NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|823078595|gb|AKI26709|]
View 

NADH dehydrogenase subunit 5, partial (mitochondrion) [Locusta migratoria]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ND5 super family cl33362
NADH dehydrogenase subunit 5; Provisional
 1-177 1.28e-59

NADH dehydrogenase subunit 5; Provisional


The actual alignment was detected with superfamily member MTH00165:

Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 194.59  E-value: 1.28e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078595   1 AGSMIHNLRDSQDIRFMGSIIHFMPLTSICFNVSSLCLCGMPFLAGFYSKDLILEIVCLSWVNFFIFFLYFFSTGLTASY 80
Cdd:MTH00165 312 AGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSY 391

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078595  81 SFRLFYYSMSGDNNYYSSYSFNDSSYFISFGMIGLLIVAVFGGSLLSWLIFPVPYLVVLPWYLKFLTLLTIILGSYFGYV 160
Cdd:MTH00165 392 SFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYE 471

                        170
                 ....*....|....*..
gi 823078595 161 ISDFVYSYELFSLNFLS 177
Cdd:MTH00165 472 LSLMSLSYNLKSLKNYK 488
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-177 1.28e-59

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 194.59  E-value: 1.28e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078595   1 AGSMIHNLRDSQDIRFMGSIIHFMPLTSICFNVSSLCLCGMPFLAGFYSKDLILEIVCLSWVNFFIFFLYFFSTGLTASY 80
Cdd:MTH00165 312 AGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSY 391

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078595  81 SFRLFYYSMSGDNNYYSSYSFNDSSYFISFGMIGLLIVAVFGGSLLSWLIFPVPYLVVLPWYLKFLTLLTIILGSYFGYV 160
Cdd:MTH00165 392 SFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYE 471

                        170
                 ....*....|....*..
gi 823078595 161 ISDFVYSYELFSLNFLS 177
Cdd:MTH00165 472 LSLMSLSYNLKSLKNYK 488
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
 80-175 2.96e-21

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 85.29  E-value: 2.96e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078595   80 YSFRLFYYSMSGDNNYYSSYSFNDSSYFISFGMIGLLIVAVFGGSLLSWLIFPVPYLVVLPWYLKFLTLLTIILGSYFGY 159
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIFPKPPMMTMPLYLKLLALLVTILGLLLGL 80

                          90
                  ....*....|....*.
gi 823078595  160 VISDFVYSYELFSLNF 175
Cdd:pfam06455  81 ELSNLSNKQLKKSLNF 96
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 1-161 3.53e-16

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 75.19  E-value: 3.53e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078595   1 AGSMIHNLrDSQDIRFMGSIIHFMPLTSICFNVSSLCLCGMPFLAGFYSKDLILE-IVCLSWVNFFIFFLYFFSTGLTAS 79
Cdd:COG1009  344 AGSVIHAT-GTRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaALEAGGLGPLLLAVALLGAFLTAF 422

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078595  80 YSFRLFYYSMSGDNNYYSSYSFNDSSYFISFGMIGLLIVAVFGGSLLSWL---------IFPVPYLVVLPWYLKFLTLLT 150
Cdd:COG1009  423 YSFRLFFLVFFGKPRPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLlegllapaaVLGGELHLAHGLLLNALPLLL 502

                        170
                 ....*....|.
gi 823078595 151 IILGSYFGYVI 161
Cdd:COG1009  503 SLLGIALGYLL 513
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-177 1.28e-59

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 194.59  E-value: 1.28e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078595   1 AGSMIHNLRDSQDIRFMGSIIHFMPLTSICFNVSSLCLCGMPFLAGFYSKDLILEIVCLSWVNFFIFFLYFFSTGLTASY 80
Cdd:MTH00165 312 AGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSY 391

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078595  81 SFRLFYYSMSGDNNYYSSYSFNDSSYFISFGMIGLLIVAVFGGSLLSWLIFPVPYLVVLPWYLKFLTLLTIILGSYFGYV 160
Cdd:MTH00165 392 SFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYE 471

                        170
                 ....*....|....*..
gi 823078595 161 ISDFVYSYELFSLNFLS 177
Cdd:MTH00165 472 LSLMSLSYNLKSLKNYK 488
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
 1-162 1.11e-36

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 132.85  E-value: 1.11e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078595   1 AGSMIHNLRDSQDIRFMGSIIHFMPLTSICFNVSSLCLCGMPFLAGFYSKDLILEIVCLSWVNFFIFFLYFFSTGLTASY 80
Cdd:MTH00209 308 AGNIIHSHGHSQDIRMVGNLWYQMPITSICLNIANLSLCGIPFLAGFYSKDLILESMLESNMPIMTLILMFLSTSLTAAY 387

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078595  81 SFRLFYYSMSGDNNYYSSYSFNDSSYFISFGMIGLLIVAVFGGSLLSWLIFPVPYLVVLPWYLKFLTLLTIILGSYFGYV 160
Cdd:MTH00209 388 SMRLSYFSLWGPNSSKSLNSSFDQNKLNLKPMLVLTLGSITGGSVMSWVMVPSVNSVVLPWFLKLLPIMLILFGVLLMYM 467


                 ..
gi 823078595 161 IS 162
Cdd:MTH00209 468 VL 469
ND5 MTH00151
NADH dehydrogenase subunit 5; Provisional
 1-173 1.68e-33

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214436 [Multi-domain]  Cd Length: 565  Bit Score: 124.18  E-value: 1.68e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078595   1 AGSMIHNLRDSQDIRFMGSIIHFMPLTSICFNVSSLCLCGMPFLAGFYSKDLILEIVCLSWVNFFIFFLYFFSTGLTASY 80
Cdd:MTH00151 309 AGSIIHSSSGTQDIRLLGSLFLSLPLTSGCLNISSLSLCGAPFLSGFYSKDLILESSLMSPTSLLMVLLMFVGVGLTALY 388

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078595  81 SFRLFYYSMSGDNNYYSSYSFNDSSYFISFGMIGLLIVAVFGGSLLSWLIFPVPYLVVLPWYLKFLTLLTIILGSYFGYV 160
Cdd:MTH00151 389 SARLSFCLVWGSMKSSSLSSKSDEDFYVSLPMLLLSLGALIGGKLLQSLFEGFSEEFFLPSYLKLLIGFVILLGLFLSFG 468

                        170
                 ....*....|...
gi 823078595 161 ISDFVYSYELFSL 173
Cdd:MTH00151 469 FWDSGFSSSKMVK 481
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 1-174 7.33e-30

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 114.09  E-value: 7.33e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078595   1 AGSMIHNLRDSQDIRFMGSIIHFMPLTSICFNVSSLCLCGMPFLAGFYSKDLILEIVCLSWVNFFIFFLYFFSTGLTASY 80
Cdd:MTH00207 312 AGSLIHSHHHSQDLRTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILESSLFYPHNSLMILMIFLATALTAAY 391

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078595  81 SFRLFYYSMSGDNNYYSSYSFNDSSYFISFGMIGLLIVAVFGGSLLSWLIFPVPYLVVLPWYLKFLTLLTIILGSYFGYV 160
Cdd:MTH00207 392 STRFTLAVLWSPNSSSPYHHLEDEDKSLTTPMLLLTLGAITSGSALNWWLPTPQEEPILPLQYKLLPLLVVTLGALLAWL 471

                        170
                 ....*....|....
gi 823078595 161 ISDFVYSYELFSLN 174
Cdd:MTH00207 472 FTTPNITKTPLLIN 485
ND5 MTH00004
NADH dehydrogenase subunit 5; Validated
 1-158 1.59e-28

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 214398 [Multi-domain]  Cd Length: 602  Bit Score: 110.64  E-value: 1.59e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078595   1 AGSMIHNLRDSQDIRFMGSIIHFMPLTSICFNVSSLCLCGMPFLAGFYSKDLILEIVCLSWVNFFIFFLYFFSTGLTASY 80
Cdd:MTH00004 342 SGSIIHNLNNEQDIRKMGGLQKTLPITSSCLTIGNLALMGTPFLSGFYSKDTIIETLNTSYLNAWALLLTLLATSFTAAY 421

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 823078595  81 SFRLFYYSMSGDNNYYSSYSFNDSSYFISFGMIGLLIVAVFGGSLLSWLIFPV-PYLVVLPWYLKFLTLLTIILGSYFG 158
Cdd:MTH00004 422 SLRMILLVQTGFPRTPPTTPINENTPTIINPITRLALGSILAGLLISSTILPTkTPPMTMPTTTKLAALIVTILGILLA 500
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 2-177 3.23e-28

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 109.66  E-value: 3.23e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078595   2 GSMIHNLRDSQDIRFMGSIIHFMPLTSICFNVSSLCLCGMPFLAGFYSKDLILEIVCLSWVNFFIFFLYFFSTGLTASYS 81
Cdd:MTH00211 338 GSIIHGLNNEQDIRKMGGLSKNLPFTSSCLFLGSLALMGFPFLSGFFSKDLILESMNGSYLNAWALLLTLLATSLTAAYS 417

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078595  82 FRLFYYSMSGDNNYYSSYSFNDSSYFISFGMIGLLIVAVFGGSLLSWLIFPVPYLVV-LPWYLKFLTLLTIILGSYFG-Y 159
Cdd:MTH00211 418 FRLIFLSLGGYPRFLSLSPINENYKLLKNPLKRLALGSILAGFIITSNLPPEKPEILsLPFLLKLMPLLVTIVGLLLGlE 497

                        170
                 ....*....|....*...
gi 823078595 160 VISDFVYSYELFSLNFLS 177
Cdd:MTH00211 498 LVNLTHKQLKTSTLSFSN 515
ND5 MTH00108
NADH dehydrogenase subunit 5; Provisional
 1-154 1.04e-27

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177170 [Multi-domain]  Cd Length: 602  Bit Score: 108.02  E-value: 1.04e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078595   1 AGSMIHNLRDSQDIRFMGSIIHFMPLTSICFNVSSLCLCGMPFLAGFYSKDLILEIVCLSWVNFFIFFLYFFSTGLTASY 80
Cdd:MTH00108 343 SGSIIHNLNDEQDIRKMGGLFKTLPFTSTALIIGSLALTGMPFLTGFYSKDLIIEAANTSYTNAWALLITLIATSLTAAY 422

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 823078595  81 SFRLFYYSMSGDNNYYSSYSFNDSSYFISFGMIGLLIVAVFGGSLLSWLIFP--VPYLvVLPWYLKFLTLLTIILG 154
Cdd:MTH00108 423 STRIIFFALLGQPRFPPLITINENNPLLINPIKRLLLGSIFAGFLISNNIPPttIPQM-TMPLYLKLTALAVTILG 497
ND5 MTH00208
NADH dehydrogenase subunit 5; Provisional
 2-177 2.47e-26

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177251 [Multi-domain]  Cd Length: 628  Bit Score: 104.28  E-value: 2.47e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078595   2 GSMIHNLRDSQDIRFMGSIIHFMPLTSICFNVSSLCLCGMPFLAGFYSKDLILEIVCLSWVNFFIFFLYFFSTGLTASYS 81
Cdd:MTH00208 370 GSIIHSLNNEQDLRKMGGLSFLLPVTSSCIILGSLALMGTPFLAGFYSKDLILEAGLASISNLLSIILALIATLLTAVYS 449

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078595  82 FRLFYYSMSGDNNYYSSYSFNDSSYFISFGMIGLLIVAVFGGSLLSWLIFPVPYLVVlPWYLKFLTLLTIILGSYFGYVI 161
Cdd:MTH00208 450 FRIIFFCFLNNPSFSPLSPISEENPNLTNPLLRLAIGTIISGWFFSNFVFNLPPLTL-PLILKSLPLIVTIIGAAFSFSF 528

                        170
                 ....*....|....*.
gi 823078595 162 SDFvYSYELFSLNFLS 177
Cdd:MTH00208 529 LLS-LSSNPINSNFFS 543
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
 1-154 2.84e-25

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 101.14  E-value: 2.84e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078595   1 AGSMIHNLRDSQDIRFMGSIIHFMPLTSICFNVSSLCLCGMPFLAGFYSKDLILEIVCLSWVNFFIFFLYFFSTGLTASY 80
Cdd:MTH00066 340 SGSIIHSLNDEQDIRKMGGLQKALPITTSCLTIGSLALTGTPFLAGFFSKDAIIEAMNTSNLNSWALILTLIATSFTAVY 419

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 823078595  81 SFRLFYYSMSGDNNYYSSYSFNDSSYFISFGMIGLLIVAVFGGSLLSWLIFPV-PYLVVLPWYLKFLTLLTIILG 154
Cdd:MTH00066 420 SFRIIYFSSMKFPRSLPLSPINENNPLIINPIKRLAWGSIIAGLLIIFNILPMkPQILTMPTFMKLAALLVTLLG 494
ND5 MTH00137
NADH dehydrogenase subunit 5; Provisional
 1-89 6.64e-23

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214428 [Multi-domain]  Cd Length: 611  Bit Score: 94.51  E-value: 6.64e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078595   1 AGSMIHNLRDSQDIRFMGSIIHFMPLTSICFNVSSLCLCGMPFLAGFYSKDLILEIVCLSWVNFFIFFLYFFSTGLTASY 80
Cdd:MTH00137 348 SGSIIHSLNDEQDIRKMGGLHHLTPFTSSCLTIGSLALTGTPFLAGFFSKDAIIEALNTSHLNAWALTLTLIATSFTAVY 427

                         90
                 ....*....|
gi 823078595  81 SFRL-FYYSM 89
Cdd:MTH00137 428 SLRVvFFVSM 437
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
 80-175 2.96e-21

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 85.29  E-value: 2.96e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078595   80 YSFRLFYYSMSGDNNYYSSYSFNDSSYFISFGMIGLLIVAVFGGSLLSWLIFPVPYLVVLPWYLKFLTLLTIILGSYFGY 159
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIFPKPPMMTMPLYLKLLALLVTILGLLLGL 80

                          90
                  ....*....|....*.
gi 823078595  160 VISDFVYSYELFSLNF 175
Cdd:pfam06455  81 ELSNLSNKQLKKSLNF 96
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
 1-168 5.39e-18

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 80.44  E-value: 5.39e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078595   1 AGSMIHNLRDSQDIRFMGSIIHFMPLTSICFNVSSLCLCGMPFLAGFYSKDLILEIVCLSWVNFFIFFLYFFSTGLTASY 80
Cdd:MTH00210 344 AGSVIHAVSDEQDMRKMGGLIKSIPFTYVMILIGSLSLMGFPYLTGFYSKDLILELTYDKYYIAFAYWLGSFSALLTAFY 423

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078595  81 SFRLFYYSMSGDNNYYSSYSFN--DSSYFISFGMIGLLIVAVFGGSLLSWLIFPVPYLVVLPWYLKFLTLLTIILGSYFG 158
Cdd:MTH00210 424 SIRLIYLTFITNTNSKKEVFIGvhESSWNITFPLLLLAFGSIFVGYLGKEVVLSNVIPPIVPNSIKMIPLLFSLLGALLA 503

                        170
                 ....*....|
gi 823078595 159 YVISDFVYSY 168
Cdd:MTH00210 504 FVIYNSMVFL 513
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 1-176 6.77e-18

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 80.12  E-value: 6.77e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078595   1 AGSMIHNLRDSQDIRFMGSIIHFMPLTSICFNVSSLCLCGMPFLAGFYSKDLILEIVCLSWVNFFIFFLYFFSTGLTASY 80
Cdd:MTH00020 343 AGSVIHALSDEQDMRKMGGLISFLPLTYIFFLIGSLSLMGFPYLTGFYSKDLILELAFGQYYLIFAYWLGCFSALLTAFY 422

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078595  81 SFRLFYYSMSGDNNYYSSYSFN--DSSYFISFGMIGLLIVAVFGGSLLSWLI-------FPVPYLVV--LPWYLKFL-TL 148
Cdd:MTH00020 423 SIRLIYLTFLSNTNLKKAVFFHlhEGDWNLLLPLGILALGSIFVGYLAKEMIwsfqitlPPIVPLSIklLPVFLSLGgIG 502

                        170       180
                 ....*....|....*....|....*...
gi 823078595 149 LTIILGSYFGYVISDFVYSYELFSLNFL 176
Cdd:MTH00020 503 LVIILYFYSSKTFRVPFSFIGRNSYTFL 530
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
 1-85 4.18e-17

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 77.89  E-value: 4.18e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078595   1 AGSMIHNLRDSQDIRFMGSIIHFMPLTSICFNVSSLCLCGMPFLAGFYSKDLILEiVCLSWVNFFIFFLYFFSTGLTASY 80
Cdd:PRK06590 350 AGSVIHAMHHEQDIRKMGGLRKKMPVTYATFLIGTLALIGIPPFAGFFSKDEILE-AAFANGHINLFVAGLVGAFLTAFY 428


                 ....*
gi 823078595  81 SFRLF 85
Cdd:PRK06590 429 SFRLI 433
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 1-161 3.53e-16

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 75.19  E-value: 3.53e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078595   1 AGSMIHNLrDSQDIRFMGSIIHFMPLTSICFNVSSLCLCGMPFLAGFYSKDLILE-IVCLSWVNFFIFFLYFFSTGLTAS 79
Cdd:COG1009  344 AGSVIHAT-GTRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaALEAGGLGPLLLAVALLGAFLTAF 422

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078595  80 YSFRLFYYSMSGDNNYYSSYSFNDSSYFISFGMIGLLIVAVFGGSLLSWL---------IFPVPYLVVLPWYLKFLTLLT 150
Cdd:COG1009  423 YSFRLFFLVFFGKPRPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLlegllapaaVLGGELHLAHGLLLNALPLLL 502

                        170
                 ....*....|.
gi 823078595 151 IILGSYFGYVI 161
Cdd:COG1009  503 SLLGIALGYLL 513
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
2-92 6.16e-13

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 65.82  E-value: 6.16e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078595   2 GSMIHNLRD--------SQDIRFMGSIIHFMPLTSICFNVSSLCLCGMPFLAGFYSKDLILEIVCLSwvNFFIFFLYFFS 73
Cdd:PRK07376 361 GSVIHGMEEvvghdpvlAQDMRLMGGLRKYMPITAITFLIGCLAISGIPPFAGFWSKDEILGAAFEA--NPALWFVGFLT 438

                         90
                 ....*....|....*....
gi 823078595  74 TGLTASYSFRLFYYSMSGD 92
Cdd:PRK07376 439 AGMTAFYMFRMYFLTFEGE 457
ndhF CHL00025
NADH dehydrogenase subunit 5
 1-114 5.88e-10

NADH dehydrogenase subunit 5


Pssm-ID: 214338 [Multi-domain]  Cd Length: 741  Bit Score: 57.21  E-value: 5.88e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078595   1 AGSMIHNL--------RDSQDIRFMGSIIHFMPLTSICFNVSSLCLCGMPFLAGFYSKDlilEIVCLSWVNFFIFFLYFF 72
Cdd:CHL00025 360 SGSVIHSMepivgyspDKSQNMVLMGGLRKYMPITKTTFLLGTLSLCGIPPLACFWSKD---EILNDSWLYSPIFAIIAW 436

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 823078595  73 ST-GLTASYSFRLFYYSMSGD-NNYYSSYSFNDSSYFISFGMIG 114
Cdd:CHL00025 437 STaGLTAFYMFRIYLLTFEGHlRVHFQNYSGKKNSSFYSISLWG 480
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 1-56 8.93e-09

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 53.81  E-value: 8.93e-09
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 823078595   1 AGSMIHNLR-DSQDIRFMGSIIHFMPLTSICFNVSSLCLCGMPFLAGFYSKDLILEI 56
Cdd:MTH00032 359 AGSVIHSTTvDEQDMRKMGGLIHSIPFTYTMMLIGSFSIMGLPYLTGFYSKDLILEL 415
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-55 5.43e-07

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 48.08  E-value: 5.43e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 823078595    1 AGSMIHNLRDSQDIRFMGSIIHFMPLTSICFNVSSLCLCGMPFLAGFYSKDLILE 55
Cdd:pfam00361 219 AGSVIYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 1-55 9.85e-06

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 44.75  E-value: 9.85e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 823078595   1 AGSMIHnLRDSQDIRFMGSIIHFMPLTSICFNVSSLCLCGMPFLAGFYSKDLILE 55
Cdd:COG0651  344 AGAIER-ATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQ 397
ND5 MTH00095
NADH dehydrogenase subunit 5; Provisional
 2-153 2.95e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177158 [Multi-domain]  Cd Length: 527  Bit Score: 37.20  E-value: 2.95e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078595   2 GSMIHNLRDSQDIRFMGSIIHFMPLTSICFNVSSLCLCGMPFLAGFYSKDLILEIVCLSWVNFFIFFLYFFSTGLTASYS 81
Cdd:MTH00095 297 GYLIHSNFGQQDGRNYSNNGNLPMFIQLQLLVTLFCLCGLMFTSGMVSKELILELFFFNNYMIFFSLMFFFSVFLTFGYS 376

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 823078595  82 FRLFyysMSGDNNYYSSYSFNDSSYFISFGMIGLLIVAVFggsLLSWLIFPVPYLVVLPWYLKFLTLLTIIL 153
Cdd:MTH00095 377 YRLW---KSFFLSFSKVVNVYSSSVLMNFLSLMLVFFSVF---FLWWLNFNLLNLPSLFLYLDFYVPLFYLF 442
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-55 6.83e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 36.23  E-value: 6.83e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 823078595   1 AGSMIHNLrDSQDIRFMGSIIHFMPLTSICFNVSSLCLCGMPFLAGFYSKDLILE 55
Cdd:PRK08376 371 AGAVIYET-GTRNLNELGGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLIYE 424
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH