|
Name |
Accession |
Description |
Interval |
E-value |
| PRK15217 |
PRK15217 |
fimbrial outer membrane usher protein; Provisional |
1-361 |
0e+00 |
|
fimbrial outer membrane usher protein; Provisional
Pssm-ID: 185139 [Multi-domain] Cd Length: 826 Bit Score: 740.06 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 1 MLRMTPLASAIVALLLGIEAYAAEETFDTHFMIGGMKDQQVANIRLDDNQPLPGQYDIDIYVNKQWRGKYEIIVKDNPQE 80
Cdd:PRK15217 1 MLRMTPLASAIVALLLGIEAYAAEETFDTHFMIGGMKGQKVSNYRLDDNQPLPGQYEIDIYVNKQWRGKYEIIVKDNPQE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 81 TCLSREVIKRLGINSDNFASGKQCLTFEQLVQGGSYTWDIGVFRLDFSVPQAWVEELESGYVPPENWERGINAFYTSYYV 160
Cdd:PRK15217 81 TCLSRELIKRLGIKSDNFATEKQCITLKQLVQGGSYTWDIGVFRLDLSVPQAYVEELEAGYVPPENWDRGINAFYTSYYA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 161 SQYYSDYKASGNSKSTYVRFNSGLNLLGWQLHSDASFSKTNNNPGVWKSNTLYLERGFAQLLGTLRVGDMYTSSDIFDSV 240
Cdd:PRK15217 161 SQYYSDYKASGNSKSTYVRFNSGLNLLGWQLHSDASFSKTDNNPGEWKSNTLYLERGFAQLLGTLRVGDMYTSSDIFDSV 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 241 RFRGVRLFRDMQMLPNSKQNFTPRVQGIAQSNALVIIEQNGFVVYQKEVPPGPFAITDLQLAGGGADLDVSVKEADGSVT 320
Cdd:PRK15217 241 RFSGVRLFRDMQMLPNSKQNFTPRVQGIAQSNALVTIEQNGFVVYQKEVPPGPFAIADLQLAGGGADLDVSVKEADGSVT 320
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 817676246 321 TYLVPYAAVPNMLQPGVSKYDFAAGRSHIEGASKHSDFVQA 361
Cdd:PRK15217 321 TYLVPYASVPNMLQPGVSKYDFAAGRSHIEGASKQSDFVQA 361
|
|
| FimD |
COG3188 |
Outer membrane usher protein FimD/PapC [Cell motility, Extracellular structures]; |
2-361 |
5.33e-129 |
|
Outer membrane usher protein FimD/PapC [Cell motility, Extracellular structures];
Pssm-ID: 442421 [Multi-domain] Cd Length: 817 Bit Score: 388.84 E-value: 5.33e-129
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 2 LRMTPLASAIVALLLGIEAYA-AEETFDTHFMIGGMKDQQVANIRLDDNQPLPGQYDIDIYVNKQWRGKYEIIVKDNPQ- 79
Cdd:COG3188 2 SRRRRLALLLLLLLALAAAAAaAAVEFNPAFLDGDDAAAIDLSRFSRGNYVPPGTYYLDVYVNGQPLGRGDITFVADRDd 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 80 ---ETCLSREVIKRLGINSDNFAS----GKQCLTFeQLVQGGSYTWDIGVFRLDFSVPQAWVEELESGYVPPENWERGIN 152
Cdd:COG3188 82 grlQPCLTPELLEQLGLKLDALPAllaaDGQCVDL-SAIPGASVRFDFATQRLDLSVPQAALPYQARGYVPPSLWDDGIP 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 153 AFYTSYYVSQYYSDYKASGNSKSTYVRFNSGLNLLGWQLHSDASFSKTNNNPGVWKSNTLYLERGFAQLLGTLRVGDMYT 232
Cdd:COG3188 161 ALLLNYDLNASRSRGRSGSASESRYLGLNSGLNLGAWRLRNNSSYSYSSGGGSGWQRLDTYLQRDIPALRSQLTLGDSYT 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 233 SSDIFDSVRFRGVRLFRDMQMLPNSKQNFTPRVQGIAQSNALVIIEQNGFVVYQKEVPPGPFAITDLQLAGGGADLDVSV 312
Cdd:COG3188 241 SSDWFDSVRFRGVQLASDFRMLPDSLRGYAPVVRGIAASNATVTVRQNGYVIYQTTVPPGPFEINDLPPTGGAGDLDVTV 320
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 817676246 313 KEADGSVTTYLVPYAAVPNMLQPGVSKYDFAAGRSHIEG-ASKHSDFVQA 361
Cdd:COG3188 321 TEADGREQTFTVPFASVPQLLRPGLSRYSLAAGRYRRNGsFDYGPPFAQG 370
|
|
| Usher |
pfam00577 |
Outer membrane usher protein; In Gram-negative bacteria the biogenesis of fimbriae (or pili) ... |
177-361 |
1.26e-86 |
|
Outer membrane usher protein; In Gram-negative bacteria the biogenesis of fimbriae (or pili) requires a two- component assembly and transport system which is composed of a periplasmic chaperone and an outer membrane protein which has been termed a molecular 'usher'. The usher protein is rather large (from 86 to 100 Kd) and seems to be mainly composed of membrane-spanning beta-sheets, a structure reminiscent of porins. Although the degree of sequence similarity of these proteins is not very high they share a number of characteriztics. One of these is the presence of two pairs of cysteines, the first one located in the N-terminal part and the second at the C-terminal extremity that are probably involved in disulphide bonds. The best conserved region is located in the central part of these proteins.
Pssm-ID: 425762 [Multi-domain] Cd Length: 549 Bit Score: 271.48 E-value: 1.26e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 177 YVRFNSGLNLLGWQLHSDASFSKTNNNPGVWKSNTLYLERGFAQLLGTLRVGDMYTSSDIFDSVRFRGVRLFRDMQMLPN 256
Cdd:pfam00577 1 YLNLQSGLNLGAWRLRNDSNWTQSRGNTGKWQNSRTYLQRAIPQLKSRLTLGESYTSSDIFDSFSFRGVQLASDDNMLPD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 257 SKQNFTPRVQGIAQSNALVIIEQNGFVVYQKEVPPGPFAITDLQLAGGGADLDVSVKEADGSVTTYLVPYAAVPNMLQPG 336
Cdd:pfam00577 81 SLRGYAPVIRGIARTNARVTIRQNGYVIYQTLVPPGPFEITDLYPTGSSGDLDVTVEEADGSVQTFTVPYSSVPLLLRPG 160
|
170 180
....*....|....*....|....*.
gi 817676246 337 VSKYDFAAGRSHIEGA-SKHSDFVQA 361
Cdd:pfam00577 161 QVRYSLAAGRYRSGNSdQESPFFFQA 186
|
|
| PRK09828 |
PRK09828 |
putative fimbrial outer membrane usher protein; Provisional |
13-345 |
1.51e-80 |
|
putative fimbrial outer membrane usher protein; Provisional
Pssm-ID: 182098 [Multi-domain] Cd Length: 865 Bit Score: 263.15 E-value: 1.51e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 13 ALLLGIEAYAAEET-FDTHFMIGgmkdQQVANIRL----DDNQPLPGQYDIDIYVNKQWRGKYEIIVKDNPQ---ETCLS 84
Cdd:PRK09828 21 ALLYSNSAACAELVeYDHTFLMG----QGASNIDLsrysEGNPTLPGTYDVSVYVNDQPISSQSIPFIDIGKknaQACIT 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 85 REVIKRLGINSDNFASGKQ-----------CLTFEQLVQGGSYTWDIGVFRLDFSVPQAWVEELESGYVPPENWERGINA 153
Cdd:PRK09828 97 LKNLLQFHIKSPDINNEKAillarddelgdCLNLTKIIPQASVRYDVSDQRLDIDVPQAWVMKNYQGYVDPSLWENGINA 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 154 FYTSYYVSQYYSDYKaSGNSKSTYVRFNSGLNLLGWQLHSDASFSKTNNNPGVWKSNTLYLERGFAQLLGTLRVGDMYTS 233
Cdd:PRK09828 177 AMLSYNLNGYHSESP-GRTNDSIYAAFNGGINLGAWRLRARGNYNWMTDSGSDYDFQNRYLQRDIAALRSQLIIGESYTT 255
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 234 SDIFDSVRFRGVRLFRDMQMLPNSKQNFTPRVQGIAQSNALVIIEQNGFVVYQKEVPPGPFAITDLQLAGGGADLDVSVK 313
Cdd:PRK09828 256 GETFDSVSIRGIRLYSDSRMLPPGLASYAPIIRGVANSNAKVTITQSGYKIYETTVPPGAFVIDDLSPSGYGSDLIVTIE 335
|
330 340 350
....*....|....*....|....*....|..
gi 817676246 314 EADGSVTTYLVPYAAVPNMLQPGVSKYDFAAG 345
Cdd:PRK09828 336 EADGSKRTFSQPFSSVVQMLRPGVGRWDISAG 367
|
|
| PRK15193 |
PRK15193 |
outer membrane usher protein; Provisional |
3-361 |
1.97e-74 |
|
outer membrane usher protein; Provisional
Pssm-ID: 237919 [Multi-domain] Cd Length: 876 Bit Score: 246.74 E-value: 1.97e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 3 RMTPLASAIvALLLGIEAYAAEETFDTHFMIGGmkDQQVANI-RLDDN-QPLPGQYDIDIYVNKQWRGKYEI---IVKDN 77
Cdd:PRK15193 16 GVPSLALGI-VVFVSAGNAQAETYFNPAFLSDD--PSMVADLsRFEKGaKIAAGVYRVDIVLNNTFVATRDVnfvEIKTT 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 78 PQET---------CLSREVIKRLGINSDNFASGKQ-----CLTFEQLVQGGSYTWDIGVFRLDFSVPQAWVEELESGYVP 143
Cdd:PRK15193 93 GKSAptddkglaaCLTTESLDAMGVNTDAFPAFKQlakgaCPPLASIIPDASVTFDFNKQRLDISVPQIAIKSSARGYIP 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 144 PENWERGINAFYTSYYVSQYYS-DYKASGNSKSTY-VRFNSGLNLLGWQLHSDASFSKT---NNNPGVWKSNTLYLERGF 218
Cdd:PRK15193 173 PERWDEGINALLLNYSFSGANSiHSSADSDSGDSYfLGLNSGVNLGPWRLRNYSTWNRSsgqTAEDSDWQHISSYLERAV 252
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 219 AQLLGTLRVGDMYTSSDIFDSVRFRGVRLFRDMQMLPNSKQNFTPRVQGIAQSNALVIIEQNGFVVYQKEVPPGPFAITD 298
Cdd:PRK15193 253 IPLKGELTAGDSYTAGDFFDSVSFRGVQLASDDNMLPDSLKGFAPTVRGIAKSNAQVTIKQNGYTIYQTYVSPGAFEISD 332
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 817676246 299 LQLAGGGADLDVSVKEADGSVTTYLVPYAAVPNMLQPGVSKYDFAAGRSHIEGASKH-SDFVQA 361
Cdd:PRK15193 333 LYPTSSSGDLLVEVKEADGSINSYSVPYSAVPLLQREGRIKYAVTLAKYRTNSNEQQeVKFAQA 396
|
|
| PRK15298 |
PRK15298 |
fimbrial outer membrane usher protein; |
47-361 |
1.47e-60 |
|
fimbrial outer membrane usher protein;
Pssm-ID: 185198 [Multi-domain] Cd Length: 848 Bit Score: 208.84 E-value: 1.47e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 47 DDNQPLPGQYDIDIYVNKQWRGKYEI-----IVKDNPQ--ETCLSREVIKRLGINSDNFA---SGKQCLTFeQLVQGGSY 116
Cdd:PRK15298 57 NDKSQLPGTYYVTININKTEIGARNVdfqlaTLSDGQQalQGCLRLQELKDNGVKTDLFPtleSEKGCVDL-SVIPGASQ 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 117 TWDIGVFRLDFSVPQAWVEELESGYVPPENWERGINAFYTSYYVSQY--YSDYKASGNSKSTYVRFNSGLNLLGWQLHSD 194
Cdd:PRK15298 136 RFDFQQQALSVSIPQLYIANNARGYVPPEKWQEGITALMLNYSFSGYkeYGSSEDSDDAESKYLALQPGFNLGPWRFRNY 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 195 ASFSKTNNNPGVWKSNTLYLERGFAQLLGTLRVGDMYTSSDIFDSVRFRGVRLFRDMQMLPNSKQNFTPRVQGIAQSNAL 274
Cdd:PRK15298 216 SNWSSNNGESGSWNSVYNYLQRDIIALKSQFTAGDSNTPSDVFDSVPFRGLQLTSDDQMQPNSQRGYAPTIRGIARSNAQ 295
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 275 VIIEQNGFVVYQKEVPPGPFAITDLQLAGGGADLDVSVKEADGSVTTYLVPYAAVPNMLQPGVSKYDFAAGRSHIEGASK 354
Cdd:PRK15298 296 VIVRQNGYIAYQTAVSPGEFEINDMFPTGSNGDYDVTVKEADGSEQHFIVPYSSLPILQRTGRAKYSVTVGKYRDYNNHT 375
|
....*..
gi 817676246 355 HSDFVQA 361
Cdd:PRK15298 376 LDDFGQA 382
|
|
| PRK15198 |
PRK15198 |
outer membrane usher protein FimD; |
3-345 |
3.96e-60 |
|
outer membrane usher protein FimD;
Pssm-ID: 185120 [Multi-domain] Cd Length: 860 Bit Score: 207.46 E-value: 3.96e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 3 RMTPLASAIVALLLGIEAYAaEETFDTHFMIGgmKDQQVANI-RLDD-NQPLPGQYDIDIYVNKQWRGKYEIIVKDNPQE 80
Cdd:PRK15198 7 CLAGVALSSLAILPPFLSYA-ESYFNPAFLSE--DTASVADLsRFERgNHQPPGVYRVDIWRNDEFIGTQDIRFESTTVN 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 81 T---------CLSREVIKRLGINSDNF-ASGKQ----CLTFEQLVQGGSYTWDIGVFRLDFSVPQAWVEELESGYVPPEN 146
Cdd:PRK15198 84 TgdksgglmpCFTQELLERLGVNSSAFpELAQQqdnkCINLLKAIPGAEIAFDFASMRLNISLPQIALLNSARGYIPPEE 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 147 WERGINAFYTSYYvsqyYSDYKASGNSkSTYVRFNSGLNLLGWQLHSDASFSKTNNN---PGVWKSNTLYLERGFAQLLG 223
Cdd:PRK15198 164 WDEGIPAALLNYS----FTGNRGNDND-SYFLSLLSGLNYGPWRLRNNGAWNYFRGNgyhSEQWNNIGTWVQRAIIPLKS 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 224 TLRVGDMYTSSDIFDSVRFRGVRLFRDMQMLPNSKQNFTPRVQGIAQSNALVIIEQNGFVVYQKEVPPGPFAITDLQLAG 303
Cdd:PRK15198 239 ELVMGDSNTGNDVFDSVGFRGARLYSSDNMYPDSLQGYAPTVRGIARTAAKLTIRQNGYVIYQSYVSPGAFAITDLNPTS 318
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 817676246 304 GGADLDVSVKEADGSVTTYLVPYAAVPNMLQPGVSKYDFAAG 345
Cdd:PRK15198 319 SSGDLDVTVDEKDGNQQRYTVPYSTVPLLQREGRVKYDLVAG 360
|
|
| PRK15248 |
PRK15248 |
fimbrial outer membrane usher protein; |
1-346 |
4.77e-58 |
|
fimbrial outer membrane usher protein;
Pssm-ID: 185160 [Multi-domain] Cd Length: 853 Bit Score: 201.61 E-value: 4.77e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 1 MLRMTPLASAIVALLLGI----EAYAAEETFDTHFMIGGMKDQQVAniRLDDNQPLPGQYDIDIYVNKQWRGKYEII--- 73
Cdd:PRK15248 1 MSPTINLNRKSLALLIAIvcsgSAQGEEYYFDPALLQGATYGQNIA--RFNEQQTPSGDYLADVYVNGTLVTSSTNIrfn 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 74 --VKDNPQETCLSREVIKRLGINS-DNFASGKQCLTFEQLVQGGSYTWDIGVFRLDFSVPQAWVEELESGYVPPENWERG 150
Cdd:PRK15248 79 avKEGQQTEPCLPLSVMKAAQIKSlPATDAATECRPLREWVPHAGWQFDSATLRLLLTIPMTELTHKPRGYISPSEWDSG 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 151 INAFY----TSYY-----VSQYYSDYKASGnskstyvrFNSGLNLLGWQL--HSDASFSKTNNNPGVWKSNTL--YLERG 217
Cdd:PRK15248 159 ALALFlrhnTNWThtentDSHYRYQYLWSG--------LNMGVNLGLWQVrhQSNLRYANSNQSGSAWRYNSVrtWVQRP 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 218 FAQLLGTLRVGDMYTSSDIFDSVRFRGVRLFRDMQMLPNSKQNFTPRVQGIAQSNALVIIEQNGFVVYQKEVPPGPFAIT 297
Cdd:PRK15248 231 VASINSILSLGDSYTDSSLFGSLSFNGIKLVTDERMRPQGKRGYAPEVRGVAASSAHVVVKQLGKVIYETNVPPGPFYID 310
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 817676246 298 DLQLAGGGADLDVSVKEADGSVTTYLVPYAAVPNMLQPGVSKYDFAAGR 346
Cdd:PRK15248 311 DLYNTRYQGDLEVEVIEASGKTSRFTVPYSSVPDSVRPGNWHYSLAFGR 359
|
|
| PRK15207 |
PRK15207 |
outer membrane usher protein LpfC; |
6-345 |
4.24e-57 |
|
outer membrane usher protein LpfC;
Pssm-ID: 185129 [Multi-domain] Cd Length: 842 Bit Score: 198.98 E-value: 4.24e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 6 PLASAIVALLLGIEAYAAEETFDTHFM--IGGMkDQQVANIRLDDN--QPLPGQYDIDIYVNKQWRGKYEIIVKDNPQET 81
Cdd:PRK15207 14 HFSFSLLALTIASTLPAYAGKFNPKFLedVQGI-DQHVDLSMYESPvgQQLPGKYRVSVFVNEEKMESRTLEFKAATEAQ 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 82 ----------CLSREVIKRLGINSDNF-----ASGKQCLTFEQLVQGGSYTWDIGVFRLDFSVPQAWVEELESGYVPPEN 146
Cdd:PRK15207 93 rkamgeslvpCLSRVQLEEMGVRVDSFpalkmAPPEACVAFDEIIPQATSHFDFNTQTLHLSFPQAAMMQTARGTVPESR 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 147 WERGINAFYTSYYVSQYYSDYKASG-----NSKSTYVRFNSGLNLLGWQLHSDASFSKTNNNpGVWKSNTLYLERGFAQL 221
Cdd:PRK15207 173 WDEGIPALLLDYSFSGSNGSYDGTGssssyTSDSYYLNLRSGLNLGAWRLRNYSTWNRTDGK-NQWDNIGTSLSRAIIPL 251
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 222 LGTLRVGDMYTSSDIFDSVRFRGVRLFRDMQMLPNSKQNFTPRVQGIAQSNALVIIEQNGFVVYQKEVPPGPFAITDLQL 301
Cdd:PRK15207 252 KSQLTLGDTATAGDIFDSVQMRGALLASDEEMLPDSQRGFAPVVRGIAKSNAEVSIEQNGYVIYRTFVQPGAFEINDLYP 331
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 817676246 302 AGGGADLDVSVKEADGSVTTYLVPYAAVPNMLQPGVSKYDFAAG 345
Cdd:PRK15207 332 TSNSGDLTVIIKEADGSEQRFIQPFSSVAIFQREGHLKYSLAAG 375
|
|
| PRK15294 |
PRK15294 |
fimbrial outer membrane usher protein; |
54-347 |
1.37e-55 |
|
fimbrial outer membrane usher protein;
Pssm-ID: 185194 [Multi-domain] Cd Length: 845 Bit Score: 194.96 E-value: 1.37e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 54 GQYDIDIYVNKQWRGKYEIIVKDNPQ-------ETCLSREVIKRLGINSDNFASGKQ----CLTFeQLVQGGSYTWDIGV 122
Cdd:PRK15294 60 GTYNVDIYINNTSVETKNIAFKNKKSadnklslQPCLSVEQLKQWGVKTENFPELKNdpngCTDL-SLLAGAVAKFNVIG 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 123 FRLDFSVPQAWVEELESGYVPPENWERGINAFYTSY-YVSQYYSDYKASGNSKSTYVRFNSGLNLLGWQLHSDASFSKTN 201
Cdd:PRK15294 139 NRLDLAIPQIALIADPREFVPTSEWDEGINAFLLNYsFTGSQDHDIDENRTENSEYANLRPGINIGAWRFRNYSTWNHDS 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 202 NNPGVWKSNTLYLERGFAQLLGTLRVGDMYTSSDIFDSVRFRGVRLFRDMQMLPNSKQNFTPRVQGIAQSNALVIIEQNG 281
Cdd:PRK15294 219 DGQNSWDSAYTYVSRDIEFLKGQLIAGENNTPADVFDSISFKGVQISSDDDMLPDSMKGFAPVIRGVAKSSAQVTVEQNG 298
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 817676246 282 FVVYQKEVPPGPFAITDLQLAGGGADLDVSVKEADGSVTTYLVPYAAVPNMLQPGVSKYDFAAGRS 347
Cdd:PRK15294 299 YTIYKTNVPAGPFAINDLYPTGGSGDLYVTIKESDGSEQHFIVPYASVPVLQREGHLKYDLTVGRT 364
|
|
| PRK15213 |
PRK15213 |
outer membrane usher protein PefC; |
7-347 |
1.96e-51 |
|
outer membrane usher protein PefC;
Pssm-ID: 237926 [Multi-domain] Cd Length: 797 Bit Score: 182.64 E-value: 1.96e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 7 LASAIVALLLGIEAYAAEEtFDTHFMIGGMKDQ-QVANirLDDNQPlPGQYDIDIYVNKQWRGKYEIIVkdNPQET---C 82
Cdd:PRK15213 13 LALAIFTHLGFASAVAGEE-LNMSFIQGGGGIPpEVLA--SNGDYP-PGRYLVDVIFNGKKIGKAILSI--TPQEAealC 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 83 LSREVIKRLGI--NSDNFASG----KQC--LTFEQLVQggsYTWDIGVFRLDFSVPQA-WVEELESGyvppeNWERGINA 153
Cdd:PRK15213 87 LSPEWLKKAGIpvSLEYYRSGydaaRQCyvLSKAPSVQ---VDFDYSTQSLTLSIPQAgLVKKPEPV-----EWDYGVPA 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 154 FYTSYYVsqYYSdyKASGNSKSTYVRFNSGLNLLGWQLHSDASFSKTNNNPGVWKSNTLYLERGFAQLLGTLRVGDMYTS 233
Cdd:PRK15213 159 FRLNYSA--NAS--KTSRQNTSAYGNADLKANLGRWVLSSRASASRGAGGSNEFTTNDFTLTTAIKSLQGDLLVGKTQTG 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 234 SDIFDSVRFRGVRLFRDMQMLPNSKQNFTPRVQGIAQSNALVIIEQNGFVVYQKEVPPGPFAITDLQLAGGGaDLDVSVK 313
Cdd:PRK15213 235 NSLLGSFGFYGASLRSNNDMLPWENRGYAPVISGIANGPSRVTISQNGYTLYSEVVPAGPFQLDDVPLVGSG-DLTVTVE 313
|
330 340 350
....*....|....*....|....*....|....
gi 817676246 314 EADGSVTTYLVPYAAVPNMLQPGVSKYDFAAGRS 347
Cdd:PRK15213 314 EEDGHKTTQVFPVAVLPGLLRPGEHEYNVAAGLK 347
|
|
| PRK15223 |
PRK15223 |
fimbrial biogenesis outer membrane usher protein; |
53-361 |
1.81e-50 |
|
fimbrial biogenesis outer membrane usher protein;
Pssm-ID: 185145 [Multi-domain] Cd Length: 836 Bit Score: 180.59 E-value: 1.81e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 53 PGQYDIDIYVNKQWRGKYEII--VKDNPQET-----CLSREVIKRLGINSDNFA-------SGKQCLTFEQLVQGgSYTW 118
Cdd:PRK15223 50 PGTYRVDVMVNGKRVDTRDVVfkLEKDGQGTpflapCLTVSQLSRYGVKTEDYPqlwkaakTPDECADLTAIPQA-KAVL 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 119 DIGVFRLDFSVPQAWVEELESGYVPPENWERGINAFYTSYYVSQYYSDYKA--SGNSKSTYVRFNSGLNLLGWQLHSDAS 196
Cdd:PRK15223 129 DINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMdmERRDNSSWVQLQPGINIGAWRVRNATS 208
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 197 FSKTNNNPGVWKSNTLYLERGFAQLLGTLRVGDMYTSSDIFDSVRFRGVRLFRDMQMLPNSKQNFTPRVQGIAQSNALVI 276
Cdd:PRK15223 209 WQRSSQLSGKWQAAYTYAERGLYSLKSRLTLGQKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVE 288
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 277 IEQNGFVVYQKEVPPGPFAITDLQLAGGGADLDVSVKEADGSVTTYLVPYAAVPNMLQPGVSKYDFAAGR-SHIEGASKH 355
Cdd:PRK15223 289 VKQNGYTIYNTTVAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRyRSSDSATDK 368
|
....*.
gi 817676246 356 SDFVQA 361
Cdd:PRK15223 369 AQIAQA 374
|
|
| PRK15255 |
PRK15255 |
fimbrial outer membrane usher protein StdB; Provisional |
53-356 |
7.57e-49 |
|
fimbrial outer membrane usher protein StdB; Provisional
Pssm-ID: 185167 [Multi-domain] Cd Length: 829 Bit Score: 175.72 E-value: 7.57e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 53 PGQYDIDIYVNKQ-WRGKYEI----IVKDNPQETCLSREVIKRLGINsDNFASG---------KQCLTFEQLVQGGSYTW 118
Cdd:PRK15255 50 PGNYILDIWLNDQpVREQYPVrvvpVAGRDAAVICVTTDMVAMLGLK-DKIIHGlkpvtgipdGQCLELRSADSQVRYSA 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 119 DIGvfRLDFSVPQAWVEELESGYVPPENWERGINAFYTSY--YVSQYYSDYKASGNSKSTYvrFNSGLNLLGWQLHSDAS 196
Cdd:PRK15255 129 ENQ--RLTFIIPQAWMRYQDPDWVPPSRWSDGVTAGLLDYslMVNRYMPQQGETSTSYSLY--GTAGFNLGAWRLRSDYQ 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 197 FSKTNNNPGVWKSN----TLYLERGFAQLLGTLRVGDMYTSSDIFDSVRFRGVRLFRDMQMLPNSKQNFTPRVQGIAQSN 272
Cdd:PRK15255 205 YSRFDSGQGASQSDfylpQTYLFRALPALRSKLTLGQTYLSSAIFDSFRFAGLTLASDERMLPPSLQGYAPKISGIANSN 284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 273 ALVIIEQNGFVVYQKEVPPGPFAITDLQLAGGGaDLDVSVKEADGSVTTYLVPYAAVPNMLQPGVSKYDFAAGRSHIEGA 352
Cdd:PRK15255 285 AQVTVSQNGRILYQTRVSPGPFELPDLSQNISG-NLDVSVRESDGSVRTWQVNTASVPFMARQGQVRYKVAAGRPLYGGT 363
|
....
gi 817676246 353 SKHS 356
Cdd:PRK15255 364 HNNS 367
|
|
| PRK15235 |
PRK15235 |
outer membrane fimbrial usher protein SefC; Provisional |
50-346 |
4.84e-46 |
|
outer membrane fimbrial usher protein SefC; Provisional
Pssm-ID: 185150 [Multi-domain] Cd Length: 814 Bit Score: 167.98 E-value: 4.84e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 50 QPLPGQYDIDIYVNKQWRGKYEIIVKDNPQ--ETCLSREVIKRLGINSDNFA----SGKQCLTFEQlvQGGSYTWDIGVF 123
Cdd:PRK15235 46 ETLPGNYVVDVYLNNQLKETTELYFKSMTQtlEPCLTKEKLIKYGIAIQELHglqfDNEQCVLLEH--SPLKYTYNAANQ 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 124 RLDFSVPQAWVEELESGYVPPENWERGINAFYTSYYVSQYYSDYkasGNSKSTYVRFNSGLNLLGWQLHSDASFSKTNNN 203
Cdd:PRK15235 124 SLLLNAPSKILSPIDSEIADENIWDDGINAFLLNYRANYLHSKV---GGEDSYFGQIQPGFNFGPWRLRNLSSWQNLSSE 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 204 PGvWKSNTLYLERGFAQLLGTLRVGDMYTSSDIFDSVRFRGVRLFRDMQMLPNSKQNFTPRVQGIAQSNALVIIEQNGFV 283
Cdd:PRK15235 201 KK-FESAYIYAERGLKKIKSKLTVGDKYTSADLFDSVPFRGFSLNKDESMIPFSQRTYYPTIRGIAKTNATVEVRQNGYL 279
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 817676246 284 VYQKEVPPGPFAITDLQLAGGGAD---LDVSVKEADGSVTTYLVPYAAVPNMLQPGVSKYDFAAGR 346
Cdd:PRK15235 280 IYSTSVPPGQFEIGREQIADLGVGvgvLDVSIYEKNGQVQNYTVPYSTPVLSLPDGYSKYSVTIGR 345
|
|
| PapC_N |
pfam13954 |
PapC N-terminal domain; The PapC N-terminal domain is a structural domain found at the ... |
26-162 |
4.58e-42 |
|
PapC N-terminal domain; The PapC N-terminal domain is a structural domain found at the N-terminus of the E. coli PapC protein. Pili are assembled using the chaperone usher system. In E.coli this is composed of the chaperone PapD and the usher PapC. This domain represents the N-terminal domain from PapC and its homologs. This domain is involved in substrate binding.
Pssm-ID: 433603 [Multi-domain] Cd Length: 146 Bit Score: 143.52 E-value: 4.58e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 26 TFDTHFMIGGmkDQQVANI-RLD-DNQPLPGQYDIDIYVNKQWRGKYEIIVKDNPQ----ETCLSREVIKRLGINSDNFA 99
Cdd:pfam13954 1 EFNPDFLDGS--GAAGVDLsRFSrGNYVLPGTYRVDVYVNGRWIGRQDVRFVADPGdgglEPCLTPELLEQLGVKTDKLP 78
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 817676246 100 SGKQ-----CLTFEQLVQGGSYTWDIGVFRLDFSVPQAWVEELESGYVPPENWERGINAFYTSYYVSQ 162
Cdd:pfam13954 79 ALADaqlgaCVDLAALIPGASARFDFAQQRLDLSIPQAYLRRSARGYVPPSLWDDGIPAALLNYNANA 146
|
|
| PRK15284 |
PRK15284 |
putative fimbrial outer membrane usher protein StfC; Provisional |
2-351 |
8.19e-41 |
|
putative fimbrial outer membrane usher protein StfC; Provisional
Pssm-ID: 185184 [Multi-domain] Cd Length: 881 Bit Score: 153.10 E-value: 8.19e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 2 LRMTPLASAIVALLLGIEAYAAEE-TFDTHFMigGMKDQQVANIRLDDNQP--LPGQYDIDIYVNKQ-WRGKYEI---IV 74
Cdd:PRK15284 9 LRILAWCIALAMSGGYVNAWAEDDiQFDSRFL--ELKGDTKIDLKRFSSKGyvEPGKYNLQVQLNKQpLAEEYDIywyAS 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 75 KDNPQET--CLSREVIKRLGINSD-----NFASGKQCLTFEQLvQGGSYTWDIGVFRLDFSVPQAWVEELESGYVPPENW 147
Cdd:PRK15284 87 ENDPSKTyaCLTPELVAQLGLKEDiaknlQWIHDGKCLKPGQL-EGMEIKADLSQSALVISLPQAYLEYTDPDWDPPSRW 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 148 ERGINAFYTSYYV-SQYYSDYKASGNSKSTYVRFNSGLNLLGWQLHSD--ASFSKTNNNPGV-----------WKSNTLY 213
Cdd:PRK15284 166 DDGIPGLIADYSInAQTRHEENGGDDSNDISGNGTVGVNLGAWRLRADwqTNYQHTRSNDDDdefsgsstqknWDWSRYY 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 214 LERGFAQLLGTLRVGDMYTSSDIFDSVRFRGVRLFRDMQMLPNSKQNFTPRVQGIAQSNALVIIEQNGFVVYQKEVPPGP 293
Cdd:PRK15284 246 AWRALPSLKAKLALGEDYLNSDIFDGFNYVGGSVSTDDQMLPPNLRGYAPDISGVAHTTAKVTVSQMGRVIYETQVPAGP 325
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 817676246 294 FAITDLQLAGGGaDLDVSVKEADGSVTTYLVPYAAVPNMLQPGVSKYDFAAGRS-----HIEG 351
Cdd:PRK15284 326 FRIQDIGDSVSG-TLHVRIEEQNGQVQEYDVSTASMPFLTRPGQVRYKLMMGRPqdwghHVEG 387
|
|
| PRK15273 |
PRK15273 |
fimbrial biogenesis outer membrane usher protein; |
14-346 |
9.10e-38 |
|
fimbrial biogenesis outer membrane usher protein;
Pssm-ID: 185176 [Multi-domain] Cd Length: 881 Bit Score: 144.14 E-value: 9.10e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 14 LLLGIEAYAA---EETFDTHFMigGMKDQQVANIRLDDNQP--LPGQYDIDIYVNKQ---------WrgkyeIIVKDNPQ 79
Cdd:PRK15273 1 MLLSASPYSAsgkDIEFNTDFL--DVKNRDNVNIAQFSRKGfiLPGVYLLQIKINGQtlpqefpvnW-----VIPEHDPQ 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 80 --ETCLSREVIKRLGINSDNFAS-------GKQCLTFEQLvQGGSYTWDIGVFRLDFSVPQAWVEELESGYVPPENWERG 150
Cdd:PRK15273 74 gsEVCAEPELVTQLGIKPELAEKlvwithgERQCLAPDSL-KGMDFQADLGHSTLLVNLPQAYMEYSDVDWDPPARWDNG 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 151 INAFYTSYYVS-QYYSDYKASGNSKSTYVRFNSGLNLLGWQLHSD--ASFSKTNNNPGV-------WksNTLYLERGFAQ 220
Cdd:PRK15273 153 IPGIILDYNINnQLRHDQESGSEEQSISGNGTLGANLGAWRLRADwqASYDHRDDDENTstlhdqsW--SRYYAYRALPT 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 221 LLGTLRVGDMYTSSDIFDSVRFRGVRLFRDMQMLPNSKQNFTPRVQGIAQSNALVIIEQNGFVVYQKEVPPGPFAITDLQ 300
Cdd:PRK15273 231 LGAKLTLGESYLQSDVFDSFNYIGASVVSDDQMLPPKLRGYAPEIVGIARSNAKVKVSWQGRVLYETQVPAGPFRIQDLN 310
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 817676246 301 LAGGGAdLDVSVKEADGSVTTYLVPYAAVPNMLQPGVSKYDFAAGR 346
Cdd:PRK15273 311 QSVSGT-LHVTVEEQNGQTQEFDVNTASVPFLTRPGMVRYKMALGR 355
|
|
| PRK15304 |
PRK15304 |
putative fimbrial outer membrane usher protein; Provisional |
7-346 |
1.78e-28 |
|
putative fimbrial outer membrane usher protein; Provisional
Pssm-ID: 237937 [Multi-domain] Cd Length: 801 Bit Score: 116.77 E-value: 1.78e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 7 LASAIVALLLGIEAY-----------AAEETFDTHFMIGGMKDQQVANIRLDDNQPLPGQYDIDIYVNKQWRGKyeIIVK 75
Cdd:PRK15304 2 KKKLLLALYIATAFYcslptttftalAAEVTFDTDILKSRGLDPNIAHYFSRAPRFLPGSHSVMVKINGKKRGS--LAAR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 76 DNPQET-CLSREVIKRLGINSDNFASGKQCLTFEQLVQGGSYTWDIGVFRLDFSVPQawvEELESGYVPPENWERGINAF 154
Cdd:PRK15304 80 FDEEGQlCVDDDFLQAAGLVPLPISAKETCHDLQEDYPSATITPLPNQESLELVVPP---EALDNDLLRLNNVIHGGTAA 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 155 YTSYyvSQYYSDYKASGnSKSTYVR--FNSGLNLLGWQLHSDASFSKTNNNPGVWKSNTlYLERGFAQLLGTLRVGDMYT 232
Cdd:PRK15304 157 LLNY--SLFSSRYEYSG-GDSDYSQasLEAGFNFADWTLRSRQFLTDTDGEFSTDSLYT-YAQHTFTDQKTLMQVGQINV 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 233 SSDIFDSVRFRGVRLFRDMQMLPNSkQNFTprVQGIAQSN-ALVIIEQNGFVVYQKEVPPGPFAITDLQLAGGGADLDVS 311
Cdd:PRK15304 233 NNSLFSGASIYGVQLMPENALQQDG-SGVT--VTGIARTSqARVEIRQSGQLIYSTLVPAGAFTLDDVPVINGNTDLNVT 309
|
330 340 350
....*....|....*....|....*....|....*
gi 817676246 312 VKEADGSVTTYLVPYAAVPNMLQPGVSKYDFAAGR 346
Cdd:PRK15304 310 VVETDGSTSHFTVPASSFNLNELSRPQGLTMAIGR 344
|
|
|