMAV 306
                        170       180
                 ....*....|....*....|..
gi 823079441 171 NQTQLRKVLAYSSIAHMGWMII 192
Cdd:PRK08376 307 VQKDVKRLLAYHSVSQIGYMLL 328
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
4-298 2.83e-08

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 54.95  E-value: 2.83e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441    4 YVLITLLSSLGLGTtltFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWISGE 83
Cdd:TIGR01972 109 YALLLLLEAGVIGV---FLALDLFLFYVFWEAMLIPMYLLIGVWGGPNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGG 185
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441   84 W----DMVNMSNPIATAMIL-----AALALKIGLAPMHFWMPEV-LQGLDLSTGLILSTWQKLAPLALIIQTAPTF---- 149
Cdd:TIGR01972 186 TfdllELLNLPLPFGVQTWLflaffIAFAVKVPLFPLHTWLPDAhVEAPTAGSVILAGVLLKMGTYGFLRFNLPLFpdas 265
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441  150 --HPLLLTTLGLMSALVGGWGGLNQTQLRKVLAYSSIAHMGWMIIVL----QYAPQLTLLALLTYILMTSAAFLTLKLSY 223
Cdd:TIGR01972 266 lyFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLGIfsfnELGISGAVFQMISHGLITAALFLLVGVLY 345
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441  224 ----ATKISTLATAWSKSPLLTATTALVLLSLGGLPPLTGFMPKWLILQEMVKQGLPLT---ATVMALTALISLYFYLRL 296
Cdd:TIGR01972 346 erahTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFLILLGSFKVNPVVAflaALGIVLAAAYMLTLYKRV 425

                  ..
gi 823079441  297 CY 298
Cdd:TIGR01972 426 FF 427
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
4-204 4.32e-08

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 54.71  E-value: 4.32e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441   4 YVLITLLSSlglGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWISG- 82
Cdd:PRK06473 110 YSLLLLLNA---GVSGAFLAQDLLLFFLFYELELIPLYLLIAIWGGQRRGYAATKFLLYTAISGILILVSFLGLVWLSGa 186
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441  83 ---EWDMVNMSN-PIATAM-----ILAALALKIGLAPMHFWMPE-----------VLQG--LDLST--------GLILST 132
Cdd:PRK06473 187 ssfDYEPLRSHTlPLSTQLlllapILVGFGIKIPLVPFHTWLPDahveastpvsvLLAGvlLKLGTygllrfgvGLFPEA 266
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 823079441 133 WQKLAPLaliiqtaptfhpllLTTLGLMSALVGGWGGLNQTQLRKVLAYSSIAHMGWMIIVLQYAPQLTLLA 204
Cdd:PRK06473 267 WVYLAPW--------------LATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYILLAAAAATPLSILA 324
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
2-302 4.54e-07

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 51.54  E-value: 4.54e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441   2 NPYVLITLLSSLGLgttltFASSHWLLAWMGLEINTLAIIpLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWIS 81
Cdd:PRK08668 101 NMFALMSLAGVLGV-----FLANDLLTLYIFWEIMTFSSF-MMVPMGKKESRKASLKYFVLSAIGAYAMLYAIFLIYAKT 174
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441  82 GEWD-------MVNMSNP----IATAMILAALALKIGLAPMHFWMPE-----------VLQG---------LDLSTGLIL 130
Cdd:PRK08668 175 GTFDfadisqgLINDTSTgfalIVFLFLLAFGVAKAGIFPLHVWAPDayseapqsfsaVLSGqlsklgaygFLLVLYVLP 254
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441 131 STwqKLAPLALIIQTAPTFHpLLLTTLGLMSALVGGWGGLNQTQLRKVLAYSSIAHMGWMIIVLQYAPQLTLLALLTYIL 210
Cdd:PRK08668 255 GT--KLFSEFGTYRGVPLFN-YILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFAGGLFHVF 331
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441 211 MTSAAFLTLKLSYA--------TKISTLATAWSKSPLlTATTALVLLSLGGLPPLT-GFMPKWLILQEMVKQGLPLTATV 281
Cdd:PRK08668 332 NHALFKGLFFLIFAaviyrtgtTKISEMGGLIEKMPF-TFAMYLVAIISLAGIPPMsGFASKWLIFEALISKGMPITAFM 410
                        330       340
                 ....*....|....*....|.
gi 823079441 282 MALTALISLYFYLRLCYTMTL 302
Cdd:PRK08668 411 AFFGSIGSFLYVFRPLAGVFL 431
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
49-192 1.90e-06

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 49.31  E-value: 1.90e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441  49 HPRAVEATTKYFLTQATAAAMILFASTTNAWISGEW-----DMVNMSNPIATAMIL-----AALALKIGLAPMHFWMPE- 117
Cdd:COG1008  156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfdiaELAAAPLPLTAQLLLflaffIAFAVKVPMFPFHTWLPDa 235
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441 118 ----------VLQGLDLSTG----------LILSTWQKLAPLALIiqtaptfhplllttLGLMSALVGGWGGLNQTQLRK 177
Cdd:COG1008  236 hveaptagsvLLAGVLLKMGgygllrfalpLFPEASAYFAPLLAA--------------LGVIGIIYGALVALAQTDLKR 301
                        170
                 ....*....|....*
gi 823079441 178 VLAYSSIAHMGWMII 192
Cdd:COG1008  302 LIAYSSVSHMGFVLL 316
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
92-288 1.99e-06

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 49.54  E-value: 1.99e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441  92 PIATAMILAALALKIGLAPMHFWMPEVLQGLDLSTGLILSTWQKLAPLALIIQTAPTFHPL-----LLTTLGLMSALVGG 166
Cdd:PRK12644 203 SVAVVLILVGALSKSAIVPFHFWLPGAMAAPTPVSAYLHAAAMVKAGIYLVARLAPGFADVpvwrpTVLVLGLATMLLGG 282
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441 167 WGGLNQTQLRKVLAYSSIAHMGWMIIVLQYAPQLTLLALLTYI----LMTSAAFLTLKL---SYATK-ISTLATAWSKSP 238
Cdd:PRK12644 283 WRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRDAALAGLAMLlahaLFKAALFLVVGIidhSTGTRdIRKLSGLGRRQP 362
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 823079441 239 LLTATTALVLLSLGGLPPLTGFMPKWLILQEMVKQGLPLTATVMALTALI 288
Cdd:PRK12644 363 VLAVVAALAAASMAGLPPLLGFVAKEAALEAVLHDGALGPAGPVVLAGIV 412
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
17-213 1.89e-05

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 46.29  E-value: 1.89e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441  17 TTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATA------AAMILFASTTNAWISG--EWDMVN 88
Cdd:PRK08676 115 ITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGtlNWTELA 194
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441  89 MSNP--------IATAMILAALALKIGLAPMHFWMPE-----------VLQGLDLSTGL--ILstwqKLAPLALIIQTAP 147
Cdd:PRK08676 195 AHASllspsvlgASFLFIFIGFLAKSGLVPFHTWLPAayakapsvvsaLLSGTVLNIGIygIL----RLSALLRQSGAAE 270
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 823079441 148 TFHPLLLTtLGLMSALVGGWGGLNQTQLRKVLAYSSIAHMGWMIIVLQYAPQLTLLALLTYILMTS 213
Cdd:PRK08676 271 QFSNVLIG-LGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAHS 335
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
4-203 2.22e-05

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 45.86  E-value: 2.22e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441   4 YVLITLLSSlglGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWISG- 82
Cdd:PRK07363 110 YSLILLING---GIAGALLAQNLLLFFLFYELELIPFYLLIAIWGGEKRGYASIKFLIYTAVSGLLVLAAFLGIVWLSGs 186
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441  83 ---EWDMVNMSN-PIATAMILAALAL-----KIGLAPMHFWMPEVLQGLDLSTGLILS-TWQKLAP-------LALIIQT 145
Cdd:PRK07363 187 tsfDYDAISTQNlSLNTQLILLTGLLlgfgiKIPLVPLHTWLPDAYTEASPAVAILLGgVLAKLGTygllrfgLQLFPQT 266
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 823079441 146 APTFHPLLlTTLGLMSALVGGWGGLNQTQLRKVLAYSSIAHMGWMIIVLQYAPQLTLL 203
Cdd:PRK07363 267 WSLVAPGL-AIIGTISVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAAGTQLSLL 323
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
111-194 2.43e-05

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 46.10  E-value: 2.43e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441 111 MHFWMPEVLQGLDLSTGLILSTWQKLAPLALIIQTAPTFHP-----LLLTTLGLMSALVGGWGGLNQTQLRKVLAYSSIA 185
Cdd:MTH00032 244 LHTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSFPLFEKapltlLIITIFGALTAFFAATVGLVQNDLKKVIAYSTCS 323

                 ....*....
gi 823079441 186 HMGWMIIVL 194
Cdd:MTH00032 324 QLGYMVLII 332
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
19-190 5.23e-05

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 44.92  E-value: 5.23e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441  19 LTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFL------TQATAAAMILFASTTNAWISGE----WDMVN 88
Cdd:PRK06458 123 LALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIicsvgvAFALFGTILVYANAATVMGDGEmailWTELL 202
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441  89 MSNP--------IATAMILAALALKIGLAPMHFWMPE-----------VLQGLDLSTGL-ILSTWQKLAPLALiiqtAPT 148
Cdd:PRK06458 203 KHASlldptlmkLAFVFLLIGFGTKVGLFPMHAWLPDahseapspvsaLLSGVLLNVALyAVLRYYILIDAAI----GSD 278
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 823079441 149 FHPLLLTTLGLMSALVGGWGGLNQTQLRKVLAYSSIAHMGWM 190
Cdd:PRK06458 279 FPGRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLI 320
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
111-193 1.33e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 43.84  E-value: 1.33e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441 111 MHFWMPEVLQGLDLSTGLILSTWQKLAPLALIIQTAPTFH--PLLL---TTLGLMSALVGGWGGLNQTQLRKVLAYSSIA 185
Cdd:MTH00210 230 LHTWLPDAMEGPTPVSALIHAATMVTAGVFLIIRSGPLFEgsPLALtivTILGALTAFFAATVGVVQNDLKKVIAYSTCS 309

                 ....*...
gi 823079441 186 HMGWMIIV 193
Cdd:MTH00210 310 QLGYMVMV 317
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
101-188 1.67e-04

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 43.12  E-value: 1.67e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441 101 ALALKIGLAPMHFWMPE-----------VLQGLDLST---GLILSTWqKLAPLAliiqtAPTFHPLLLtTLGLMSALVGG 166
Cdd:MTH00217 215 SLAIKIPKIPFHIWLPQahveapvagsvILAGVLLKLggyGFIRFSW-PLLPEA-----SEYFSPLIQ-TLSLLAIIYGS 287
                         90       100
                 ....*....|....*....|..
gi 823079441 167 WGGLNQTQLRKVLAYSSIAHMG 188
Cdd:MTH00217 288 LTTCRQVDLKRIIAYSSVAHMG 309
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
6-287 1.95e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 43.02  E-value: 1.95e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441   6 LITLLSSLGLgttlTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATA------AAMILFASTTNAW 79
Cdd:PRK07234 100 LLILHGSVNA----AFVCADLISLYVALEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAmlfyliGAVLVYQANGTFA 175
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441  80 ISGewdmVNMSNPIATAMILAALALKIGLAPMHFWMPEVLQGLDLSTGLILSTWQ------KLAPLALIIQTAPtfhpLL 153
Cdd:PRK07234 176 FSG----LATADPEAFALIALGLLVKGGIFVSGLWLPLTHSEAEPPVSALLSGVVvkagvfPLVRCALDVPGLD----LI 247
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441 154 LTTLGLMSALVGGWGGLNQTQLRKVLAYSSIAHMGWMIIvlqyAPQLTLLALLTYILMTSAAFL---TLKLSYATK-IST 229
Cdd:PRK07234 248 VRIFGVGTALLGVLFALLEKDLKRMLAFSTISQLGFILA----APLVGGLYALAHGLVKSTLFLcagALPSRNFTElISQ 323
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 823079441 230 LATAWSKSPLLTATTALVLLSLGGlppltGFMPKWLILqemvKQGLPLTATVMALTAL 287
Cdd:PRK07234 324 MLGIGKWIPLTMASFSIAGFPLLA-----GFVSKVLTL----KNLLPWQAIALNLAAV 372
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
111-192 2.29e-04

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 43.14  E-value: 2.29e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441 111 MHFWMPEVLQGLDLSTGLILSTWQKLAPLALIIQTAPTFH--PLLL---TTLGLMSALVGGWGGLNQTQLRKVLAYSSIA 185
Cdd:MTH00020 229 LHTWLPDAMEGPTPVSALIHAATMVTAGVFLLIRSSPLFEqaPLALiivTIVGSLTVFFAATVGLVQNDLKKVIAYSTCS 308

                 ....*..
gi 823079441 186 HMGWMII 192
Cdd:MTH00020 309 QLGYMVV 315
PRK06591 PRK06591
putative monovalent cation/H+ antiporter subunit D; Reviewed
33-296 2.94e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235837 [Multi-domain]  Cd Length: 432  Bit Score: 42.46  E-value: 2.94e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441  33 LEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWISGEWDMVNMSN-----------PIATAMILAA 101
Cdd:PRK06591 144 IEISALSSYVLIASGNNPKSLIGAFDYLIMGSIGATLILIAIGFLLSITGSLNMTDIAAylqehtnsriiTIAIGFFLIG 223
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441 102 LALKIGLAPMHFWMpevLQGLDLSTGLILSTwqkLAPLALII---------------QTAPTFHPLLLTTLGLMSALVGG 166
Cdd:PRK06591 224 AILKTAFFPMHFWM---MRAYNNTASVILVY---LAGISTIIgiyiiykftyiiigyETIKTAITNFIRPIALATLIIAP 297
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441 167 WGGLNQTQLRKVLAYSSIAHMGWmiIVLQYAPQLTLLALLTYILMTSAAFLTLKLsyatkISTLATAWSKSPLLTATTaL 246
Cdd:PRK06591 298 YFAYQAKNFKNIIIYSCFTQIGY--VFLLYVTENGIIILPSLLLADSINKIALFL-----IDAYNESYKREPNKVLII-I 369
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|
gi 823079441 247 VLLSLGGLPPLTGFMPKWLILQEMVKQGLPLTATVMALTALISLYFYLRL 296
Cdd:PRK06591 370 AIICSCGLPISPLFFIKVNILELLLTQNLLLDFIIILLSSVGSLFYHYKM 419
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
50-192 4.31e-04

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 42.11  E-value: 4.31e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441  50 PRAVEATTKYFL-TQATAAAM---ILFASTTNAWISG-----EWDMVNMSNPIATAMILA---ALALKIGLAPMHFWMPE 117
Cdd:PRK05846 157 KNRIYAATKFFLyTLLGSLLMlvaIIYLVVVYYNATGtfdiaDLLNLPLPPGVQYWLFLAffiAFAVKMPMFPLHTWLPD 236
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441 118 -----------VLQGLDLSTG----LILStwqklapLALIIQTAPTFHPLLLTtLGLMSALVGGWGGLNQTQLRKVLAYS 182
Cdd:PRK05846 237 ahvqaptagsvLLAGILLKMGayglLRFS-------LPLFPDASHEFAPIIIT-LGVIAIIYGALVALAQTDIKKLIAYS 308
                        170
                 ....*....|
gi 823079441 183 SIAHMGWMII 192
Cdd:PRK05846 309 SISHMGFVTL 318
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
4-192 5.91e-04

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 41.56  E-value: 5.91e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441   4 YVLITLLSSLGLGTtltFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWISGE 83
Cdd:PRK12561  90 YFLMLVLYSAQIGV---FLAQDLLLFFLMWELELVPVYLLISIWGGQKRLYAATKFILYTALASIFILVAGLALALSGDT 166
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441  84 --WDMVNMSN---PIATAMI-----LAALALKIGLAPMHFWMPEVLQGLDLSTGLILS-TWQKLAPLALI---IQTAP-- 147
Cdd:PRK12561 167 ftFDLAELGAksyPLALELLlyagfLIAFGVKLPIFPLHTWLPDAHGEASAPVSMILAgVLLKMGGYALIrfnVQMLPda 246
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*..
gi 823079441 148 --TFHPLLLTtLGLMSALVGGWGGLNQTQLRKVLAYSSIAHMGWMII 192
Cdd:PRK12561 247 hvYFAPALAI-LGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLL 292
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
152-194 7.18e-04

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 41.29  E-value: 7.18e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 823079441 152 LLLTTLGLMSALVGGWGGLNQTQLRKVLAYSSIAHMGWMIIVL 194
Cdd:COG1009  276 TVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLAL 318
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
33-272 8.40e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 41.26  E-value: 8.40e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441  33 LEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWISGEWDMVNMSN-----------PIATAMILAA 101
Cdd:PRK12662 139 LEISSISSYVLVAMGRDKKALVAAFEYLIIGTIGATFYLIGIGFLYAITGTLNMGDMFLiiqdlptnraiQIGVLFIMVG 218
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441 102 LALKIGLAPMHFWMPEVLQGLDLSTGLILSTWQKLAPLALIIQTAPT-FHPLL----------LTTLGLMSALVGGWGGL 170
Cdd:PRK12662 219 LFIKAALFPFHKWLIQAYSEAPSFISVFFSGTSTKVMIYLIIRIVYDvFKANFvfttlpfnnvFMILAALAIVFGSVLAI 298
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441 171 NQTQLRKVLAYSSIAHMGWMIIVLQYAPQLTLLALLTYI----LMTSAAFLTL-KLSY---ATKISTLATAWSKSPLLTA 242
Cdd:PRK12662 299 LSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIvnhsIVKSALFMVSgSISYhfgTTKLEDCLNLWKSMPKITL 378
                        250       260       270
                 ....*....|....*....|....*....|
gi 823079441 243 TTALVLLSLGGLPPLTGFMPKWLILQEMVK 272
Cdd:PRK12662 379 AFVLLSLSLIGMPPTSGFVAKWYILDAFIK 408
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
4-300 9.63e-04

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 40.91  E-value: 9.63e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441   4 YVLITLLssLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWISGE 83
Cdd:PRK08377 110 YAMLFLL--LMLGATGMIATGDIFNLFVFMEITAITAYALTAYNKTGEAAEASMKYIVLGGIGSSFFLIGVALIYGATGT 187
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441  84 WDM------VNMSNP----IATAMILAALALKIGLAPMHFWMPEVLQGLDLSTGLILSTW------QKLAPLALIIQTAP 147
Cdd:PRK08377 188 LNMahiaqlAGTIDPtvaqVGLALLIFGLAVEAELFPLNAWAPDAYQAAPHPITVMFSAFvvkaglYAMARILYLMQNAN 267
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441 148 TFHPLL--LTTLGLMSALVGGWGGLNQTQLRKVLAYSSIAHMGWMIIVLQYAPQLTL---------LALLTYILMTSAAF 216
Cdd:PRK08377 268 GWSSVLklVIIMATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIALALALGTQAGVdagvfhminHAIVKALLFLAVGY 347
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441 217 LTLKLSyATKISTLATAWSKSPLLTATTALVLLSLGGLPPLTGFMPKWLILQEMVKQGLPLTATVMALTALISLYFYLRL 296
Cdd:PRK08377 348 VGITLG-GTEIEKFEGLGKRMPLTALALTIGALSTVGIPLFNVFWSKFRIILAGLSAGYTWPVALVLGASVVEAVYYFRL 426

                 ....
gi 823079441 297 CYTM 300
Cdd:PRK08377 427 IHTM 430
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
51-302 1.75e-03

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 40.01  E-value: 1.75e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441  51 RAVEATTKYFLTQATAAAM------ILFASTTNAWISgewDMVN-MSNPIATAMILAALALKI-------GLAPMHFWMP 116
Cdd:PRK06277 147 EAYKAALKYMILGNVAGSIlllgigFLLASTGTLNIT---DIHNaLLVNPTSPVIYGGLLLLIfgllygsGLPPFHTIKS 223
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441 117 EVLQGLDLSTGLILSTWQKLAPLALIIQTAPTFHPL--------LLTTLGLMSALVGGWGGLNQTQLRKVLAYSSIAHMG 188
Cdd:PRK06277 224 DIYAKAKPFGSALLQTFSKFVLVALMLVIFKLFGGLsyfpsaqgVLIALSVLAMVFGVVMALLQTDYKRLLAYHAISQGG 303
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441 189 WMIIVLQYAPQLTLLALL----TYILMTSAAFLTLKL-SYATKISTLATAWSKSPLLTATTALVLLSLGGLPPL---TGF 260
Cdd:PRK06277 304 YVAAGLALGTPLGIVAGIfhaiNHVIYKSALFLGAGIvSYRTKTSNLRKLGGLLPVMPVVAFMVLCAKLAISGVppfNGF 383
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 823079441 261 MPKWLILQEMVKQGLPLTATVMALTALISLYFYLRLCYTMTL 302
Cdd:PRK06277 384 QSKLMLAQAAMQANMPELAIIMIIVSIGTFVSMMKAFYLIYL 425
PRK12650 PRK12650
DUF4040 family protein;
94-191 3.86e-03

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 39.26  E-value: 3.86e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441  94 ATAMILAALAL-KIGLAPMHFWMPEVLQGLDLSTGLILSTWQKLAPLALIIQTAPTFHP-----LLLTTLGLMSALVGGW 167
Cdd:PRK12650 209 VVAVLIAVAAFtKSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFHDvavwnWLLIIVGMITALMGAV 288
                         90       100
                 ....*....|....*....|....
gi 823079441 168 GGLNQTQLRKVLAYSSIAHMGWMI 191
Cdd:PRK12650 289 FAVQKTDLKKLTAYSTVSQLGWIV 312
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
98-194 4.54e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 38.75  E-value: 4.54e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441  98 ILAALALKIGLAPMHFWMPEV-----LQGLDLSTGLILstwqKLAPLALIIQTAPTFhPL-------LLTTLGLMSALVG 165
Cdd:MTH00226 236 IFLAMAVKIPIFPFHIWLPKAhveapVAGSVLLAGILL----KLGGYGLVRLSWPIL-PLgaqnlapAVIAMGIVGIVYG 310
                         90       100
                 ....*....|....*....|....*....
gi 823079441 166 GWGGLNQTQLRKVLAYSSIAHMGWMIIVL 194
Cdd:MTH00226 311 SFATCRQIDVKRLVAYSSVAHMGLVSITL 339
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
152-338 9.95e-03

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 37.62  E-value: 9.95e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441 152 LLLTTLGLMSALVGGWGGLNQTQLRKVLAYSSIAHMGWMIIVLQYAPQL----TLLALLTYILMTSAAFLTL----KLSY 223
Cdd:PRK12663 273 PLLATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLGLALGTPAgingAIFYLVHDMVVKTALFLIAgslvRLTG 352
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823079441 224 ATKISTLATAWSKSPLLTATTALVLLSLGGLPPLTGFMPKWLILQEMVKQGLPLTATVMALTALISLYFYLRLCYTMTLT 303
Cdd:PRK12663 353 YRSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQGALDNGAYILLALMLITSLITMYSLFRIFFLAYWG 432
                        170       180       190
                 ....*....|....*....|....*....|....*
gi 823079441 304 ISPNTVTSVTPWRTQTNQASTPLALsTVLALGLLP 338
Cdd:PRK12663 433 DKDGEEVNFKPIPLYRKLPLSILAV-VVIAMGIAA 466
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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