NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|823078593|gb|AKI26708|]
View 

NADH dehydrogenase subunit 5, partial (mitochondrion) [Aiolopus thalassinus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ND5 super family cl33362
NADH dehydrogenase subunit 5; Provisional
 1-177 1.51e-48

NADH dehydrogenase subunit 5; Provisional


The actual alignment was detected with superfamily member MTH00165:

Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 165.32  E-value: 1.51e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078593   1 AGCTILNLKDSPDIRYMGSVVNFMPLTSICFNVSSLSLCGFPFLAGFYSKDLILEIVCLSWVNFLIFFFYFFSTGLTASY 80
Cdd:MTH00165 312 AGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSY 391

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078593  81 SFPLFYYSMSGDNNFYPNFYFNDNSYFISFMMICMLLMAVFSGSFLSLLIFPTPYIITLPWYLKFMTLFVVILGSYFGGF 160
Cdd:MTH00165 392 SFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYE 471

                        170
                 ....*....|....*..
gi 823078593 161 ITNIEFSYYLFSLSFLS 177
Cdd:MTH00165 472 LSLMSLSYNLKSLKNYK 488
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-177 1.51e-48

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 165.32  E-value: 1.51e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078593   1 AGCTILNLKDSPDIRYMGSVVNFMPLTSICFNVSSLSLCGFPFLAGFYSKDLILEIVCLSWVNFLIFFFYFFSTGLTASY 80
Cdd:MTH00165 312 AGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSY 391

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078593  81 SFPLFYYSMSGDNNFYPNFYFNDNSYFISFMMICMLLMAVFSGSFLSLLIFPTPYIITLPWYLKFMTLFVVILGSYFGGF 160
Cdd:MTH00165 392 SFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYE 471

                        170
                 ....*....|....*..
gi 823078593 161 ITNIEFSYYLFSLSFLS 177
Cdd:MTH00165 472 LSLMSLSYNLKSLKNYK 488
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
 80-175 6.73e-16

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 71.43  E-value: 6.73e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078593   80 YSFPLFYYSMSGDNNFYPNFYFNDNSYFISFMMICMLLMAVFSGSFLSLLIFPTPYIITLPWYLKFMTLFVVILGSYFGG 159
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIFPKPPMMTMPLYLKLLALLVTILGLLLGL 80

                          90
                  ....*....|....*.
gi 823078593  160 FITNIEFSYYLFSLSF 175
Cdd:pfam06455  81 ELSNLSNKQLKKSLNF 96
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 13-161 1.08e-10

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 59.40  E-value: 1.08e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078593  13 DIRYMGSVVNFMPLTSICFNVSSLSLCGFPFLAGFYSKDLILE-IVCLSWVNFLIFFFYFFSTGLTASYSFPLFYYSMSG 91
Cdd:COG1009  355 DIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaALEAGGLGPLLLAVALLGAFLTAFYSFRLFFLVFFG 434

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 823078593  92 DNNFYPNFYFNDNSYFISFMMICMLLMAVFSGSFLSLL---------IFPTPYIITLPWYLKFMTLFVVILGSYFGGFI 161
Cdd:COG1009  435 KPRPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLlegllapaaVLGGELHLAHGLLLNALPLLLSLLGIALGYLL 513
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-177 1.51e-48

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 165.32  E-value: 1.51e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078593   1 AGCTILNLKDSPDIRYMGSVVNFMPLTSICFNVSSLSLCGFPFLAGFYSKDLILEIVCLSWVNFLIFFFYFFSTGLTASY 80
Cdd:MTH00165 312 AGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSY 391

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078593  81 SFPLFYYSMSGDNNFYPNFYFNDNSYFISFMMICMLLMAVFSGSFLSLLIFPTPYIITLPWYLKFMTLFVVILGSYFGGF 160
Cdd:MTH00165 392 SFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYE 471

                        170
                 ....*....|....*..
gi 823078593 161 ITNIEFSYYLFSLSFLS 177
Cdd:MTH00165 472 LSLMSLSYNLKSLKNYK 488
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
 1-169 3.17e-29

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 112.43  E-value: 3.17e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078593   1 AGCTILNLKDSPDIRYMGSVVNFMPLTSICFNVSSLSLCGFPFLAGFYSKDLILEIVCLSWVNFLIFFFYFFSTGLTASY 80
Cdd:MTH00209 308 AGNIIHSHGHSQDIRMVGNLWYQMPITSICLNIANLSLCGIPFLAGFYSKDLILESMLESNMPIMTLILMFLSTSLTAAY 387

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078593  81 SFPLFYYSMSGDNNFYPNFYFNDNSYFISFMMICMLLMAVFSGSFLSLLIFPTPYIITLPWYLKFMTLFVVILGSYFGGF 160
Cdd:MTH00209 388 SMRLSYFSLWGPNSSKSLNSSFDQNKLNLKPMLVLTLGSITGGSVMSWVMVPSVNSVVLPWFLKLLPIMLILFGVLLMYM 467


                 ....*....
gi 823078593 161 ITNIEFSYY 169
Cdd:MTH00209 468 VLKKNFFLI 476
ND5 MTH00151
NADH dehydrogenase subunit 5; Provisional
 1-177 1.01e-27

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214436 [Multi-domain]  Cd Length: 565  Bit Score: 108.01  E-value: 1.01e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078593   1 AGCTILNLKDSPDIRYMGSVVNFMPLTSICFNVSSLSLCGFPFLAGFYSKDLILEIVCLSWVNFLIFFFYFFSTGLTASY 80
Cdd:MTH00151 309 AGSIIHSSSGTQDIRLLGSLFLSLPLTSGCLNISSLSLCGAPFLSGFYSKDLILESSLMSPTSLLMVLLMFVGVGLTALY 388

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078593  81 SFPLFYYSMSGDNNFYPNFYFNDNSYFISFMMICMLLMAVFSGSFLSLLIFPTPYIITLPWYLKFMTLFVVILG--SYFG 158
Cdd:MTH00151 389 SARLSFCLVWGSMKSSSLSSKSDEDFYVSLPMLLLSLGALIGGKLLQSLFEGFSEEFFLPSYLKLLIGFVILLGlfLSFG 468

                        170
                 ....*....|....*....
gi 823078593 159 GFITNIEFSYYLFSLSFLS 177
Cdd:MTH00151 469 FWDSGFSSSKMVKLSFFFS 487
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 2-177 8.75e-26

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 102.72  E-value: 8.75e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078593   2 GCTILNLKDSPDIRYMGSVVNFMPLTSICFNVSSLSLCGFPFLAGFYSKDLILEIVCLSWVNFLIFFFYFFSTGLTASYS 81
Cdd:MTH00211 338 GSIIHGLNNEQDIRKMGGLSKNLPFTSSCLFLGSLALMGFPFLSGFFSKDLILESMNGSYLNAWALLLTLLATSLTAAYS 417

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078593  82 FPLFYYSMSGDNNFYPNFYFNDNSYFISFMMICMLLMAVFSGSFLSLLIFPTPYII-TLPWYLKFMTLFVVILGSYFGGF 160
Cdd:MTH00211 418 FRLIFLSLGGYPRFLSLSPINENYKLLKNPLKRLALGSILAGFIITSNLPPEKPEIlSLPFLLKLMPLLVTIVGLLLGLE 497

                        170
                 ....*....|....*..
gi 823078593 161 ITNIEFSYYLFSLSFLS 177
Cdd:MTH00211 498 LVNLTHKQLKTSTLSFS 514
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 1-174 1.49e-25

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 102.15  E-value: 1.49e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078593   1 AGCTILNLKDSPDIRYMGSVVNFMPLTSICFNVSSLSLCGFPFLAGFYSKDLILEIVCLSWVNFLIFFFYFFSTGLTASY 80
Cdd:MTH00207 312 AGSLIHSHHHSQDLRTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILESSLFYPHNSLMILMIFLATALTAAY 391

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078593  81 SFPLFYYSMSGDNNFYPNFYFNDNSYFISFMMICMLLMAVFSGSFLSLLIFPTPYIITLPWYLKFMTLFVVILGSYFGGF 160
Cdd:MTH00207 392 STRFTLAVLWSPNSSSPYHHLEDEDKSLTTPMLLLTLGAITSGSALNWWLPTPQEEPILPLQYKLLPLLVVTLGALLAWL 471

                        170
                 ....*....|....
gi 823078593 161 ITNIEFSYYLFSLS 174
Cdd:MTH00207 472 FTTPNITKTPLLIN 485
ND5 MTH00108
NADH dehydrogenase subunit 5; Provisional
 1-175 7.37e-24

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177170 [Multi-domain]  Cd Length: 602  Bit Score: 97.23  E-value: 7.37e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078593   1 AGCTILNLKDSPDIRYMGSVVNFMPLTSICFNVSSLSLCGFPFLAGFYSKDLILEIVCLSWVNFLIFFFYFFSTGLTASY 80
Cdd:MTH00108 343 SGSIIHNLNDEQDIRKMGGLFKTLPFTSTALIIGSLALTGMPFLTGFYSKDLIIEAANTSYTNAWALLITLIATSLTAAY 422

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078593  81 SFPLFYYSMSGDNNFYPNFYFNDNSYFISFMMICMLLMAVFSGSFLSLLIFPTPYI-ITLPWYLKFMTLFVVILgsyfgG 159
Cdd:MTH00108 423 STRIIFFALLGQPRFPPLITINENNPLLINPIKRLLLGSIFAGFLISNNIPPTTIPqMTMPLYLKLTALAVTIL-----G 497

                        170
                 ....*....|....*.
gi 823078593 160 FITNIEFSYYLFSLSF 175
Cdd:MTH00108 498 FILALELNLLTNNLKF 513
ND5 MTH00208
NADH dehydrogenase subunit 5; Provisional
 2-177 1.58e-23

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177251 [Multi-domain]  Cd Length: 628  Bit Score: 96.19  E-value: 1.58e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078593   2 GCTILNLKDSPDIRYMGSVVNFMPLTSICFNVSSLSLCGFPFLAGFYSKDLILEIVCLSWVNFLIFFFYFFSTGLTASYS 81
Cdd:MTH00208 370 GSIIHSLNNEQDLRKMGGLSFLLPVTSSCIILGSLALMGTPFLAGFYSKDLILEAGLASISNLLSIILALIATLLTAVYS 449

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078593  82 FPLFYYSMSGDNNFYPNFYFNDNSYFISFMMICMLLMAVFSGSFLSLLIFPTPyIITLPWYLKFMTLFVVILGSYFgGFI 161
Cdd:MTH00208 450 FRIIFFCFLNNPSFSPLSPISEENPNLTNPLLRLAIGTIISGWFFSNFVFNLP-PLTLPLILKSLPLIVTIIGAAF-SFS 527

                        170
                 ....*....|....*.
gi 823078593 162 TNIEFSYYLFSLSFLS 177
Cdd:MTH00208 528 FLLSLSSNPINSNFFS 543
ND5 MTH00004
NADH dehydrogenase subunit 5; Validated
 1-158 2.34e-23

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 214398 [Multi-domain]  Cd Length: 602  Bit Score: 95.62  E-value: 2.34e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078593   1 AGCTILNLKDSPDIRYMGSVVNFMPLTSICFNVSSLSLCGFPFLAGFYSKDLILEIVCLSWVNFLIFFFYFFSTGLTASY 80
Cdd:MTH00004 342 SGSIIHNLNNEQDIRKMGGLQKTLPITSSCLTIGNLALMGTPFLSGFYSKDTIIETLNTSYLNAWALLLTLLATSFTAAY 421

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 823078593  81 SFPLFYYSMSGDNNFYPNFYFNDNSYFISFMMICMLLMAVFSGSFLSLLIFPT-PYIITLPWYLKFMTLFVVILGSYFG 158
Cdd:MTH00004 422 SLRMILLVQTGFPRTPPTTPINENTPTIINPITRLALGSILAGLLISSTILPTkTPPMTMPTTTKLAALIVTILGILLA 500
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
 1-154 9.76e-20

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 85.34  E-value: 9.76e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078593   1 AGCTILNLKDSPDIRYMGSVVNFMPLTSICFNVSSLSLCGFPFLAGFYSKDLILEIVCLSWVNFLIFFFYFFSTGLTASY 80
Cdd:MTH00066 340 SGSIIHSLNDEQDIRKMGGLQKALPITTSCLTIGSLALTGTPFLAGFFSKDAIIEAMNTSNLNSWALILTLIATSFTAVY 419

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 823078593  81 SFPLFYYSMSGDNNFYPNFYFNDNSYFISFMMICMLLMAVFSGSFLSLLIFPT-PYIITLPWYLKFMTLFVVILG 154
Cdd:MTH00066 420 SFRIIYFSSMKFPRSLPLSPINENNPLIINPIKRLAWGSIIAGLLIIFNILPMkPQILTMPTFMKLAALLVTLLG 494
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
 80-175 6.73e-16

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 71.43  E-value: 6.73e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078593   80 YSFPLFYYSMSGDNNFYPNFYFNDNSYFISFMMICMLLMAVFSGSFLSLLIFPTPYIITLPWYLKFMTLFVVILGSYFGG 159
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIFPKPPMMTMPLYLKLLALLVTILGLLLGL 80

                          90
                  ....*....|....*.
gi 823078593  160 FITNIEFSYYLFSLSF 175
Cdd:pfam06455  81 ELSNLSNKQLKKSLNF 96
ND5 MTH00137
NADH dehydrogenase subunit 5; Provisional
 1-154 1.15e-15

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214428 [Multi-domain]  Cd Length: 611  Bit Score: 73.71  E-value: 1.15e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078593   1 AGCTILNLKDSPDIRYMGSVVNFMPLTSICFNVSSLSLCGFPFLAGFYSKDLILEIVCLSWVNFLIFFFYFFSTGLTASY 80
Cdd:MTH00137 348 SGSIIHSLNDEQDIRKMGGLHHLTPFTSSCLTIGSLALTGTPFLAGFFSKDAIIEALNTSHLNAWALTLTLIATSFTAVY 427

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 823078593  81 SFPLFYYSMSGDNNFYPNFYFNDNSYFISFMMICMLLMAVFSGSFLSLLIFP--TPyIITLPWYLKFMTLFVVILG 154
Cdd:MTH00137 428 SLRVVFFVSMGHPRFNPLSPINENNPAVINPIKRLAWGSIIAGLLITSNILPlkTP-VMTMPPLLKLAALIVTILG 502
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 1-170 2.06e-15

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 72.80  E-value: 2.06e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078593   1 AGCTILNLKDSPDIRYMGSVVNFMPLTSICFNVSSLSLCGFPFLAGFYSKDLILEIVCLSWVNFLIFFFYFFSTGLTASY 80
Cdd:MTH00020 343 AGSVIHALSDEQDMRKMGGLISFLPLTYIFFLIGSLSLMGFPYLTGFYSKDLILELAFGQYYLIFAYWLGCFSALLTAFY 422

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078593  81 SFPLFYYSMSGDNNFYPNFYFN--DNSYFISFMMICMLLMAVFSGSFLSLLIFpTPYIITLPWYLKFMTLFVVILGsyFG 158
Cdd:MTH00020 423 SIRLIYLTFLSNTNLKKAVFFHlhEGDWNLLLPLGILALGSIFVGYLAKEMIW-SFQITLPPIVPLSIKLLPVFLS--LG 499

                        170
                 ....*....|..
gi 823078593 159 GFITNIEFSYYL 170
Cdd:MTH00020 500 GIGLVIILYFYS 511
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
 1-85 1.17e-12

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 64.79  E-value: 1.17e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078593   1 AGCTILNLKDSPDIRYMGSVVNFMPLTSICFNVSSLSLCGFPFLAGFYSKDLILEiVCLSWVNFLIFFFYFFSTGLTASY 80
Cdd:PRK06590 350 AGSVIHAMHHEQDIRKMGGLRKKMPVTYATFLIGTLALIGIPPFAGFFSKDEILE-AAFANGHINLFVAGLVGAFLTAFY 428


                 ....*
gi 823078593  81 SFPLF 85
Cdd:PRK06590 429 SFRLI 433
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
 1-163 1.38e-12

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 64.64  E-value: 1.38e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078593   1 AGCTILNLKDSPDIRYMGSVVNFMPLTSICFNVSSLSLCGFPFLAGFYSKDLILEIVCLSWVNFLIFFFYFFSTGLTASY 80
Cdd:MTH00210 344 AGSVIHAVSDEQDMRKMGGLIKSIPFTYVMILIGSLSLMGFPYLTGFYSKDLILELTYDKYYIAFAYWLGSFSALLTAFY 423

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078593  81 SFPLFYYSMSGDNNFYPNFYFN--DNSYFISFMMICMLLMAVFSGSFLSLLIFPTPYIITLPWYLKFMTLFVVILGSYFG 158
Cdd:MTH00210 424 SIRLIYLTFITNTNSKKEVFIGvhESSWNITFPLLLLAFGSIFVGYLGKEVVLSNVIPPIVPNSIKMIPLLFSLLGALLA 503


                 ....*
gi 823078593 159 GFITN 163
Cdd:MTH00210 504 FVIYN 508
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 13-161 1.08e-10

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 59.40  E-value: 1.08e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078593  13 DIRYMGSVVNFMPLTSICFNVSSLSLCGFPFLAGFYSKDLILE-IVCLSWVNFLIFFFYFFSTGLTASYSFPLFYYSMSG 91
Cdd:COG1009  355 DIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaALEAGGLGPLLLAVALLGAFLTAFYSFRLFFLVFFG 434

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 823078593  92 DNNFYPNFYFNDNSYFISFMMICMLLMAVFSGSFLSLL---------IFPTPYIITLPWYLKFMTLFVVILGSYFGGFI 161
Cdd:COG1009  435 KPRPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLlegllapaaVLGGELHLAHGLLLNALPLLLSLLGIALGYLL 513
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
13-92 1.08e-09

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 56.57  E-value: 1.08e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078593  13 DIRYMGSVVNFMPLTSICFNVSSLSLCGFPFLAGFYSKDLILEIVCLSwvNFLIFFFYFFSTGLTASYSFPLFYYSMSGD 92
Cdd:PRK07376 380 DMRLMGGLRKYMPITAITFLIGCLAISGIPPFAGFWSKDEILGAAFEA--NPALWFVGFLTAGMTAFYMFRMYFLTFEGE 457
ndhF CHL00025
NADH dehydrogenase subunit 5
 16-109 1.48e-06

NADH dehydrogenase subunit 5


Pssm-ID: 214338 [Multi-domain]  Cd Length: 741  Bit Score: 47.19  E-value: 1.48e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078593  16 YMGSVVNFMPLTSICFNVSSLSLCGFPFLAGFYSKDlilEIVCLSWVNFLIFFFYFFST-GLTASYSFPLFYYSMSGDNN 94
Cdd:CHL00025 383 LMGGLRKYMPITKTTFLLGTLSLCGIPPLACFWSKD---EILNDSWLYSPIFAIIAWSTaGLTAFYMFRIYLLTFEGHLR 459

                         90
                 ....*....|....*.
gi 823078593  95 FY-PNFYFNDNSYFIS 109
Cdd:CHL00025 460 VHfQNYSGKKNSSFYS 475
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-55 3.41e-06

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 45.77  E-value: 3.41e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 823078593    1 AGCTILNLKDSPDIRYMGSVVNFMPLTSICFNVSSLSLCGFPFLAGFYSKDLILE 55
Cdd:pfam00361 219 AGSVIYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 10-56 4.18e-06

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 46.10  E-value: 4.18e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 823078593  10 DSPDIRYMGSVVNFMPLTSICFNVSSLSLCGFPFLAGFYSKDLILEI 56
Cdd:MTH00032 369 DEQDMRKMGGLIHSIPFTYTMMLIGSFSIMGLPYLTGFYSKDLILEL 415
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 13-55 9.77e-04

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 38.59  E-value: 9.77e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 823078593  13 DIRYMGSVVNFMPLTSICFNVSSLSLCGFPFLAGFYSKDLILE 55
Cdd:COG0651  355 DLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQ 397
PRK12668 PRK12668
Na(+)/H(+) antiporter subunit D;
24-54 6.67e-03

Na(+)/H(+) antiporter subunit D;


Pssm-ID: 237168 [Multi-domain]  Cd Length: 581  Bit Score: 36.41  E-value: 6.67e-03
                         10        20        30
                 ....*....|....*....|....*....|.
gi 823078593  24 MPLTSICFNVSSLSLCGFPFLAGFYSKDLIL 54
Cdd:PRK12668 334 MPLTALFCLVGALSISAFPLFSGFVSKSMII 364
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH