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portal protein, partial [Salmonella phage SEN2]
List of domain hits
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Name | Accession | Description | Interval | E-value | |||
P22_portal super family | cl24922 | Phage P22-like portal protein; The portal protein of P22 and similar Podoviridae tail phages ... |
1-81 | 1.38e-32 | |||
Phage P22-like portal protein; The portal protein of P22 and similar Podoviridae tail phages is a dodecameric structure consisting of a hip (2), a leg(1) and a barrel(3). DNA viruses such as bacteriophages and herpesviruses deliver their genome into and out of the capsid through large proteinaceous assemblies, known as portal proteins. Domains 1 and 3 are mostly helical and form the majority of the DNA-translocating channel. Domain 2 adopts an alpha-beta-fold characterized by two sheets of eight beta-strands, which cross each other to form a beta-barrel-like structure. The actual alignment was detected with superfamily member pfam16510: Pssm-ID: 293119 Cd Length: 668 Bit Score: 120.08 E-value: 1.38e-32
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Name | Accession | Description | Interval | E-value | |||
P22_portal | pfam16510 | Phage P22-like portal protein; The portal protein of P22 and similar Podoviridae tail phages ... |
1-81 | 1.38e-32 | |||
Phage P22-like portal protein; The portal protein of P22 and similar Podoviridae tail phages is a dodecameric structure consisting of a hip (2), a leg(1) and a barrel(3). DNA viruses such as bacteriophages and herpesviruses deliver their genome into and out of the capsid through large proteinaceous assemblies, known as portal proteins. Domains 1 and 3 are mostly helical and form the majority of the DNA-translocating channel. Domain 2 adopts an alpha-beta-fold characterized by two sheets of eight beta-strands, which cross each other to form a beta-barrel-like structure. Pssm-ID: 293119 Cd Length: 668 Bit Score: 120.08 E-value: 1.38e-32
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Name | Accession | Description | Interval | E-value | |||
P22_portal | pfam16510 | Phage P22-like portal protein; The portal protein of P22 and similar Podoviridae tail phages ... |
1-81 | 1.38e-32 | |||
Phage P22-like portal protein; The portal protein of P22 and similar Podoviridae tail phages is a dodecameric structure consisting of a hip (2), a leg(1) and a barrel(3). DNA viruses such as bacteriophages and herpesviruses deliver their genome into and out of the capsid through large proteinaceous assemblies, known as portal proteins. Domains 1 and 3 are mostly helical and form the majority of the DNA-translocating channel. Domain 2 adopts an alpha-beta-fold characterized by two sheets of eight beta-strands, which cross each other to form a beta-barrel-like structure. Pssm-ID: 293119 Cd Length: 668 Bit Score: 120.08 E-value: 1.38e-32
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Blast search parameters | ||||
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