NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|821522982|ref|WP_046844910|]
View 

MULTISPECIES: 50S ribosomal protein L31 [Deinococcus]

Protein Classification

50S ribosomal protein L31( domain architecture ID 10000810)

50S ribosomal protein L31 binds the 23S rRNA in a Zn(II)-dependent manner

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
RpmE COG0254
Ribosomal protein L31 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L31 ...
 1-70 1.02e-29

Ribosomal protein L31 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L31 is part of the Pathway/BioSystem: Ribosome 50S subunit


:

Pssm-ID: 440024  Cd Length: 72  Bit Score: 99.84  E-value: 1.02e-29
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 821522982  1 MKKDIHPKVVPTKIIYQGKVVMETLST--KPEIHVDVWSGVHPFWTGEERFVDTEGRVDKFNKRFGDSYRNK 70
Cdd:COG0254   1 MKKGIHPEYREVVVTCSCGNEFLTRSTleYPEIKVDVCSACHPFYTGKQKIVDTAGRVEKFNKRYGKFGKKK 72
 
Name Accession Description Interval E-value
RpmE COG0254
Ribosomal protein L31 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L31 ...
 1-70 1.02e-29

Ribosomal protein L31 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L31 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440024  Cd Length: 72  Bit Score: 99.84  E-value: 1.02e-29
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 821522982  1 MKKDIHPKVVPTKIIYQGKVVMETLST--KPEIHVDVWSGVHPFWTGEERFVDTEGRVDKFNKRFGDSYRNK 70
Cdd:COG0254   1 MKKGIHPEYREVVVTCSCGNEFLTRSTleYPEIKVDVCSACHPFYTGKQKIVDTAGRVEKFNKRYGKFGKKK 72
rpmE PRK00528
50S ribosomal protein L31; Reviewed
 1-66 2.77e-29

50S ribosomal protein L31; Reviewed


Pssm-ID: 179057  Cd Length: 71  Bit Score: 98.49  E-value: 2.77e-29
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 821522982  1 MKKDIHPKVVPTKIIYQGKVVMETLST----KPEIHVDVWSGVHPFWT-GEERFVDTEGRVDKFNKRFGDS 66
Cdd:PRK00528  1 MKKDIHPDYHPIKVVMTDGTEYETRSTwgktGPELRLDIDSGNHPAWTgGTQKLLDTGGRVAKFNKKFGGL 71
Ribosomal_L31 pfam01197
Ribosomal protein L31;
1-64 4.65e-29

Ribosomal protein L31;


Pssm-ID: 460107  Cd Length: 65  Bit Score: 97.87  E-value: 4.65e-29
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 821522982   1 MKKDIHPKVVPTKIIYQGKVVMETLST-KPEIHVDVWSGVHPFWTGEERFVDTEGRVDKFNKRFG 64
Cdd:pfam01197  1 MKKGIHPEYREVTVTCTCGNTFLTRSTeYPEIKVDVCSACHPFYTGKQKLVDTAGRVEKFNKRYG 65
L31 TIGR00105
ribosomal protein L31; This family consists exclusively of bacterial (and organellar) 50S ...
 1-64 8.75e-23

ribosomal protein L31; This family consists exclusively of bacterial (and organellar) 50S ribosomal protein L31. In some species, such as Bacillus subtilis, this protein exists in two forms (RpmE and YtiA), one of which (RpmE) contains a pair of motifs, CXC and CXXC, for binding zinc. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 272907  Cd Length: 68  Bit Score: 81.95  E-value: 8.75e-23
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 821522982   1 MKKDIHPKVVPTKIIYQGKVVMETLSTKPE--IHVDVWSGVHPFWTGEERFVDTEGRVDKFNKRFG 64
Cdd:TIGR00105  1 MKKDIHPDYHEITVTCTCGNVFTTRSTWGKetLNLDICSKCHPFYTGKQKIVDTGGRVDKFNKKFG 66
 
Name Accession Description Interval E-value
RpmE COG0254
Ribosomal protein L31 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L31 ...
 1-70 1.02e-29

Ribosomal protein L31 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L31 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440024  Cd Length: 72  Bit Score: 99.84  E-value: 1.02e-29
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 821522982  1 MKKDIHPKVVPTKIIYQGKVVMETLST--KPEIHVDVWSGVHPFWTGEERFVDTEGRVDKFNKRFGDSYRNK 70
Cdd:COG0254   1 MKKGIHPEYREVVVTCSCGNEFLTRSTleYPEIKVDVCSACHPFYTGKQKIVDTAGRVEKFNKRYGKFGKKK 72
rpmE PRK00528
50S ribosomal protein L31; Reviewed
 1-66 2.77e-29

50S ribosomal protein L31; Reviewed


Pssm-ID: 179057  Cd Length: 71  Bit Score: 98.49  E-value: 2.77e-29
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 821522982  1 MKKDIHPKVVPTKIIYQGKVVMETLST----KPEIHVDVWSGVHPFWT-GEERFVDTEGRVDKFNKRFGDS 66
Cdd:PRK00528  1 MKKDIHPDYHPIKVVMTDGTEYETRSTwgktGPELRLDIDSGNHPAWTgGTQKLLDTGGRVAKFNKKFGGL 71
Ribosomal_L31 pfam01197
Ribosomal protein L31;
1-64 4.65e-29

Ribosomal protein L31;


Pssm-ID: 460107  Cd Length: 65  Bit Score: 97.87  E-value: 4.65e-29
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 821522982   1 MKKDIHPKVVPTKIIYQGKVVMETLST-KPEIHVDVWSGVHPFWTGEERFVDTEGRVDKFNKRFG 64
Cdd:pfam01197  1 MKKGIHPEYREVTVTCTCGNTFLTRSTeYPEIKVDVCSACHPFYTGKQKLVDTAGRVEKFNKRYG 65
rpmE PRK00019
50S ribosomal protein L31; Reviewed
 1-70 3.60e-25

50S ribosomal protein L31; Reviewed


Pssm-ID: 234576  Cd Length: 72  Bit Score: 88.06  E-value: 3.60e-25
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 821522982  1 MKKDIHPKVVPTKIIYQGKVVMETLST--KPEIHVDVWSGVHPFWTGEERFVDTEGRVDKFNKRFGDSYRNK 70
Cdd:PRK00019  1 MKKDIHPKYEEVTVTCSCGNVFETRSTlgKDEINVDVCSKCHPFYTGKQKIVDTGGRVERFNKRFGKKGKKK 72
rpl31 CHL00136
ribosomal protein L31; Validated
 1-64 4.31e-25

ribosomal protein L31; Validated


Pssm-ID: 177058  Cd Length: 68  Bit Score: 87.78  E-value: 4.31e-25
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 821522982  1 MKKDIHPKVVP-TKIIYQGKVVMETLSTKPEIHVDVWSGVHPFWTGEERFVDTEGRVDKFNKRFG 64
Cdd:CHL00136  2 PKKNIHPQWFPeTKVYCDGQLVMTVGSTKPELNVDIWSGNHPFYTGSQKIIDTEGRVERFMKKYG 66
L31 TIGR00105
ribosomal protein L31; This family consists exclusively of bacterial (and organellar) 50S ...
 1-64 8.75e-23

ribosomal protein L31; This family consists exclusively of bacterial (and organellar) 50S ribosomal protein L31. In some species, such as Bacillus subtilis, this protein exists in two forms (RpmE and YtiA), one of which (RpmE) contains a pair of motifs, CXC and CXXC, for binding zinc. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 272907  Cd Length: 68  Bit Score: 81.95  E-value: 8.75e-23
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 821522982   1 MKKDIHPKVVPTKIIYQGKVVMETLSTKPE--IHVDVWSGVHPFWTGEERFVDTEGRVDKFNKRFG 64
Cdd:TIGR00105  1 MKKDIHPDYHEITVTCTCGNVFTTRSTWGKetLNLDICSKCHPFYTGKQKIVDTGGRVDKFNKKFG 66
rpmE2 PRK01678
type B 50S ribosomal protein L31;
1-72 3.53e-17

type B 50S ribosomal protein L31;


Pssm-ID: 234969  Cd Length: 87  Bit Score: 68.37  E-value: 3.53e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 821522982  1 MKKDIHP---KVV----------PTKIIYQGK--VVMETLSTKPEIHVDVWSGVHPFWTGEERFVDTEGRVDKFNKRFGD 65
Cdd:PRK01678  1 MKKGIHPeyrPVVfhdtstgfkfLTGSTITTDetIEWEDGKTYPLVKVEISSASHPFYTGKQKFVDTEGRVEKFNKRFGR 80


                ....*..
gi 821522982 66 SYRNKKK 72
Cdd:PRK01678 81 FASKKKK 87
PRK01397 PRK01397
50S ribosomal protein L31; Provisional
 1-72 1.63e-06

50S ribosomal protein L31; Provisional


Pssm-ID: 179294  Cd Length: 78  Bit Score: 41.09  E-value: 1.63e-06
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 821522982  1 MKKDIHPkvvPTK--IIYQGKVVMETLSTKP--EIHVDVWSGVHPFWTGEER-FVDTEGR-VDKFNKRF-GDSYRNKKK 72
Cdd:PRK01397  1 MKSGIHP---EYKkfLIKVGSDVFETMSTHPtgEILMDVDFRKHPAWNKDSGnVVNQSNKsVSDFNKRFsGLSFGSKKE 76
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH