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Conserved domains on  [gi|813424645|ref|YP_009132312|]
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NADH dehydrogenase subunit 1 (mitochondrion) [Penaeus penicillatus]

Protein Classification

NADH dehydrogenase subunit 1( domain architecture ID 10009622)

NADH dehydrogenase subunit 1 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 3-307 4.92e-161

NADH dehydrogenase subunit 1; Provisional


:

Pssm-ID: 177241  Cd Length: 306  Bit Score: 450.76  E-value: 4.92e-161
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645   3 LIMVINYLLLIICVLVGVAFVTLLERKILGYIQIRKGPNKVGFMGLLQPFADAVKLFTKEQTLPVMSNFLPYYLSPVFSL 82
Cdd:MTH00193   2 MMMLINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFSL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645  83 FVSLIVWLVMPYELGLMNFSMSTLFFLCCTSLGVYTTMSAGWASNSKYSLLGSLRAVAQTISYEVSLALILLSFIFLVGG 162
Cdd:MTH00193  82 FLSLLIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIGS 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645 163 FDLTLFSLYQRDVWLLWFTFPLALIWFASCLAETNRTPFDFAEGESELVSGFNTEYSSGGFALIFMAEYASILFMSMLFA 242
Cdd:MTH00193 162 FNLLDFMNYQKYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLFV 241

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 813424645 243 LIFLGGNLISPFYYLKLVMVAFAFVWVRGTLPRFRYDKLMYLAWKSFLPVALNYLVFFMGVKSIC 307
Cdd:MTH00193 242 LMFLGGDLLSLLFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKIFL 306
 
Name Accession Description Interval E-value
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 3-307 4.92e-161

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 450.76  E-value: 4.92e-161
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645   3 LIMVINYLLLIICVLVGVAFVTLLERKILGYIQIRKGPNKVGFMGLLQPFADAVKLFTKEQTLPVMSNFLPYYLSPVFSL 82
Cdd:MTH00193   2 MMMLINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFSL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645  83 FVSLIVWLVMPYELGLMNFSMSTLFFLCCTSLGVYTTMSAGWASNSKYSLLGSLRAVAQTISYEVSLALILLSFIFLVGG 162
Cdd:MTH00193  82 FLSLLIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIGS 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645 163 FDLTLFSLYQRDVWLLWFTFPLALIWFASCLAETNRTPFDFAEGESELVSGFNTEYSSGGFALIFMAEYASILFMSMLFA 242
Cdd:MTH00193 162 FNLLDFMNYQKYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLFV 241

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 813424645 243 LIFLGGNLISPFYYLKLVMVAFAFVWVRGTLPRFRYDKLMYLAWKSFLPVALNYLVFFMGVKSIC 307
Cdd:MTH00193 242 LMFLGGDLLSLLFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKIFL 306
NADHdh pfam00146
NADH dehydrogenase;
10-299 9.01e-106

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 310.56  E-value: 9.01e-106
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645   10 LLLIICVLVGVAFVTLLERKILGYIQIRKGPNKVGFMGLLQPFADAVKLFTKEQTLPVMSNFLPYYLSPVFSLFVSLIVW 89
Cdd:pfam00146   3 LLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645   90 LVMPY--ELGLMNFSMSTLFFLCCTSLGVYTTMSAGWASNSKYSLLGSLRAVAQTISYEVSLALILLSFIFLVGGFDLTL 167
Cdd:pfam00146  83 AVIPFgpGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645  168 FSLYQRDVWLLWFTFPLALIWFASCLAETNRTPFDFAEGESELVSGFNTEYSSGGFALIFMAEYASILFMSMLFALIFLG 247
Cdd:pfam00146 163 IVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLG 242

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 813424645  248 GNLiSPF-------YYLKLVMVAFAFVWVRGTLPRFRYDKLMYLAWKSFLPVALNYLVF 299
Cdd:pfam00146 243 GWL-GPFplpgllwFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 3-299 1.55e-99

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 295.50  E-value: 1.55e-99
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645   3 LIMVINYLLLIICVLVGVAFVTLLERKILGYIQIRKGPNKVGFMGLLQPFADAVKLFTKEQTLPVMSNFLPYYLSPVFSL 82
Cdd:COG1005    9 LITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAF 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645  83 FVSLIVWLVMPY--ELGLMNFSMSTLFFLCCTSLGVYTTMSAGWASNSKYSLLGSLRAVAQTISYEVSLALILLSFIFLV 160
Cdd:COG1005   89 IPALLAFAVIPFgpGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLLA 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645 161 GGFDLTLFSLYQRD-VWLLWFTFPLALIWFASCLAETNRTPFDFAEGESELVSGFNTEYSSGGFALIFMAEYASILFMSM 239
Cdd:COG1005  169 GSLNLSEIVEAQAGgLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLVSA 248

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 813424645 240 LFALIFLGG-----------NLISPFYY-LKLVMVAFAFVWVRGTLPRFRYDKLMYLAWKSFLPVALNYLVF 299
Cdd:COG1005  249 LATTLFLGGwlgpfpilplgGLPGILWFlLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLVNLVL 320
 
Name Accession Description Interval E-value
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 3-307 4.92e-161

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 450.76  E-value: 4.92e-161
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645   3 LIMVINYLLLIICVLVGVAFVTLLERKILGYIQIRKGPNKVGFMGLLQPFADAVKLFTKEQTLPVMSNFLPYYLSPVFSL 82
Cdd:MTH00193   2 MMMLINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFSL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645  83 FVSLIVWLVMPYELGLMNFSMSTLFFLCCTSLGVYTTMSAGWASNSKYSLLGSLRAVAQTISYEVSLALILLSFIFLVGG 162
Cdd:MTH00193  82 FLSLLIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIGS 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645 163 FDLTLFSLYQRDVWLLWFTFPLALIWFASCLAETNRTPFDFAEGESELVSGFNTEYSSGGFALIFMAEYASILFMSMLFA 242
Cdd:MTH00193 162 FNLLDFMNYQKYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLFV 241

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 813424645 243 LIFLGGNLISPFYYLKLVMVAFAFVWVRGTLPRFRYDKLMYLAWKSFLPVALNYLVFFMGVKSIC 307
Cdd:MTH00193 242 LMFLGGDLLSLLFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKIFL 306
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
 7-305 8.08e-135

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 384.39  E-value: 8.08e-135
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645   7 INYLLLIICVLVGVAFVTLLERKILGYIQIRKGPNKVGFMGLLQPFADAVKLFTKEQTLPVMSNFLPYYLSPVFSLFVSL 86
Cdd:MTH00225   5 LKFLIMLICLLLSVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPILSLILSL 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645  87 IVWLVMPYELGLMNFSMSTLFFLCCTSLGVYTTMSAGWASNSKYSLLGSLRAVAQTISYEVSLALILLSFIFLVGGFDLT 166
Cdd:MTH00225  85 ILWSLYPSMFSIYSFKFGILFFLCISSLNVYTILLAGWSSNSKYALLGALRAVAQTISYEVSMALILLSIVFLVLTYNLF 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645 167 LFSLYQRDVWLLWFTFPLALIWFASCLAETNRTPFDFAEGESELVSGFNTEYSSGGFALIFMAEYASILFMSMLFALIFL 246
Cdd:MTH00225 165 DFSYNQKYFWFMFVLFPLFFCWMISMLAETNRAPFDFAEGESELVSGFNIEYSSGGFALIFMAEYGSILFMSMLTSILFF 244

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 813424645 247 GG--NLISPFYYLKLVMVAFAFVWVRGTLPRFRYDKLMYLAWKSFLPVALNYLVFFMGVKS 305
Cdd:MTH00225 245 GGffVTIDLFLILKIMLLAFWFIWVRGVLPRMRYDKLMSLTWKSFLPLSLAYLFMVLIILM 305
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
 3-303 6.27e-130

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 372.28  E-value: 6.27e-130
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645   3 LIMVINYLLLIICVLVGVAFVTLLERKILGYIQIRKGPNKVGFMGLLQPFADAVKLFTKEQTLPVMSNFLPYYLSPVFSL 82
Cdd:MTH00143   1 LVSLLSSVFTYLCVLLAVAFFTLLERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645  83 FVSLIVWLVMPYELGLMNFSMSTLFFLCCTSLGVYTTMSAGWASNSKYSLLGSLRAVAQTISYEVSLALILLSFIFLVGG 162
Cdd:MTH00143  81 ILALLLWQLYPSYFSSSYFGWGLLFFLCVSSLNVYGVLLAGWSSNSKYALLGAVRAVAQTISYEVSMSLILLFPLFLSGS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645 163 FDLTLFSLYQRDVWLLWFTFPLALIWFASCLAETNRTPFDFAEGESELVSGFNTEYSSGGFALIFMAEYASILFMSMLFA 242
Cdd:MTH00143 161 FSFIEISESQFSVWLGFLMFPVFLMWFVSCLAETNRAPFDFAEGESELVSGFNVEYGGGGFALLFLAEYANILFMSLLTV 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 813424645 243 LIFLGGNLISPFYY-----LKLVMVAFAFVWVRGTLPRFRYDKLMYLAWKSFLPVALNYLVFFMGV 303
Cdd:MTH00143 241 VLFFGGSSVLFLLGgvvfmFKVLFFAFLFIWVRASYPRFRYDLLMMLCWKSFLPFSLSILVLFVVL 306
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
 2-307 9.12e-122

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 351.52  E-value: 9.12e-122
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645   2 TLIMVINYLLLIICVLVGVAFVTLLERKILGYIQIRKGPNKVGFMGLLQPFADAVKLFTKEQTLPVMSNFLPYYLSPVFS 81
Cdd:MTH00218   1 MLLSLINLLLYILPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645  82 LFVSLIVWLVMPYELGLMNFSMSTLFFLCCTSLGVYTTMSAGWASNSKYSLLGSLRAVAQTISYEVSLALILLSFIFLVG 161
Cdd:MTH00218  81 LTLALLLWMPLPLPFSLINLNLGVLFILAISSLGVYSILWSGWASNSKYALMGALRAVAQTISYEVSLGLIILSLIILTG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645 162 GFDLTLFSLYQRDVWLLWFTFPLALIWFASCLAETNRTPFDFAEGESELVSGFNTEYSSGGFALIFMAEYASILFMSMLF 241
Cdd:MTH00218 161 GFSLEGFNLTQETIWLLIPEWPLALMWFISTLAETNRAPFDLTEGESELVSGFNVEYSGGPFALFFLAEYMNILFMNTLS 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 813424645 242 ALIFLGGNLISPFYYLKLVMVAFAFVWVRGTLPRFRYDKLMYLAWKSFLPVALNYLVFFMGVKSIC 307
Cdd:MTH00218 241 VILFLGTSLTTINLMLKATLLVFLFLWVRASLPRFRYDQLMHLAWKNFLPLSLALLLLHTSLPLSF 306
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 1-294 1.73e-118

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 343.80  E-value: 1.73e-118
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645   1 MTLIMVINYLLLIICVLVGVAFVTLLERKILGYIQIRKGPNKVGFMGLLQPFADAVKLFTKEQTLPVMSNFLPYYLSPVF 80
Cdd:MTH00111   3 TLLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTPIL 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645  81 SLFVSLIVWLVMPYELGLMNFSMSTLFFLCCTSLGVYTTMSAGWASNSKYSLLGSLRAVAQTISYEVSLALILLSFIFLV 160
Cdd:MTH00111  83 ALLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLILLS 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645 161 GGFDLTLFSLYQRDVWLLWFTFPLALIWFASCLAETNRTPFDFAEGESELVSGFNTEYSSGGFALIFMAEYASILFMSML 240
Cdd:MTH00111 163 GGYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMNTL 242

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 813424645 241 FALIFLGGNLISPFYYL-------KLVMVAFAFVWVRGTLPRFRYDKLMYLAWKSFLPVAL 294
Cdd:MTH00111 243 TTILFLNPSTLNLPPELftinlmtKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTL 303
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
 1-301 1.33e-116

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 338.90  E-value: 1.33e-116
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645   1 MTLIMVINYLLLIICVLVGVAFVTLLERKILGYIQIRKGPNKVGFMGLLQPFADAVKLFTKEQTLPVMSNFLPYYLSPVF 80
Cdd:MTH00071   3 TLISLIINPLLYIIPVLLAVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMPTM 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645  81 SLFVSLIVWLVMPYELGLMNFSMSTLFFLCCTSLGVYTTMSAGWASNSKYSLLGSLRAVAQTISYEVSLALILLSFIFLV 160
Cdd:MTH00071  83 ALTLALIIWTPLPMPNNLSNLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVTLGLILLCLILLT 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645 161 GGFDLTLFSLYQRDVWLLWFTFPLALIWFASCLAETNRTPFDFAEGESELVSGFNTEYSSGGFALIFMAEYASILFMSML 240
Cdd:MTH00071 163 GGFSLMNFNTTQEFMWLIIPAWPMAAMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNTL 242

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 813424645 241 FALIFLGG--NLISPFYY-----LKLVMVAFAFVWVRGTLPRFRYDKLMYLAWKSFLPVALNYLVFFM 301
Cdd:MTH00071 243 STILFLGStyNHLQPELStmnlmIKASILSMLFLWVRASYPRFRYDQLMHLVWKNFLPITLAMTIFHI 310
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
 3-294 1.14e-114

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 333.88  E-value: 1.14e-114
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645   3 LIMVINYLLLIICVLVGVAFVTLLERKILGYIQIRKGPNKVGFMGLLQPFADAVKLFTKEQTLPVMSNFLPYYLSPVFSL 82
Cdd:MTH00134   6 ITHIINPLAYIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPMLAL 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645  83 FVSLIVWLVMPYELGLMNFSMSTLFFLCCTSLGVYTTMSAGWASNSKYSLLGSLRAVAQTISYEVSLALILLSFIFLVGG 162
Cdd:MTH00134  86 TLALTLWAPMPMPYPVTDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVIIFTGG 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645 163 FDLTLFSLYQRDVWLLWFTFPLALIWFASCLAETNRTPFDFAEGESELVSGFNTEYSSGGFALIFMAEYASILFMSMLFA 242
Cdd:MTH00134 166 FTLQTFNTAQESIWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSA 245

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 813424645 243 LIFLGGNLISPFYYL-------KLVMVAFAFVWVRGTLPRFRYDKLMYLAWKSFLPVAL 294
Cdd:MTH00134 246 ILFLGASHIPTLPELttinlmtKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLTL 304
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 7-294 1.76e-113

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 330.82  E-value: 1.76e-113
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645   7 INYLLLIICVLVGVAFVTLLERKILGYIQIRKGPNKVGFMGLLQPFADAVKLFTKEQTLPVMSNFLPYYLSPVFSLFVSL 86
Cdd:MTH00104   4 INILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALTLAL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645  87 IVWLVMPYELGLMNFSMSTLFFLCCTSLGVYTTMSAGWASNSKYSLLGSLRAVAQTISYEVSLALILLSFIFLVGGFDLT 166
Cdd:MTH00104  84 TMWIPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSFTLS 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645 167 LFSLYQRDVWLLWFTFPLALIWFASCLAETNRTPFDFAEGESELVSGFNTEYSSGGFALIFMAEYASILFMSMLFALIFL 246
Cdd:MTH00104 164 TLITTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTILFL 243

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 813424645 247 GG--NLISPFYY-----LKLVMVAFAFVWVRGTLPRFRYDKLMYLAWKSFLPVAL 294
Cdd:MTH00104 244 GAfhNPYMPELYttnftIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTL 298
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
 1-310 9.48e-113

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 329.24  E-value: 9.48e-113
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645   1 MTLIMVINYLLLIICVLVGVAFVTLLERKILGYIQIRKGPNKVGFMGLLQPFADAVKLFTKEQTLPVMSNFLPYYLSPVF 80
Cdd:MTH00040   2 SVILFLINLLSFIVPVLLAVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSPVL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645  81 SLFVSLIVWLVMPYELGLMNFSMSTLFFLCCTSLGVYTTMSAGWASNSKYSLLGSLRAVAQTISYEVSLALILLSFIFLV 160
Cdd:MTH00040  82 FLFLALLLWSLIPVPTPTLNVNLSLLLVLGLSSLSVYALLGSGWASNSKYSLLGAIRAVAQTISYEISLGLILLSLVIFS 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645 161 GGFDLTLFSLYQRDVWLLWFTFPLALIWFASCLAETNRTPFDFAEGESELVSGFNTEYSSGGFALIFMAEYASILFMSML 240
Cdd:MTH00040 162 GSFSLSSISNSQNGSWLLFPCLPLFYIWFISTLAETNRAPFDLTEGESELVSGYNVEYAGGPFALFFIAEYANIIFMNLL 241

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 813424645 241 FALIFLGGNL-ISPFYYLKLVMVA-------FAFVWVRGTLPRFRYDKLMYLAWKSFLPVALNYLVFFMGVKSICFIY 310
Cdd:MTH00040 242 SVILFLGGGSpFNEIFPINIIIVGikttflvFLFLWVRASYPRFRYDQLMFLTWKNYLPLSIGLLIFYLLLLSLLNIL 319
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
 3-299 1.11e-112

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 328.24  E-value: 1.11e-112
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645   3 LIMVINYLLLIICVLVGVAFVTLLERKILGYIQIRKGPNKVGFMGLLQPFADAVKLFTKEQTLPVMSNFLPYYLSPVFSL 82
Cdd:MTH00195   2 MISVIHFLIQIVPVLLAVAFFTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVLAL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645  83 FVSLIVWLVMPYELGLMNFSMSTLFFLCCTSLGVYTTMSAGWASNSKYSLLGSLRAVAQTISYEVSLALILLSFIFLVGG 162
Cdd:MTH00195  82 ALALILWVPIPSPFGFSSINLSVLFFLCVSSLSVYSILGSGWASNSKYALLGAIRAVAQTISYEVSMGLIILCPICLAGS 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645 163 FDLTLFSLYQRDVWLLWFTFPLALIWFASCLAETNRTPFDFAEGESELVSGFNTEYSSGGFALIFMAEYASILFMSMLFA 242
Cdd:MTH00195 162 FDFTIMVISQGFSWVILLCPPISFMWYVSTLAETNRAPFDFAEGESELVSGFNVEYAGGPFALIFMAEYSNIIFMSVLTT 241

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 813424645 243 LIFLGGNLIsPFYYLKLVMVAFAFVWVRGTLPRFRYDKLMYLAWKSFLPVALNYLVF 299
Cdd:MTH00195 242 ILFLGGGGT-IIVALKSLFLSFCFLWVRGSLPRFRYDQLMHLTWKCYLPLILSLLIP 297
NADHdh pfam00146
NADH dehydrogenase;
10-299 9.01e-106

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 310.56  E-value: 9.01e-106
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645   10 LLLIICVLVGVAFVTLLERKILGYIQIRKGPNKVGFMGLLQPFADAVKLFTKEQTLPVMSNFLPYYLSPVFSLFVSLIVW 89
Cdd:pfam00146   3 LLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645   90 LVMPY--ELGLMNFSMSTLFFLCCTSLGVYTTMSAGWASNSKYSLLGSLRAVAQTISYEVSLALILLSFIFLVGGFDLTL 167
Cdd:pfam00146  83 AVIPFgpGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645  168 FSLYQRDVWLLWFTFPLALIWFASCLAETNRTPFDFAEGESELVSGFNTEYSSGGFALIFMAEYASILFMSMLFALIFLG 247
Cdd:pfam00146 163 IVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLG 242

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 813424645  248 GNLiSPF-------YYLKLVMVAFAFVWVRGTLPRFRYDKLMYLAWKSFLPVALNYLVF 299
Cdd:pfam00146 243 GWL-GPFplpgllwFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
 1-301 1.44e-104

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 307.86  E-value: 1.44e-104
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645   1 MTLIMVINYLLLIICVLVGVAFVTLLERKILGYIQIRKGPNKVGFMGLLQPFADAVKLFTKEQTLPVMSNFLPYYLSPVF 80
Cdd:MTH00010   1 MNISFFISILLSYVMALLAMAFYTLLERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKEQTKPSPANITPFLGAPMM 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645  81 SLFVSLIVWLVMPYELGLMNFSMSTLFFLCCTSLGVYTTMSAGWASNSKYSLLGSLRAVAQTISYEVSLALILLSFIFLV 160
Cdd:MTH00010  81 SLILALLLWSLYPHKHPSFFLKFSILLFLCVSSMNVYTTLGAGWTSNSKYALLGALRSVAQTISYEVSMSLILLSALLIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645 161 GGFDLTLFsLYQRDVWLLWFTFPLALIWFASCLAETNRTPFDFAEGESELVSGFNTEYSSGGFALIFMAEYASILFMSML 240
Cdd:MTH00010 161 QTFSFSKI-IMSQYSWILLMIIPLTVSWFITNLAETNRTPFDFAEGESELVSGFNVEYSSGLFALIFMAEYANILIMSLF 239

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 813424645 241 FALIFLG----GNLISPFYYLKLVMVAFAFVWVRGTLPRFRYDKLMYLAWKSFLPVALNYLVFFM 301
Cdd:MTH00010 240 TSVFFTSfipsIFISDLMLILKTVFLAFLFIWIRATFPRMRYDRLMNLTWKSFLPMSLTSLMISI 304
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 3-299 1.55e-99

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 295.50  E-value: 1.55e-99
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645   3 LIMVINYLLLIICVLVGVAFVTLLERKILGYIQIRKGPNKVGFMGLLQPFADAVKLFTKEQTLPVMSNFLPYYLSPVFSL 82
Cdd:COG1005    9 LITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAF 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645  83 FVSLIVWLVMPY--ELGLMNFSMSTLFFLCCTSLGVYTTMSAGWASNSKYSLLGSLRAVAQTISYEVSLALILLSFIFLV 160
Cdd:COG1005   89 IPALLAFAVIPFgpGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLLA 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645 161 GGFDLTLFSLYQRD-VWLLWFTFPLALIWFASCLAETNRTPFDFAEGESELVSGFNTEYSSGGFALIFMAEYASILFMSM 239
Cdd:COG1005  169 GSLNLSEIVEAQAGgLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLVSA 248

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 813424645 240 LFALIFLGG-----------NLISPFYY-LKLVMVAFAFVWVRGTLPRFRYDKLMYLAWKSFLPVALNYLVF 299
Cdd:COG1005  249 LATTLFLGGwlgpfpilplgGLPGILWFlLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLVNLVL 320
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
 3-303 1.08e-94

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 283.16  E-value: 1.08e-94
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645   3 LIMVINYLLLIICVLVGVAFVTLLERKILGYIQIRKGPNKVGFMGLLQPFADAVKLFTKEQTLPVMSNFLPYYLSPVFSL 82
Cdd:MTH00054   2 GIIIIKILAILVPLLISIAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIPNHANIFIYIMAPILSL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645  83 FVSLIVWLVMPYELG--LMNFSMSTLFFLCCTSLGVYTTMSAGWASNSKYSLLGSLRAVAQTISYEVSLALILLSFIFLV 160
Cdd:MTH00054  82 TLAFIAWGVIPYGEGvvLSDLGIGILYLFAVSSISVYAVLMSGWSSNSKYAFLGAIRAAAQMISYEVSIGLIIISVVLCV 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645 161 GGFDLTLFSLYQRDVWLLWFTFPLALIWFASCLAETNRTPFDFAEGESELVSGFNTEYSSGGFALIFMAEYASILFMSML 240
Cdd:MTH00054 162 GSLNLTEIVLAQKNIWFIFPLFPAAIMFFVSALAETNRVPFDLTEGESELVSGFNVEYSSMSFALFFLAEYCHIILMSTF 241

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 813424645 241 FALIFLGGNLI----------SPFYYLKLVMVAFAFVWVRGTLPRFRYDKLMYLAWKSFLPVALNYLVFFMGV 303
Cdd:MTH00054 242 GVILFLGGWLVisgptsyfsnFVWFGIKIALIIFLFIWIRASYPRIRYDQLMALLWKSYLPLSLAFVVLVSGI 314
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
 2-303 6.85e-93

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 278.93  E-value: 6.85e-93
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645   2 TLIMVINYLLLIICVLVGVAFVTLLERKILGYIQIRKGPNKVGFMGLLQPFADAVKLFTKEQTLPVMSNFLPYYLSPVFS 81
Cdd:MTH00216   5 IIFYLIKILIIIVPLLIAVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVAPVLS 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645  82 LFVSLIVWLVMPYELGLM--NFSMSTLFFLCCTSLGVYTTMSAGWASNSKYSLLGSLRAVAQTISYEVSLALILLSFIFL 159
Cdd:MTH00216  85 FTLALIVWGVIPYERGVLisDFKIGILYILAISSISVYAILMSGWGSNSKYAFLGAIRAAAQMISYEVSIGLIIISVLLC 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645 160 VGGFDLTLFSLYQRD-VWLLWFTFPLALIWFASCLAETNRTPFDFAEGESELVSGFNTEYSSGGFALIFMAEYASILFMS 238
Cdd:MTH00216 165 VGSLSITEIVLAQNNgIWFFFPLFPVAIMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFALFFLAEYAHIILMS 244

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 813424645 239 MLFALIFLGGNLISPFYY--------LKLVMVAFAFVWVRGTLPRFRYDKLMYLAWKSFLPVALNYLVFFMGV 303
Cdd:MTH00216 245 CLTTILFLGGWLSPIKYFkggagwfgLKVVFIIFLFIWVRASFPRIRYDQLMALLWKSYLPLSLGVVIFVASV 317
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
3-299 5.79e-92

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 276.30  E-value: 5.79e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645   3 LIMVINYLLLIICVLVGVAFVTLLERKILGYIQIRKGPNKVGFMGLLQPFADAVKLFTKEQTLPVMSNFLPYYLSPVFSL 82
Cdd:PRK06076  10 LLILLKAVVILVVVLLCVAFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFLLAPVIAF 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645  83 FVSLIVWLVMPY--ELGLMNFSMSTLFFLCCTSLGVYTTMSAGWASNSKYSLLGSLRAVAQTISYEVSLALILLSFIFLV 160
Cdd:PRK06076  90 IPAFLAWAVIPFgpELVIADLNVGILYILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLA 169

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645 161 GGFDLTLFSLYQRDVWLLWFTFPLALIWFASCLAETNRTPFDFAEGESELVSGFNTEYSSGGFALIFMAEYASILFMSML 240
Cdd:PRK06076 170 GSLNLSDIVEAQFLSWNIIPQPPAFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGMKFGLFFLGEYINMILVSAL 249

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 813424645 241 FALIFLGG--------NLISPF--YYLKLVMVAFAFVWVRGTLPRFRYDKLMYLAWKSFLPVALNYLVF 299
Cdd:PRK06076 250 ITTLFLGGwlppfplgGGIPGAiwFVLKVAFFVFLFIWLRATLPRYRYDQLMRLGWKVLLPLSLVNLLL 318
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
 3-303 9.67e-74

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 230.29  E-value: 9.67e-74
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645   3 LIMVINYLLLIICVLVGVAFVTLLERKILGYIQIRKGPNKVGFMGLLQPFADAVKLFTKEQTLPVMSNFLPYYLSPVFSL 82
Cdd:MTH00029   7 ITVTIKLLIIFVPLLLSVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYIAPIISF 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645  83 FVSLIVWLVMPYELG--LMNFSMSTLFFLCCTSLGVYTTMSAGWASNSKYSLLGSLRAVAQTISYEVSLALILLSFIFLV 160
Cdd:MTH00029  87 TLAILAWAIVTMDQGvfLSDLDVGVLYFLAISSLSVYAILLSGWASNSRYPFLGAIRCAAQMISYEVAIGLIIISVILCV 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645 161 GGFDLTLFSLYQRDVWLLWFTFPLALIWFASCLAETNRTPFDFAEGESELVSGFNTEYSSGGFALIFMAEYASILFMSML 240
Cdd:MTH00029 167 GSLNISEIVISQRSVWLIIPLFPAAIMFMVASLAETARAPFDLTEGESELVSGFNVEYSSLSFALFFLAEYSNIILMSCM 246

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645 241 FALIFLGGNLiSPFYYLKLVMVAFA------------------------FVWVRGTLPRFRYDKLMYLAWKSFLPVALNY 296
Cdd:MTH00029 247 MTIFFLGGWL-SPLDGIPTPPEAFSifeqiasskssfwfftkssifilfFIWSRASFPRIRYDQLMKLLWKTYLPLSLGL 325


                 ....*..
gi 813424645 297 LVFFMGV 303
Cdd:MTH00029 326 VILTAGI 332
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
 10-304 1.18e-69

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 217.84  E-value: 1.18e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645  10 LLLIICVLVGVAFVTLLERKILGYIQIRKGPNKVGFMGLLQPFADAVKLFTKEQTLPVMSNFLPYYLSPVFSLFVSLIVW 89
Cdd:MTH00090   3 LLMMIFILQAIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYLEW 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645  90 LVMPYELGLMNFSMSTLFFLCCTSLGVYTTMSAGWASNSKYSLLGSLRAVAQTISYEVSLALILLSFIFLVGGFDLTLFs 169
Cdd:MTH00090  83 FVLPYFFDFLSFEYSLLFFLCLIGFSVYTTLISGIVSKSKYGFLGALRASSQSISYEIAFSLYLLSIMLHNNSFSFVSS- 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645 170 lyqrdvwLLWFTFPLALIWFASCLAETNRTPFDFAEGESELVSGFNTEYSSGGFALIFMAEYASILFMSMLFALIFLGgn 249
Cdd:MTH00090 162 -------FSLSLFVIYLPFLIMIIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSLIFFSVLTSVLFFK-- 232

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 813424645 250 lispFYYLKLVMVAFAFVWVRGTLPRFRYDKLMYLAWKSFLPVALNYLVFFMGVK 304
Cdd:MTH00090 233 ----FSFLMLFLIFSLLIFIRSSYPRFRYDMMMSMFWFKFLPLSLIFLGFFVVLF 283
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
 14-300 8.12e-54

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 177.42  E-value: 8.12e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645  14 ICVLVGVAFVTLLERKILGYIQIRKGPNKVGFMGLLQPFADAVKLFTKeqtlpvmSNFLPYYLSPVFSLF-VSLIVWLVM 92
Cdd:MTH00058  12 LIILLLVAFFILGERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVK-------FKVYGFQSRSWFSLFgVFLLVLLVV 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645  93 PYEL------GLMNFSMSTLFFLCCTSLGVYTTMSAGWASNSKYSLLGSLRAVAQTISYEVSLALILLSFIFLVGGFDLT 166
Cdd:MTH00058  85 FYCFiygsyySGSYSSLSLLWFLVVTSFSSYSLLCVGWGSYNKYSLLSSIRSAFGSVSFEACFMCIVIFCGLCYGSYSLV 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645 167 LFSLyqrDVWLLWFTFPLALI-WFASCLAETNRTPFDFAEGESELVSGFNTEYSSGGFALIFMAEYASILFMSMLFALIF 245
Cdd:MTH00058 165 DFYY---SGWLSVLLFPLIYIlWLVCILCETNRTPFDYGESESELVSGFNTEYSGIYFTCLFACEYLIIFIFSWLGSVLF 241

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 813424645 246 LGGNlispFYYLKLVMVAFAFVWVRGTLPRFRYDKLMYLAWKSFLPVALNYLVFF 300
Cdd:MTH00058 242 FGGG----FVSIMLLFHLLFFMWARATLPRVRYDYFVNFFWEYCLVLLILSLFVI 292
ndhA CHL00032
NADH dehydrogenase subunit 1
 5-297 6.44e-44

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 153.57  E-value: 6.44e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645   5 MVINYLLLIICVLVGVAFVTLLERKILGYIQIRKGPNKVGFMGLLQPFADAVKLFTKEQTLPVMSNFLPYYLSPVFSLFV 84
Cdd:CHL00032  29 ILVPILTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGDIRLFSIGPSIAVIS 108

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645  85 SLIVWLVMP--YELGLMNFSMSTLFFLCCTSLGVYTTMSAGWASNSKYSLLGSLRAVAQTISYEVSLALILLSFIFLVGg 162
Cdd:CHL00032 109 ILLSYLVIPfgYHLVLADLSIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLLSN- 187

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645 163 fdltlfSLYQRDV-----------WLLWFTFPLALIWFASCLAETNRTPFDFAEGESELVSGFNTEYSSGGFALIFMAEY 231
Cdd:CHL00032 188 ------SLSTVDIveaqskygfwgWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASY 261

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645 232 ASILFMSMLFALIFLGG-NLISPFYYL------------------------KLVMVAFAFVWVRGTLPRFRYDKLMYLAW 286
Cdd:CHL00032 262 LNLLVSSLFVTVLYLGGwNLSIPYIFIpelfeinktggvfgttigifitlaKTYLFLFISITTRWTLPRLRMDQLLNLGW 341

                        330
                 ....*....|.
gi 813424645 287 KSFLPVALNYL 297
Cdd:CHL00032 342 KFLLPISLGNL 352
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
3-301 4.30e-31

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 118.36  E-value: 4.30e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645   3 LIMVINYLLLIICVLVGVAFVTLLERKILGYIQIRKGPnkvgfmGLLQPFADAVKLFTKEQTLPVMSNFLpYYLSPVFSL 82
Cdd:COG0650    1 MMLILLALLQLLLALLLAPLLLGIIRKVKARLQGRRGP------PILQPYYDLLKLLRKETVVPETASWL-FRAAPYVAL 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645  83 FVSLIVWLVMP--YELGLMNFSMSTLFFLCCTSLGVYTTMSAGWASNSKYSLLGSLRAVAQTISYEVSLALILLSFIFLV 160
Cdd:COG0650   74 AAMLLAALLVPvlTTGPPLSFSGDLIVLVYLLALARFFLALAGLDSGSPFGGIGASREMTLSALAEPPLLLVLFALALLA 153

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645 161 GGFDLTLFSLYQRD--VWLLWFTFPLALI-WFASCLAETNRTPFDFAEGESELVSGFNTEYSSGGFALIFMAEYASILFM 237
Cdd:COG0650  154 GSTSLSDIVAYQAAhgPLLLSPSLLLAAIaFFIVLLAETGRIPFDIPETHLELHEGMLLEYSGRHLALLELAAALKLFVL 233

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 813424645 238 SMLFALIFLGGNLISP------FYYLKLVMVAFAFVWVRGTLPRFRYDKLMYLAWKSFLPVALNYLVFFM 301
Cdd:COG0650  234 LSLFVNLFLPWGIALTlllallLFLLKLLVLAVLLAVIEASTARLRLFRVPDFLWTAFLLALLALLLAVL 303
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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