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DNA primase/helicase, partial [Salmonella phage SEN2]
P-loop NTPase family protein( domain architecture ID 1562424)
P-loop NTPase (nucleoside triphosphate hydrolase) family protein contains two conserved sequence signatures, the Walker A motif (the P-loop proper) and Walker B motif which bind, respectively, the beta and gamma phosphate moieties of the bound nucleotide (typically ATP or GTP), and a Mg(2+) cation
List of domain hits
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Name | Accession | Description | Interval | E-value | |||
RepA super family | cl34641 | RecA-family ATPase [Replication, recombination and repair]; |
24-149 | 6.66e-12 | |||
RecA-family ATPase [Replication, recombination and repair]; The actual alignment was detected with superfamily member COG3598: Pssm-ID: 442817 [Multi-domain] Cd Length: 313 Bit Score: 63.00 E-value: 6.66e-12
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Name | Accession | Description | Interval | E-value | |||
RepA | COG3598 | RecA-family ATPase [Replication, recombination and repair]; |
24-149 | 6.66e-12 | |||
RecA-family ATPase [Replication, recombination and repair]; Pssm-ID: 442817 [Multi-domain] Cd Length: 313 Bit Score: 63.00 E-value: 6.66e-12
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RepA_RSF1010_like | cd01125 | Hexameric Replicative Helicase RepA of plasmid RSF1010 and related proteins; This family ... |
40-185 | 1.00e-09 | |||
Hexameric Replicative Helicase RepA of plasmid RSF1010 and related proteins; This family includes the homo-hexameric replicative helicase RepA encoded by plasmid RSF1010. RSF1010 is found in most Gram-negative bacteria and some Gram-positive bacteria . The RepA protein of Plasmid RSF1010 is a 5'-3' DNA helicase which can utilize ATP, dATP, GTP and dGTP (and CTP and dCTP to a lesser extent). Pssm-ID: 410870 Cd Length: 238 Bit Score: 55.85 E-value: 1.00e-09
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AAA_25 | pfam13481 | AAA domain; This AAA domain is found in a wide variety of presumed DNA repair proteins. |
26-108 | 1.01e-06 | |||
AAA domain; This AAA domain is found in a wide variety of presumed DNA repair proteins. Pssm-ID: 463892 [Multi-domain] Cd Length: 193 Bit Score: 46.99 E-value: 1.01e-06
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Name | Accession | Description | Interval | E-value | |||
RepA | COG3598 | RecA-family ATPase [Replication, recombination and repair]; |
24-149 | 6.66e-12 | |||
RecA-family ATPase [Replication, recombination and repair]; Pssm-ID: 442817 [Multi-domain] Cd Length: 313 Bit Score: 63.00 E-value: 6.66e-12
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RepA_RSF1010_like | cd01125 | Hexameric Replicative Helicase RepA of plasmid RSF1010 and related proteins; This family ... |
40-185 | 1.00e-09 | |||
Hexameric Replicative Helicase RepA of plasmid RSF1010 and related proteins; This family includes the homo-hexameric replicative helicase RepA encoded by plasmid RSF1010. RSF1010 is found in most Gram-negative bacteria and some Gram-positive bacteria . The RepA protein of Plasmid RSF1010 is a 5'-3' DNA helicase which can utilize ATP, dATP, GTP and dGTP (and CTP and dCTP to a lesser extent). Pssm-ID: 410870 Cd Length: 238 Bit Score: 55.85 E-value: 1.00e-09
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RecA-like_Gp4D_helicase | cd19483 | RecA-like domain of Escherichia coli bacteriophage T7 Gp4D helicase; This family includes the ... |
23-146 | 4.47e-09 | |||
RecA-like domain of Escherichia coli bacteriophage T7 Gp4D helicase; This family includes the RecA-like domain of the Gp4D fragment of the Gene4 helicase-primase (Gp4) from bacteriophage T7. Gp4D (residues 241-566) is the minimal fragment of the Gp4 that forms hexameric rings, it contains the helicase domain and the linker connecting the helicase and primase domains. Helicases are ring-shaped oligomeric enzymes that unwind DNA at the replication fork; they couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands. This family belongs to the RecA-like NTPase superfamily which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. Pssm-ID: 410891 [Multi-domain] Cd Length: 231 Bit Score: 54.11 E-value: 4.47e-09
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AAA_25 | pfam13481 | AAA domain; This AAA domain is found in a wide variety of presumed DNA repair proteins. |
26-108 | 1.01e-06 | |||
AAA domain; This AAA domain is found in a wide variety of presumed DNA repair proteins. Pssm-ID: 463892 [Multi-domain] Cd Length: 193 Bit Score: 46.99 E-value: 1.01e-06
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Twinkle_C | cd01122 | C-terminal domain of Twinkle; Twinkle ( T7 gp4-like protein with intramitochondrial nucleoid ... |
38-145 | 3.94e-05 | |||
C-terminal domain of Twinkle; Twinkle ( T7 gp4-like protein with intramitochondrial nucleoid localization, also known as C10orf2, PEO1, SCA8, ATXN8, IOSCA, PEOA3 or SANDO) is a homohexameric DNA helicases which unwinds short stretches of double-stranded DNA in the 5' to 3' direction and, along with mitochondrial single-stranded DNA binding protein and mtDNA polymerase gamma, is thought to play a key role in mtDNA replication. Mutations in the human gene cause infantile onset spinocerebellar ataxia (IOSCA) and progressive external ophthalmoplegia (PEO) and are also associated with several mitochondrial depletion syndromes. This group also contains viral GP4-like and related bacterial helicases. Pssm-ID: 410867 Cd Length: 266 Bit Score: 43.00 E-value: 3.94e-05
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Blast search parameters | ||||
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