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Conserved domains on  [gi|817638894|gb|AKG06008|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Saudareos iris]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 5.53e-153

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 433.48  E-value: 5.53e-153
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894   1 MSPLTSLISTMSLLLGTTITITSNHWMMAWTGLELNTLAIIPLISKSHHPRAIEASTKYFLTQAAASALVLFSSVTNAQH 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894  81 TGQWDITQLTYPPSQLLLTTAIAIKLGLTPFHFWFPEVLQGSSITTALLLSTLMKLPPTAILLLTSHSTNPTLLTTMSIM 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894 161 SIALGGWMGLNQTQTRKILAFSSISHLGWMTIIIIYNPKLTLLSFYTYILMTTAIFLTLNTTNTLKLPTLMTSWTKTPML 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894 241 NTTLFLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIISMLSLLGLFFYVRLAYCSTITLPPNPSNKMKQWSPKKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 817638894 321 VNILIPTLTSLSISLLPLSPMILATI 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 5.53e-153

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 433.48  E-value: 5.53e-153
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894   1 MSPLTSLISTMSLLLGTTITITSNHWMMAWTGLELNTLAIIPLISKSHHPRAIEASTKYFLTQAAASALVLFSSVTNAQH 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894  81 TGQWDITQLTYPPSQLLLTTAIAIKLGLTPFHFWFPEVLQGSSITTALLLSTLMKLPPTAILLLTSHSTNPTLLTTMSIM 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894 161 SIALGGWMGLNQTQTRKILAFSSISHLGWMTIIIIYNPKLTLLSFYTYILMTTAIFLTLNTTNTLKLPTLMTSWTKTPML 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894 241 NTTLFLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIISMLSLLGLFFYVRLAYCSTITLPPNPSNKMKQWSPKKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 817638894 321 VNILIPTLTSLSISLLPLSPMILATI 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-298 3.78e-26

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 108.28  E-value: 3.78e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894  14 LLGTTITITSNHWMMAWTGLELNTLAIIPLIS-KSHHPRAIEASTKYFLTQAAASALVLF--SSVTNAqhTGQWDITQL- 89
Cdd:COG1007  112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgiSLLYGA--TGSLNLAGIa 189

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894  90 ----TYPPSQLLLTTAI-------AIKLGLTPFHFWFPEVLQGSSITTALLLSTLMKLPPTAILL-------LTSHSTNP 151
Cdd:COG1007  190 aalaAGGANSPLLLLGLvlvlaglAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLrllveafPGLAADWQ 269

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894 152 TLLTTMSIMSIALGGWMGLNQTQTRKILAFSSISHLGWMTIIIIYNPKLTLLS--FY--TYILMTTAIFLTLNTTNTLKL 227
Cdd:COG1007  270 LLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVSAalFYllAYLFMNLGAFAVILLLSRKGG 349

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 817638894 228 PTLMTS-----WTKTPMLNTTLFLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIISMLSLLGLFFYVRLAY 298
Cdd:COG1007  350 EAEEIEdlaglARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 2.85e-25

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 103.16  E-value: 2.85e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894   23 SNHWMMAWTGLELNTLAIIPLI-SKSHHPRAIEASTKYFLTQAAASALVLFSSVTNAQHTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894   91 YPPSQLLLTTAIAIKLGLTPFHFWFPEVLQGSSIT-TALLLSTLMKLPPTAILLLTS--HSTNPT---LLTTMSIMSIAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPvSALLAATLVKAGGYGLIRRSLlyLPSSPFiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894  165 GGWMGLNQTQTRKILAFSSISHLGWMTIII----IYNPKLTLLSFYTYILMTTAIFL-----TLNTTNTLKLPTLMTSWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 817638894  236 KTPMLNTTLFLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-297 7.46e-22

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 95.79  E-value: 7.46e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894   14 LLGTTITITSNHWMMAWTGLELNTLAIIPLIS-KSHHPRAIEASTKYFLTQAAASALVLF--------------SSVTNA 78
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFgisliygftgslnfEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894   79 QHTGQWDITQLTYppSQLLLTTAIAIKLGLTPFHFWFPEVLQGSSITTALLLSTLMKLPPTAILL-------LTSHSTNP 151
Cdd:TIGR01770 192 LSNGMLNISLLLL--GIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLrlflyilFGFSEAWQ 269

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894  152 TLLTTMSIMSIALGGWMGLNQTQTRKILAFSSISHLGWMTIIIIYNPKLTL--LSFY--TYILMTTAIFLTLNTTNTLKL 227
Cdd:TIGR01770 270 IFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIkaVLFYifIYALMSLGAFGVLSLLRSYKD 349

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 817638894  228 P-----TLMTSWTKT-PMLNTTLFLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIISMLSLLGLFFYVRLA 297
Cdd:TIGR01770 350 EwieyiSDFAGLFKTnPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 5.53e-153

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 433.48  E-value: 5.53e-153
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894   1 MSPLTSLISTMSLLLGTTITITSNHWMMAWTGLELNTLAIIPLISKSHHPRAIEASTKYFLTQAAASALVLFSSVTNAQH 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894  81 TGQWDITQLTYPPSQLLLTTAIAIKLGLTPFHFWFPEVLQGSSITTALLLSTLMKLPPTAILLLTSHSTNPTLLTTMSIM 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894 161 SIALGGWMGLNQTQTRKILAFSSISHLGWMTIIIIYNPKLTLLSFYTYILMTTAIFLTLNTTNTLKLPTLMTSWTKTPML 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894 241 NTTLFLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIISMLSLLGLFFYVRLAYCSTITLPPNPSNKMKQWSPKKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 817638894 321 VNILIPTLTSLSISLLPLSPMILATI 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-315 3.35e-128

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 370.67  E-value: 3.35e-128
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894   1 MSPLTSLISTMSLLLGTTITITSNHWMMAWTGLELNTLAIIPLISKSHHPRAIEASTKYFLTQAAASALVLFSSVTNAQH 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894  81 TGQWDITQLTYPPSQLLLTTAIAIKLGLTPFHFWFPEVLQGSSITTALLLSTLMKLPPTAiLLLTSHSTNPTLLTTMSIM 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFA-LILQIAPTNPTLLITLGLT 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894 161 SIALGGWMGLNQTQTRKILAFSSISHLGWMTIIIIYNPKLTLLSFYTYILMTTAIFLTLNTTNTLKLPTLMTSWTKTPML 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 817638894 241 NTTLFLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIISMLSLLGLFFYVRLAYCSTITLPPNPSNKMKQW 315
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPW 314
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-326 7.44e-123

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 356.92  E-value: 7.44e-123
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894   1 MSPLTSLISTMSLLLGTTITITSNHWMMAWTGLELNTLAIIPLISKSHHPRAIEASTKYFLTQAAASALVLFSSVTNAQH 80
Cdd:MTH00070   1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894  81 TGQWDITQLTYPPSQLLLTTAIAIKLGLTPFHFWFPEVLQGSSITTALLLSTLMKLPPTAILLLTSHSTNPTLLTTMSIM 160
Cdd:MTH00070  81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894 161 SIALGGWMGLNQTQTRKILAFSSISHLGWMTIIIIYNPKLTLLSFYTYILMTTAIFLTLNTTNTLKLPTLMTSWTKTPML 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894 241 NTTLFLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIISMLSLLGLFFYVRLAYCSTITLPPNPSNKMKQWSPKKP 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320


                 ....*.
gi 817638894 321 VNILIP 326
Cdd:MTH00070 321 TNNLLS 326
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-326 7.00e-113

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 331.81  E-value: 7.00e-113
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894   1 MSPLTSLISTMSLLLGTTITITSNHWMMAWTGLELNTLAIIPLISKSHHPRAIEASTKYFLTQAAASALVLFSSVTNAQH 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894  81 TGQWDITQLTYPPSQLLLTTAIAIKLGLTPFHFWFPEVLQGSSITTALLLSTLMKLPPTAILLLTSHSTNPTLLTTMSIM 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894 161 SIALGGWMGLNQTQTRKILAFSSISHLGWMTIIIIYNPKLTLLSFYTYILMTTAIFLTLNTTNTLKLPTLMTSWTKTPML 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894 241 NTTLFLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIISMLSLLGLFFYVRLAYCSTITLPPNPSN-KMK-QWSPK 318
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNmKMKwQFENT 320


                 ....*...
gi 817638894 319 KPVNILIP 326
Cdd:MTH00105 321 KPMTLLPT 328
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-326 5.60e-94

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 283.40  E-value: 5.60e-94
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894   1 MSPLTSLISTMSLLLGTTITITSNHWMMAWTGLELNTLAIIPLISKSHHPRAIEASTKYFLTQAAASALVLFSSVTNAQH 80
Cdd:MTH00200   1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894  81 TGQWDITQLTYPPSQLLLTTAIAIKLGLTPFHFWFPEVLQGSSITTALLLSTLMKLPPTAILLLTSHSTNPTLLTTMSIM 160
Cdd:MTH00200  81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894 161 SIALGGWMGLNQTQTRKILAFSSISHLGWMTIIIIYNPKLTLLSFYTYILMTTAIFLTLNTTNTLKLPTLMTSWTKTPML 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894 241 NTTLFLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIISMLSLLGLFFYVRLAYCSTITLPPNPSNKMKQWSPKKP 320
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320


                 ....*.
gi 817638894 321 VNILIP 326
Cdd:MTH00200 321 SNLLVG 326
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-326 2.35e-81

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 251.39  E-value: 2.35e-81
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894   1 MSPLTSLISTMSLLLGTTITITSNHWMMAWTGLELNTLAIIPLISKSHHPRAIEASTKYFLTQAAASALVLFSSVTNAQH 80
Cdd:MTH00041   1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894  81 TGQWDITQLTYPPSQLLLTTAIAIKLGLTPFHFWFPEVLQGSSITTALLLSTLMKLPPTAILLLTSHSTNPTLLTTMSIM 160
Cdd:MTH00041  81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894 161 SIALGGWMGLNQTQTRKILAFSSISHLGWMTIIIIYNPKLTLLSFYTYILMTTAIFLTLNTTNTLKLPTLMTSWTKTPML 240
Cdd:MTH00041 161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894 241 NTTLFLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIISMLSLLGLFFYVRLAYCSTITLPPNPSNKMKQWSPKKP 320
Cdd:MTH00041 241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGN 320


                 ....*.
gi 817638894 321 VNILIP 326
Cdd:MTH00041 321 ITVYGV 326
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-325 9.19e-57

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 187.34  E-value: 9.19e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894   1 MSPLTSLISTMSLLLGTTITITSNHWMMAWTGLELNTLAIIPLISKSHHPRAIEASTKYFLTQAAASALVLFSSVTNAQh 80
Cdd:MTH00160   2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML- 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894  81 tgqwdITQLTYPPSQLLLTTAIAIKLGLTPFHFWFPEVLQGSSITTALLLSTLMKLPPtaiLLLTSHSTNPTLLTTMSIM 160
Cdd:MTH00160  81 -----NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAP---LILLSYLINNNFIIIIIIL 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894 161 SIALGGWMGLNQTQTRKILAFSSISHLGWMTIIIIYNPKLTLLSFYTYILMTTAIFLTLNTTNTLKLPTLMTSWTKTPML 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894 241 NTTLFLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIISMLSLLGLFFYVRLAYCSTITLPPNPSNKMKQWSPKKP 320
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFS 312


                 ....*
gi 817638894 321 VNILI 325
Cdd:MTH00160 313 LILNF 317
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 1-310 3.69e-47

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 162.26  E-value: 3.69e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894   1 MSPLTSLISTmSLLLGTTITITSNHWMMAWTGLELNTLAIIPLISKSHHPRAIEASTKYFLTQAAASALVLFSSvtnaqh 80
Cdd:MTH00011   4 TFPTMFLFSS-TMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------ 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894  81 TGQWDITQLTYPPSQLLLTTAIAIKLGLTPFHFWFPEVLQGSSITTALLLSTLMKLPPTAILLLTSHSTNPTLLTTMSIM 160
Cdd:MTH00011  77 TMMWSFPSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAM 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894 161 SIALGGWMGLNQTQTRKILAFSSISHLGWMTIIIIYNPKLTLLSFYTYILMTTAIFLTLNTTNTLKLPTLMTSWTKTPML 240
Cdd:MTH00011 157 SALAGGLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTT 236

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894 241 NTTLFLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIISMLSLLGLFFYVRLAYcSTITLPPNPSN 310
Cdd:MTH00011 237 SMSLFIMLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIF-NFMYLSPTFSS 305
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 1-325 4.06e-46

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 159.67  E-value: 4.06e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894   1 MSPLTSLISTMSLLLGTTITITSNHWMMAWTGLELNTLAIIPLISKSHHPRAIEASTKYFLTQAAASALVLFSSVTNAQH 80
Cdd:MTH00144   1 MSSPSNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894  81 TGQWDITqltyppsqLLLTTAIAIKLGLTPFHFWFPEVLQGSSITTALLLSTLMKLPPtaILLLTSHSTNPTLLTT---M 157
Cdd:MTH00144  81 SFSWFSM--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAP--LFLLSNFLDLYWLAYLlcvI 150

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894 158 SIMSIALGGWMGLNQTQTRKILAFSSISHLGWMTIIIIYNPKLTLLSFYTYILMTTAIFLTLNTTNTlKLPTLMTSWTKT 237
Cdd:MTH00144 151 SVLSALVGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDS-GSMKDLGSLKPS 229

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894 238 PMLNTTLFLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIISMLSLLGLFFYVRLAYCSTITlppnpSNKMKQWSP 317
Cdd:MTH00144 230 YKTGLSIISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLS-----SSKSKKSNS 304


                 ....*...
gi 817638894 318 KKPVNILI 325
Cdd:MTH00144 305 SKVLNSSI 312
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 12-313 7.39e-42

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 148.28  E-value: 7.39e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894  12 SLLLGTTITITSNHWMMAWTGLELNTLAIIPLISKSHHPRAIEASTKYFLTQAAASALVLFSSVTNAQHTgqwditqLTY 91
Cdd:MTH00197   6 IIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNL-------YLS 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894  92 PPSQLLLTTAIAIKLGLTPFHFWFPEVLQGSSITTALLLSTLMKLPPtaILLLTSHSTNPTLLTTMSIMSIALGGWMGLN 171
Cdd:MTH00197  79 LLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAP--LLILAFNSSSFMGLLICSVLSSLIGGIGGMN 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894 172 QTQTRKILAFSSISHLGWMTIIIIYNPKLTLLSFYTYILMTTAIFLTLNTTNTLKLPTLMTSWTKTPMLNTTLFLTLLSL 251
Cdd:MTH00197 157 QSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSL 236

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 817638894 252 AGLPPLTGFLPKWLIIQELTKQEMTPTATIISMLSLLGLFFYVRLAYCSTITLPPNPSNKMK 313
Cdd:MTH00197 237 GGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMINFLMK 298
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-296 1.05e-27

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 111.28  E-value: 1.05e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894  13 LLLGTTITITSNHWMMAWTGLELNTLAIIPLI-SKSHHPRAIEASTKYFLTQAAASALVLFSSVTNAQHTGQWDI----- 86
Cdd:MTH00196   2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGCALLCGTTGGLHLsyinl 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894  87 --------TQLTYPPSQLLLTTAIAIKLGLTPFHFWFPEVLQGSSITTALLLSTLMKLPPTAILLltSHSTNPTLLTTMS 158
Cdd:MTH00196  82 vlnsgqsfSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILV--SIGLNVNILLIGG 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894 159 IMSIALGGWMGLNQTQTRKILAFSSISHLGWMTIII----IYNPKLTLLSFYTYILMTTAIFLTLNTTNTLK--LPTLMT 232
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIeigsFESIQASLVYLFIYIIMSICVFSIILALNVYKnlIIEFSG 239

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 817638894 233 SWTKTPMLNTTLFLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIISMLSLLGLFFYVRL 296
Cdd:MTH00196 240 LSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-298 3.78e-26

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 108.28  E-value: 3.78e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894  14 LLGTTITITSNHWMMAWTGLELNTLAIIPLIS-KSHHPRAIEASTKYFLTQAAASALVLF--SSVTNAqhTGQWDITQL- 89
Cdd:COG1007  112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgiSLLYGA--TGSLNLAGIa 189

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894  90 ----TYPPSQLLLTTAI-------AIKLGLTPFHFWFPEVLQGSSITTALLLSTLMKLPPTAILL-------LTSHSTNP 151
Cdd:COG1007  190 aalaAGGANSPLLLLGLvlvlaglAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLrllveafPGLAADWQ 269

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894 152 TLLTTMSIMSIALGGWMGLNQTQTRKILAFSSISHLGWMTIIIIYNPKLTLLS--FY--TYILMTTAIFLTLNTTNTLKL 227
Cdd:COG1007  270 LLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVSAalFYllAYLFMNLGAFAVILLLSRKGG 349

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 817638894 228 PTLMTS-----WTKTPMLNTTLFLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIISMLSLLGLFFYVRLAY 298
Cdd:COG1007  350 EAEEIEdlaglARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 2.85e-25

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 103.16  E-value: 2.85e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894   23 SNHWMMAWTGLELNTLAIIPLI-SKSHHPRAIEASTKYFLTQAAASALVLFSSVTNAQHTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894   91 YPPSQLLLTTAIAIKLGLTPFHFWFPEVLQGSSIT-TALLLSTLMKLPPTAILLLTS--HSTNPT---LLTTMSIMSIAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPvSALLAATLVKAGGYGLIRRSLlyLPSSPFiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894  165 GGWMGLNQTQTRKILAFSSISHLGWMTIII----IYNPKLTLLSFYTYILMTTAIFL-----TLNTTNTLKLPTLMTSWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 817638894  236 KTPMLNTTLFLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
14-296 7.14e-24

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 101.82  E-value: 7.14e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894  14 LLGTTITITSNHWMMAWTGLELNTLAIIPLIS-KSHHPRAIEASTKYFLTQAAASALVLFSSVTNAQHTGQWDITQL--- 89
Cdd:PRK05777 113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIaka 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894  90 ---TYPPSQLLLT------TAIAIKLGLTPFHFWFPEVLQGSSITTALLLSTLMKLPPTAILL-------LTSHSTNPTL 153
Cdd:PRK05777 193 ladGSGNSLLLLFglvfllVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLLrllvvafGGLSEDWQQV 272

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894 154 LTTMSIMSIALGGWMGLNQTQTRKILAFSSISHLGWMTIIIIYNPKLTLLS--FY--TYILMTTAIF--LTLNTTNTLKL 227
Cdd:PRK05777 273 LAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYSAvlFYllAYLFMTLGAFgvISLLRRKGGEA 352

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 817638894 228 PTLmTSWT----KTPMLNTTLFLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIISMLSLLGLFFYVRL 296
Cdd:PRK05777 353 ESI-SDFAglskRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 13-296 1.05e-23

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 101.25  E-value: 1.05e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894  13 LLLGTTITITSNHWMMAWTGLELNTLAIIPLIS-KSHHPRAIEASTKYFLTQAAASALVLFSSVTNAQHTGQWDITQLTY 91
Cdd:MTH00199 106 VALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIQGINS 185

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894  92 PPS----QLLLTTAIAIKLGLTPFHFWFPEVLQGSSITTALLLSTLMKLPPTAILLLTSHSTNPTLLTtmSIMSIALGGW 167
Cdd:MTH00199 186 ILTgdvgKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLIC--AVLSIIYGAI 263

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894 168 MGLNQTQTRKILAFSSISHLGW----MTIIIIYNPKLTLLSFYTYILMTTAIF---LTLNTTNTLKLPTLMTSwTKTPML 240
Cdd:MTH00199 264 GALNQTKIKRLLAYSGIGHMGFilfgVAIGSFESIQASLIYMIIYVIMSICSFsiiLSLKLTKGLIVEVSGLS-RKNPVI 342

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 817638894 241 NTTLFLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIISMLSLLGLFFYVRL 296
Cdd:MTH00199 343 ALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-297 7.46e-22

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 95.79  E-value: 7.46e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894   14 LLGTTITITSNHWMMAWTGLELNTLAIIPLIS-KSHHPRAIEASTKYFLTQAAASALVLF--------------SSVTNA 78
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFgisliygftgslnfEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894   79 QHTGQWDITQLTYppSQLLLTTAIAIKLGLTPFHFWFPEVLQGSSITTALLLSTLMKLPPTAILL-------LTSHSTNP 151
Cdd:TIGR01770 192 LSNGMLNISLLLL--GIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLrlflyilFGFSEAWQ 269

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894  152 TLLTTMSIMSIALGGWMGLNQTQTRKILAFSSISHLGWMTIIIIYNPKLTL--LSFY--TYILMTTAIFLTLNTTNTLKL 227
Cdd:TIGR01770 270 IFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIkaVLFYifIYALMSLGAFGVLSLLRSYKD 349

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 817638894  228 P-----TLMTSWTKT-PMLNTTLFLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIISMLSLLGLFFYVRLA 297
Cdd:TIGR01770 350 EwieyiSDFAGLFKTnPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 13-296 4.10e-19

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 87.51  E-value: 4.10e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894  13 LLLGTTITITSNHWMMAWTGLELNTLAIIPLISKSHHPRAIEASTKYFLTQAAASALVLFSSVTNAQHTGQWDITQL--- 89
Cdd:COG0651  116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLaar 195

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894  90 --TYPPSQL-----LLTTAIAIKLGLTPFHFWFPEVL-QGSSITTALLLSTLMKLPPTAIL----LLTSHSTNP---TLL 154
Cdd:COG0651  196 laELDPGLLlaafaLLLVGFGIKAALFPLHFWLPDAYpAAPSPVSALLSGLLTKVGVYAILrvltLLFGADPALflgTLL 275

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894 155 TTMSIMSIALGGWMGLNQTQTRKILAFSSISHLGWMTIII-IYNPKLTLLSFY---TYILMTTAIFLT----LNTTNTLK 226
Cdd:COG0651  276 LVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLgLGTPLGLAGALFhllNHALAKALLFLAagaiERATGTRD 355

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894 227 LPTLMTSWTKTPMLNTTLFLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIISMLSLLGLFFYVRL 296
Cdd:COG0651  356 LDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRI 425
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 15-296 3.45e-17

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 82.60  E-value: 3.45e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894  15 LGTTITITSNHWMMAWTGLELNTLAIIPLISKSHHPRAI---------EASTKYFLTQAAASALVLFSSVTNAQHTGQ-- 83
Cdd:MTH00198 199 LGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGNeg 278

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894  84 --WDITQLTYPPSQ----------LLLTTAIAIKLGLTPFHFWFPEVLQGSSITTALLLSTLMKLppTAILLLTSHSTNP 151
Cdd:MTH00198 279 mlGTILSATLETTNielrqgslgyLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--TVYILLTSLVITS 356

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894 152 TLLTTMSIMSIALGGWMGLNQTQTRKILAFSSISHLGWMTIIIIYNPKLTLLSFYTYIL--MTTAI-----------FLT 218
Cdd:MTH00198 357 KLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQASWTYAVtyLVSALasftvictleeFGT 436

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894 219 LNTTNTLKLPTL-----------MTSWTK-TPMLNTTLFLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIISMLS 286
Cdd:MTH00198 437 RTPTSRQRDGSFgnynlvrrlvdLTILSRgQPYIAFSLAIVFLSLAGIPPLLGFLGKWFILVGSIKIAFSSSLSIYYLVA 516

                        330
                 ....*....|....*..
gi 817638894 287 LLGL-------FFYVRL 296
Cdd:MTH00198 517 LFAIictcisaFYYIRI 533
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-298 2.75e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 64.52  E-value: 2.75e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894  33 LELNTLAIIPLISKSHHPRAIEASTKYFLTQAAASALVLFSSVTNAQHTGQWDITQLT--YPPSQLLLT------TAIAI 104
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLAgaLAENPTVVTafgfvlLALAL 214

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894 105 KLGLTPFHFWFPEVLQG-SSITTALLLSTLMKLPPTAILLLTSH---------STNPTLLTTMSIMSIALGGWMGLNQTQ 174
Cdd:PRK08375 215 KAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAVYALIRIYFTvfggdfrfaLGLGWLLAVLALLSMLVGSLAALGQDD 294

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894 175 TRKILAFSSISHLGWMTIIIIYNPKLTLLS--FY---------TYILMTTAIFLTLNTTNTLKLPTLMTswtKTPMLNTT 243
Cdd:PRK08375 295 VKRVLAYSTVSQMGYILLGLALLTPLALAAglLHllhhalmkgALFLAAGAIEVTYGTRRLSELSGLGR---RMPLTAAA 371

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 817638894 244 LFLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIISMLSLLGLFFYVRLAY 298
Cdd:PRK08375 372 FAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWY 426
ndhB CHL00049
NADH dehydrogenase subunit 2
 51-263 3.26e-11

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 64.25  E-value: 3.26e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894  51 RAIEASTKYFLTQAAASALVL--FSSV--TNAQHTGQWDI------TQLTYPPSQLL----LTTAIAIKLGLTPFHFWFP 116
Cdd:CHL00049 159 RSNEATMKYLLMGGASSSILVygFSWLygLSGGEIELQEIvnglinTQMYNSPGISIalifITVGIGFKLSLAPFHQWTP 238

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894 117 EVLQGSSITTALLLSTLMKLPPTAIL-----LLTSHSTNP--TLLTTMSIMSIALGGWMGLNQTQTRKILAFSSISHLGW 189
Cdd:CHL00049 239 DVYEGSPTPVVAFLSVTSKVAASALAtrifdIPFYFSSNEwhLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGY 318

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894 190 MTI-IIIYNPKLTLLSFYTYilMTTAIFLTLNTTNTLKLPTLMT----------SWTKTPMLNTTLFLTLLSLAGLPPLT 258
Cdd:CHL00049 319 VIIgIIVGDSNDGYASMITY--MLFYIFMNLGTFACIVLFGLRTgtdnirdyagLYTKDPFLALSLALCLLSLGGIPPLA 396


                 ....*
gi 817638894 259 GFLPK 263
Cdd:CHL00049 397 GFFGK 401
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 38-192 3.33e-11

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 63.95  E-value: 3.33e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894  38 LAIIP---LISKSHHPRAIEASTKYFLTQAAASALVLFSSVTNAQHTGQW-----DITQLTYPPSQ-----LLLTTAIAI 104
Cdd:COG1008  142 LMLIPmyfLIGIWGGERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfdiaELAAAPLPLTAqlllfLAFFIAFAV 221

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894 105 KLGLTPFHFWFPEVL-QGSSITTALLLSTLMK----------LPptaILLLTSHSTNPTLLTtMSIMSIALGGWMGLNQT 173
Cdd:COG1008  222 KVPMFPFHTWLPDAHvEAPTAGSVLLAGVLLKmggygllrfaLP---LFPEASAYFAPLLAA-LGVIGIIYGALVALAQT 297

                        170
                 ....*....|....*....
gi 817638894 174 QTRKILAFSSISHLGWMTI 192
Cdd:COG1008  298 DLKRLIAYSSVSHMGFVLL 316
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-318 5.69e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 63.58  E-value: 5.69e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894  33 LELNTLAIIPLIS-KSHHPRAIEASTKYFLTQAAASALVLFSSvtnAQHTGQWDITQLTYPPSQL-------------LL 98
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGI---ALLYGQYGTLNMAYLAVKMsenptvvakialaLF 226

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894  99 TTAIAIKLGLTPFHFWFPEVLQG--SSITTALLLSTLMKLPPTAILLLT------SHSTNPTLLTTMSIMSIALGGWMGL 170
Cdd:PRK08376 227 IAGLAMKSGAVPVHMWLPDAYPAapSSISAMLLVIKQAGLYALARVLFSiygpaiNLATVGWVIIILGCLTMFVGVAMAV 306

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894 171 NQTQTRKILAFSSISHLGWMTI---IIIYNPKLTLLSFYTYILMTTAIFLTLN-----------------TTNTLKLPTL 230
Cdd:PRK08376 307 VQKDVKRLLAYHSVSQIGYMLLglgVGLAALGDPAMASYGEIALAGGIYHIVNhalykallfltagaviyETGTRNLNEL 386

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894 231 MTSWTKTPMLNTTLFLTLLSLAGLPPLTGFLPKWLIIQelTKQEMTPTATIISML-SLLGLFFYVRLAYcSTITLPPNPS 309
Cdd:PRK08376 387 GGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLIYE--SSALFNPILGVIAMIgSVLTLASFVKVFH-TAFFGPPSEK 463


                 ....*....
gi 817638894 310 NKMKQWSPK 318
Cdd:PRK08376 464 VMNVKEPPK 472
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-288 3.24e-09

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 58.03  E-value: 3.24e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894   50 PRAIEASTKYFLTQAAASALVLFS----SVTNAQHTGQWDITQLTYPPS-QLLLTTAI----AIKLGLTPFHFWFPEVLQ 120
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAilglYFLGGGTFDLLELLNLPLPFGvQTWLFLAFfiafAVKVPLFPLHTWLPDAHV 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894  121 GSSITTALLLS-TLMKLPPTAILLLT------SHSTNPTLLTTMSIMSIALGGWMGLNQTQTRKILAFSSISHLGWMTI- 192
Cdd:TIGR01972 232 EAPTAGSVILAgVLLKMGTYGFLRFNlplfpdASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLg 311

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894  193 IIIYNPKLTLLSFYTYI---LMTTAIFLTLNT----TNTLKLPTLMTSWTKTPMLNTTLFLTLLSLAGLPPLTGFLPKWL 265
Cdd:TIGR01972 312 IFSFNELGISGAVFQMIshgLITAALFLLVGVlyerAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFL 391

                         250       260
                  ....*....|....*....|...
gi 817638894  266 IIQELTKqeMTPTATIISMLSLL 288
Cdd:TIGR01972 392 ILLGSFK--VNPVVAFLAALGIV 412
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 13-194 4.81e-09

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 57.46  E-value: 4.81e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894  13 LLLGTTITITSNHWMMAWTGLELNTLAIIPLISKSHHPRAIEASTKYFLTQAAA------SALVLFSSVTNAQHTGQWDI 86
Cdd:PRK08676 111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894  87 TQLT-----YPPSQLLLT-----TAIAIKLGLTPFHFWFPEV-LQGSSITTALLLSTLMKLPPTAILLLTS-------HS 148
Cdd:PRK08676 191 TELAahaslLSPSVLGASflfifIGFLAKSGLVPFHTWLPAAyAKAPSVVSALLSGTVLNIGIYGILRLSAllrqsgaAE 270

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 817638894 149 TNPTLLTTMSIMSIALGGWMGLNQTQTRKILAFSSISHLGWMTIII 194
Cdd:PRK08676 271 QFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGI 316
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-263 4.89e-09

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 57.37  E-value: 4.89e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894  50 PRAIEASTKYFLTQAAASALVLF-SSVTNAQHTGQWDIT----QLTYPPSQLLLTT------AIAIKLGLTPFHFWFPEV 118
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGSTQLSaialALITSPSLGLALAlvfviaGIAFKISAVPFHQWTPDV 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894 119 LQGSSITTALLLSTLMKLP--PTAILLLTSHSTNPT-----LLTTMSIMSIALGGWMGLNQTQTRKILAFSSISHLGWMT 191
Cdd:PRK02504 237 YEGSPTPVVAFLSVGSKAAgfALAIRLLVTAFPSFDeqwklLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVM 316

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894 192 IIIIYNPKLTLLS--FY--TYILMT----TAIFLTLNTTNTLKLPTLMTSWTKTPMLNTTLFLTLLSLAGLPPLTGFLPK 263
Cdd:PRK02504 317 IGLVAGTEAGYASmvFYllAYLFMNlgafACVILFSLRTGTDQISDYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGFFGK 396
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 30-298 9.68e-08

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 53.46  E-value: 9.68e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894  30 WTGLELNTLAIIPLISKshhpRAIEASTKYFLTQAAASALVLFSSVTNAQHTGQWDITQ----LTYPPSQ-------LLL 98
Cdd:PRK08668 127 WEIMTFSSFMMVPMGKK----ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFADisqgLINDTSTgfalivfLFL 202

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894  99 TTAIAIKLGLTPFHFWFPE-----------VLQG--SSITTALLLSTLMKLPPTAILL-LTSHSTNPTL---LTTMSIMS 161
Cdd:PRK08668 203 LAFGVAKAGIFPLHVWAPDayseapqsfsaVLSGqlSKLGAYGFLLVLYVLPGTKLFSeFGTYRGVPLFnyiLAWLGNIS 282

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894 162 IALGGWMGLNQTQTRKILAFSSISHLGWmtiIIIYNPKLTLLSF-------YTYILMTTAIFLTLNT----TNTLKLPTL 230
Cdd:PRK08668 283 IIVGTLMAILQEDIKKLIAYSSVANGGY---ILVGLGLGTSLGFagglfhvFNHALFKGLFFLIFAAviyrTGTTKISEM 359

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 817638894 231 MTSWTKTPMLNTTLFLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIISMLSLLGLFFYVRLAY 298
Cdd:PRK08668 360 GGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMAFFGSIGSFLYVFRPLA 427
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 79-263 1.43e-07

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 53.39  E-value: 1.43e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894  79 QHTGQWDITQL-TYPPSQLLLTTAIAI-------KLGLTPFHFWFPEVLQGSSITTALLLSTLM---------KLPPTAi 141
Cdd:PRK12644 182 QAAGTYRLSELlADPPTGPAVSVAVVLilvgalsKSAIVPFHFWLPGAMAAPTPVSAYLHAAAMvkagiylvaRLAPGF- 260

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894 142 llltSHST--NPTLLTtMSIMSIALGGWMGLNQTQTRKILAFSSISHLGWMTIIIIYNPKLTLLSFYTYI----LMTTAI 215
Cdd:PRK12644 261 ----ADVPvwRPTVLV-LGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRDAALAGLAMLlahaLFKAAL 335

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 817638894 216 FLTL----NTTNTLKLPTLMTSWTKTPMLNTTLFLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12644 336 FLVVgiidHSTGTRDIRKLSGLGRRQPVLAVVAALAAASMAGLPPLLGFVAK 387
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 50-194 2.20e-07

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 52.13  E-value: 2.20e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894  50 PRAIEASTKYFLTQAAASALVLFS----SVTNAQHTGQWDITQLTYPP----SQLLLTTAI----AIKLGLTPFHFWFPE 117
Cdd:PRK05846 157 KNRIYAATKFFLYTLLGSLLMLVAiiylVVVYYNATGTFDIADLLNLPlppgVQYWLFLAFfiafAVKMPMFPLHTWLPD 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894 118 VLQ-----GSSITTALLLST--------LMKLPPTAillltSHSTNPtLLTTMSIMSIALGGWMGLNQTQTRKILAFSSI 184
Cdd:PRK05846 237 AHVqaptaGSVLLAGILLKMgaygllrfSLPLFPDA-----SHEFAP-IIITLGVIAIIYGALVALAQTDIKKLIAYSSI 310

                        170
                 ....*....|
gi 817638894 185 SHLGWMTIII 194
Cdd:PRK05846 311 SHMGFVTLGI 320
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 20-192 9.48e-07

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 50.31  E-value: 9.48e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894  20 TITSNHWMMAWTGLELNTLAIIPLISKSHHPRAIEASTKYFLTQAAASALVLFSSV----------TNAQHTGQWdiTQL 89
Cdd:PRK06458 124 ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFGTIlvyanaatvmGDGEMAILW--TEL 201

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894  90 TYPPSQL---LLTTAIAI-------KLGLTPFHFWFPEV-LQGSSITTALLLSTLMKLPPTAIL---LLTSHSTNP---- 151
Cdd:PRK06458 202 LKHASLLdptLMKLAFVFlligfgtKVGLFPMHAWLPDAhSEAPSPVSALLSGVLLNVALYAVLryyILIDAAIGSdfpg 281

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 817638894 152 TLLTTMSIMSIALGGWMGLNQTQTRKILAFSSISHLGWMTI 192
Cdd:PRK06458 282 RLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAF 322
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 55-194 2.69e-06

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 48.87  E-value: 2.69e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894  55 ASTKYFLTQAAASALVLFSSVTNAQHTGQ--WDITQLT---YPPS-QLLLTT----AIAIKLGLTPFHFWFPEVL-QGSS 123
Cdd:PRK12561 138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGaksYPLAlELLLYAgfliAFGVKLPIFPLHTWLPDAHgEASA 217

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 817638894 124 ITTALLLSTLMKLPPTAI------LLLTSHSTNPTLLTTMSIMSIALGGWMGLNQTQTRKILAFSSISHLGWMTIII 194
Cdd:PRK12561 218 PVSMILAGVLLKMGGYALirfnvqMLPDAHVYFAPALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLLGI 294
PRK12650 PRK12650
DUF4040 family protein;
29-263 5.91e-06

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 48.12  E-value: 5.91e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894  29 AWtglELNTLAIIPLISKSHhPRAIEASTKYFLTQAAASALVLFSSVTNAQHTGQWDITQLTYPPS---QLLLTTAIAIK 105
Cdd:PRK12650 138 AW---ELVSLASFFLIARSG-SGGEAGSIRTLILTFFGGLTLLAAVAIAATQTGTTSLSGILHSDVwaeKPGLTTVVAVL 213

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894 106 LGLT--------PFHFWFPEVLQGSSITTALLLSTLMKLPPTAILLLTS--HSTNPT---LLTTMSIMSIALGGWMGLNQ 172
Cdd:PRK12650 214 IAVAaftksaqfPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSpvFHDVAVwnwLLIIVGMITALMGAVFAVQK 293

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894 173 TQTRKILAFSSISHLGWM-TIIIIYNP-KLTLLSFYT--YILMTTAIFLTL----NTTNTLKLPTLMTSWTKTPMLNTTL 244
Cdd:PRK12650 294 TDLKKLTAYSTVSQLGWIvATIGVGTPfALTAAVVHTlaHALFKSSLFMLIgvvdHQAGTRDIRRLGSLWRRMPFTFVSV 373

                        250
                 ....*....|....*....
gi 817638894 245 FLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12650 374 TIAALSMAAVPPLFGFVSK 392
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
34-308 3.15e-05

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 45.41  E-value: 3.15e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894  34 ELNTLAIIPLISKSHHPRAIEASTKYFLTQAAASALVLFSSVTNAQHTGQWDITQLTY-----PPSQLLLTTAIAIKLG- 107
Cdd:PRK06277 130 EIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDIHNallvnPTSPVIYGGLLLLIFGl 209

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894 108 -----LTPFHFWFPEVLQGSSITTALLLSTLMKLPPTAILL--------LTSHSTNPTLLTTMSIMSIALGGWMGLNQTQ 174
Cdd:PRK06277 210 lygsgLPPFHTIKSDIYAKAKPFGSALLQTFSKFVLVALMLvifklfggLSYFPSAQGVLIALSVLAMVFGVVMALLQTD 289

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894 175 TRKILAFSSISHLGWMTIIIIYNPKLT----LLSFYTYILMTTAIFLTL-------NTTNTLKLPTLMTSwtkTPMLNTT 243
Cdd:PRK06277 290 YKRLLAYHAISQGGYVAAGLALGTPLGivagIFHAINHVIYKSALFLGAgivsyrtKTSNLRKLGGLLPV---MPVVAFM 366

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 817638894 244 LFLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIISMLSLLGLFFYVRLAYcsTITLPPNP 308
Cdd:PRK06277 367 VLCAKLAISGVPPFNGFQSKLMLAQAAMQANMPELAIIMIIVSIGTFVSMMKAFY--LIYLKPKP 429
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 91-297 5.09e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 44.91  E-value: 5.09e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894  91 YPPSQLLLTTAIAIKLGLTPFHFWFPEVLQGSSITTALLLST---------LMKLPPTaillLTSHSTNPTLLTTMSIMS 161
Cdd:PRK12647 194 YLAILLLVLGGAFTKSAQFPFHFWLPNAMEAPTPVSAYLHSAtmvkagiylLARLNPV----LGGTPLWQTILPLFGGLT 269

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894 162 IALGGWMGLNQTQTRKILAFSSISHLGWMTIIIIYNPKLTLLSFYTYI----LMTTAIFLTLNT----TNTLKLPTLMTS 233
Cdd:PRK12647 270 MLTGALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSELAIKAAVLFLvahsLYKGALFMVAGIidheTGTRDITKLGGL 349

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 817638894 234 WTKTPMLNTTLFLTLLSLAGLPPLTGFLPKWLIIQELTkqEMTPTATIISMLSLLG--LFFYVRLA 297
Cdd:PRK12647 350 RRAMPITAAAALLAALSMAGLPPLFGFLAKELIYEALL--EAPLWSLILTVAAVLGnaLMVAVAFL 413
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 21-270 8.89e-05

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 44.37  E-value: 8.89e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894  21 ITSNHWMMAWTGLELNTLAIIPLISKSHH-PRAIEASTKYFLTQAAASALVLFSSVTNAQHTGQWDITQL-----TYPPS 94
Cdd:COG1009  128 VLSDNLLLLFVFWELVGLCSYLLIGFWYEkPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELlaaapTILSS 207

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894  95 QLLLTTAIAI------KLGLTPFHFWFPEVLQGSSITTALLLSTLMKlppTA--ILLLTSH---STNPTLLTTMSIMSIA 163
Cdd:COG1009  208 PLLTLILLLLllgafgKSAQFPLHFWLPDAMEGPTPVSALLHAATMV---KAgvYLLARLSplfALSPVWLTVVAIIGAI 284

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894 164 ---LGGWMGLNQTQTRKILAFSSISHLGWMTIIIiynpKLTLLSFYTYILMTTAIF------------LTLNTTNTLKLP 228
Cdd:COG1009  285 talFAALIALAQTDIKRVLAYSTVSQLGYMFLAL----GVGAYVAALFHLLTHAFFkallflgagsviHATGTRDIRKMG 360

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 817638894 229 TLmtsWTKTPMLNTTLFLTLLSLAGLPPLTGFLPKWLIIQEL 270
Cdd:COG1009  361 GL---RKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEAA 399
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-271 1.55e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 43.40  E-value: 1.55e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894  33 LELNTLAIIPLISKSHHPRAIEASTKYFLTQAAASALVLFSSVTNAQHTGQWDITQL-TYPPSQL-LLTTAIAIKLGLTP 110
Cdd:PRK07234 123 LEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLaTADPEAFaLIALGLLVKGGIFV 202

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894 111 FHFWFPEVLQGSSITTALLLS-TLMKLPPTAILLLTSHSTNPTL-LTTMSIMSIALGGWMGLNQTQTRKILAFSSISHLG 188
Cdd:PRK07234 203 SGLWLPLTHSEAEPPVSALLSgVVVKAGVFPLVRCALDVPGLDLiVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQLG 282

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894 189 WmtiiIIYNPKLTLLSFYTYILMTTAIFL---TLNTTNTLKLPTLMT-SWTKTPMlnttlFLTLLSLAGLPPLTGFLPKW 264
Cdd:PRK07234 283 F----ILAAPLVGGLYALAHGLVKSTLFLcagALPSRNFTELISQMLgIGKWIPL-----TMASFSIAGFPLLAGFVSKV 353


                 ....*..
gi 817638894 265 LIIQELT 271
Cdd:PRK07234 354 LTLKNLL 360
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
94-190 2.04e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 43.15  E-value: 2.04e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894  94 SQLLLTTAI----AIKLGLTPFHFWFPEV-LQGSSITTALLLSTLMKLPPTAIL------LLTSHSTNPTLLTTMSIMSI 162
Cdd:PRK06473 203 TQLLLLAPIlvgfGIKIPLVPFHTWLPDAhVEASTPVSVLLAGVLLKLGTYGLLrfgvglFPEAWVYLAPWLATWAVVSV 282

                         90       100
                 ....*....|....*....|....*...
gi 817638894 163 ALGGWMGLNQTQTRKILAFSSISHLGWM 190
Cdd:PRK06473 283 LYGASCAIAQKDMKKMVAYSSIGHMGYI 310
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
55-268 5.33e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 41.62  E-value: 5.33e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894  55 ASTKYFLTQAAASALVL--------FSSVTNAQHTGQwdITQLTYPPSQLLLTTAI----AIKLGLTPFHFWFPEVLQGS 122
Cdd:PRK07363 158 ASIKFLIYTAVSGLLVLaaflgivwLSGSTSFDYDAI--STQNLSLNTQLILLTGLllgfGIKIPLVPLHTWLPDAYTEA 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894 123 SITTALLL-STLMKLPPTAILLL-------TSHSTNPTLLTTMSImSIALGGWMGLNQTQTRKILAFSSISHLGWMTIII 194
Cdd:PRK07363 236 SPAVAILLgGVLAKLGTYGLLRFglqlfpqTWSLVAPGLAIIGTI-SVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAA 314

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894 195 IYNPKLTLLSFYTYILMTTAIFLTL-----------NTTNTLKLPTLMTSWTKTPMLNTTLFLTLLSLAGLPPLTGFLPK 263
Cdd:PRK07363 315 AAGTQLSLLGAVAQMISHGLILALLfhlvgiverkvGTRDLDVLNGLMNPIRGLPLTSALLVLAGMASAGIPGLVGFVAE 394


                 ....*
gi 817638894 264 WLIIQ 268
Cdd:PRK07363 395 FIVFQ 399
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 48-263 5.73e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 41.74  E-value: 5.73e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894  48 HHPRAIEASTKYFLTQAAASALVLFSSVTNAQHTGQWDITQLTYPPS--------QLLLTTAIAIKLGLT------PFHF 113
Cdd:PRK12649 156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSElienikghPLFLITLILIFIGAAaksaqgPFYI 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894 114 WFPEVLQGSSITTALLLSTLMKLPPTAIL-----LLTSHSTNPTLLTTMSIMSIALGGWMGLNQTQTRKILAFSSISHLG 188
Cdd:PRK12649 236 WLPNAMEAPTPVSAFLHSATMVKAGVYLVarihpIFSGTEAWFILVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQLA 315

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894 189 WMTIIIIYN----PKLTLLSfYTYILMTTAIF---------LTLNTTNTLKLPTLMTSWTKTPMLNTTLFLTLLSLAGLP 255
Cdd:PRK12649 316 YLMTMYGYTtyhePGLGVAA-ATFHLLNHATFkaclflvagIVAHEAATRDIRKLGGLRKEMPITFIVASIAALAMAGIP 394


                 ....*...
gi 817638894 256 PLTGFLPK 263
Cdd:PRK12649 395 PLNGFLSK 402
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 152-267 6.50e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 41.26  E-value: 6.50e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894 152 TLLTTMSIMSIALGGWMGLNQTQTRKILAFSSISHLGWMTIIIIYNPKLTLLSFYTYI----LMTTAIFLTLNTT----N 223
Cdd:PRK12662 280 NVFMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIvnhsIVKSALFMVSGSIsyhfG 359

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 817638894 224 TLKLPTLMTSWTKTPMLNTTLFLTLLSLAGLPPLTGFLPKWLII 267
Cdd:PRK12662 360 TTKLEDCLNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYIL 403
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 95-268 7.12e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 41.49  E-value: 7.12e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894  95 QLLLTTAIAIKLGLTPFHFWFPEVL-QGSSITTALLLSTLMKLPPTAI-----LLLTSHSTNpTLLTTMSIMSIALGGWM 168
Cdd:PRK12665 212 FAVLLVAFGIKAAVFPLSFWLPDSYpTAPAPVTAVFAGLLTKVGVYAIirthtLLFPGGGLD-TLLMVVALLTMVVGILG 290

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894 169 GLNQTQTRKILAFSSISHLGWMTIIIIYNPKLTLLS--FYT--YILMTTAIFLTLN-------TTNTLKLPTLMTSwtkT 237
Cdd:PRK12665 291 AIAQSDIKRLLSFTLVSHIGYMVFGIALSTVAGLSGaiYYVahHITVQTTLFLVVGlierqagSSSLRRLGGLAKA---S 367

                        170       180       190
                 ....*....|....*....|....*....|.
gi 817638894 238 PMLNTTLFLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK12665 368 PLLAVLFFVPALNLGGIPPFSGFIGKVALLE 398
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
10-190 9.23e-04

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 40.84  E-value: 9.23e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894  10 TMSLLLGTTITITSNHW---MMAW--TGLELNTLaiipLISKSHHPRAIEASTKYFLTQAAASALVLFSSVTNAQHTGQW 84
Cdd:PRK08168 106 LAGVLAAVHLLVLSDHLlvlIAAWaaISLALHRL----LCFYPDRPFARLAAHKKFIADRLAELLLLAAAALAYLEVGSL 181

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894  85 DITQL--------TYPPSQ---LLLTTAIAIKLGLTPFHFWFPEVLQGSSITTALLLSTL-----MKLPPTAILLLTSHS 148
Cdd:PRK08168 182 SLSALwahlaaqgASPSLQaaaLLLVLAVILKTAQLPVHGWLIQVMEAPTPVSALLHAGVvnlggFVLIRFAPLLEQAPP 261

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 817638894 149 TNpTLLTTMSIMSIALGGWMGLNQTQTRKILAFSSISHLGWM 190
Cdd:PRK08168 262 AR-WLLVLVGLATAVLAGLVMLTRISIKVRLAWSTVAQMGFM 302
PRK12646 PRK12646
DUF4040 family protein;
91-288 1.09e-03

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 40.89  E-value: 1.09e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894  91 YPPSQLLLTTAIAIKLGLTPFHFWFPEVLQGSSITTALLLSTLMKLPPTAIL-----LLTSHSTNPTLLTTMSIMSIALG 165
Cdd:PRK12646 209 FIPMIFMFLLGAFTKSAQFPFHIWLPRAMAAPTPVSAYLHSATMVKAGIFLLfrftpLLGLSNMYIYIVTFVGLITMLFG 288

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894 166 GWMGLNQTQTRKILAFSSISHLGW-MTII-----IIYNPKLTLLSFYTYIL-------MTTAIF---------LTLNTTN 223
Cdd:PRK12646 289 SITALKQWDLKGILAYSTISQLGMiMAMVgigggYAQHQQDAIASIYVFVLfaalfhlMNHAIFkcalfmgvgIIDHEAG 368

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 817638894 224 TLKLPTLMTSWTKTPMLNTTLFLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIISMLSLL 288
Cdd:PRK12646 369 TRDIRILSGMRQLFPKMNLVMTIAALSMAGVPFLNGFLSKEMFLDALTQTGQLSQFSLISMIIIV 433
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 101-195 1.34e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 40.29  E-value: 1.34e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894 101 AIAIKLGLTPFHFWFPEVLQGSSITTALLLS-TLMKLPPTA-------ILLLTSHSTNPTLLtTMSIMSIALGGWMGLNQ 172
Cdd:MTH00226 239 AMAVKIPIFPFHIWLPKAHVEAPVAGSVLLAgILLKLGGYGlvrlswpILPLGAQNLAPAVI-AMGIVGIVYGSFATCRQ 317

                         90       100
                 ....*....|....*....|...
gi 817638894 173 TQTRKILAFSSISHLGWMTIIII 195
Cdd:MTH00226 318 IDVKRLVAYSSVAHMGLVSITLV 340
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 96-272 1.69e-03

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 40.20  E-value: 1.69e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894  96 LLLTTAIAIKLGLTPFHFWFPEVLQGSSITTALLLSTL-MKLPPTAILLLTSHSTNPTL-----LTTMSIMSIALGGWMG 169
Cdd:PRK08042 184 LLGVIGFGLLAGIIPLHGWVPQAHANASAPAAALFSTVvMKIGLLGILTLSLLGGNAPLwwgvaLLVLGMITAFVGGLYA 263

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894 170 LNQTQTRKILAFSSISHLG--------WMTIIIIYNPKLTLLSF-------YTYILMTTAIFLTLNT----TNTLKLPTL 230
Cdd:PRK08042 264 LMEHNIQRLLAYHTLENIGiillglgaGVTGIALEQPALIALGLvgglyhlLNHSLFKSVLFLGAGSvwfrTGHRDIEKL 343

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 817638894 231 MTSWTKTPMLNTTLFLTLLSLAGLPPLTGFLPKWLIIQELTK 272
Cdd:PRK08042 344 GGIGKKMPVISIAMLVGLMAMAALPPLNGFAGEWVIYQSFFK 385
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
96-294 2.42e-03

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 39.55  E-value: 2.42e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894  96 LLLTTAIAIKLGLTPFhFWFPEVLQGSSITTALLLSTLM-KLPPTAIL----LLTSHSTNPT--LLTTMSIMSIALGGWM 168
Cdd:PRK12663 211 LLFLLAFGMKAALFPF-MWLPAAYHTPNTEVAALFAALLtKVGIYALIrvftLLFPQERELLhpLLATMAAITMVIGALG 289

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894 169 GLNQTQTRKILAFSSISHLGWMTI-IIIYNPK-LTLLSFYTY--ILMTTAIFLTLNTTNTL----KLPTLMTSWTKTPML 240
Cdd:PRK12663 290 ALAYKDIRRIAGYQVISSIGFILLgLALGTPAgINGAIFYLVhdMVVKTALFLIAGSLVRLtgyrSLQYLGGLYRKEPLF 369

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894 241 NTTLFLTLLSLAGLPPLTGFLPKWLIIQ-ELTKQEMTPTAT-----IISMLSLLGLFFYV 294
Cdd:PRK12663 370 GALFLILIFAIGGLPPFSGFWGKVLLVQgALDNGAYILLALmlitsLITMYSLFRIFFLA 429
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
 53-192 3.32e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 39.28  E-value: 3.32e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817638894  53 IEASTKYFLTQAAASALVLFSSVTNAQHTGQWD-----ITQLTYPPSQLLLT---TAIAIKLGLTPFHFWFPEVLQGSSI 124
Cdd:MTH00204 162 VRASYYFFFYTFAGSVFMLLGIFQLYSITGTTDyqillNIKLPLSIQKWLLVgffLSLAVKIPQIPFHIWLPQAHVEAPV 241

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 817638894 125 TTALLLS-TLMKLP-------PTAILLLTSHSTNPtLLTTMSIMSIALGGWMGLNQTQTRKILAFSSISHLGWMTI 192
Cdd:MTH00204 242 AGSVILAgILLKLGgygflrfSWPLFPAASEYFAP-LIVMLSVIAVIYGSLTTCRQVDFKRLIAYSSVAHMGLVPL 316
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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