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Conserved domains on  [gi|817676246|ref|WP_046641360|]
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fimbria/pilus outer membrane usher protein, partial [Escherichia coli]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK15217 super family cl29063
fimbrial outer membrane usher protein; Provisional
 1-361 0e+00

fimbrial outer membrane usher protein; Provisional


The actual alignment was detected with superfamily member PRK15217:

Pssm-ID: 185139 [Multi-domain]  Cd Length: 826  Bit Score: 740.06  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246   1 MLRMTPLASAIVALLLGIEAYAAEETFDTHFMIGGMKDQQVANIRLDDNQPLPGQYDIDIYVNKQWRGKYEIIVKDNPQE 80
Cdd:PRK15217   1 MLRMTPLASAIVALLLGIEAYAAEETFDTHFMIGGMKGQKVSNYRLDDNQPLPGQYEIDIYVNKQWRGKYEIIVKDNPQE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246  81 TCLSREVIKRLGINSDNFASGKQCLTFEQLVQGGSYTWDIGVFRLDFSVPQAWVEELESGYVPPENWERGINAFYTSYYV 160
Cdd:PRK15217  81 TCLSRELIKRLGIKSDNFATEKQCITLKQLVQGGSYTWDIGVFRLDLSVPQAYVEELEAGYVPPENWDRGINAFYTSYYA 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 161 SQYYSDYKASGNSKSTYVRFNSGLNLLGWQLHSDASFSKTNNNPGVWKSNTLYLERGFAQLLGTLRVGDMYTSSDIFDSV 240
Cdd:PRK15217 161 SQYYSDYKASGNSKSTYVRFNSGLNLLGWQLHSDASFSKTDNNPGEWKSNTLYLERGFAQLLGTLRVGDMYTSSDIFDSV 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 241 RFRGVRLFRDMQMLPNSKQNFTPRVQGIAQSNALVIIEQNGFVVYQKEVPPGPFAITDLQLAGGGADLDVSVKEADGSVT 320
Cdd:PRK15217 241 RFSGVRLFRDMQMLPNSKQNFTPRVQGIAQSNALVTIEQNGFVVYQKEVPPGPFAIADLQLAGGGADLDVSVKEADGSVT 320

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|.
gi 817676246 321 TYLVPYAAVPNMLQPGVSKYDFAAGRSHIEGASKHSDFVQA 361
Cdd:PRK15217 321 TYLVPYASVPNMLQPGVSKYDFAAGRSHIEGASKQSDFVQA 361
 
Name Accession Description Interval E-value
PRK15217 PRK15217
fimbrial outer membrane usher protein; Provisional
 1-361 0e+00

fimbrial outer membrane usher protein; Provisional


Pssm-ID: 185139 [Multi-domain]  Cd Length: 826  Bit Score: 740.06  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246   1 MLRMTPLASAIVALLLGIEAYAAEETFDTHFMIGGMKDQQVANIRLDDNQPLPGQYDIDIYVNKQWRGKYEIIVKDNPQE 80
Cdd:PRK15217   1 MLRMTPLASAIVALLLGIEAYAAEETFDTHFMIGGMKGQKVSNYRLDDNQPLPGQYEIDIYVNKQWRGKYEIIVKDNPQE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246  81 TCLSREVIKRLGINSDNFASGKQCLTFEQLVQGGSYTWDIGVFRLDFSVPQAWVEELESGYVPPENWERGINAFYTSYYV 160
Cdd:PRK15217  81 TCLSRELIKRLGIKSDNFATEKQCITLKQLVQGGSYTWDIGVFRLDLSVPQAYVEELEAGYVPPENWDRGINAFYTSYYA 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 161 SQYYSDYKASGNSKSTYVRFNSGLNLLGWQLHSDASFSKTNNNPGVWKSNTLYLERGFAQLLGTLRVGDMYTSSDIFDSV 240
Cdd:PRK15217 161 SQYYSDYKASGNSKSTYVRFNSGLNLLGWQLHSDASFSKTDNNPGEWKSNTLYLERGFAQLLGTLRVGDMYTSSDIFDSV 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 241 RFRGVRLFRDMQMLPNSKQNFTPRVQGIAQSNALVIIEQNGFVVYQKEVPPGPFAITDLQLAGGGADLDVSVKEADGSVT 320
Cdd:PRK15217 241 RFSGVRLFRDMQMLPNSKQNFTPRVQGIAQSNALVTIEQNGFVVYQKEVPPGPFAIADLQLAGGGADLDVSVKEADGSVT 320

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|.
gi 817676246 321 TYLVPYAAVPNMLQPGVSKYDFAAGRSHIEGASKHSDFVQA 361
Cdd:PRK15217 321 TYLVPYASVPNMLQPGVSKYDFAAGRSHIEGASKQSDFVQA 361
FimD COG3188
Outer membrane usher protein FimD/PapC [Cell motility, Extracellular structures];
2-361 5.33e-129

Outer membrane usher protein FimD/PapC [Cell motility, Extracellular structures];


Pssm-ID: 442421 [Multi-domain]  Cd Length: 817  Bit Score: 388.84  E-value: 5.33e-129
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246   2 LRMTPLASAIVALLLGIEAYA-AEETFDTHFMIGGMKDQQVANIRLDDNQPLPGQYDIDIYVNKQWRGKYEIIVKDNPQ- 79
Cdd:COG3188    2 SRRRRLALLLLLLLALAAAAAaAAVEFNPAFLDGDDAAAIDLSRFSRGNYVPPGTYYLDVYVNGQPLGRGDITFVADRDd 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246  80 ---ETCLSREVIKRLGINSDNFAS----GKQCLTFeQLVQGGSYTWDIGVFRLDFSVPQAWVEELESGYVPPENWERGIN 152
Cdd:COG3188   82 grlQPCLTPELLEQLGLKLDALPAllaaDGQCVDL-SAIPGASVRFDFATQRLDLSVPQAALPYQARGYVPPSLWDDGIP 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 153 AFYTSYYVSQYYSDYKASGNSKSTYVRFNSGLNLLGWQLHSDASFSKTNNNPGVWKSNTLYLERGFAQLLGTLRVGDMYT 232
Cdd:COG3188  161 ALLLNYDLNASRSRGRSGSASESRYLGLNSGLNLGAWRLRNNSSYSYSSGGGSGWQRLDTYLQRDIPALRSQLTLGDSYT 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 233 SSDIFDSVRFRGVRLFRDMQMLPNSKQNFTPRVQGIAQSNALVIIEQNGFVVYQKEVPPGPFAITDLQLAGGGADLDVSV 312
Cdd:COG3188  241 SSDWFDSVRFRGVQLASDFRMLPDSLRGYAPVVRGIAASNATVTVRQNGYVIYQTTVPPGPFEINDLPPTGGAGDLDVTV 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|
gi 817676246 313 KEADGSVTTYLVPYAAVPNMLQPGVSKYDFAAGRSHIEG-ASKHSDFVQA 361
Cdd:COG3188  321 TEADGREQTFTVPFASVPQLLRPGLSRYSLAAGRYRRNGsFDYGPPFAQG 370
Usher pfam00577
Outer membrane usher protein; In Gram-negative bacteria the biogenesis of fimbriae (or pili) ...
 177-361 1.26e-86

Outer membrane usher protein; In Gram-negative bacteria the biogenesis of fimbriae (or pili) requires a two- component assembly and transport system which is composed of a periplasmic chaperone and an outer membrane protein which has been termed a molecular 'usher'. The usher protein is rather large (from 86 to 100 Kd) and seems to be mainly composed of membrane-spanning beta-sheets, a structure reminiscent of porins. Although the degree of sequence similarity of these proteins is not very high they share a number of characteriztics. One of these is the presence of two pairs of cysteines, the first one located in the N-terminal part and the second at the C-terminal extremity that are probably involved in disulphide bonds. The best conserved region is located in the central part of these proteins.


Pssm-ID: 425762 [Multi-domain]  Cd Length: 549  Bit Score: 271.48  E-value: 1.26e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246  177 YVRFNSGLNLLGWQLHSDASFSKTNNNPGVWKSNTLYLERGFAQLLGTLRVGDMYTSSDIFDSVRFRGVRLFRDMQMLPN 256
Cdd:pfam00577   1 YLNLQSGLNLGAWRLRNDSNWTQSRGNTGKWQNSRTYLQRAIPQLKSRLTLGESYTSSDIFDSFSFRGVQLASDDNMLPD 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246  257 SKQNFTPRVQGIAQSNALVIIEQNGFVVYQKEVPPGPFAITDLQLAGGGADLDVSVKEADGSVTTYLVPYAAVPNMLQPG 336
Cdd:pfam00577  81 SLRGYAPVIRGIARTNARVTIRQNGYVIYQTLVPPGPFEITDLYPTGSSGDLDVTVEEADGSVQTFTVPYSSVPLLLRPG 160

                         170       180
                  ....*....|....*....|....*.
gi 817676246  337 VSKYDFAAGRSHIEGA-SKHSDFVQA 361
Cdd:pfam00577 161 QVRYSLAAGRYRSGNSdQESPFFFQA 186
 
Name Accession Description Interval E-value
PRK15217 PRK15217
fimbrial outer membrane usher protein; Provisional
 1-361 0e+00

fimbrial outer membrane usher protein; Provisional


Pssm-ID: 185139 [Multi-domain]  Cd Length: 826  Bit Score: 740.06  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246   1 MLRMTPLASAIVALLLGIEAYAAEETFDTHFMIGGMKDQQVANIRLDDNQPLPGQYDIDIYVNKQWRGKYEIIVKDNPQE 80
Cdd:PRK15217   1 MLRMTPLASAIVALLLGIEAYAAEETFDTHFMIGGMKGQKVSNYRLDDNQPLPGQYEIDIYVNKQWRGKYEIIVKDNPQE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246  81 TCLSREVIKRLGINSDNFASGKQCLTFEQLVQGGSYTWDIGVFRLDFSVPQAWVEELESGYVPPENWERGINAFYTSYYV 160
Cdd:PRK15217  81 TCLSRELIKRLGIKSDNFATEKQCITLKQLVQGGSYTWDIGVFRLDLSVPQAYVEELEAGYVPPENWDRGINAFYTSYYA 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 161 SQYYSDYKASGNSKSTYVRFNSGLNLLGWQLHSDASFSKTNNNPGVWKSNTLYLERGFAQLLGTLRVGDMYTSSDIFDSV 240
Cdd:PRK15217 161 SQYYSDYKASGNSKSTYVRFNSGLNLLGWQLHSDASFSKTDNNPGEWKSNTLYLERGFAQLLGTLRVGDMYTSSDIFDSV 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 241 RFRGVRLFRDMQMLPNSKQNFTPRVQGIAQSNALVIIEQNGFVVYQKEVPPGPFAITDLQLAGGGADLDVSVKEADGSVT 320
Cdd:PRK15217 241 RFSGVRLFRDMQMLPNSKQNFTPRVQGIAQSNALVTIEQNGFVVYQKEVPPGPFAIADLQLAGGGADLDVSVKEADGSVT 320

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|.
gi 817676246 321 TYLVPYAAVPNMLQPGVSKYDFAAGRSHIEGASKHSDFVQA 361
Cdd:PRK15217 321 TYLVPYASVPNMLQPGVSKYDFAAGRSHIEGASKQSDFVQA 361
FimD COG3188
Outer membrane usher protein FimD/PapC [Cell motility, Extracellular structures];
2-361 5.33e-129

Outer membrane usher protein FimD/PapC [Cell motility, Extracellular structures];


Pssm-ID: 442421 [Multi-domain]  Cd Length: 817  Bit Score: 388.84  E-value: 5.33e-129
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246   2 LRMTPLASAIVALLLGIEAYA-AEETFDTHFMIGGMKDQQVANIRLDDNQPLPGQYDIDIYVNKQWRGKYEIIVKDNPQ- 79
Cdd:COG3188    2 SRRRRLALLLLLLLALAAAAAaAAVEFNPAFLDGDDAAAIDLSRFSRGNYVPPGTYYLDVYVNGQPLGRGDITFVADRDd 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246  80 ---ETCLSREVIKRLGINSDNFAS----GKQCLTFeQLVQGGSYTWDIGVFRLDFSVPQAWVEELESGYVPPENWERGIN 152
Cdd:COG3188   82 grlQPCLTPELLEQLGLKLDALPAllaaDGQCVDL-SAIPGASVRFDFATQRLDLSVPQAALPYQARGYVPPSLWDDGIP 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 153 AFYTSYYVSQYYSDYKASGNSKSTYVRFNSGLNLLGWQLHSDASFSKTNNNPGVWKSNTLYLERGFAQLLGTLRVGDMYT 232
Cdd:COG3188  161 ALLLNYDLNASRSRGRSGSASESRYLGLNSGLNLGAWRLRNNSSYSYSSGGGSGWQRLDTYLQRDIPALRSQLTLGDSYT 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 233 SSDIFDSVRFRGVRLFRDMQMLPNSKQNFTPRVQGIAQSNALVIIEQNGFVVYQKEVPPGPFAITDLQLAGGGADLDVSV 312
Cdd:COG3188  241 SSDWFDSVRFRGVQLASDFRMLPDSLRGYAPVVRGIAASNATVTVRQNGYVIYQTTVPPGPFEINDLPPTGGAGDLDVTV 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|
gi 817676246 313 KEADGSVTTYLVPYAAVPNMLQPGVSKYDFAAGRSHIEG-ASKHSDFVQA 361
Cdd:COG3188  321 TEADGREQTFTVPFASVPQLLRPGLSRYSLAAGRYRRNGsFDYGPPFAQG 370
Usher pfam00577
Outer membrane usher protein; In Gram-negative bacteria the biogenesis of fimbriae (or pili) ...
 177-361 1.26e-86

Outer membrane usher protein; In Gram-negative bacteria the biogenesis of fimbriae (or pili) requires a two- component assembly and transport system which is composed of a periplasmic chaperone and an outer membrane protein which has been termed a molecular 'usher'. The usher protein is rather large (from 86 to 100 Kd) and seems to be mainly composed of membrane-spanning beta-sheets, a structure reminiscent of porins. Although the degree of sequence similarity of these proteins is not very high they share a number of characteriztics. One of these is the presence of two pairs of cysteines, the first one located in the N-terminal part and the second at the C-terminal extremity that are probably involved in disulphide bonds. The best conserved region is located in the central part of these proteins.


Pssm-ID: 425762 [Multi-domain]  Cd Length: 549  Bit Score: 271.48  E-value: 1.26e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246  177 YVRFNSGLNLLGWQLHSDASFSKTNNNPGVWKSNTLYLERGFAQLLGTLRVGDMYTSSDIFDSVRFRGVRLFRDMQMLPN 256
Cdd:pfam00577   1 YLNLQSGLNLGAWRLRNDSNWTQSRGNTGKWQNSRTYLQRAIPQLKSRLTLGESYTSSDIFDSFSFRGVQLASDDNMLPD 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246  257 SKQNFTPRVQGIAQSNALVIIEQNGFVVYQKEVPPGPFAITDLQLAGGGADLDVSVKEADGSVTTYLVPYAAVPNMLQPG 336
Cdd:pfam00577  81 SLRGYAPVIRGIARTNARVTIRQNGYVIYQTLVPPGPFEITDLYPTGSSGDLDVTVEEADGSVQTFTVPYSSVPLLLRPG 160

                         170       180
                  ....*....|....*....|....*.
gi 817676246  337 VSKYDFAAGRSHIEGA-SKHSDFVQA 361
Cdd:pfam00577 161 QVRYSLAAGRYRSGNSdQESPFFFQA 186
PRK09828 PRK09828
putative fimbrial outer membrane usher protein; Provisional
 13-345 1.51e-80

putative fimbrial outer membrane usher protein; Provisional


Pssm-ID: 182098 [Multi-domain]  Cd Length: 865  Bit Score: 263.15  E-value: 1.51e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246  13 ALLLGIEAYAAEET-FDTHFMIGgmkdQQVANIRL----DDNQPLPGQYDIDIYVNKQWRGKYEIIVKDNPQ---ETCLS 84
Cdd:PRK09828  21 ALLYSNSAACAELVeYDHTFLMG----QGASNIDLsrysEGNPTLPGTYDVSVYVNDQPISSQSIPFIDIGKknaQACIT 96

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246  85 REVIKRLGINSDNFASGKQ-----------CLTFEQLVQGGSYTWDIGVFRLDFSVPQAWVEELESGYVPPENWERGINA 153
Cdd:PRK09828  97 LKNLLQFHIKSPDINNEKAillarddelgdCLNLTKIIPQASVRYDVSDQRLDIDVPQAWVMKNYQGYVDPSLWENGINA 176

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 154 FYTSYYVSQYYSDYKaSGNSKSTYVRFNSGLNLLGWQLHSDASFSKTNNNPGVWKSNTLYLERGFAQLLGTLRVGDMYTS 233
Cdd:PRK09828 177 AMLSYNLNGYHSESP-GRTNDSIYAAFNGGINLGAWRLRARGNYNWMTDSGSDYDFQNRYLQRDIAALRSQLIIGESYTT 255

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 234 SDIFDSVRFRGVRLFRDMQMLPNSKQNFTPRVQGIAQSNALVIIEQNGFVVYQKEVPPGPFAITDLQLAGGGADLDVSVK 313
Cdd:PRK09828 256 GETFDSVSIRGIRLYSDSRMLPPGLASYAPIIRGVANSNAKVTITQSGYKIYETTVPPGAFVIDDLSPSGYGSDLIVTIE 335

                        330       340       350
                 ....*....|....*....|....*....|..
gi 817676246 314 EADGSVTTYLVPYAAVPNMLQPGVSKYDFAAG 345
Cdd:PRK09828 336 EADGSKRTFSQPFSSVVQMLRPGVGRWDISAG 367
PRK15193 PRK15193
outer membrane usher protein; Provisional
 3-361 1.97e-74

outer membrane usher protein; Provisional


Pssm-ID: 237919 [Multi-domain]  Cd Length: 876  Bit Score: 246.74  E-value: 1.97e-74
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246   3 RMTPLASAIvALLLGIEAYAAEETFDTHFMIGGmkDQQVANI-RLDDN-QPLPGQYDIDIYVNKQWRGKYEI---IVKDN 77
Cdd:PRK15193  16 GVPSLALGI-VVFVSAGNAQAETYFNPAFLSDD--PSMVADLsRFEKGaKIAAGVYRVDIVLNNTFVATRDVnfvEIKTT 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246  78 PQET---------CLSREVIKRLGINSDNFASGKQ-----CLTFEQLVQGGSYTWDIGVFRLDFSVPQAWVEELESGYVP 143
Cdd:PRK15193  93 GKSAptddkglaaCLTTESLDAMGVNTDAFPAFKQlakgaCPPLASIIPDASVTFDFNKQRLDISVPQIAIKSSARGYIP 172

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 144 PENWERGINAFYTSYYVSQYYS-DYKASGNSKSTY-VRFNSGLNLLGWQLHSDASFSKT---NNNPGVWKSNTLYLERGF 218
Cdd:PRK15193 173 PERWDEGINALLLNYSFSGANSiHSSADSDSGDSYfLGLNSGVNLGPWRLRNYSTWNRSsgqTAEDSDWQHISSYLERAV 252

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 219 AQLLGTLRVGDMYTSSDIFDSVRFRGVRLFRDMQMLPNSKQNFTPRVQGIAQSNALVIIEQNGFVVYQKEVPPGPFAITD 298
Cdd:PRK15193 253 IPLKGELTAGDSYTAGDFFDSVSFRGVQLASDDNMLPDSLKGFAPTVRGIAKSNAQVTIKQNGYTIYQTYVSPGAFEISD 332

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 817676246 299 LQLAGGGADLDVSVKEADGSVTTYLVPYAAVPNMLQPGVSKYDFAAGRSHIEGASKH-SDFVQA 361
Cdd:PRK15193 333 LYPTSSSGDLLVEVKEADGSINSYSVPYSAVPLLQREGRIKYAVTLAKYRTNSNEQQeVKFAQA 396
PRK15298 PRK15298
fimbrial outer membrane usher protein;
47-361 1.47e-60

fimbrial outer membrane usher protein;


Pssm-ID: 185198 [Multi-domain]  Cd Length: 848  Bit Score: 208.84  E-value: 1.47e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246  47 DDNQPLPGQYDIDIYVNKQWRGKYEI-----IVKDNPQ--ETCLSREVIKRLGINSDNFA---SGKQCLTFeQLVQGGSY 116
Cdd:PRK15298  57 NDKSQLPGTYYVTININKTEIGARNVdfqlaTLSDGQQalQGCLRLQELKDNGVKTDLFPtleSEKGCVDL-SVIPGASQ 135

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 117 TWDIGVFRLDFSVPQAWVEELESGYVPPENWERGINAFYTSYYVSQY--YSDYKASGNSKSTYVRFNSGLNLLGWQLHSD 194
Cdd:PRK15298 136 RFDFQQQALSVSIPQLYIANNARGYVPPEKWQEGITALMLNYSFSGYkeYGSSEDSDDAESKYLALQPGFNLGPWRFRNY 215

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 195 ASFSKTNNNPGVWKSNTLYLERGFAQLLGTLRVGDMYTSSDIFDSVRFRGVRLFRDMQMLPNSKQNFTPRVQGIAQSNAL 274
Cdd:PRK15298 216 SNWSSNNGESGSWNSVYNYLQRDIIALKSQFTAGDSNTPSDVFDSVPFRGLQLTSDDQMQPNSQRGYAPTIRGIARSNAQ 295

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 275 VIIEQNGFVVYQKEVPPGPFAITDLQLAGGGADLDVSVKEADGSVTTYLVPYAAVPNMLQPGVSKYDFAAGRSHIEGASK 354
Cdd:PRK15298 296 VIVRQNGYIAYQTAVSPGEFEINDMFPTGSNGDYDVTVKEADGSEQHFIVPYSSLPILQRTGRAKYSVTVGKYRDYNNHT 375


                 ....*..
gi 817676246 355 HSDFVQA 361
Cdd:PRK15298 376 LDDFGQA 382
PRK15198 PRK15198
outer membrane usher protein FimD;
3-345 3.96e-60

outer membrane usher protein FimD;


Pssm-ID: 185120 [Multi-domain]  Cd Length: 860  Bit Score: 207.46  E-value: 3.96e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246   3 RMTPLASAIVALLLGIEAYAaEETFDTHFMIGgmKDQQVANI-RLDD-NQPLPGQYDIDIYVNKQWRGKYEIIVKDNPQE 80
Cdd:PRK15198   7 CLAGVALSSLAILPPFLSYA-ESYFNPAFLSE--DTASVADLsRFERgNHQPPGVYRVDIWRNDEFIGTQDIRFESTTVN 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246  81 T---------CLSREVIKRLGINSDNF-ASGKQ----CLTFEQLVQGGSYTWDIGVFRLDFSVPQAWVEELESGYVPPEN 146
Cdd:PRK15198  84 TgdksgglmpCFTQELLERLGVNSSAFpELAQQqdnkCINLLKAIPGAEIAFDFASMRLNISLPQIALLNSARGYIPPEE 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 147 WERGINAFYTSYYvsqyYSDYKASGNSkSTYVRFNSGLNLLGWQLHSDASFSKTNNN---PGVWKSNTLYLERGFAQLLG 223
Cdd:PRK15198 164 WDEGIPAALLNYS----FTGNRGNDND-SYFLSLLSGLNYGPWRLRNNGAWNYFRGNgyhSEQWNNIGTWVQRAIIPLKS 238

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 224 TLRVGDMYTSSDIFDSVRFRGVRLFRDMQMLPNSKQNFTPRVQGIAQSNALVIIEQNGFVVYQKEVPPGPFAITDLQLAG 303
Cdd:PRK15198 239 ELVMGDSNTGNDVFDSVGFRGARLYSSDNMYPDSLQGYAPTVRGIARTAAKLTIRQNGYVIYQSYVSPGAFAITDLNPTS 318

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|..
gi 817676246 304 GGADLDVSVKEADGSVTTYLVPYAAVPNMLQPGVSKYDFAAG 345
Cdd:PRK15198 319 SSGDLDVTVDEKDGNQQRYTVPYSTVPLLQREGRVKYDLVAG 360
PRK15248 PRK15248
fimbrial outer membrane usher protein;
1-346 4.77e-58

fimbrial outer membrane usher protein;


Pssm-ID: 185160 [Multi-domain]  Cd Length: 853  Bit Score: 201.61  E-value: 4.77e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246   1 MLRMTPLASAIVALLLGI----EAYAAEETFDTHFMIGGMKDQQVAniRLDDNQPLPGQYDIDIYVNKQWRGKYEII--- 73
Cdd:PRK15248   1 MSPTINLNRKSLALLIAIvcsgSAQGEEYYFDPALLQGATYGQNIA--RFNEQQTPSGDYLADVYVNGTLVTSSTNIrfn 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246  74 --VKDNPQETCLSREVIKRLGINS-DNFASGKQCLTFEQLVQGGSYTWDIGVFRLDFSVPQAWVEELESGYVPPENWERG 150
Cdd:PRK15248  79 avKEGQQTEPCLPLSVMKAAQIKSlPATDAATECRPLREWVPHAGWQFDSATLRLLLTIPMTELTHKPRGYISPSEWDSG 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 151 INAFY----TSYY-----VSQYYSDYKASGnskstyvrFNSGLNLLGWQL--HSDASFSKTNNNPGVWKSNTL--YLERG 217
Cdd:PRK15248 159 ALALFlrhnTNWThtentDSHYRYQYLWSG--------LNMGVNLGLWQVrhQSNLRYANSNQSGSAWRYNSVrtWVQRP 230

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 218 FAQLLGTLRVGDMYTSSDIFDSVRFRGVRLFRDMQMLPNSKQNFTPRVQGIAQSNALVIIEQNGFVVYQKEVPPGPFAIT 297
Cdd:PRK15248 231 VASINSILSLGDSYTDSSLFGSLSFNGIKLVTDERMRPQGKRGYAPEVRGVAASSAHVVVKQLGKVIYETNVPPGPFYID 310

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*....
gi 817676246 298 DLQLAGGGADLDVSVKEADGSVTTYLVPYAAVPNMLQPGVSKYDFAAGR 346
Cdd:PRK15248 311 DLYNTRYQGDLEVEVIEASGKTSRFTVPYSSVPDSVRPGNWHYSLAFGR 359
PRK15207 PRK15207
outer membrane usher protein LpfC;
6-345 4.24e-57

outer membrane usher protein LpfC;


Pssm-ID: 185129 [Multi-domain]  Cd Length: 842  Bit Score: 198.98  E-value: 4.24e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246   6 PLASAIVALLLGIEAYAAEETFDTHFM--IGGMkDQQVANIRLDDN--QPLPGQYDIDIYVNKQWRGKYEIIVKDNPQET 81
Cdd:PRK15207  14 HFSFSLLALTIASTLPAYAGKFNPKFLedVQGI-DQHVDLSMYESPvgQQLPGKYRVSVFVNEEKMESRTLEFKAATEAQ 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246  82 ----------CLSREVIKRLGINSDNF-----ASGKQCLTFEQLVQGGSYTWDIGVFRLDFSVPQAWVEELESGYVPPEN 146
Cdd:PRK15207  93 rkamgeslvpCLSRVQLEEMGVRVDSFpalkmAPPEACVAFDEIIPQATSHFDFNTQTLHLSFPQAAMMQTARGTVPESR 172

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 147 WERGINAFYTSYYVSQYYSDYKASG-----NSKSTYVRFNSGLNLLGWQLHSDASFSKTNNNpGVWKSNTLYLERGFAQL 221
Cdd:PRK15207 173 WDEGIPALLLDYSFSGSNGSYDGTGssssyTSDSYYLNLRSGLNLGAWRLRNYSTWNRTDGK-NQWDNIGTSLSRAIIPL 251

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 222 LGTLRVGDMYTSSDIFDSVRFRGVRLFRDMQMLPNSKQNFTPRVQGIAQSNALVIIEQNGFVVYQKEVPPGPFAITDLQL 301
Cdd:PRK15207 252 KSQLTLGDTATAGDIFDSVQMRGALLASDEEMLPDSQRGFAPVVRGIAKSNAEVSIEQNGYVIYRTFVQPGAFEINDLYP 331

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....
gi 817676246 302 AGGGADLDVSVKEADGSVTTYLVPYAAVPNMLQPGVSKYDFAAG 345
Cdd:PRK15207 332 TSNSGDLTVIIKEADGSEQRFIQPFSSVAIFQREGHLKYSLAAG 375
PRK15294 PRK15294
fimbrial outer membrane usher protein;
54-347 1.37e-55

fimbrial outer membrane usher protein;


Pssm-ID: 185194 [Multi-domain]  Cd Length: 845  Bit Score: 194.96  E-value: 1.37e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246  54 GQYDIDIYVNKQWRGKYEIIVKDNPQ-------ETCLSREVIKRLGINSDNFASGKQ----CLTFeQLVQGGSYTWDIGV 122
Cdd:PRK15294  60 GTYNVDIYINNTSVETKNIAFKNKKSadnklslQPCLSVEQLKQWGVKTENFPELKNdpngCTDL-SLLAGAVAKFNVIG 138

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 123 FRLDFSVPQAWVEELESGYVPPENWERGINAFYTSY-YVSQYYSDYKASGNSKSTYVRFNSGLNLLGWQLHSDASFSKTN 201
Cdd:PRK15294 139 NRLDLAIPQIALIADPREFVPTSEWDEGINAFLLNYsFTGSQDHDIDENRTENSEYANLRPGINIGAWRFRNYSTWNHDS 218

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 202 NNPGVWKSNTLYLERGFAQLLGTLRVGDMYTSSDIFDSVRFRGVRLFRDMQMLPNSKQNFTPRVQGIAQSNALVIIEQNG 281
Cdd:PRK15294 219 DGQNSWDSAYTYVSRDIEFLKGQLIAGENNTPADVFDSISFKGVQISSDDDMLPDSMKGFAPVIRGVAKSSAQVTVEQNG 298

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 817676246 282 FVVYQKEVPPGPFAITDLQLAGGGADLDVSVKEADGSVTTYLVPYAAVPNMLQPGVSKYDFAAGRS 347
Cdd:PRK15294 299 YTIYKTNVPAGPFAINDLYPTGGSGDLYVTIKESDGSEQHFIVPYASVPVLQREGHLKYDLTVGRT 364
PRK15213 PRK15213
outer membrane usher protein PefC;
7-347 1.96e-51

outer membrane usher protein PefC;


Pssm-ID: 237926 [Multi-domain]  Cd Length: 797  Bit Score: 182.64  E-value: 1.96e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246   7 LASAIVALLLGIEAYAAEEtFDTHFMIGGMKDQ-QVANirLDDNQPlPGQYDIDIYVNKQWRGKYEIIVkdNPQET---C 82
Cdd:PRK15213  13 LALAIFTHLGFASAVAGEE-LNMSFIQGGGGIPpEVLA--SNGDYP-PGRYLVDVIFNGKKIGKAILSI--TPQEAealC 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246  83 LSREVIKRLGI--NSDNFASG----KQC--LTFEQLVQggsYTWDIGVFRLDFSVPQA-WVEELESGyvppeNWERGINA 153
Cdd:PRK15213  87 LSPEWLKKAGIpvSLEYYRSGydaaRQCyvLSKAPSVQ---VDFDYSTQSLTLSIPQAgLVKKPEPV-----EWDYGVPA 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 154 FYTSYYVsqYYSdyKASGNSKSTYVRFNSGLNLLGWQLHSDASFSKTNNNPGVWKSNTLYLERGFAQLLGTLRVGDMYTS 233
Cdd:PRK15213 159 FRLNYSA--NAS--KTSRQNTSAYGNADLKANLGRWVLSSRASASRGAGGSNEFTTNDFTLTTAIKSLQGDLLVGKTQTG 234

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 234 SDIFDSVRFRGVRLFRDMQMLPNSKQNFTPRVQGIAQSNALVIIEQNGFVVYQKEVPPGPFAITDLQLAGGGaDLDVSVK 313
Cdd:PRK15213 235 NSLLGSFGFYGASLRSNNDMLPWENRGYAPVISGIANGPSRVTISQNGYTLYSEVVPAGPFQLDDVPLVGSG-DLTVTVE 313

                        330       340       350
                 ....*....|....*....|....*....|....
gi 817676246 314 EADGSVTTYLVPYAAVPNMLQPGVSKYDFAAGRS 347
Cdd:PRK15213 314 EEDGHKTTQVFPVAVLPGLLRPGEHEYNVAAGLK 347
PRK15223 PRK15223
fimbrial biogenesis outer membrane usher protein;
53-361 1.81e-50

fimbrial biogenesis outer membrane usher protein;


Pssm-ID: 185145 [Multi-domain]  Cd Length: 836  Bit Score: 180.59  E-value: 1.81e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246  53 PGQYDIDIYVNKQWRGKYEII--VKDNPQET-----CLSREVIKRLGINSDNFA-------SGKQCLTFEQLVQGgSYTW 118
Cdd:PRK15223  50 PGTYRVDVMVNGKRVDTRDVVfkLEKDGQGTpflapCLTVSQLSRYGVKTEDYPqlwkaakTPDECADLTAIPQA-KAVL 128

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 119 DIGVFRLDFSVPQAWVEELESGYVPPENWERGINAFYTSYYVSQYYSDYKA--SGNSKSTYVRFNSGLNLLGWQLHSDAS 196
Cdd:PRK15223 129 DINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMdmERRDNSSWVQLQPGINIGAWRVRNATS 208

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 197 FSKTNNNPGVWKSNTLYLERGFAQLLGTLRVGDMYTSSDIFDSVRFRGVRLFRDMQMLPNSKQNFTPRVQGIAQSNALVI 276
Cdd:PRK15223 209 WQRSSQLSGKWQAAYTYAERGLYSLKSRLTLGQKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVE 288

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 277 IEQNGFVVYQKEVPPGPFAITDLQLAGGGADLDVSVKEADGSVTTYLVPYAAVPNMLQPGVSKYDFAAGR-SHIEGASKH 355
Cdd:PRK15223 289 VKQNGYTIYNTTVAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRyRSSDSATDK 368


                 ....*.
gi 817676246 356 SDFVQA 361
Cdd:PRK15223 369 AQIAQA 374
PRK15255 PRK15255
fimbrial outer membrane usher protein StdB; Provisional
 53-356 7.57e-49

fimbrial outer membrane usher protein StdB; Provisional


Pssm-ID: 185167 [Multi-domain]  Cd Length: 829  Bit Score: 175.72  E-value: 7.57e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246  53 PGQYDIDIYVNKQ-WRGKYEI----IVKDNPQETCLSREVIKRLGINsDNFASG---------KQCLTFEQLVQGGSYTW 118
Cdd:PRK15255  50 PGNYILDIWLNDQpVREQYPVrvvpVAGRDAAVICVTTDMVAMLGLK-DKIIHGlkpvtgipdGQCLELRSADSQVRYSA 128

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 119 DIGvfRLDFSVPQAWVEELESGYVPPENWERGINAFYTSY--YVSQYYSDYKASGNSKSTYvrFNSGLNLLGWQLHSDAS 196
Cdd:PRK15255 129 ENQ--RLTFIIPQAWMRYQDPDWVPPSRWSDGVTAGLLDYslMVNRYMPQQGETSTSYSLY--GTAGFNLGAWRLRSDYQ 204

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 197 FSKTNNNPGVWKSN----TLYLERGFAQLLGTLRVGDMYTSSDIFDSVRFRGVRLFRDMQMLPNSKQNFTPRVQGIAQSN 272
Cdd:PRK15255 205 YSRFDSGQGASQSDfylpQTYLFRALPALRSKLTLGQTYLSSAIFDSFRFAGLTLASDERMLPPSLQGYAPKISGIANSN 284

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 273 ALVIIEQNGFVVYQKEVPPGPFAITDLQLAGGGaDLDVSVKEADGSVTTYLVPYAAVPNMLQPGVSKYDFAAGRSHIEGA 352
Cdd:PRK15255 285 AQVTVSQNGRILYQTRVSPGPFELPDLSQNISG-NLDVSVRESDGSVRTWQVNTASVPFMARQGQVRYKVAAGRPLYGGT 363


                 ....
gi 817676246 353 SKHS 356
Cdd:PRK15255 364 HNNS 367
PRK15235 PRK15235
outer membrane fimbrial usher protein SefC; Provisional
 50-346 4.84e-46

outer membrane fimbrial usher protein SefC; Provisional


Pssm-ID: 185150 [Multi-domain]  Cd Length: 814  Bit Score: 167.98  E-value: 4.84e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246  50 QPLPGQYDIDIYVNKQWRGKYEIIVKDNPQ--ETCLSREVIKRLGINSDNFA----SGKQCLTFEQlvQGGSYTWDIGVF 123
Cdd:PRK15235  46 ETLPGNYVVDVYLNNQLKETTELYFKSMTQtlEPCLTKEKLIKYGIAIQELHglqfDNEQCVLLEH--SPLKYTYNAANQ 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 124 RLDFSVPQAWVEELESGYVPPENWERGINAFYTSYYVSQYYSDYkasGNSKSTYVRFNSGLNLLGWQLHSDASFSKTNNN 203
Cdd:PRK15235 124 SLLLNAPSKILSPIDSEIADENIWDDGINAFLLNYRANYLHSKV---GGEDSYFGQIQPGFNFGPWRLRNLSSWQNLSSE 200

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 204 PGvWKSNTLYLERGFAQLLGTLRVGDMYTSSDIFDSVRFRGVRLFRDMQMLPNSKQNFTPRVQGIAQSNALVIIEQNGFV 283
Cdd:PRK15235 201 KK-FESAYIYAERGLKKIKSKLTVGDKYTSADLFDSVPFRGFSLNKDESMIPFSQRTYYPTIRGIAKTNATVEVRQNGYL 279

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 817676246 284 VYQKEVPPGPFAITDLQLAGGGAD---LDVSVKEADGSVTTYLVPYAAVPNMLQPGVSKYDFAAGR 346
Cdd:PRK15235 280 IYSTSVPPGQFEIGREQIADLGVGvgvLDVSIYEKNGQVQNYTVPYSTPVLSLPDGYSKYSVTIGR 345
PapC_N pfam13954
PapC N-terminal domain; The PapC N-terminal domain is a structural domain found at the ...
 26-162 4.58e-42

PapC N-terminal domain; The PapC N-terminal domain is a structural domain found at the N-terminus of the E. coli PapC protein. Pili are assembled using the chaperone usher system. In E.coli this is composed of the chaperone PapD and the usher PapC. This domain represents the N-terminal domain from PapC and its homologs. This domain is involved in substrate binding.


Pssm-ID: 433603 [Multi-domain]  Cd Length: 146  Bit Score: 143.52  E-value: 4.58e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246   26 TFDTHFMIGGmkDQQVANI-RLD-DNQPLPGQYDIDIYVNKQWRGKYEIIVKDNPQ----ETCLSREVIKRLGINSDNFA 99
Cdd:pfam13954   1 EFNPDFLDGS--GAAGVDLsRFSrGNYVLPGTYRVDVYVNGRWIGRQDVRFVADPGdgglEPCLTPELLEQLGVKTDKLP 78

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 817676246  100 SGKQ-----CLTFEQLVQGGSYTWDIGVFRLDFSVPQAWVEELESGYVPPENWERGINAFYTSYYVSQ 162
Cdd:pfam13954  79 ALADaqlgaCVDLAALIPGASARFDFAQQRLDLSIPQAYLRRSARGYVPPSLWDDGIPAALLNYNANA 146
PRK15284 PRK15284
putative fimbrial outer membrane usher protein StfC; Provisional
 2-351 8.19e-41

putative fimbrial outer membrane usher protein StfC; Provisional


Pssm-ID: 185184 [Multi-domain]  Cd Length: 881  Bit Score: 153.10  E-value: 8.19e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246   2 LRMTPLASAIVALLLGIEAYAAEE-TFDTHFMigGMKDQQVANIRLDDNQP--LPGQYDIDIYVNKQ-WRGKYEI---IV 74
Cdd:PRK15284   9 LRILAWCIALAMSGGYVNAWAEDDiQFDSRFL--ELKGDTKIDLKRFSSKGyvEPGKYNLQVQLNKQpLAEEYDIywyAS 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246  75 KDNPQET--CLSREVIKRLGINSD-----NFASGKQCLTFEQLvQGGSYTWDIGVFRLDFSVPQAWVEELESGYVPPENW 147
Cdd:PRK15284  87 ENDPSKTyaCLTPELVAQLGLKEDiaknlQWIHDGKCLKPGQL-EGMEIKADLSQSALVISLPQAYLEYTDPDWDPPSRW 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 148 ERGINAFYTSYYV-SQYYSDYKASGNSKSTYVRFNSGLNLLGWQLHSD--ASFSKTNNNPGV-----------WKSNTLY 213
Cdd:PRK15284 166 DDGIPGLIADYSInAQTRHEENGGDDSNDISGNGTVGVNLGAWRLRADwqTNYQHTRSNDDDdefsgsstqknWDWSRYY 245

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 214 LERGFAQLLGTLRVGDMYTSSDIFDSVRFRGVRLFRDMQMLPNSKQNFTPRVQGIAQSNALVIIEQNGFVVYQKEVPPGP 293
Cdd:PRK15284 246 AWRALPSLKAKLALGEDYLNSDIFDGFNYVGGSVSTDDQMLPPNLRGYAPDISGVAHTTAKVTVSQMGRVIYETQVPAGP 325

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 817676246 294 FAITDLQLAGGGaDLDVSVKEADGSVTTYLVPYAAVPNMLQPGVSKYDFAAGRS-----HIEG 351
Cdd:PRK15284 326 FRIQDIGDSVSG-TLHVRIEEQNGQVQEYDVSTASMPFLTRPGQVRYKLMMGRPqdwghHVEG 387
PRK15273 PRK15273
fimbrial biogenesis outer membrane usher protein;
14-346 9.10e-38

fimbrial biogenesis outer membrane usher protein;


Pssm-ID: 185176 [Multi-domain]  Cd Length: 881  Bit Score: 144.14  E-value: 9.10e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246  14 LLLGIEAYAA---EETFDTHFMigGMKDQQVANIRLDDNQP--LPGQYDIDIYVNKQ---------WrgkyeIIVKDNPQ 79
Cdd:PRK15273   1 MLLSASPYSAsgkDIEFNTDFL--DVKNRDNVNIAQFSRKGfiLPGVYLLQIKINGQtlpqefpvnW-----VIPEHDPQ 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246  80 --ETCLSREVIKRLGINSDNFAS-------GKQCLTFEQLvQGGSYTWDIGVFRLDFSVPQAWVEELESGYVPPENWERG 150
Cdd:PRK15273  74 gsEVCAEPELVTQLGIKPELAEKlvwithgERQCLAPDSL-KGMDFQADLGHSTLLVNLPQAYMEYSDVDWDPPARWDNG 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 151 INAFYTSYYVS-QYYSDYKASGNSKSTYVRFNSGLNLLGWQLHSD--ASFSKTNNNPGV-------WksNTLYLERGFAQ 220
Cdd:PRK15273 153 IPGIILDYNINnQLRHDQESGSEEQSISGNGTLGANLGAWRLRADwqASYDHRDDDENTstlhdqsW--SRYYAYRALPT 230

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 221 LLGTLRVGDMYTSSDIFDSVRFRGVRLFRDMQMLPNSKQNFTPRVQGIAQSNALVIIEQNGFVVYQKEVPPGPFAITDLQ 300
Cdd:PRK15273 231 LGAKLTLGESYLQSDVFDSFNYIGASVVSDDQMLPPKLRGYAPEIVGIARSNAKVKVSWQGRVLYETQVPAGPFRIQDLN 310

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*.
gi 817676246 301 LAGGGAdLDVSVKEADGSVTTYLVPYAAVPNMLQPGVSKYDFAAGR 346
Cdd:PRK15273 311 QSVSGT-LHVTVEEQNGQTQEFDVNTASVPFLTRPGMVRYKMALGR 355
PRK15304 PRK15304
putative fimbrial outer membrane usher protein; Provisional
 7-346 1.78e-28

putative fimbrial outer membrane usher protein; Provisional


Pssm-ID: 237937 [Multi-domain]  Cd Length: 801  Bit Score: 116.77  E-value: 1.78e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246   7 LASAIVALLLGIEAY-----------AAEETFDTHFMIGGMKDQQVANIRLDDNQPLPGQYDIDIYVNKQWRGKyeIIVK 75
Cdd:PRK15304   2 KKKLLLALYIATAFYcslptttftalAAEVTFDTDILKSRGLDPNIAHYFSRAPRFLPGSHSVMVKINGKKRGS--LAAR 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246  76 DNPQET-CLSREVIKRLGINSDNFASGKQCLTFEQLVQGGSYTWDIGVFRLDFSVPQawvEELESGYVPPENWERGINAF 154
Cdd:PRK15304  80 FDEEGQlCVDDDFLQAAGLVPLPISAKETCHDLQEDYPSATITPLPNQESLELVVPP---EALDNDLLRLNNVIHGGTAA 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 155 YTSYyvSQYYSDYKASGnSKSTYVR--FNSGLNLLGWQLHSDASFSKTNNNPGVWKSNTlYLERGFAQLLGTLRVGDMYT 232
Cdd:PRK15304 157 LLNY--SLFSSRYEYSG-GDSDYSQasLEAGFNFADWTLRSRQFLTDTDGEFSTDSLYT-YAQHTFTDQKTLMQVGQINV 232

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817676246 233 SSDIFDSVRFRGVRLFRDMQMLPNSkQNFTprVQGIAQSN-ALVIIEQNGFVVYQKEVPPGPFAITDLQLAGGGADLDVS 311
Cdd:PRK15304 233 NNSLFSGASIYGVQLMPENALQQDG-SGVT--VTGIARTSqARVEIRQSGQLIYSTLVPAGAFTLDDVPVINGNTDLNVT 309

                        330       340       350
                 ....*....|....*....|....*....|....*
gi 817676246 312 VKEADGSVTTYLVPYAAVPNMLQPGVSKYDFAAGR 346
Cdd:PRK15304 310 VVETDGSTSHFTVPASSFNLNELSRPQGLTMAIGR 344
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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