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Conserved domains on  [gi|823078569|gb|AKI26696|]
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NADH dehydrogenase subunit 5, partial (mitochondrion) [Eyprepocnemis plorans meridionalis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND5 super family cl33362
NADH dehydrogenase subunit 5; Provisional
 1-177 1.39e-58

NADH dehydrogenase subunit 5; Provisional


The actual alignment was detected with superfamily member MTH00165:

Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 191.89  E-value: 1.39e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078569   1 AGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGIPFLAGFYSSDLILEMVCLSSINCMIFFIYFFSTGWTASY 80
Cdd:MTH00165 312 AGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSY 391

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078569  81 SFRWFYYSMSGDNNFYSSFSFDDKGYYISFGMIGLLFVAVFGGSLLSWLIFPIPYIIILPFYLKFLTITVVVLGSYLGYL 160
Cdd:MTH00165 392 SFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYE 471

                        170
                 ....*....|....*..
gi 823078569 161 ISNSNFSDELFSLNMLS 177
Cdd:MTH00165 472 LSLMSLSYNLKSLKNYK 488
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-177 1.39e-58

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 191.89  E-value: 1.39e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078569   1 AGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGIPFLAGFYSSDLILEMVCLSSINCMIFFIYFFSTGWTASY 80
Cdd:MTH00165 312 AGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSY 391

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078569  81 SFRWFYYSMSGDNNFYSSFSFDDKGYYISFGMIGLLFVAVFGGSLLSWLIFPIPYIIILPFYLKFLTITVVVLGSYLGYL 160
Cdd:MTH00165 392 SFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYE 471

                        170
                 ....*....|....*..
gi 823078569 161 ISNSNFSDELFSLNMLS 177
Cdd:MTH00165 472 LSLMSLSYNLKSLKNYK 488
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
 80-175 1.86e-18

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 77.98  E-value: 1.86e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078569   80 YSFRWFYYSMSGDNNFYSSFSFDDKGYYISFGMIGLLFVAVFGGSLLSWLIFPIPYIIILPFYLKFLTITVVVLGSYLGY 159
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIFPKPPMMTMPLYLKLLALLVTILGLLLGL 80

                          90
                  ....*....|....*.
gi 823078569  160 LISNSNFSDELFSLNM 175
Cdd:pfam06455  81 ELSNLSNKQLKKSLNF 96
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 1-161 3.24e-15

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 72.49  E-value: 3.24e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078569   1 AGSMIHNLSdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGIPFLAGFYSSDLILE-MVCLSSINCMIFFIYFFSTGWTAS 79
Cdd:COG1009  344 AGSVIHATG-TRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaALEAGGLGPLLLAVALLGAFLTAF 422

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078569  80 YSFRWFYYSMSGDNNFYSSFSFDDKGYYISFGMIGLLFVAVFGGSLLSWL---------IFPIPYIIILPFYLKFLTITV 150
Cdd:COG1009  423 YSFRLFFLVFFGKPRPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLlegllapaaVLGGELHLAHGLLLNALPLLL 502

                        170
                 ....*....|.
gi 823078569 151 VVLGSYLGYLI 161
Cdd:COG1009  503 SLLGIALGYLL 513
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-177 1.39e-58

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 191.89  E-value: 1.39e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078569   1 AGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGIPFLAGFYSSDLILEMVCLSSINCMIFFIYFFSTGWTASY 80
Cdd:MTH00165 312 AGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSY 391

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078569  81 SFRWFYYSMSGDNNFYSSFSFDDKGYYISFGMIGLLFVAVFGGSLLSWLIFPIPYIIILPFYLKFLTITVVVLGSYLGYL 160
Cdd:MTH00165 392 SFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYE 471

                        170
                 ....*....|....*..
gi 823078569 161 ISNSNFSDELFSLNMLS 177
Cdd:MTH00165 472 LSLMSLSYNLKSLKNYK 488
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
 1-166 4.90e-36

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 131.31  E-value: 4.90e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078569   1 AGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGIPFLAGFYSSDLILEMVCLSSINCMIFFIYFFSTGWTASY 80
Cdd:MTH00209 308 AGNIIHSHGHSQDIRMVGNLWYQMPITSICLNIANLSLCGIPFLAGFYSKDLILESMLESNMPIMTLILMFLSTSLTAAY 387

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078569  81 SFRWFYYSMSGDNNFYSSFSFDDKGYYISFGMIGLLFVAVFGGSLLSWLIFPIPYIIILPFYLKFLTITVVVLGSYLGYL 160
Cdd:MTH00209 388 SMRLSYFSLWGPNSSKSLNSSFDQNKLNLKPMLVLTLGSITGGSVMSWVMVPSVNSVVLPWFLKLLPIMLILFGVLLMYM 467


                 ....*.
gi 823078569 161 ISNSNF 166
Cdd:MTH00209 468 VLKKNF 473
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 1-175 1.27e-33

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 124.49  E-value: 1.27e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078569   1 AGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGIPFLAGFYSSDLILEMVCLSSINCMIFFIYFFSTGWTASY 80
Cdd:MTH00207 312 AGSLIHSHHHSQDLRTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILESSLFYPHNSLMILMIFLATALTAAY 391

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078569  81 SFRWFYYSMSGDNNFYSSFSFDDKGYYISFGMIGLLFVAVFGGSLLSWLIFPIPYIIILPFYLKFLTITVVVLGSYLGYL 160
Cdd:MTH00207 392 STRFTLAVLWSPNSSSPYHHLEDEDKSLTTPMLLLTLGAITSGSALNWWLPTPQEEPILPLQYKLLPLLVVTLGALLAWL 471

                        170
                 ....*....|....*
gi 823078569 161 ISNSNFSDELFSLNM 175
Cdd:MTH00207 472 FTTPNITKTPLLINN 486
ND5 MTH00151
NADH dehydrogenase subunit 5; Provisional
 1-173 1.57e-31

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214436 [Multi-domain]  Cd Length: 565  Bit Score: 118.79  E-value: 1.57e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078569   1 AGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGIPFLAGFYSSDLILEMVCLSSINCMIFFIYFFSTGWTASY 80
Cdd:MTH00151 309 AGSIIHSSSGTQDIRLLGSLFLSLPLTSGCLNISSLSLCGAPFLSGFYSKDLILESSLMSPTSLLMVLLMFVGVGLTALY 388

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078569  81 SFRWFYYSMSGDNNFYSSFSFDDKGYYISFGMIGLLFVAVFGGSLLSWLIFPIPYIIILPFYLKFLTITVVVLGSYLGYL 160
Cdd:MTH00151 389 SARLSFCLVWGSMKSSSLSSKSDEDFYVSLPMLLLSLGALIGGKLLQSLFEGFSEEFFLPSYLKLLIGFVILLGLFLSFG 468

                        170
                 ....*....|...
gi 823078569 161 ISNSNFSDELFSL 173
Cdd:MTH00151 469 FWDSGFSSSKMVK 481
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
 1-164 1.33e-25

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 102.29  E-value: 1.33e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078569   1 AGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGIPFLAGFYSSDLILEMVCLSSINCMIFFIYFFSTGWTASY 80
Cdd:MTH00066 340 SGSIIHSLNDEQDIRKMGGLQKALPITTSCLTIGSLALTGTPFLAGFFSKDAIIEAMNTSNLNSWALILTLIATSFTAVY 419

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078569  81 SFRWFYYSMSGDNNFYSSFSFDDKGYYISFGMIGLLFVAVFGGSLLSWLIFPI-PYIIILPFYLKFLTITVVVLGSYLGY 159
Cdd:MTH00066 420 SFRIIYFSSMKFPRSLPLSPINENNPLIINPIKRLAWGSIIAGLLIIFNILPMkPQILTMPTFMKLAALLVTLLGLLIAL 499


                 ....*
gi 823078569 160 LISNS 164
Cdd:MTH00066 500 DLAKI 504
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 2-177 7.57e-25

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 100.03  E-value: 7.57e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078569   2 GSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGIPFLAGFYSSDLILEMVCLSSINCMIFFIYFFSTGWTASYS 81
Cdd:MTH00211 338 GSIIHGLNNEQDIRKMGGLSKNLPFTSSCLFLGSLALMGFPFLSGFFSKDLILESMNGSYLNAWALLLTLLATSLTAAYS 417

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078569  82 FRWFYYSMSGDNNFYSSFSFDDKGYYISFGMIGLLFVAVFGGSLLSWLIFPIPYIII-LPFYLKFLTITVVVLGSYLGYL 160
Cdd:MTH00211 418 FRLIFLSLGGYPRFLSLSPINENYKLLKNPLKRLALGSILAGFIITSNLPPEKPEILsLPFLLKLMPLLVTIVGLLLGLE 497

                        170
                 ....*....|....*..
gi 823078569 161 ISNSNFSDELFSLNMLS 177
Cdd:MTH00211 498 LVNLTHKQLKTSTLSFS 514
ND5 MTH00208
NADH dehydrogenase subunit 5; Provisional
 2-165 2.88e-24

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177251 [Multi-domain]  Cd Length: 628  Bit Score: 98.50  E-value: 2.88e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078569   2 GSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGIPFLAGFYSSDLILEMVCLSSINCMIFFIYFFSTGWTASYS 81
Cdd:MTH00208 370 GSIIHSLNNEQDLRKMGGLSFLLPVTSSCIILGSLALMGTPFLAGFYSKDLILEAGLASISNLLSIILALIATLLTAVYS 449

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078569  82 FRWFYYSMSGDNNFYSSFSFDDKGYYISFGMIGLLFVAVFGGSLLSWLIFPIPyIIILPFYLKFLTITVVVLGSYLGYLI 161
Cdd:MTH00208 450 FRIIFFCFLNNPSFSPLSPISEENPNLTNPLLRLAIGTIISGWFFSNFVFNLP-PLTLPLILKSLPLIVTIIGAAFSFSF 528


                 ....
gi 823078569 162 SNSN 165
Cdd:MTH00208 529 LLSL 532
ND5 MTH00004
NADH dehydrogenase subunit 5; Validated
 1-163 9.78e-24

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 214398 [Multi-domain]  Cd Length: 602  Bit Score: 96.77  E-value: 9.78e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078569   1 AGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGIPFLAGFYSSDLILEMVCLSSINCMIFFIYFFSTGWTASY 80
Cdd:MTH00004 342 SGSIIHNLNNEQDIRKMGGLQKTLPITSSCLTIGNLALMGTPFLSGFYSKDTIIETLNTSYLNAWALLLTLLATSFTAAY 421

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078569  81 SFRWFYYSMSGDNNFYSSFSFDDKGYYISFGMIGLLFVAVFGGSLLSWLIFPI-PYIIILPFYLKFLTITVVVLGSYLGY 159
Cdd:MTH00004 422 SLRMILLVQTGFPRTPPTTPINENTPTIINPITRLALGSILAGLLISSTILPTkTPPMTMPTTTKLAALIVTILGILLAL 501


                 ....
gi 823078569 160 LISN 163
Cdd:MTH00004 502 ELSN 505
ND5 MTH00108
NADH dehydrogenase subunit 5; Provisional
 1-154 1.03e-22

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177170 [Multi-domain]  Cd Length: 602  Bit Score: 93.76  E-value: 1.03e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078569   1 AGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGIPFLAGFYSSDLILEMVCLSSINCMIFFIYFFSTGWTASY 80
Cdd:MTH00108 343 SGSIIHNLNDEQDIRKMGGLFKTLPFTSTALIIGSLALTGMPFLTGFYSKDLIIEAANTSYTNAWALLITLIATSLTAAY 422

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 823078569  81 SFRWFYYSMSGDNNFYSSFSFDDKGYYISFGMIGLLFVAVFGGSLLSWLIFPIPYIII-LPFYLKFLTITVVVLG 154
Cdd:MTH00108 423 STRIIFFALLGQPRFPPLITINENNPLLINPIKRLLLGSIFAGFLISNNIPPTTIPQMtMPLYLKLTALAVTILG 497
ND5 MTH00137
NADH dehydrogenase subunit 5; Provisional
 1-89 3.95e-20

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214428 [Multi-domain]  Cd Length: 611  Bit Score: 86.42  E-value: 3.95e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078569   1 AGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGIPFLAGFYSSDLILEMVCLSSINCMIFFIYFFSTGWTASY 80
Cdd:MTH00137 348 SGSIIHSLNDEQDIRKMGGLHHLTPFTSSCLTIGSLALTGTPFLAGFFSKDAIIEALNTSHLNAWALTLTLIATSFTAVY 427

                         90
                 ....*....|
gi 823078569  81 SFRW-FYYSM 89
Cdd:MTH00137 428 SLRVvFFVSM 437
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
 80-175 1.86e-18

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 77.98  E-value: 1.86e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078569   80 YSFRWFYYSMSGDNNFYSSFSFDDKGYYISFGMIGLLFVAVFGGSLLSWLIFPIPYIIILPFYLKFLTITVVVLGSYLGY 159
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIFPKPPMMTMPLYLKLLALLVTILGLLLGL 80

                          90
                  ....*....|....*.
gi 823078569  160 LISNSNFSDELFSLNM 175
Cdd:pfam06455  81 ELSNLSNKQLKKSLNF 96
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 1-162 1.50e-17

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 78.97  E-value: 1.50e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078569   1 AGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGIPFLAGFYSSDLILEMVCLSSINCMIFFIYFFSTGWTASY 80
Cdd:MTH00020 343 AGSVIHALSDEQDMRKMGGLISFLPLTYIFFLIGSLSLMGFPYLTGFYSKDLILELAFGQYYLIFAYWLGCFSALLTAFY 422

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078569  81 SFRWFYYS-MSGDNNFYSSFSFDDKGYYISFGMIGLL-FVAVFGGSLLSWLI-------FPIPYIII--LPFYLKFL-TI 148
Cdd:MTH00020 423 SIRLIYLTfLSNTNLKKAVFFHLHEGDWNLLLPLGILaLGSIFVGYLAKEMIwsfqitlPPIVPLSIklLPVFLSLGgIG 502

                        170
                 ....*....|....
gi 823078569 149 TVVVLGSYLGYLIS 162
Cdd:MTH00020 503 LVIILYFYSSKTFR 516
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
 1-168 8.10e-17

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 76.97  E-value: 8.10e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078569   1 AGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGIPFLAGFYSSDLILEMVCLSSINCMIFFIYFFSTGWTASY 80
Cdd:MTH00210 344 AGSVIHAVSDEQDMRKMGGLIKSIPFTYVMILIGSLSLMGFPYLTGFYSKDLILELTYDKYYIAFAYWLGSFSALLTAFY 423

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078569  81 SFRWFYYSMSGDNNFYSS--FSFDDKGYYISFGMIGLLFVAVFGGSLLSWLIFPIPYIIILPFYLKFLTITVVVLGSYLG 158
Cdd:MTH00210 424 SIRLIYLTFITNTNSKKEvfIGVHESSWNITFPLLLLAFGSIFVGYLGKEVVLSNVIPPIVPNSIKMIPLLFSLLGALLA 503

                        170
                 ....*....|
gi 823078569 159 YLISNSNFSD 168
Cdd:MTH00210 504 FVIYNSMVFL 513
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
 1-83 2.16e-16

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 75.58  E-value: 2.16e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078569   1 AGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGIPFLAGFYSSDLILEmVCLSSINCMIFFIYFFSTGWTASY 80
Cdd:PRK06590 350 AGSVIHAMHHEQDIRKMGGLRKKMPVTYATFLIGTLALIGIPPFAGFFSKDEILE-AAFANGHINLFVAGLVGAFLTAFY 428


                 ...
gi 823078569  81 SFR 83
Cdd:PRK06590 429 SFR 431
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 1-161 3.24e-15

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 72.49  E-value: 3.24e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078569   1 AGSMIHNLSdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGIPFLAGFYSSDLILE-MVCLSSINCMIFFIYFFSTGWTAS 79
Cdd:COG1009  344 AGSVIHATG-TRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaALEAGGLGPLLLAVALLGAFLTAF 422

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078569  80 YSFRWFYYSMSGDNNFYSSFSFDDKGYYISFGMIGLLFVAVFGGSLLSWL---------IFPIPYIIILPFYLKFLTITV 150
Cdd:COG1009  423 YSFRLFFLVFFGKPRPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLlegllapaaVLGGELHLAHGLLLNALPLLL 502

                        170
                 ....*....|.
gi 823078569 151 VVLGSYLGYLI 161
Cdd:COG1009  503 SLLGIALGYLL 513
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
2-92 1.06e-13

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 68.13  E-value: 1.06e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078569   2 GSMIHNLSD--------SQDIRFMGSIVNFMPLTSVCFNVSSLSLCGIPFLAGFYSSDLILEMVCLSsiNCMIFFIYFFS 73
Cdd:PRK07376 361 GSVIHGMEEvvghdpvlAQDMRLMGGLRKYMPITAITFLIGCLAISGIPPFAGFWSKDEILGAAFEA--NPALWFVGFLT 438

                         90
                 ....*....|....*....
gi 823078569  74 TGWTASYSFRWFYYSMSGD 92
Cdd:PRK07376 439 AGMTAFYMFRMYFLTFEGE 457
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-73 4.96e-09

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 53.86  E-value: 4.96e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 823078569    1 AGSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGIPFLAGFYSSDLILEMVCLSSINCMIFFIYFFS 73
Cdd:pfam00361 219 AGSVIYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
ndhF CHL00025
NADH dehydrogenase subunit 5
 1-83 7.74e-09

NADH dehydrogenase subunit 5


Pssm-ID: 214338 [Multi-domain]  Cd Length: 741  Bit Score: 53.74  E-value: 7.74e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078569   1 AGSMIHNL--------SDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGIPFLAGFYSSDLILEMVCLSSINCMIffIYFF 72
Cdd:CHL00025 360 SGSVIHSMepivgyspDKSQNMVLMGGLRKYMPITKTTFLLGTLSLCGIPPLACFWSKDEILNDSWLYSPIFAI--IAWS 437

                         90
                 ....*....|.
gi 823078569  73 STGWTASYSFR 83
Cdd:CHL00025 438 TAGLTAFYMFR 448
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 1-56 3.37e-08

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 51.88  E-value: 3.37e-08
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 823078569   1 AGSMIHNLS-DSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGIPFLAGFYSSDLILEM 56
Cdd:MTH00032 359 AGSVIHSTTvDEQDMRKMGGLIHSIPFTYTMMLIGSFSIMGLPYLTGFYSKDLILEL 415
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 1-55 9.15e-04

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 38.97  E-value: 9.15e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 823078569   1 AGSMIHNLsDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGIPFLAGFYSSDLILE 55
Cdd:COG0651  344 AGAIERAT-GTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQ 397
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-86 1.44e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 38.41  E-value: 1.44e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078569   1 AGSMIHNlSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGIPFLAGFYSSDLILEMVCLSSINCMIFFIYFFSTgWTASY 80
Cdd:PRK12667 367 SGVFIHA-AGTRDIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASA-ISLVG 444


                 ....*.
gi 823078569  81 SFRWFY 86
Cdd:PRK12667 445 YFRAWY 450
ND5 MTH00095
NADH dehydrogenase subunit 5; Provisional
 2-148 4.12e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177158 [Multi-domain]  Cd Length: 527  Bit Score: 36.82  E-value: 4.12e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823078569   2 GSMIHNLSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGIPFLAGFYSSDLILEMVCLSSINCMIFFIYFFSTGWTASYS 81
Cdd:MTH00095 297 GYLIHSNFGQQDGRNYSNNGNLPMFIQLQLLVTLFCLCGLMFTSGMVSKELILELFFFNNYMIFFSLMFFFSVFLTFGYS 376

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 823078569  82 FRWFYysmsgdnNFYSSFSFDDKGYYISFGMIGLLFVAVFGG-SLLSWLIFPIPYIIILPFYLKFLTI 148
Cdd:MTH00095 377 YRLWK-------SFFLSFSKVVNVYSSSVLMNFLSLMLVFFSvFFLWWLNFNLLNLPSLFLYLDFYVP 437
PRK07390 PRK07390
NAD(P)H-quinone oxidoreductase subunit F; Validated
 1-49 6.18e-03

NAD(P)H-quinone oxidoreductase subunit F; Validated


Pssm-ID: 236008 [Multi-domain]  Cd Length: 613  Bit Score: 36.43  E-value: 6.18e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 823078569   1 AGSMIHNlSDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGIPFLAGFYS 49
Cdd:PRK07390 353 VGSIILT-TITQDLTELGGLWSRMPATTLAFLVGSAGLVALLPLGGFWA 400
PRK12650 PRK12650
DUF4040 family protein;
11-55 9.78e-03

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 35.79  E-value: 9.78e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 823078569  11 SQDIRFMGSIVNFMPLTSVCFNVSSLSLCGIPFLAGFYSSDLILE 55
Cdd:PRK12650 353 TRDIRRLGSLWRRMPFTFVSVTIAALSMAAVPPLFGFVSKEGMLT 397
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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