|
Name |
Accession |
Description |
Interval |
E-value |
| PACT_coil_coil |
pfam10495 |
Pericentrin-AKAP-450 domain of centrosomal targeting protein; This domain is a coiled-coil ... |
3139-3216 |
3.35e-27 |
|
Pericentrin-AKAP-450 domain of centrosomal targeting protein; This domain is a coiled-coil region close to the C-terminus of centrosomal proteins that is directly responsible for recruiting AKAP-450 and pericentrin to the centrosome. Hence the suggested name for this region is a PACT domain (pericentrin-AKAP-450 centrosomal targeting). This domain is also present at the C-terminus of coiled-coil proteins from Drosophila and S. pombe, and that from the Drosophila protein is sufficient for targeting to the centrosome in mammalian cells. The function of these proteins is unknown but they seem good candidates for having a centrosomal or spindle pole body location. The final 22 residues of this domain in AKAP-450 appear specifically to be a calmodulin-binding domain indicating that this member at least is likely to contribute to centrosome assembly.
Pssm-ID: 463115 Cd Length: 77 Bit Score: 106.91 E-value: 3.35e-27
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 81295809 3139 YLRAESFRKALIYQKKYLLLLIGGFQDSEQETLSMIAHLGVFPSKAERKitSRPFTRFRTAVRVVIAILRLRFLVKKW 3216
Cdd:pfam10495 2 LLREESFRKDLAYQKKYLLLLLGGYQACNKADLRLLAQMGVTPPDDRPS--RKPRRKLKSAALAVIAIARMKRLAREW 77
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1438-1960 |
3.71e-19 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 95.77 E-value: 3.71e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1438 ILESELEEQLSQHRGCAKQAEAVTALEQQVASLDKHLR-NQRQFMDEQAAEREHEREEFQQEIQRLEGQLRQaakpqpwg 1516
Cdd:COG1196 193 DILGELERQLEPLERQAEKAERYRELKEELKELEAELLlLKLRELEAELEELEAELEELEAELEELEAELAE-------- 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1517 prdsqqapLDGEVELLQQKLREKLDEFNELAIQKESADRQVLMQEEEIKRLEEMNINIRKKVAQLQEEVEKQKNIVKGLE 1596
Cdd:COG1196 265 --------LEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELE 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1597 QDKEVLKKQQMSSLLLASTLQSTLDAGRCPEPPSGSPPEGPEIQLEVTQRALLRRESEVLDLKEQLEKMKGDLESKNEEI 1676
Cdd:COG1196 337 EELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERL 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1677 LHLNLKLDMQNSQTAVSLRELEEENTSLKviyTRSSEIEELKATIENLQENQKRLQKEKAEEIEQLHEVIEKLQHELSLm 1756
Cdd:COG1196 417 ERLEEELEELEEALAELEEEEEEEEEALE---EAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAAR- 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1757 GPVVHEVSDSQAGSLQSELLCSQAGGPRGQALQG--------ELEAALEAKEA--LSRLLADQERRHSQALEALQQRLQG 1826
Cdd:COG1196 493 LLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVavligveaAYEAALEAALAaaLQNIVVEDDEVAAAAIEYLKAAKAG 572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1827 AEEAAEL------QLAELERNVALREAEVEDMASRIQEFEAALKAKEATIAERNLEIDALNQRKAAHSAELEAVLLALAR 1900
Cdd:COG1196 573 RATFLPLdkirarAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLE 652
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1901 IRRALEQQPLAAGAAPPELQWLRAQCARLSRQLQVLHQRFLRCQVELDRRQARRATAHTR 1960
Cdd:COG1196 653 GEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEA 712
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1394-1936 |
3.84e-17 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 89.23 E-value: 3.84e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1394 EATATDAEAREAALRKEVEDLTKEQSETRKQAEKDRSALLSqmkiLESELEEQLSQHRGCAKQAEAVTALEQQVASLDKH 1473
Cdd:COG1196 238 EAELEELEAELEELEAELEELEAELAELEAELEELRLELEE----LELELEEAQAEEYELLAELARLEQDIARLEERRRE 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1474 LRNQRQFMDEQAAEREHEREEFQQEIQRLEGQLRQAAKPQpwgpRDSQQAPLDGEVEL--LQQKLREKLDEFNELAIQKE 1551
Cdd:COG1196 314 LEERLEELEEELAELEEELEELEEELEELEEELEEAEEEL----EEAEAELAEAEEALleAEAELAEAEEELEELAEELL 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1552 SADRQVLMQEEEIKRLEEMNINIRKKVAQLQEEVEKQKNIVKGLEQDKEVLKKQQMSSLLLASTLQSTLDAGRCPEPPSG 1631
Cdd:COG1196 390 EALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELL 469
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1632 SPPEGPEIQLEVTQRALLRRESEVLDLKEQLEKMKGDLESKNEEILHLNLKLDMQ----NSQTAVSLRELEEENTSLKVI 1707
Cdd:COG1196 470 EEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGavavLIGVEAAYEAALEAALAAALQ 549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1708 YTRSSEIEELKATIENLQENQK-RLQKEKAEEIEQLHEVIEKLQHELSLMGPVVHEVSDSQAGSLQSELLCSQAGGPRGQ 1786
Cdd:COG1196 550 NIVVEDDEVAAAAIEYLKAAKAgRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVA 629
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1787 ALQGELEAALEAKEALSRLLADQERRHSQALEALQQRLQGAEEAAELQLAELERNVALREAEVEDMASRIQEFEAALKAK 1866
Cdd:COG1196 630 ARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEEREL 709
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1867 EATIAERNLEIDALNQRKAAHSAELEAVLLALARIRRALEQQPLAAGAAPPELQWLRAQCARLSRQLQVL 1936
Cdd:COG1196 710 AEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
269-828 |
3.56e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 85.76 E-value: 3.56e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 269 LQKEKETAL--TELREMLNSRRAQELALLQSRQQHELELLREQHAREKEEV------VLRCGQEAAELKEKLQSEM---- 336
Cdd:COG1196 205 LERQAEKAEryRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELeeleaeLAELEAELEELRLELEELElele 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 337 EKNAQIVKTLKEDWESEKDLCLENLRKELSAKHQSEMEDLQNQFQKELAEQRAELEKIFQDKNQAERALRNLESHHQAAI 416
Cdd:COG1196 285 EAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAE 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 417 EKLREDLQSEHGRclEDLEFKFKESEKEKQLELENLQASYEDLKAQSQEEIRRLWSQLDSARTSRQELSELHEQLLARTS 496
Cdd:COG1196 365 EALLEAEAELAEA--EEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEE 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 497 RVEDLEQLKQREKTQHESELEQLRIYFEKKLRDAEKTYQEDLTLLQQRLQGAREDALLDSVEVGLSCVGLEEKPEKGRKD 576
Cdd:COG1196 443 ALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGL 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 577 HVDELEPERHKESLPRFQAELEESHRHQLEALESPLCIQHEGHVSDRCCVETSALGHEWRLEPSEGHSQELPWVHLQGVQ 656
Cdd:COG1196 523 AGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVD 602
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 657 DGDLEADTERA-ARVLGLETEHKVQLSLLQTELKEEIELLKIENRNLYGKLQHETRLKDDLE-KVKHNLIEDHQKELNNA 734
Cdd:COG1196 603 LVASDLREADArYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGgSRRELLAALLEAEAELE 682
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 735 KQKTELMKQEFQRKETDWKVMKEELQREAEEKLTLMLLELREKAESEKQTIINKFELREAEMRQLQDQQAAQILDLERSL 814
Cdd:COG1196 683 ELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDL 762
|
570
....*....|....
gi 81295809 815 TEQQGRLQQLEQDL 828
Cdd:COG1196 763 EELERELERLEREI 776
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
246-1035 |
7.65e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 85.11 E-value: 7.65e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 246 ELEALRLSLSNM------HTAQLELTQANLQkEKETALTELREMLNsrRAQELALLQSRQQHELELlREQHAREKEEVVL 319
Cdd:TIGR02168 240 ELEELQEELKEAeeeleeLTAELQELEEKLE-ELRLEVSELEEEIE--ELQKELYALANEISRLEQ-QKQILRERLANLE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 320 RCGQEAAELKEKLQSEMEKNAQIVKTLKEDWESEKDlCLENLRKELSAKH--QSEMEDLQNQFQKELAEQRAELEKIFQD 397
Cdd:TIGR02168 316 RQLEELEAQLEELESKLDELAEELAELEEKLEELKE-ELESLEAELEELEaeLEELESRLEELEEQLETLRSKVAQLELQ 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 398 KNQAERALRNLESHhQAAIEKLREDLQSEhgrcLEDLEFKFKESEKEK-QLELENLQASYEDLKAQSQEEIRRLWSQLDS 476
Cdd:TIGR02168 395 IASLNNEIERLEAR-LERLEDRRERLQQE----IEELLKKLEEAELKElQAELEELEEELEELQEELERLEEALEELREE 469
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 477 ARTSRQELSELHEQLLARTSRVEDLEQLKQREKTQHESELEQL---------------RIYFEKKLRDAEKTYqedltll 541
Cdd:TIGR02168 470 LEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLknqsglsgilgvlseLISVDEGYEAAIEAA------- 542
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 542 qqrLQGAREDALLDSVEVGLSCVGLEEKPEKGRkdhVDELEPERHKESLPRF-QAELEESHRHQLEALESPLCIQHEGHV 620
Cdd:TIGR02168 543 ---LGGRLQAVVVENLNAAKKAIAFLKQNELGR---VTFLPLDSIKGTEIQGnDREILKNIEGFLGVAKDLVKFDPKLRK 616
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 621 S-----DRCCVETS---------ALGHEWRLEPSEGHsqelpWVHLQGVQDGdleADTERAARVLGLETEHKvQLSLLQT 686
Cdd:TIGR02168 617 AlsyllGGVLVVDDldnalelakKLRPGYRIVTLDGD-----LVRPGGVITG---GSAKTNSSILERRREIE-ELEEKIE 687
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 687 ELKEEIELLKIENRNLYGKLQhetRLKDDLEKVKhNLIEDHQKELNNAKQKTELMKQEFQRKETDWKVMKEELQREAEEK 766
Cdd:TIGR02168 688 ELEEKIAELEKALAELRKELE---ELEEELEQLR-KELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEI 763
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 767 LTlmLLELREKAESEKQTIINKFELREAEMRQLQDQQAAqildLERSLTEQQGRLQQLEQDLTSddalhcsqcgreppta 846
Cdd:TIGR02168 764 EE--LEERLEEAEEELAEAEAEIEELEAQIEQLKEELKA----LREALDELRAELTLLNEEAAN---------------- 821
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 847 qdgelaalhvkedcaLQLMLARSRFLEERKEITEKFSAEQDAFLQEAQEQHARELQLLQerhqqqllsvtaELEARHQAA 926
Cdd:TIGR02168 822 ---------------LRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELE------------ELIEELESE 874
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 927 LGELTASLESKQGALLAARvaELQTKHAADLGALETRHLSSLDSLESCylsefQTIREEHRQALELLRADFEEQLWKKDS 1006
Cdd:TIGR02168 875 LEALLNERASLEEALALLR--SELEELSEELRELESKRSELRRELEEL-----REKLAQLELRLEGLEVRIDNLQERLSE 947
|
810 820
....*....|....*....|....*....
gi 81295809 1007 LHQTILtQELEKLKRKHEGELQSVRDHLR 1035
Cdd:TIGR02168 948 EYSLTL-EEAEALENKIEDDEEEARRRLK 975
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1280-1957 |
8.62e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 81.64 E-value: 8.62e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1280 QLEEARQIHSRFEKEFSFKNEETAQVVRKHQELLECLKEESAAKAELALELHKTQGTLEGFKVETADLKEVLAGKEDSEH 1359
Cdd:TIGR02168 233 RLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLA 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1360 RLVLELESLRRQLQqaaqeqaalreectrlwsRGEATATDAEAREAALRKEVEDLTKEQSETRKQAEKDRsALLSQMKIL 1439
Cdd:TIGR02168 313 NLERQLEELEAQLE------------------ELESKLDELAEELAELEEKLEELKEELESLEAELEELE-AELEELESR 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1440 ESELEEQLSQhrgcakQAEAVTALEQQVASldkhLRNQRQFMDEQAAEREHEREEFQQEIQRLEGQLRQAAKP---QPWG 1516
Cdd:TIGR02168 374 LEELEEQLET------LRSKVAQLELQIAS----LNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKelqAELE 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1517 PRDSQQAPLDGEVELLQQKLREKLDEFNElaiqKESADRQVLMQEEEIKRLEEMNINIRKKVAQLQEEVEKQKNIVKGLE 1596
Cdd:TIGR02168 444 ELEEELEELQEELERLEEALEELREELEE----AEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLS 519
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1597 QDKEVLKKQ--------QMSSLLLASTLQSTL-----------------DAGRCPEPPSGSPPEGpeiQLEVTQRALLRR 1651
Cdd:TIGR02168 520 GILGVLSELisvdegyeAAIEAALGGRLQAVVvenlnaakkaiaflkqnELGRVTFLPLDSIKGT---EIQGNDREILKN 596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1652 ESEVLDLKEQLEKMKGDLESKNEEILHLNLKLDmqNSQTAVSLRELEEENTSL-----------KVIYTRSSE----IEE 1716
Cdd:TIGR02168 597 IEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVD--DLDNALELAKKLRPGYRIvtldgdlvrpgGVITGGSAKtnssILE 674
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1717 LKATIENLQENQKRLQkekaEEIEQLHEVIEKLQHELSlmgpvvhevsdsqagSLQSELLCSQAGGPRGQALQGELEAAL 1796
Cdd:TIGR02168 675 RRREIEELEEKIEELE----EKIAELEKALAELRKELE---------------ELEEELEQLRKELEELSRQISALRKDL 735
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1797 EAKEALSRLLADQERRHSQALEALQQRLQGAEEA---AELQLAELERNVALREAEVEDMASRIQEFEAALKAKEATIAER 1873
Cdd:TIGR02168 736 ARLEAEVEQLEERIAQLSKELTELEAEIEELEERleeAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLL 815
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1874 NLEIDALNQRKAAHSAELEAVLLALARIRRALEQQPLAAGAAPPELQWLRAQCARLSRQLQVLHQRFLRCQVELDRRQAR 1953
Cdd:TIGR02168 816 NEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSE 895
|
....
gi 81295809 1954 RATA 1957
Cdd:TIGR02168 896 LEEL 899
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2488-2990 |
1.85e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 80.37 E-value: 1.85e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2488 LERLEKIIREQgdlqEKSLEHLRLpDRS------SLLSEIQALRAQLRMTHLQN-QEKLQHLRTALTSAEArgsqQEHQL 2560
Cdd:COG1196 188 LERLEDILGEL----ERQLEPLER-QAEkaeryrELKEELKELEAELLLLKLRElEAELEELEAELEELEA----ELEEL 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2561 RRQVELLAYKVEQekciagdLQKTLSEEQEKANSVQKLLAAEQTVVRDLKSDLCESRQKSEQLSRSLCEVQQEVLQLRSM 2640
Cdd:COG1196 259 EAELAELEAELEE-------LRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEE 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2641 LSSKENELKAALQELESEQGKGRALQSQLEEEQLRHLQRESQSAKALEELRASLETQRAQSSRLCVA---LKHEQTAKDN 2717
Cdd:COG1196 332 LEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELaaqLEELEEAEEA 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2718 LQKELRIEHSRCEALLAQERSQLSELQKDLAAEKSRTLELSEALRHERLLTEQLSQRTQEAcvHQDTQAHHALLQKLKEE 2797
Cdd:COG1196 412 LLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEA--ALLEAALAELLEELAEA 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2798 KSRVVDLQAMLEKVQQQALHSQQQLEAEAQKHC-----EALRREKEVSATLKSTVEALHTQ---KRELRCSLEREREKPA 2869
Cdd:COG1196 490 AARLLLLLEAEADYEGFLEGVKAALLLAGLRGLagavaVLIGVEAAYEAALEAALAAALQNivvEDDEVAAAAIEYLKAA 569
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2870 WLQAELEQSHPRLKEQEGRKAARRSAEARQSPAAAEQWRKWQRDKEKLRELEL------QRQRDLHKIKQLQQTVRDLES 2943
Cdd:COG1196 570 KAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLlgrtlvAARLEAALRRAVTLAGRLREV 649
|
490 500 510 520
....*....|....*....|....*....|....*....|....*..
gi 81295809 2944 KDEVPGSRLHLGSARRAAGSDADHLREQQRELEAMRQRLLSAARLLT 2990
Cdd:COG1196 650 TLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELE 696
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1290-1964 |
3.16e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 79.72 E-value: 3.16e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1290 RFEKEFSFKNEETAQVVRKHQELLECLKEESAAKAELALELHKTQGTLEgfkVETADLKEVLAGKEDSEHRLVLELESLR 1369
Cdd:TIGR02168 236 ELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIE---ELQKELYALANEISRLEQQKQILRERLA 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1370 RQLQQAAQEQAALREEctrlwsrgEATATDAEAREAALRKEVEDLTKEQSETRKQAEKDRsALLSQMKILESELEEQLSQ 1449
Cdd:TIGR02168 313 NLERQLEELEAQLEEL--------ESKLDELAEELAELEEKLEELKEELESLEAELEELE-AELEELESRLEELEEQLET 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1450 hrgcakQAEAVTALEQQVASLdkhlRNQRQFMDEQAAEREHEREEFQQEIQRLEGQLRQAAKP---QPWGPRDSQQAPLD 1526
Cdd:TIGR02168 384 ------LRSKVAQLELQIASL----NNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKelqAELEELEEELEELQ 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1527 GEVELLQQKLREKLDEFNElaiqKESADRQVLMQEEEIKRLEEMNINIRKKVAQLQEEVEKQKNIVKGLEQDKEVLKKQ- 1605
Cdd:TIGR02168 454 EELERLEEALEELREELEE----AEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELi 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1606 -------QMSSLLLASTLQSTL-----------------DAGRCPEPPSGSPPEGpeiQLEVTQRALLRRESEVLDLKEQ 1661
Cdd:TIGR02168 530 svdegyeAAIEAALGGRLQAVVvenlnaakkaiaflkqnELGRVTFLPLDSIKGT---EIQGNDREILKNIEGFLGVAKD 606
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1662 LEKMKGDLESKNEEILHLNLKLDmqNSQTAVSLRELEEENTSL----------------------KVIYTRSSEIEELKA 1719
Cdd:TIGR02168 607 LVKFDPKLRKALSYLLGGVLVVD--DLDNALELAKKLRPGYRIvtldgdlvrpggvitggsaktnSSILERRREIEELEE 684
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1720 TIEnLQENQKRLQKEKAEEIEQLHEVIEKLQHELSLMGPVVHEVSDSQAGSLQSELLCSQAGGPRGQALQGELEAALEAK 1799
Cdd:TIGR02168 685 KIE-ELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEI 763
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1800 EAL------SRLLADQERRHSQALEALQQRLQGAEEAAELQLAELERNVALREAEVEDMASRIQEFEAALKAKEATIAER 1873
Cdd:TIGR02168 764 EELeerleeAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDL 843
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1874 NLEIDALNQRKAAHSAELEAVLLALARIRRALEQQPLAAGAAPPELQWLRAQCARLSRQLQVLHQRFLRCQVELDRRQAR 1953
Cdd:TIGR02168 844 EEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREK 923
|
730
....*....|.
gi 81295809 1954 RATAHTRVPGA 1964
Cdd:TIGR02168 924 LAQLELRLEGL 934
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
2534-2946 |
7.61e-13 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 75.18 E-value: 7.61e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2534 QNQEKLQHLRTALTSAEARGSQQEHQLRRQVELLAYKVEQEKCIAGDLQKTlSEEQEKANSVQKllAAEQTVVRDLKSDL 2613
Cdd:PTZ00121 1363 EEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKA-AAAKKKADEAKK--KAEEKKKADEAKKK 1439
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2614 CESRQKSEQLSRSLCEVQQ-EVLQLRSMLSSKENELKAALQEL-ESEQGKGRALQSQLEEEQLRhlqRESQSAKALEELR 2691
Cdd:PTZ00121 1440 AEEAKKADEAKKKAEEAKKaEEAKKKAEEAKKADEAKKKAEEAkKADEAKKKAEEAKKKADEAK---KAAEAKKKADEAK 1516
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2692 ASLETQRAQSSRLCVALKHEQTAKDNLQKELRIEHSRCEALLAQERSQLSELQKdlAAEKSRTLelseALRHERLLTEQL 2771
Cdd:PTZ00121 1517 KAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAK--KAEEDKNM----ALRKAEEAKKAE 1590
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2772 SQRTQEACVHQDTQAHHALLQKLKEEKSRVVDLQAMLEKVQQQALHSQQQLEAEAQKHCEALRREKEV----SATLKSTV 2847
Cdd:PTZ00121 1591 EARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEEnkikAAEEAKKA 1670
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2848 EALHTQKRELRCSLEREREKPAWLQAELEQSHP-----RLKEQEGRKAAR-RSAEARQSPAAAEQWRKWQRDKEKLRELe 2921
Cdd:PTZ00121 1671 EEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKaeelkKKEAEEKKKAEElKKAEEENKIKAEEAKKEAEEDKKKAEEA- 1749
|
410 420
....*....|....*....|....*
gi 81295809 2922 lqrQRDLHKIKQLQQTVRDLESKDE 2946
Cdd:PTZ00121 1750 ---KKDEEEKKKIAHLKKEEEKKAE 1771
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
884-1749 |
1.18e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 74.32 E-value: 1.18e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 884 AEQDAFLQEAQEQHARELQLLQ----ERHQQQLLSVTAELE---ARHQAALGELTASLESKQGAL--LAARVAELQTK-- 952
Cdd:TIGR02168 212 AERYKELKAELRELELALLVLRleelREELEELQEELKEAEeelEELTAELQELEEKLEELRLEVseLEEEIEELQKEly 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 953 -HAADLGALETR---HLSSLDSLEScYLSEFQTIREEHRQALELLRADFEEQLWKKDSLhQTILTQELEKLKRKHEgELQ 1028
Cdd:TIGR02168 292 aLANEISRLEQQkqiLRERLANLER-QLEELEAQLEELESKLDELAEELAELEEKLEEL-KEELESLEAELEELEA-ELE 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1029 SVRDHLRT--EVSTELAGTVAHELQGV-----HQGEFGSEKKTALHEKEETLRLQSAQAQPFHQEEKESLSLQLQKKNHQ 1101
Cdd:TIGR02168 369 ELESRLEEleEQLETLRSKVAQLELQIaslnnEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEE 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1102 VQQLKDQVLSLSHEIEECRSELEVLQQRRERENREGANLLSMLKAdvnlshsergaLQDALRRLLGlFGETLRAAVTLRS 1181
Cdd:TIGR02168 449 LEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDS-----------LERLQENLEG-FSEGVKALLKNQS 516
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1182 RIGERVGLCLD----DAGAGLALSTApaLEETWSDVALPELDrtlsecAEMSSVAEISSHMRESFLMSPESVRECEQPir 1257
Cdd:TIGR02168 517 GLSGILGVLSElisvDEGYEAAIEAA--LGGRLQAVVVENLN------AAKKAIAFLKQNELGRVTFLPLDSIKGTEI-- 586
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1258 rvfQSLSLAVDGLMEMALDSSRQLEEARqihSRFEKEFSFKNEETAqVVRKHQELLECLKEesaakaelaLELHKTQGTL 1337
Cdd:TIGR02168 587 ---QGNDREILKNIEGFLGVAKDLVKFD---PKLRKALSYLLGGVL-VVDDLDNALELAKK---------LRPGYRIVTL 650
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1338 EGFKVETadlKEVLAGKEDSEHRLVLELESlrrqlqqaaqeqaaLREECTRLWSRGEATATDAEAREAALRKEVEDLTKE 1417
Cdd:TIGR02168 651 DGDLVRP---GGVITGGSAKTNSSILERRR--------------EIEELEEKIEELEEKIAELEKALAELRKELEELEEE 713
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1418 QSETRKQAEkdrsallsQMKILESELEEQLSQHRgcaKQAEAVTALEQQVASLDKHLRNQRQFMDEQAAEREHEREEFQQ 1497
Cdd:TIGR02168 714 LEQLRKELE--------ELSRQISALRKDLARLE---AEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEA 782
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1498 EIQRLEGQLRQAAkpQPWGPRDSQQAPLDGEVELLQQKLREKLDEFNELAIQKESADRQVLMQEEEIKRLEEMNINIRKK 1577
Cdd:TIGR02168 783 EIEELEAQIEQLK--EELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAE 860
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1578 VAQLQEEVEKQKNIVKGLEQDKEVLKKQQMSSLLLASTLQSTLDAGRCPEPPSgsppegpeiqlevtQRALLRRESEVLD 1657
Cdd:TIGR02168 861 IEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSEL--------------RRELEELREKLAQ 926
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1658 LKEQLEKMKGDLESKNEEILHLnLKLDMQNSQTAVSLRELEEENTSLKVIYTRsSEIEELK----ATIENLQENQKRL-- 1731
Cdd:TIGR02168 927 LELRLEGLEVRIDNLQERLSEE-YSLTLEEAEALENKIEDDEEEARRRLKRLE-NKIKELGpvnlAAIEEYEELKERYdf 1004
|
890 900
....*....|....*....|..
gi 81295809 1732 ---QKEKAEE-IEQLHEVIEKL 1749
Cdd:TIGR02168 1005 ltaQKEDLTEaKETLEEAIEEI 1026
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
660-1165 |
1.66e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 73.82 E-value: 1.66e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 660 LEADTERAARVLGLETEHKVQLSLLQTELKEEIELLKIENRNLYGKLQHETRLKDDLEKVKHNLIEDHQKELNNAKQKTE 739
Cdd:COG1196 293 LLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEA 372
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 740 LMKQEFQRKETDWKVMKEELQREAEEKLTLMLLELREKAESEKQtiinkfELREAEMRQLQDQQAAQILDLERSLTEQQG 819
Cdd:COG1196 373 ELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERL------ERLEEELEELEEALAELEEEEEEEEEALEE 446
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 820 RLQQLEQDLTSDDALhcsqcgrEPPTAQDGELAALHVKEDCALQLMLARsrfLEERKEITEKFSAEQDAFLQEAQEQHAR 899
Cdd:COG1196 447 AAEEEAELEEEEEAL-------LELLAELLEEAALLEAALAELLEELAE---AAARLLLLLEAEADYEGFLEGVKAALLL 516
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 900 ELQLLQERHQQQLLSVTAELEARHQAALGELTASLESKQGALLAARVAELQTKHAADLGALEtrhlssLDSLESCYLSEF 979
Cdd:COG1196 517 AGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLP------LDKIRARAALAA 590
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 980 QTIREEHRQALELLRADFEEQLWKKDSLHQTILTQELEKLKRKHEGELQSVRDHLRTEVSTELAGtvahELQGVHQGEFG 1059
Cdd:COG1196 591 ALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEG----GSAGGSLTGGS 666
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1060 SEKKTALHEKEETLRLQSAQAQPFHQEEKESLSLQLQKKNHQVQQLKDQVLSLSHEIEECRSELEVLQQRRERENREGAN 1139
Cdd:COG1196 667 RRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEE 746
|
490 500
....*....|....*....|....*.
gi 81295809 1140 LLSMLKADVNLSHSERGALQDALRRL 1165
Cdd:COG1196 747 LLEEEALEELPEPPDLEELERELERL 772
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2487-2982 |
2.23e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 73.43 E-value: 2.23e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2487 LLERLEKIIREQGDLQEKSLEHLRLpdrSSLLSEIQALRAQLRMTHLQNQEKLQHLRTALTSAEARGSQQEHQLRRQVEL 2566
Cdd:COG1196 234 LRELEAELEELEAELEELEAELEEL---EAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEER 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2567 LAYKVEQEKciagDLQKTLSEEQEKANSVQKLLAAEQTVVRDLKSDLCESRQKSEQLSRSLCEVQQEVLQLRSMLSSKEN 2646
Cdd:COG1196 311 RRELEERLE----ELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAE 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2647 ELKAALQELESEQGKGRALQSQLEEEQLRHLQRESQSAKALEELRASLETQRAQSSRLcVALKHEQTAKDNLQKELRIEH 2726
Cdd:COG1196 387 ELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEAL-EEAAEEEAELEEEEEALLELL 465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2727 SRCEALLAQERSQLSELQKDLAAEKSRTLELSEAL----------------------------------RHERLLTEQLS 2772
Cdd:COG1196 466 AELLEEAALLEAALAELLEELAEAAARLLLLLEAEadyegflegvkaalllaglrglagavavligveaAYEAALEAALA 545
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2773 QRTQEACVHQDTQAHHALLQKLKEEKSRVVDLQ-------AMLEKVQQQALHSQQQLEAEAQKHCEALRREKEVSATLKS 2845
Cdd:COG1196 546 AALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPldkirarAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGR 625
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2846 TVEALHTQKRELRCSLEREREKPAWLQAELEQSHPRLKEQEGRKAARRSAEARQSPAAAEQWRKWQRDK----------- 2914
Cdd:COG1196 626 TLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELEleeallaeeee 705
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2915 -------------EKLRELELQRQRDLHKIKQLQQTVRDLESKDEVPGsrlhlgsARRAAGSDADHLREQQRELEAMRQR 2981
Cdd:COG1196 706 erelaeaeeerleEELEEEALEEQLEAEREELLEELLEEEELLEEEAL-------EELPEPPDLEELERELERLEREIEA 778
|
.
gi 81295809 2982 L 2982
Cdd:COG1196 779 L 779
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
711-1603 |
3.23e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 69.70 E-value: 3.23e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 711 RLKDDLEKVKHNLIEDHQKELNNAKQKTELMKQEFQRKEtdwkvmkEELQREAEEKltlmllelrEKAESEKQTIINKFE 790
Cdd:TIGR02168 217 ELKAELRELELALLVLRLEELREELEELQEELKEAEEEL-------EELTAELQEL---------EEKLEELRLEVSELE 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 791 LREAEMRQLQDQQAAQILDLERSLTEQQGRLQQLEQDLTSDDalhcsqcgrepptaqdgelaalhvkedcalqlmlARSR 870
Cdd:TIGR02168 281 EEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELE----------------------------------AQLE 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 871 FLEERKEITEKFSAEQDAFLQEAQEQHARELQLLQERHQQQllsvtAELEARHQAALGELTAsleskqgalLAARVAELq 950
Cdd:TIGR02168 327 ELESKLDELAEELAELEEKLEELKEELESLEAELEELEAEL-----EELESRLEELEEQLET---------LRSKVAQL- 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 951 tkhaadlgaletrhlssldslescylsefqtireehRQALELLRADFEEQlwkkdSLHQTILTQELEKLKRKHEGELQSV 1030
Cdd:TIGR02168 392 ------------------------------------ELQIASLNNEIERL-----EARLERLEDRRERLQQEIEELLKKL 430
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1031 RDHLRTEVSTELAgtvahelqgvhqgefgsEKKTALHEKEETLRlqsaqaqpFHQEEKESLSLQLQKKNHQVQQLKDQVL 1110
Cdd:TIGR02168 431 EEAELKELQAELE-----------------ELEEELEELQEELE--------RLEEALEELREELEEAEQALDAAERELA 485
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1111 SLSHEIEecrsELEVLQQRRERENREGANLLsmlkADVNLSHSERGALQDALRrllglFGETLRAAV--TLRSRIGERVG 1188
Cdd:TIGR02168 486 QLQARLD----SLERLQENLEGFSEGVKALL----KNQSGLSGILGVLSELIS-----VDEGYEAAIeaALGGRLQAVVV 552
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1189 LCLDDAGAGLAlSTAPALEETWSDVALPELDRTLSECAEMSSVAEIsshmrESFLMSPESVRECEQPIRRVFQSL---SL 1265
Cdd:TIGR02168 553 ENLNAAKKAIA-FLKQNELGRVTFLPLDSIKGTEIQGNDREILKNI-----EGFLGVAKDLVKFDPKLRKALSYLlggVL 626
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1266 AVDGLmEMALDSSRQLE--------EARQIHSRFEKEFSFKNEETAQVVRKhQELLECLKEesaaKAELALELHKTQGTL 1337
Cdd:TIGR02168 627 VVDDL-DNALELAKKLRpgyrivtlDGDLVRPGGVITGGSAKTNSSILERR-REIEELEEK----IEELEEKIAELEKAL 700
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1338 EGFKVETADLKEVLAGKEDSEHRLVLELESLRrqlqQAAQEQAALREECTRLWSRGEATATDAEAREAALRKEVEDLTKE 1417
Cdd:TIGR02168 701 AELRKELEELEEELEQLRKELEELSRQISALR----KDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEE 776
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1418 QSETRKQAEKdrsallsqmkiLESELEEQLSQhrgCAKQAEAVTALEQQVASLDKHLRNQRQFMDEQAAEREHEreefQQ 1497
Cdd:TIGR02168 777 LAEAEAEIEE-----------LEAQIEQLKEE---LKALREALDELRAELTLLNEEAANLRERLESLERRIAAT----ER 838
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1498 EIQRLEGQLRQAAKpqpwgprdsQQAPLDGEVELLQQKLREKLDEFNELAIQKESADRQVLMQEEEIKRLEEMNINIRKK 1577
Cdd:TIGR02168 839 RLEDLEEQIEELSE---------DIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESK 909
|
890 900
....*....|....*....|....*.
gi 81295809 1578 VAQLQEEVEKQKNIVKGLEQDKEVLK 1603
Cdd:TIGR02168 910 RSELRRELEELREKLAQLELRLEGLE 935
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
724-1752 |
4.25e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 69.33 E-value: 4.25e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 724 IEDHQKELNNAKQKTELMKQEFQRKETDWKVMKEELQREAEEKLT-LMLLELR-EKAESEKQTIINKFELREAEMRQLQd 801
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKaERYQALLkEKREYEGYELLKEKEALERQKEAIE- 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 802 qqaAQILDLERSLTEQQGRLQQLEQDLTsddalhcsqcgrepptaqdgelAALHVKEDCALQLM-LARSRFLEERKEItE 880
Cdd:TIGR02169 244 ---RQLASLEEELEKLTEEISELEKRLE----------------------EIEQLLEELNKKIKdLGEEEQLRVKEKI-G 297
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 881 KFSAEQdAFLQEAQEQHARELQLLQERhQQQLLSVTAELEARHQAALGELTAslESKQGALLAARVAELQTKHA---ADL 957
Cdd:TIGR02169 298 ELEAEI-ASLERSIAEKERELEDAEER-LAKLEAEIDKLLAEIEELEREIEE--ERKRRDKLTEEYAELKEELEdlrAEL 373
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 958 GALETrhlssldslescylsEFQTIREEHRQalellradfeeqlwkkdslhqtiLTQELEKLKRKHEgELQSVRDHLRte 1037
Cdd:TIGR02169 374 EEVDK---------------EFAETRDELKD-----------------------YREKLEKLKREIN-ELKRELDRLQ-- 412
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1038 vstelagtvahelqgvhqgefgsEKKTALHEKEETLRLQSA---QAQPFHQEEKESLSLQLQKKNHQVQQLKDQVLSLSH 1114
Cdd:TIGR02169 413 -----------------------EELQRLSEELADLNAAIAgieAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQ 469
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1115 EIEECRSELEVLQQRRERENREGANLLSMLKADVNLSHSERGA---LQDALRRLLGLFGETLRaavtlrsrIGERVGLCL 1191
Cdd:TIGR02169 470 ELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVeevLKASIQGVHGTVAQLGS--------VGERYATAI 541
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1192 DDAGAGLAlstapaleetwsDVALPELDRTLSECAEMSSVAEISshmRESFLmspesvreceqPIRRVFQSLSLAVDGLM 1271
Cdd:TIGR02169 542 EVAAGNRL------------NNVVVEDDAVAKEAIELLKRRKAG---RATFL-----------PLNKMRDERRDLSILSE 595
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1272 EMALDSSRQLEEARQihsRFEKEFSF--------KNEETAQ-------VVRKHQELLEclkeesaaKAELALELHKTQGT 1336
Cdd:TIGR02169 596 DGVIGFAVDLVEFDP---KYEPAFKYvfgdtlvvEDIEAARrlmgkyrMVTLEGELFE--------KSGAMTGGSRAPRG 664
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1337 LEGFKVETADLKEVLAGKEDSEHRLVLELESLRRQLQQAAQEQAALREECTRLWSRGEATATDAEAREAALRKEVEDLTK 1416
Cdd:TIGR02169 665 GILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEE 744
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1417 EQSETrkqaEKDRSALLSQMKILESELEEQlsqhrgcakqAEAVTALEQQVASLDKHLRnqrqfmDEQAAEREHEREEFQ 1496
Cdd:TIGR02169 745 DLSSL----EQEIENVKSELKELEARIEEL----------EEDLHKLEEALNDLEARLS------HSRIPEIQAELSKLE 804
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1497 QEIQRLEGQLRQAakpqpwgprDSQQAPLDGEVELLQQKLREKLDEFNELAIQKESADRQVlmqEEEIKRLEEMNINIRK 1576
Cdd:TIGR02169 805 EEVSRIEARLREI---------EQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEI---ENLNGKKEELEEELEE 872
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1577 KVAQLQEEVEKQKNIVKGLEQDKEVLKKQQMSSLLLASTLQstldagrcpeppsgsPPEGPEIQLEVTQRALLRRESEvl 1656
Cdd:TIGR02169 873 LEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIE---------------KKRKRLSELKAKLEALEEELSE-- 935
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1657 dlkeqLEKMKGDLESKNEEILHLNlKLDMQNSQTAVSLRELEEENtsLKVIytrsSEIEELKATIENLQENQKRLQKEKa 1736
Cdd:TIGR02169 936 -----IEDPKGEDEEIPEEELSLE-DVQAELQRVEEEIRALEPVN--MLAI----QEYEEVLKRLDELKEKRAKLEEER- 1002
|
1050
....*....|....*.
gi 81295809 1737 EEIEQLHEVIEKLQHE 1752
Cdd:TIGR02169 1003 KAILERIEEYEKKKRE 1018
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1527-1840 |
8.82e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.16 E-value: 8.82e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1527 GEVELLQQKLREKLDEFNELAIQKESADRQVLMQEEEIKRLEEMNINIRKKVAQLQEEVEKQKNIVKGLEQDKEVLKKQQ 1606
Cdd:TIGR02168 232 LRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERL 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1607 MSSLLLASTLQSTLDagrcpeppsgsppeGPEIQLEVTQRALLRRESEVLDLKEQLEKMKGDLESKNEEILHLNLKLDmq 1686
Cdd:TIGR02168 312 ANLERQLEELEAQLE--------------ELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLE-- 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1687 nSQTAVSLRELEEENTSLKVIYTRSSEIEELKATIENLQENQKRLQKEKAEEIEQLHEVIEKLQHElslmgpvvhevsds 1766
Cdd:TIGR02168 376 -ELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQA-------------- 440
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 81295809 1767 QAGSLQSELLCSQAGGPRGQALQGELEAALEAKEALSRLLADQERRHSQ---ALEALQQRLQGAEEAAELQLAELER 1840
Cdd:TIGR02168 441 ELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQArldSLERLQENLEGFSEGVKALLKNQSG 517
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
327-1136 |
1.36e-10 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 67.69 E-value: 1.36e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 327 ELKEKLQSEMEKNAQIVKTLKEDWESEKDLCLENLRKELSAKHQSEMEDLQNQFQKELAEQRAELEKIFQDKNQAERALR 406
Cdd:pfam02463 170 KKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDE 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 407 NLESHHQAAIEKLREDLqsehgrcLEDLEFKFKESEKEKQLElenlqasyEDLKAQSQEEIRRLWSQLDSARTSRQELSE 486
Cdd:pfam02463 250 QEEIESSKQEIEKEEEK-------LAQVLKENKEEEKEKKLQ--------EEELKLLAKEEEELKSELLKLERRKVDDEE 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 487 LHEQLLARTSRVEDLEQLKQREKTQHESELEQLRIYFEKKLRDAEKTYQEDLTLLQqrlqgaREDALLDSVEvglscvGL 566
Cdd:pfam02463 315 KLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQ------LEEELLAKKK------LE 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 567 EEKPEKGRKDHVDELEPERHKESLPRFQAELEESHRHQLEALESPLCIQHEghvsdrccVETSALGHEWRLEPSEGHSQE 646
Cdd:pfam02463 383 SERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILE--------EEEESIELKQGKLTEEKEELE 454
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 647 LPWVHLQGVQDGDLEADTERAARVLGLETEHKVQLSLLQteLKEEIELLKIENRNLYGKLQhetRLKDDLEKVKHNLIED 726
Cdd:pfam02463 455 KQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQ--KLEERSQKESKARSGLKVLL---ALIKDGVGGRIISAHG 529
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 727 HQKELNNAKQKTELMKQEFQRKET----DWKVMKEELQREAEEKLTLMLLELREKAESEKQTIINKFELREAEMRQLQDQ 802
Cdd:pfam02463 530 RLGDLGVAVENYKVAISTAVIVEVsataDEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLD 609
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 803 QAAQILDLERSL-TEQQGRLQQLEQDLTSDDALHCSQCGREPPTAQDGELAALHVKEdcalQLMLARSRFLEERKEITEK 881
Cdd:pfam02463 610 KATLEADEDDKRaKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKA----SLSELTKELLEIQELQEKA 685
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 882 FSAEQDAFLQEAQEQHARELQLLQERHQQQLLSVTAELEARHQAALGELTASLESKQGALLAARVAELQTKHAADLGALE 961
Cdd:pfam02463 686 ESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEE 765
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 962 TRHLSSLDSLESCYLSEFQTIREEHRQALELLRADFEEQLWKKDSLHQTILTQELEKLKRKHEGELQSVRDHLRTEVSTE 1041
Cdd:pfam02463 766 KSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEE 845
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1042 LAGTVAHELQGVHQGEFgSEKKTALHEKEETLRLQSAQAQPFHQEEKESLSLQLQKKNHQVQQLKDQVLSLSHEIEECRS 1121
Cdd:pfam02463 846 QKLEKLAEEELERLEEE-ITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIK 924
|
810
....*....|....*
gi 81295809 1122 ELEVLQQRRERENRE 1136
Cdd:pfam02463 925 EEAEILLKYEEEPEE 939
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
978-1907 |
1.70e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 67.39 E-value: 1.70e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 978 EFQTIREEHRQA-LELLRADFEEQLWKKDSLHQTIltQELEKLKRKHEGELQSVRDHLRTevsTELAGTVAHELQGVHQG 1056
Cdd:TIGR02168 214 RYKELKAELRELeLALLVLRLEELREELEELQEEL--KEAEEELEELTAELQELEEKLEE---LRLEVSELEEEIEELQK 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1057 EFGsEKKTALHEKEETLRLQSAQAQPFHQEEKEsLSLQLQKKNHQVQQLKDQVLSLSHEIEECRSELEVLQQRRERENRE 1136
Cdd:TIGR02168 289 ELY-ALANEISRLEQQKQILRERLANLERQLEE-LEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAE 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1137 GANLLSMLKADVNLSHSERGALQDALRRLLGLFGETLRAAVTLrSRIGERVGLCLDDAGAGLALSTAPALEETWSDvaLP 1216
Cdd:TIGR02168 367 LEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARL-ERLEDRRERLQQEIEELLKKLEEAELKELQAE--LE 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1217 ELDRTLSECAEMSSVAEisshmresflmspESVRECEQPIRRVFQSLSLAVDGLMEMA--LDSSRQLEEARQIHSRFEKE 1294
Cdd:TIGR02168 444 ELEEELEELQEELERLE-------------EALEELREELEEAEQALDAAERELAQLQarLDSLERLQENLEGFSEGVKA 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1295 FSFKNEETAQVVRKHQELLECLKEESAAKaELALELHKTQGTLEGF---KVETADLKEVLAGKedsehRLVLELESLRRQ 1371
Cdd:TIGR02168 511 LLKNQSGLSGILGVLSELISVDEGYEAAI-EAALGGRLQAVVVENLnaaKKAIAFLKQNELGR-----VTFLPLDSIKGT 584
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1372 LQQAAQEQAALREECtrlwsrgeatatdaeareaalrkeVEDLTKEQSETRKQAEKDRSALLSQMKILESeLEEQLSQHR 1451
Cdd:TIGR02168 585 EIQGNDREILKNIEG------------------------FLGVAKDLVKFDPKLRKALSYLLGGVLVVDD-LDNALELAK 639
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1452 GCAKQAEAVTaleqqvasLDKHLRNQRQFMDEQAAEREHEREEFQQEIQRLEGQLRQAAkpqpwgprdSQQAPLDGEVEL 1531
Cdd:TIGR02168 640 KLRPGYRIVT--------LDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELE---------EKIAELEKALAE 702
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1532 LQQKLREKLDEFNELAIQKESADRQVLMQEEEIKRLEEMNINIRKKVAQLQEEVEKQKNIVKGLEQdkevlkkqqmssll 1611
Cdd:TIGR02168 703 LRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEE-------------- 768
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1612 lastlqstldagrcpeppsgsppegpeiQLEVTQRALLRRESEVLDLKEQLEKMKGDLESKNEEILHLNlkldMQNSQTA 1691
Cdd:TIGR02168 769 ----------------------------RLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELR----AELTLLN 816
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1692 VSLRELEEENTSLKviytrsSEIEELKATIENLQEnqkrlqkekaeEIEQLHEVIEKLQHELSLMGpVVHEVSDSQAGSL 1771
Cdd:TIGR02168 817 EEAANLRERLESLE------RRIAATERRLEDLEE-----------QIEELSEDIESLAAEIEELE-ELIEELESELEAL 878
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1772 QSELLCSQAGGPRGQALQGELEAALEAKEALSRLLADQERRHSQALEALQQRLQGAE-----------EAAELQLAELER 1840
Cdd:TIGR02168 879 LNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEvridnlqerlsEEYSLTLEEAEA 958
|
890 900 910 920 930 940 950
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 81295809 1841 NVALREAEVEDMASRIQEFEAALKAkeatIAERNL----EIDALNQRKAAHSAELEAVLLALARIRRALEQ 1907
Cdd:TIGR02168 959 LENKIEDDEEEARRRLKRLENKIKE----LGPVNLaaieEYEELKERYDFLTAQKEDLTEAKETLEEAIEE 1025
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1695-2023 |
2.05e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 66.88 E-value: 2.05e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1695 RELEEENTSLKVIYtRSSEIEELKATIENLQENQKRLQKEKAEEIEQLHEVIEKLQHELSlmgpvVHEVSDSQAGSLQSE 1774
Cdd:COG1196 216 RELKEELKELEAEL-LLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRL-----ELEELELELEEAQAE 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1775 LLCSQAggpRGQALQGELEAALEAKEALSRLLADQERRHsQALEALQQRLQGAEEAAELQLAELERNVALREAEVEDMAS 1854
Cdd:COG1196 290 EYELLA---ELARLEQDIARLEERRRELEERLEELEEEL-AELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEE 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1855 RIQEFEAALKAKEATIAERNLEIDALNQRKAAHSAELEAVLLALARIRRALEQQPLAAGAAPPELQWLRAQCARLSRQLQ 1934
Cdd:COG1196 366 ALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALE 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1935 VLHQRFLRCQVELDRRQARRATAHTRVPGAHPQprmdgGAKAQVTGDVEASHDAALEPVVPDPQGDLQPVLVTLKDAPLC 2014
Cdd:COG1196 446 EAAEEEAELEEEEEALLELLAELLEEAALLEAA-----LAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLR 520
|
....*....
gi 81295809 2015 KQEGVMSVL 2023
Cdd:COG1196 521 GLAGAVAVL 529
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1256-1759 |
3.93e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 66.11 E-value: 3.93e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1256 IRRVFQSLSLAVDGLMEMALDSSRQLEEARQIHSRFEKEFSFKNEETAQVVRKHQELLECLKEESAAKAELALELHKTQG 1335
Cdd:COG1196 272 LRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEE 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1336 TLEGFKVETADLKEVLAGKEDSEHRLVLELESLRRQLQQAAQEQAALREECTRLwsrgEATATDAEAREAALRKEVEDLT 1415
Cdd:COG1196 352 ELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEEL----EEAEEALLERLERLEEELEELE 427
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1416 KEQSETRKQAEKDRSALLSQMKiLESELEEQLSQHRGCAKQAEAVTALEQQVASLDKHLRNQRQFMDEQAAEREHEREEF 1495
Cdd:COG1196 428 EALAELEEEEEEEEEALEEAAE-EEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGF 506
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1496 QQEIQRLEGQLRQAAKPQ-----PWGPRDSQQAPLDGEVELLQQKLREKLDEfnelAIQKESADRQVLMQEEEIKRLEEM 1570
Cdd:COG1196 507 LEGVKAALLLAGLRGLAGavavlIGVEAAYEAALEAALAAALQNIVVEDDEV----AAAAIEYLKAAKAGRATFLPLDKI 582
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1571 NINIRKKVAQLQEEVEKQKNIVKGLEQDKEVLKKQQMSSLLLASTLQSTLDAGRCPEPPSGSPPEGPEIQLEV------- 1643
Cdd:COG1196 583 RARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGgsaggsl 662
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1644 ----TQRALLRRESEVLDLKEQLEKMKGDLESKNEEILHLNLKLDMQNSQTAVSLRELEEENTSLKVIYTRSSEIEELKA 1719
Cdd:COG1196 663 tggsRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELL 742
|
490 500 510 520
....*....|....*....|....*....|....*....|
gi 81295809 1720 TIENLQENQKRLQKEKAEEIEQLHEVIEKLQHELSLMGPV 1759
Cdd:COG1196 743 EEEELLEEEALEELPEPPDLEELERELERLEREIEALGPV 782
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
862-1484 |
1.02e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.57 E-value: 1.02e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 862 LQLMLARSRFLEERKEITEKFSAEQDAFLQEAQEQhARELQLLQERHQQQLLSVTAELEARhQAALGELTASLESKQGAL 941
Cdd:COG1196 227 AELLLLKLRELEAELEELEAELEELEAELEELEAE-LAELEAELEELRLELEELELELEEA-QAEEYELLAELARLEQDI 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 942 laARVAELQTKHAADLGALETRHLSSLDSLEscylsEFQTIREEHRQALELLRADFEEQLWKKDSLhqtilTQELEKLKR 1021
Cdd:COG1196 305 --ARLEERRRELEERLEELEEELAELEEELE-----ELEEELEELEEELEEAEEELEEAEAELAEA-----EEALLEAEA 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1022 KHEGELQSVRDHLRTEVSTELAGTVAHELQGVHQGEFGSEKKTALHEKEETLRLQSAQAQpfHQEEKESLSLQLQKKNHQ 1101
Cdd:COG1196 373 ELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAE--LEEEEEEEEEALEEAAEE 450
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1102 VQQLKDQVLSLSHEIEECRSELEVLQQRRERENREGANLLSMLKADVNLSHSERGALQDALRRLLGLFGETLRAAVTLRS 1181
Cdd:COG1196 451 EAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLI 530
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1182 RIGERVGLCLDDAGAGLALstapaleetwsdVALPELDRTLSECAEMSSVAEISshmresflmspesvreceqpiRRVFQ 1261
Cdd:COG1196 531 GVEAAYEAALEAALAAALQ------------NIVVEDDEVAAAAIEYLKAAKAG---------------------RATFL 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1262 SLSLAVDGLMEMALDSSRQLEEARQIHSrfekefsfknEETAQVVRKHQELLECLKEESAAKAELALELHKTQGTLEGFK 1341
Cdd:COG1196 578 PLDKIRARAALAAALARGAIGAAVDLVA----------SDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLR 647
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1342 VETADLKEVLAGKEDSEHRLVLELESLRRQLQQAAQEQAALREEctrlwsRGEATATDAEAREAALRKEVEDLTKEQSET 1421
Cdd:COG1196 648 EVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEE------ELELEEALLAEEEEERELAEAEEERLEEEL 721
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1422 RKQAEKDRSALLSQMKILESELEEQLSQHRGCAKQAEA--VTALEQQVASLDK-----------------HLRNQRQFMD 1482
Cdd:COG1196 722 EEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPpdLEELERELERLEReiealgpvnllaieeyeELEERYDFLS 801
|
..
gi 81295809 1483 EQ 1484
Cdd:COG1196 802 EQ 803
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2463-3041 |
2.57e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.54 E-value: 2.57e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2463 KEQEMQGVELQPRLSGSDLGGHSSLLERLEKIIREQGDLQEKSLEHLRLpdRSSLLSEIQALRAQLRMTHLQNQEKLQHL 2542
Cdd:TIGR02168 216 KELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQE--LEEKLEELRLEVSELEEEIEELQKELYAL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2543 RTALTSAEAR---GSQQEHQLRRQVELLAYKVEQEKCIAGDLQKTLSEEQEKANSVQK-------LLAAEQTVVRDLKSD 2612
Cdd:TIGR02168 294 ANEISRLEQQkqiLRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEelesleaELEELEAELEELESR 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2613 LCESRQKSEQLSRSLCEVQQEVLQLRSMLSSKENELKAALQELESEQGKGRALQSQLEEEQLRHLQRE-SQSAKALEELR 2691
Cdd:TIGR02168 374 LEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAElEELEEELEELQ 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2692 ASLETQRAQSSRLCVALKHEQTAKDNLQKELRIEHSRCEAL----------------LAQERSQLS-------------- 2741
Cdd:TIGR02168 454 EELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLerlqenlegfsegvkaLLKNQSGLSgilgvlselisvde 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2742 -----------------------------ELQKDLAAEKSRTLELS-------EALRHERLLTEQLSQRTQEACVHQDTQ 2785
Cdd:TIGR02168 534 gyeaaieaalggrlqavvvenlnaakkaiAFLKQNELGRVTFLPLDsikgteiQGNDREILKNIEGFLGVAKDLVKFDPK 613
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2786 AHHAL------------------LQKLKEEKSRVVDLQ----------------------------AMLEKVQQQALHSQ 2819
Cdd:TIGR02168 614 LRKALsyllggvlvvddldnaleLAKKLRPGYRIVTLDgdlvrpggvitggsaktnssilerrreiEELEEKIEELEEKI 693
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2820 QQLEAEAQKHCEALRREKEVSATLKSTVEALHTQKRELRCSLEREREKPAWLQAELEQSHPRLKEQEGRKAARRSAEARQ 2899
Cdd:TIGR02168 694 AELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEA 773
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2900 SPAAAEQWRKWQRDKEKLRELELQRQRDLHKIKQLQQTVRDLesKDEVPGSRLHLGSARRAAGSDADHLREQQRELEAMR 2979
Cdd:TIGR02168 774 EEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLL--NEEAANLRERLESLERRIAATERRLEDLEEQIEELS 851
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 81295809 2980 QRLLSAARLLTSFTSQAvdRTVNDWTSSNEKAVMSLLHTLEELKSDLSRPTSSQKKMAAELQ 3041
Cdd:TIGR02168 852 EDIESLAAEIEELEELI--EELESELEALLNERASLEEALALLRSELEELSEELRELESKRS 911
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1404-1907 |
3.03e-09 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 62.86 E-value: 3.03e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1404 EAALRKEVEDLTKEQ-------SETRKQAEKDRSALLSQMKILESELEEQLSQHRGCAKQAEAVTALEQQVASLDKHLRN 1476
Cdd:COG4717 48 LERLEKEADELFKPQgrkpelnLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQL 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1477 QRQFMDEQAAerehereefQQEIQRLEGQLRQA-AKPQPWGPRDSQQAPLDGEVELLQQKLREKLDEFNELAIQK-ESAD 1554
Cdd:COG4717 128 LPLYQELEAL---------EAELAELPERLEELeERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEElQDLA 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1555 RQVLMQEEEIKRLEEMNINIRKKVAQLQEEVEKQKNIVKGLEQDKEVlkKQQMSSLLLASTLQSTLDAGRCPEPPSGSPP 1634
Cdd:COG4717 199 EELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERL--KEARLLLLIAAALLALLGLGGSLLSLILTIA 276
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1635 EGPEIQLEVTQRALLRRESEVLDLKEQLEKMKGDLESKN---EEILHLNLKLDMQNSQTAVSLRELEEENTSLKVIYTRS 1711
Cdd:COG4717 277 GVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEEleeEELEELLAALGLPPDLSPEELLELLDRIEELQELLREA 356
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1712 SEIEELKATIENLQENQKRLQKEKAEEIEQLHEVIEKLQhelslmgpvvhevsdsqagslqsellcsqaggprgqalqge 1791
Cdd:COG4717 357 EELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAE----------------------------------------- 395
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1792 leaalEAKEALSRLLADQERRHSQALEALQQRLQGAEEAAELQLAELERNVALREAEVEDMASRIQEFEAALKA--KEAT 1869
Cdd:COG4717 396 -----EYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQleEDGE 470
|
490 500 510
....*....|....*....|....*....|....*...
gi 81295809 1870 IAERNLEIDALNQRKAAHSAELEAVLLALARIRRALEQ 1907
Cdd:COG4717 471 LAELLQELEELKAELRELAEEWAALKLALELLEEAREE 508
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1648-1900 |
1.05e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 61.47 E-value: 1.05e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1648 LLRRESEVLDLKEQLEKMkGDLESKNEEILhlnlkldmqnsQTAVSLRELEEENTSLKViYTRSSEIEELKATIENLQEN 1727
Cdd:COG4913 237 LERAHEALEDAREQIELL-EPIRELAERYA-----------AARERLAELEYLRAALRL-WFAQRRLELLEAELEELRAE 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1728 QKRLQKEKAE---EIEQLHEVIEKLQHELSlmgpvvhevsdsqagslqsellcsQAGGPRGQALQGELEAALEAKEALSR 1804
Cdd:COG4913 304 LARLEAELERleaRLDALREELDELEAQIR------------------------GNGGDRLEQLEREIERLERELEERER 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1805 LLADQErrhsQALEALQQRLQGAEEAAELQLAELERNVALREAEVEDMASRIQEFEAALKAKEATIAERNLEIDALNQRK 1884
Cdd:COG4913 360 RRARLE----ALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRK 435
|
250
....*....|....*.
gi 81295809 1885 AAHSAELEAVLLALAR 1900
Cdd:COG4913 436 SNIPARLLALRDALAE 451
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1649-1942 |
1.47e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.84 E-value: 1.47e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1649 LRRESEV----LDLKEQLEKMK-----GDLESKNEEILHLNLKLDMQNSQ---TAVSLRELEEENTSLKV-IYTRSSEIE 1715
Cdd:TIGR02168 205 LERQAEKaeryKELKAELRELElallvLRLEELREELEELQEELKEAEEEleeLTAELQELEEKLEELRLeVSELEEEIE 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1716 ELKATIENLQENQKRLQKEKA---EEIEQLHEVIEKLQHELslmgpvvhEVSDSQAGSLQSELlcsQAGGPRGQALQGEL 1792
Cdd:TIGR02168 285 ELQKELYALANEISRLEQQKQilrERLANLERQLEELEAQL--------EELESKLDELAEEL---AELEEKLEELKEEL 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1793 EAALEAKEALSRLLADQERRhSQALEALQQRLQGAEEAAELQLAELERNVALREAEVEDMASRIQEFEAALKAKEATIAE 1872
Cdd:TIGR02168 354 ESLEAELEELEAELEELESR-LEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEE 432
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1873 rnLEIDALNQRKAAHSAELEAVLLALARIRRALEQQPLAAGAAPPELQWLRAQCARLSRQLQVLHQRFLR 1942
Cdd:TIGR02168 433 --AELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQEN 500
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
2580-2778 |
1.84e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 59.39 E-value: 1.84e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2580 DLQKTLSEEQEKANSVQKLLAAEQTVVRDLKSDLCESRQKSEQLSRSLCEVQQEVLQLRSMLSSKENELKAALQELESEQ 2659
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2660 GK-----------GRA------LQSQLEEEQLRHLQRESQSAKALEELRASLETQRAQSSRLCVALKHEQTAKDNLQKEL 2722
Cdd:COG4942 104 EElaellralyrlGRQpplallLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAEL 183
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 81295809 2723 RIEHSRCEALLAQERSQLSELQKDLAAEKSRTLELSEALRHERLLTEQLSQRTQEA 2778
Cdd:COG4942 184 EEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAA 239
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2560-2845 |
2.42e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.46 E-value: 2.42e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2560 LRRQVE----LLAYKVEQEKCIAGDLQKTLSEEQEKANSVQKLLAAEQTVVRDLKSDLCESRQKSEQLSRSLCEVQQEVL 2635
Cdd:TIGR02168 205 LERQAEkaerYKELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIE 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2636 QLRSMLsskeNELKAALQELESEQGKGRALQSQLEEEQLRHLQRESQSAKALEELRASLETQRAQSSRL---CVALKHEQ 2712
Cdd:TIGR02168 285 ELQKEL----YALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELkeeLESLEAEL 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2713 TAKDNLQKELRIEHSRCEALLAQERSQLSELQKDLAAEKSRTLELSEALRHERLLTEQLSQRTQEACVHQDTQAHHALLQ 2792
Cdd:TIGR02168 361 EELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQA 440
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 81295809 2793 KLKEEKSRVVDLQAMLEKVQQQALHSQQQLEAEAQKHCEALRREKEVSATLKS 2845
Cdd:TIGR02168 441 ELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDS 493
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
2489-2947 |
3.28e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 60.15 E-value: 3.28e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2489 ERLEKIIREQGDLQEKSLEHLRLPDRSSLLSEIQA--LRAQLRMTHLQNQEKLQHLRTALTSAEARGSQQEHQLRRQVEL 2566
Cdd:PTZ00121 1240 EEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAeeARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADE 1319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2567 LAYKVEQEKCIAGDLQKTlSEEQEKANSVQKllAAEQTVVRDLKSdlCESRQKSEQLSRSLCEVQQEVLQLRSMLSSKEN 2646
Cdd:PTZ00121 1320 AKKKAEEAKKKADAAKKK-AEEAKKAAEAAK--AEAEAAADEAEA--AEEKAEAAEKKKEEAKKKADAAKKKAEEKKKAD 1394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2647 ELKAALQEL----------ESEQGKGRALQSQLEE-EQLRHLQRESQSAKALEELRASLETQRAQSSrlcVALKHEQTAK 2715
Cdd:PTZ00121 1395 EAKKKAEEDkkkadelkkaAAAKKKADEAKKKAEEkKKADEAKKKAEEAKKADEAKKKAEEAKKAEE---AKKKAEEAKK 1471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2716 DNLQKELRIEHSRCEALL--AQERSQLSELQKDLAAEKSRTLELSEAlrHERLLTEQLsQRTQEAcvHQDTQAHHALLQK 2793
Cdd:PTZ00121 1472 ADEAKKKAEEAKKADEAKkkAEEAKKKADEAKKAAEAKKKADEAKKA--EEAKKADEA-KKAEEA--KKADEAKKAEEKK 1546
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2794 LKEEKSRVVDLQAMLEKVQQQALHSQQQLEAEAQKHCEALRR--EKEVSATLKSTVEALHTQKRELRcSLEREREKPAWL 2871
Cdd:PTZ00121 1547 KADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKaeEARIEEVMKLYEEEKKMKAEEAK-KAEEAKIKAEEL 1625
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2872 QAELE-----QSHPRLKEQEGRKAAR-RSAEARQSPAAAEQWRKWQRDKEKLRELelqRQRDLHKIKQLQQTVRDLESKD 2945
Cdd:PTZ00121 1626 KKAEEekkkvEQLKKKEAEEKKKAEElKKAEEENKIKAAEEAKKAEEDKKKAEEA---KKAEEDEKKAAEALKKEAEEAK 1702
|
..
gi 81295809 2946 EV 2947
Cdd:PTZ00121 1703 KA 1704
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
680-1369 |
3.38e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 59.69 E-value: 3.38e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 680 QLSLLQTELKEEIELLKIENRNLYGK---LQHETRLKDDLEKVKHNLIEDHQKELNNAKQKTELMKQEFQRKETDWKVMK 756
Cdd:TIGR02168 271 ELRLEVSELEEEIEELQKELYALANEisrLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELK 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 757 EELQREAEEKLTL-MLLELREKAESEKQTIINKFELREAEMRQLQDQQAAQILDLERSLTEQQGRLQQLEQDLtsddalh 835
Cdd:TIGR02168 351 EELESLEAELEELeAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEI------- 423
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 836 cSQCGREPPTAQDGELAALHVKEDCALQLMLARSRFLEERKEITEKFSAEQDAFLQEAQEQHAR------ELQLLQERHQ 909
Cdd:TIGR02168 424 -EELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQlqarldSLERLQENLE 502
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 910 Q-----------------------QLLSVTAELEARHQAALGELTASL--ESKQGALLAarvAELQTKHAADLGALETRH 964
Cdd:TIGR02168 503 GfsegvkallknqsglsgilgvlsELISVDEGYEAAIEAALGGRLQAVvvENLNAAKKA---IAFLKQNELGRVTFLPLD 579
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 965 LSSLDSLESCYLSEFQTIREEHRQALELLRADFEEQLWKKDSLHQTI----LTQELEKLKRKHEGELQSVRDhlrtevst 1040
Cdd:TIGR02168 580 SIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLvvddLDNALELAKKLRPGYRIVTLD-------- 651
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1041 elaGTVAHElQGVHQGEFGSEKKTALHEKEETLRLQSAQAQpfHQEEKESLSLQLQKKNHQVQQLKDQVLSLSHEIEECR 1120
Cdd:TIGR02168 652 ---GDLVRP-GGVITGGSAKTNSSILERRREIEELEEKIEE--LEEKIAELEKALAELRKELEELEEELEQLRKELEELS 725
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1121 SELEVLQ---QRRERENREGANLLSMLKADVNLSHSERGALQDALRRLLGLFGETLRAAVTLRSRIGERVGLCLDDAGAG 1197
Cdd:TIGR02168 726 RQISALRkdlARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREAL 805
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1198 LALSTapaleetwsdvalpELDRTLSECAEMSSVAEISSHMRESFLMSPESVRECEQPIRRVFQSLSLAVDGLMEMALDS 1277
Cdd:TIGR02168 806 DELRA--------------ELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEEL 871
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1278 SRQLEEARQIHSRFEKEFSFKNEETAQVVRKHQELLECLKEESAAKAELALELHKTQGTLEGFKVETADLKEVLAGKEDS 1357
Cdd:TIGR02168 872 ESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSL 951
|
730
....*....|..
gi 81295809 1358 EHRLVLELESLR 1369
Cdd:TIGR02168 952 TLEEAEALENKI 963
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1407-1748 |
3.44e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 59.65 E-value: 3.44e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1407 LRKEVEDLTKEQSETRKQAEKDRSALL-SQMKILESELEEQLSQhrgCAKQAEAVTALEQQVASLDK---HLRNQRQFMD 1482
Cdd:TIGR04523 286 LEKQLNQLKSEISDLNNQKEQDWNKELkSELKNQEKKLEEIQNQ---ISQNNKIISQLNEQISQLKKeltNSESENSEKQ 362
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1483 EQAAEREHEREEFQQEIQRLEGQLRQaakpqpwgprdsqqapLDGEVELLQQKLREKLDEFNELAIQKESADRQVLMQEE 1562
Cdd:TIGR04523 363 RELEEKQNEIEKLKKENQSYKQEIKN----------------LESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEK 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1563 EIKRLEEMNINIRKKVAQLQEEVEKQKNIVKGLEQDKEVLKKQQMSSLLLASTLQSTLDAgrcpeppsgsppegpeiqle 1642
Cdd:TIGR04523 427 EIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQ-------------------- 486
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1643 vTQRALLRRESEVLDLKEQ---LEKMKGDLESKNEEILHLNLKLDMQNSQTAVSLRELEEENTSL----------KVIYT 1709
Cdd:TIGR04523 487 -KQKELKSKEKELKKLNEEkkeLEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDdfelkkenleKEIDE 565
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 81295809 1710 RSSEIEELKATIENLQENQKRLQ---KEKAEEIEQLHEVIEK 1748
Cdd:TIGR04523 566 KNKEIEELKQTQKSLKKKQEEKQeliDQKEKEKKDLIKEIEE 607
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2460-2774 |
4.11e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 59.69 E-value: 4.11e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2460 AFEKEQEMQGVELQPRLSGSDLGGHSSLLERLEKIIREqgDLQEKSLEHLRLPDRSSLLSEIQALRAQLRMTHLQNQEKL 2539
Cdd:TIGR02168 672 ILERRREIEELEEKIEELEEKIAELEKALAELRKELEE--LEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERI 749
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2540 QHLRTALTSAEArgsQQEHQLRRQVELLAYKVEQEKCIAgDLQKTLSEEQEKANSVQKLLAAEQTVVRDLKSDLCESRQK 2619
Cdd:TIGR02168 750 AQLSKELTELEA---EIEELEERLEEAEEELAEAEAEIE-ELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRER 825
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2620 SEQLSRSLCEVQQEVLQLRSMLSSKENELKAALQELESEQGKGRALQSQLEEeqlrHLQRESQSAKALEELRASLETQRA 2699
Cdd:TIGR02168 826 LESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEA----LLNERASLEEALALLRSELEELSE 901
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 81295809 2700 QSSrlcvALKHEQTAKDNLQKELRIEHSRCEALLAQERSQLSELQKDLAAEKSRTLELSEALRHERLLTEQLSQR 2774
Cdd:TIGR02168 902 ELR----ELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARR 972
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
758-1370 |
9.27e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.41 E-value: 9.27e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 758 ELQREAEE-KLTLMLLELREkAESEKQTIINKFELREAEMRQLQDQQAAqildLERSLTEQQGRLQQLEQDLTSddalhc 836
Cdd:COG1196 217 ELKEELKElEAELLLLKLRE-LEAELEELEAELEELEAELEELEAELAE----LEAELEELRLELEELELELEE------ 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 837 sqcgrepptAQDGELAALHVKEDC--ALQLMLARSRFLEERKEITEKFSAEQDAFLQEAQEQHARELQLLQERHQQQLLS 914
Cdd:COG1196 286 ---------AQAEEYELLAELARLeqDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEA 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 915 vtAELEARHQAALGELTASLESKQGALLAARVAELQTKHAADLGALETRHLSSLdslescyLSEFQTIREEHRQALELLR 994
Cdd:COG1196 357 --EAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEA-------EEALLERLERLEEELEELE 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 995 ADFEEQLWKKDSLHQTILTQ--ELEKLKRKHEGELQSVRDHLRTEVSTELAGTVAHElqgvhqgefgsekktALHEKEET 1072
Cdd:COG1196 428 EALAELEEEEEEEEEALEEAaeEEAELEEEEEALLELLAELLEEAALLEAALAELLE---------------ELAEAAAR 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1073 LRLQSAQAQPFHQEEKESLSLQLQKKNHQVQQLKDQVLSLSHEIEE-CRSELEVLQQRRERENREGAnllsmlkadvnls 1151
Cdd:COG1196 493 LLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAaLEAALAAALQNIVVEDDEVA------------- 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1152 hseRGALQDALRRLLGLFGETLRAAVTLRSRIGERVGLCLDDAGAGLALSTAPALEETWSDVALPELDRTLSECAEMSSV 1231
Cdd:COG1196 560 ---AAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAAL 636
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1232 AEISSHMREsflmspesVRECEQPIRRVFQSLSLAVDGLMEMALDSSRQLEEARQIHSRFEKEFSFKNEETAQVVRKHQE 1311
Cdd:COG1196 637 RRAVTLAGR--------LREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERE 708
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*....
gi 81295809 1312 LLECLKEESAAKAELALELHKTQGTLEGFKVETADLKEVLAGKEDSEHRLVLELESLRR 1370
Cdd:COG1196 709 LAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELER 767
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1713-1939 |
9.96e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 58.39 E-value: 9.96e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1713 EIEELKATIENLQENQKRLQKEKA-----EEIEQLHEVIEKLQHELS----LMGPVVHEVSDSQAGSLQSELlcsqaggp 1783
Cdd:COG4913 226 AADALVEHFDDLERAHEALEDAREqiellEPIRELAERYAAARERLAeleyLRAALRLWFAQRRLELLEAEL-------- 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1784 rgQALQGELEAALEAKEALSRLLADQERRHSQALEALQQRLQGAEEAAELQLAELERNVALREAEVEDMASRIQEFEAAL 1863
Cdd:COG4913 298 --EELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPL 375
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 81295809 1864 KAKEATIAERNLEIDAlnqRKAAHSAELEAVLLALARIRRALEQqplaagaappelqwLRAQCARLSRQLQVLHQR 1939
Cdd:COG4913 376 PASAEEFAALRAEAAA---LLEALEEELEALEEALAEAEAALRD--------------LRRELRELEAEIASLERR 434
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1714-1964 |
1.06e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.16 E-value: 1.06e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1714 IEELKATIENLQENQKRLQKE--KAEEIEQLHEVIEKLQHELSLMGPVVHEVS----DSQAGSLQSELlcsqaggprgQA 1787
Cdd:TIGR02169 186 IERLDLIIDEKRQQLERLRREreKAERYQALLKEKREYEGYELLKEKEALERQkeaiERQLASLEEEL----------EK 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1788 LQGELEAALEAKEALSRLLADQERRHSQALEALQQRLQGAEEAAELQLAELERNVALREAEVEDMASRIQEFEAALKAKE 1867
Cdd:TIGR02169 256 LTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLL 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1868 ATIAERNLEIDALNQRKAAHSAELEAVLLALARIRRALEQQPLAAGAAPPELQWLRAQCARLSRQLQVLHQRFLRCQVEL 1947
Cdd:TIGR02169 336 AEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEEL 415
|
250
....*....|....*..
gi 81295809 1948 DRRQARRATAHTRVPGA 1964
Cdd:TIGR02169 416 QRLSEELADLNAAIAGI 432
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1541-1991 |
1.21e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.16 E-value: 1.21e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1541 DEFNElaiQKESADRQVLMQEEEIKRLEEMNINIRKKVAQLQEEVEKQknivkgLEQDKEVLKKQQMSSLLLASTLQSTL 1620
Cdd:TIGR02169 166 AEFDR---KKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKA------ERYQALLKEKREYEGYELLKEKEALE 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1621 DagrcpeppsgsppegpeiQLEVTQRALLRRESEVLDLKEQLEKMKGDLESKNEEILHLNLKLDMQNSQTAVSLRELEEE 1700
Cdd:TIGR02169 237 R------------------QKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGE 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1701 NTSlkviytrssEIEELKATIENLQENQKRLQKEKAEEIEQLHEVIEKlqhelslmgpvvHEVSDSQAGSLQSELlcsqa 1780
Cdd:TIGR02169 299 LEA---------EIASLERSIAEKERELEDAEERLAKLEAEIDKLLAE------------IEELEREIEEERKRR----- 352
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1781 ggprgQALQGELEAALEAKEALSRLLADQERRHSQALEALQQRLQGAEEAAElQLAELERNVALREAEVEDMASRIQEFE 1860
Cdd:TIGR02169 353 -----DKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKR-EINELKRELDRLQEELQRLSEELADLN 426
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1861 AALKAKEATIAErnLEidalnqrkaahsAELEAVLLALARIRRALEQQPLAAGAAPPELQWLRAQCARLSRQLQVLhqrf 1940
Cdd:TIGR02169 427 AAIAGIEAKINE--LE------------EEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKL---- 488
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*...
gi 81295809 1941 lrcQVELDRRQARRATAHTRVPGAHPQPRMDG-------GAKAQVtGDVEASHDAALE 1991
Cdd:TIGR02169 489 ---QRELAEAEAQARASEERVRGGRAVEEVLKasiqgvhGTVAQL-GSVGERYATAIE 542
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1660-1912 |
1.62e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 56.70 E-value: 1.62e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1660 EQLEKMKGDLESKNEEILHLNLKLDMQNSQTAVSLRELEEENTSLKviyTRSSEIEELKATIENLQENQKRLQKEkaeeI 1739
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIA---ALARRIRALEQELAALEAELAELEKE----I 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1740 EQLHEVIEKLQHELSLMgpvvheVSDSQAGSLQSELLCsqaggprgqALQGELEAALEAKEALSRLLADQERRHSQALEA 1819
Cdd:COG4942 93 AELRAELEAQKEELAEL------LRALYRLGRQPPLAL---------LLSPEDFLDAVRRLQYLKYLAPARREQAEELRA 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1820 LQQRLQGAEEAAELQLAELERNVALREAEVEDMASRIQEFEAALKAKEATIAERNLEIDALNQRKAAHSAELEAVLLALA 1899
Cdd:COG4942 158 DLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAA 237
|
250
....*....|...
gi 81295809 1900 RIRRALEQQPLAA 1912
Cdd:COG4942 238 AAAERTPAAGFAA 250
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2619-2936 |
1.92e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.37 E-value: 1.92e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2619 KSEQLSRSLCEVQQEVLQLRS---MLSSKENELKAALQELESEQGKGRALQSQL---EEEQLRHLQRESQSAKALEELRA 2692
Cdd:TIGR02168 664 GSAKTNSSILERRREIEELEEkieELEEKIAELEKALAELRKELEELEEELEQLrkeLEELSRQISALRKDLARLEAEVE 743
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2693 SLETQRAQSSRLCVALKHEQTAKDNLQKELRIEHSRCEALLAQERSQLSELQKDLAAEKSRTLELSEALRheRLLTEQLS 2772
Cdd:TIGR02168 744 QLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELT--LLNEEAAN 821
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2773 QRTQEACVHQDTQAHHALLQKLKEEKSRVVDLQAMLEKVQQQALHSQQQLEAEAQKHCEALRREKEVSATLKSTVEALHT 2852
Cdd:TIGR02168 822 LRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSE 901
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2853 QKRELRCSLEREREKPAWLQAELEQSHPRLKEQEGR---KAARRSAEARQSPAAAEQwrkwqrdKEKLRELELQRQRDlh 2929
Cdd:TIGR02168 902 ELRELESKRSELRRELEELREKLAQLELRLEGLEVRidnLQERLSEEYSLTLEEAEA-------LENKIEDDEEEARR-- 972
|
....*..
gi 81295809 2930 KIKQLQQ 2936
Cdd:TIGR02168 973 RLKRLEN 979
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
665-1607 |
2.03e-07 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 57.29 E-value: 2.03e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 665 ERAARVLGLETEHKVQLSLLQTELKEEIELLKIENRNLYGKLQhetrLKDDLEKVKHNLIEDHQKELnNAKQKTELMKQE 744
Cdd:pfam02463 172 KEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQ----LKEKLELEEEYLLYLDYLKL-NEERIDLLQELL 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 745 FQRKETDWKVMKEELQREAEEKLTLMLLELREKAESEKQTIINKFELREAEMRQLQDQQAAQILDLERSLTEQQGRLQQL 824
Cdd:pfam02463 247 RDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKA 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 825 EQDLTsddalhcsqcgrepptaqdgelaalhvkedcalQLMLARSRFLEERKEITEKFSAEqdaflqEAQEQHARELQLL 904
Cdd:pfam02463 327 EKELK---------------------------------KEKEEIEELEKELKELEIKREAE------EEEEEELEKLQEK 367
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 905 QERHQQQLLSVTAELEARHQAALGELTASLESKQGALLAARvaelqtkhaadlgaLETRHLSSLDSLESCYLSEFQTIRE 984
Cdd:pfam02463 368 LEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQ--------------LLLELARQLEDLLKEEKKEELEILE 433
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 985 EHRQALELLRADFEEQLWKKDSLHQTILTQELEKLKRKHEGELQSVRDHLRTEVSTELAGTVAHELQGVHQGEFGSEKKT 1064
Cdd:pfam02463 434 EEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLL 513
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1065 ALHEKEETLRLQSAQAQPFHQEekESLSLQLQKKNHQVQQLKDQVLSLSHEIEECRSELEVLQQRRERENREGANLLSML 1144
Cdd:pfam02463 514 ALIKDGVGGRIISAHGRLGDLG--VAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPL 591
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1145 KADVNLSHSERGALQDALRRLLGLFGETLRAAVTLRSRIGERVGLCLDDAGAGLALSTAPALEETWSDVALpELDRTLSE 1224
Cdd:pfam02463 592 KSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKS-EVKASLSE 670
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1225 CAEMSSVAEISShMRESFLMSPESVRECEQPIRRVFQSLSlavdglmemaLDSSRQLEEARQIHSRFEKEFSFKNEETAQ 1304
Cdd:pfam02463 671 LTKELLEIQELQ-EKAESELAKEEILRRQLEIKKKEQREK----------EELKKLKLEAEELLADRVQEAQDKINEELK 739
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1305 VVRKHQELLECLKEESAAKAELALELHKTQGTLEGFKVETADLKEVLAGKEDSEHRLVLELESLRRQLQQAAQEQAALRE 1384
Cdd:pfam02463 740 LLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEE 819
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1385 EctrlwsrgEATATDAEAREAALRKEVEDLTKEQSETRKQAEKDRSALLSQMKILESELEEQLSQHRGCAKQAEAVTALE 1464
Cdd:pfam02463 820 E--------QLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESK 891
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1465 QQVASLDKHLRNQRQFMDEQAAEREHEREEFQQEIQRLEGQLrqaakpqpwgprDSQQAPLDGEVELLQQKLREKLDEFN 1544
Cdd:pfam02463 892 EEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKY------------EEEPEELLLEEADEKEKEENNKEEEE 959
|
890 900 910 920 930 940
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 81295809 1545 ELAIQKESAdrqvlMQEEEIKRLEEMNINIRKKVAQLQEEVEKQKNIVKGLEQDKEVLKKQQM 1607
Cdd:pfam02463 960 ERNKRLLLA-----KEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEETCQ 1017
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
2485-2810 |
2.25e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.00 E-value: 2.25e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2485 SSLLERLEKIIREQGDLQEK-SLEHLRLPDRSSLLSEIQALRAQLRMTHLQNQEKLQHLRTALTSAEARGSQQEHQL-RR 2562
Cdd:TIGR02169 691 SSLQSELRRIENRLDELSQElSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIeEL 770
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2563 QVELLAYKVEQEKCIAGDLQKTLSEEQEKANSVQKLLAAEQTVVRDLKSDLCESRQKSEQLSRSLCEVQQEVLQL---RS 2639
Cdd:TIGR02169 771 EEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLkeqIK 850
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2640 MLSSKENELKAALQELESEQGKGRALQSQLEEEqLRHLQRESQSAKA-LEELRASLETQRAQSSRLCVALKHEQTAKDNL 2718
Cdd:TIGR02169 851 SIEKEIENLNGKKEELEEELEELEAALRDLESR-LGDLKKERDELEAqLRELERKIEELEAQIEKKRKRLSELKAKLEAL 929
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2719 QKELriehSRCEALLAQERSQLSELQ--KDLAAEKSRTLELSEALRHERLLTEQLSQRTQEAcvHQDTQAHHAllqKLKE 2796
Cdd:TIGR02169 930 EEEL----SEIEDPKGEDEEIPEEELslEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKR--LDELKEKRA---KLEE 1000
|
330
....*....|....
gi 81295809 2797 EKSRVVDLQAMLEK 2810
Cdd:TIGR02169 1001 ERKAILERIEEYEK 1014
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1261-1898 |
3.58e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.48 E-value: 3.58e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1261 QSLSLAVDGLMEMALDSSRQLEEARQIHSRFEKEFSfknEETAQVVRKHQELLECLKEESAAKAELALELHKTQGTLEGF 1340
Cdd:COG1196 228 ELLLLKLRELEAELEELEAELEELEAELEELEAELA---ELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDI 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1341 KVETADLKEVLAGKEDSEHRLvLELESLRRQLQQAAQeqaalreectrlwsrgeatatDAEAREAALRKEVEDLTKEQSE 1420
Cdd:COG1196 305 ARLEERRRELEERLEELEEEL-AELEEELEELEEELE---------------------ELEEELEEAEEELEEAEAELAE 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1421 TRKQAEKDRSALLSQMKILESELEEQLSQHRGCAKQAEAVTALEQQVASLDKHLRNQRQFMDEQAAEREHEREEFQQEIQ 1500
Cdd:COG1196 363 AEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEE 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1501 RLEGQLRQAAkpqpwgprdsqqapldgEVELLQQKLREKLDEFNELAIQKESADRQVLMQEEEIKRLEEMNINIRKKVAQ 1580
Cdd:COG1196 443 ALEEAAEEEA-----------------ELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEG 505
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1581 LQEEVEKQKNIVKGLEQDKEVLkkQQMSSLLLASTLQSTLDAGRCPEPPSGSPPEGPEIQLEVTQRALLRRESEVLDlke 1660
Cdd:COG1196 506 FLEGVKAALLLAGLRGLAGAVA--VLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLD--- 580
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1661 qleKMKGDLESKNEEILHLNLKLdmqnsqtavsLRELEEENTSLKVIYTRSSEIEELKATIENLQENQKRLQKEKAEEie 1740
Cdd:COG1196 581 ---KIRARAALAAALARGAIGAA----------VDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGR-- 645
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1741 qlhEVIEKLQHELSLMGPvvhevsdSQAGSLQSELLCSQAGGPRGQALQGELEAALEAKEALSRLLADQERRHSQALEAL 1820
Cdd:COG1196 646 ---LREVTLEGEGGSAGG-------SLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEE 715
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 81295809 1821 QQRLQGAEEAAELQLAELERNVALREAEVEDMASRIQEFEAALKAKEATIAERnleIDALNQRKAAhsaeLEAV-LLAL 1898
Cdd:COG1196 716 RLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERE---LERLEREIEA----LGPVnLLAI 787
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
374-1001 |
3.94e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 56.46 E-value: 3.94e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 374 EDLQNQFQkELAEQRAELEKIfqdKNQAErALRNLESHHQAaIEKLREDLQsEHGRCLEDLEFKFKEsekEKQLELENLQ 453
Cdd:COG4913 228 DALVEHFD-DLERAHEALEDA---REQIE-LLEPIRELAER-YAAARERLA-ELEYLRAALRLWFAQ---RRLELLEAEL 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 454 ASYEDLKAQSQEEIRRLWSQLDSARtsrQELSELHEQLLAR-TSRVEDLEQLKQREKTQHEsELEQLRIYFEKKLRDAEK 532
Cdd:COG4913 298 EELRAELARLEAELERLEARLDALR---EELDELEAQIRGNgGDRLEQLEREIERLERELE-ERERRRARLEALLAALGL 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 533 TY---QEDLTLLQQRLQGARED--ALLDSVEVGLSCVGLEEKPEKGRKDHV-DELEP-ERHKESLPRFQAELEESHRHQL 605
Cdd:COG4913 374 PLpasAEEFAALRAEAAALLEAleEELEALEEALAEAEAALRDLRRELRELeAEIASlERRKSNIPARLLALRDALAEAL 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 606 EALESPLCIQHEghvsdrcCVETSALGHEWRlEPSEG--HSQELpwvhlqgvqdgDLEADTERAARVL----GLETEHKV 679
Cdd:COG4913 454 GLDEAELPFVGE-------LIEVRPEEERWR-GAIERvlGGFAL-----------TLLVPPEHYAAALrwvnRLHLRGRL 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 680 QLSLLQTELKEE----------IELLKIENRNLYGKLQHETRLKDDLEKVkhnlieDHQKELNNAKQ---KTELMKQEFQ 746
Cdd:COG4913 515 VYERVRTGLPDPerprldpdslAGKLDFKPHPFRAWLEAELGRRFDYVCV------DSPEELRRHPRaitRAGQVKGNGT 588
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 747 RKETDWKVMKEE---LQREAEEKLTLMLLELREkAESEKQTIINKFELREAEMRQLQDQQAA-----QILDLERSLTEQQ 818
Cdd:COG4913 589 RHEKDDRRRIRSryvLGFDNRAKLAALEAELAE-LEEELAEAEERLEALEAELDALQERREAlqrlaEYSWDEIDVASAE 667
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 819 GRLQQLEQDLtsdDALhcsqcgreppTAQDGELAALHVKEDcALQLMLARSRflEERKEITEKFSAEQDAfLQEAQEQHA 898
Cdd:COG4913 668 REIAELEAEL---ERL----------DASSDDLAALEEQLE-ELEAELEELE--EELDELKGEIGRLEKE-LEQAEEELD 730
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 899 RELQLLQERHQQQLLSVTAELEARHQAALG-----ELTASLESKQGAL------LAARVAELQTKHAADLGALETRHLSS 967
Cdd:COG4913 731 ELQDRLEAAEDLARLELRALLEERFAAALGdaverELRENLEERIDALrarlnrAEEELERAMRAFNREWPAETADLDAD 810
|
650 660 670
....*....|....*....|....*....|....
gi 81295809 968 LDSLEScYLSEFQTIREEHrqaLELLRADFEEQL 1001
Cdd:COG4913 811 LESLPE-YLALLDRLEEDG---LPEYEERFKELL 840
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1272-1752 |
3.97e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 56.30 E-value: 3.97e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1272 EMALDSSRQLEEARQIHSRFEKEFSFKNEETAQVVRKHQELLECLKEESAAKAELALElhktqgtLEGFKVETADLKEVL 1351
Cdd:PTZ00121 1211 ERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARR-------QAAIKAEEARKADEL 1283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1352 AGKEDsehrlVLELESLRRQLQQAAQEQAALREECTRLWSRGEATATDAEAREAALRKEVEDLTKEQSETRKQAEKDRSA 1431
Cdd:PTZ00121 1284 KKAEE-----KKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADE 1358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1432 LLS---QMKILESELEEQLSQHRGCAKQAEAVTALEQQVASLDKHLRNQRQFMDEQAAEREHEREEFQQEIQRLEGQLRQ 1508
Cdd:PTZ00121 1359 AEAaeeKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKK 1438
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1509 AAKPQPWGPRDSQQAPLDGEVELLQQKLRE--KLDEFNELAIQKESADRQVLMQEEEIKRLEEMN--INIRKKVAQLQEE 1584
Cdd:PTZ00121 1439 KAEEAKKADEAKKKAEEAKKAEEAKKKAEEakKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKkaAEAKKKADEAKKA 1518
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1585 VEKQK-------NIVKGLEQDKEVLKKQQMSSLLLASTLQSTLDAGRCPEPPSGSPPEGPEI-QLEVTQRALLRRESEVL 1656
Cdd:PTZ00121 1519 EEAKKadeakkaEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALrKAEEAKKAEEARIEEVM 1598
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1657 DLKEQLEKMKGDLESKNEE----------------ILHLNLKLDMQNSQTAVSLRELEEENTSLKVIYTRSSEIEELKAT 1720
Cdd:PTZ00121 1599 KLYEEEKKMKAEEAKKAEEakikaeelkkaeeekkKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAE 1678
|
490 500 510
....*....|....*....|....*....|....*.
gi 81295809 1721 IENLQENQKRLQKE----KAEEIEQLHEVIEKLQHE 1752
Cdd:PTZ00121 1679 EAKKAEEDEKKAAEalkkEAEEAKKAEELKKKEAEE 1714
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
1317-1939 |
4.46e-07 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 55.98 E-value: 4.46e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1317 KEESAAKAELALELHKTQGTLEGFKVETADLKEVLAGKEDSEHRLVLELESLRRQLQQAAQEQAALREECTRLWSRGEAT 1396
Cdd:pfam10174 49 KEEAARISVLKEQYRVTQEENQHLQLTIQALQDELRAQRDLNQLLQQDFTTSPVDGEDKFSTPELTEENFRRLQSEHERQ 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1397 ATDAEAreaaLRKEVEDLtKEQSETRKQAEKDRSalLSQMKILESELEEQLSQhrgcaKQAEAVTALEQQVASLDKHLrn 1476
Cdd:pfam10174 129 AKELFL----LRKTLEEM-ELRIETQKQTLGARD--ESIKKLLEMLQSKGLPK-----KSGEEDWERTRRIAEAEMQL-- 194
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1477 qrQFMDEQAAEREHEREEFQQEIQRlegqlRQAAKPQPWGPRDSQQA--PLDGEVELLQQKLREKLDEFNELaiqKESAD 1554
Cdd:pfam10174 195 --GHLEVLLDQKEKENIHLREELHR-----RNQLQPDPAKTKALQTVieMKDTKISSLERNIRDLEDEVQML---KTNGL 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1555 RQVLMQEEEIKRLEEMNIN---IRKKVAQLQEEVEKQKNIVKGLEQDKEVLKKQQMSSLLLASTLQSTLDAGRCPEPPSG 1631
Cdd:pfam10174 265 LHTEDREEEIKQMEVYKSHskfMKNKIDQLKQELSKKESELLALQTKLETLTNQNSDCKQHIEVLKESLTAKEQRAAILQ 344
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1632 SPPEGPEIQLEVTQRALLRRESEVLDLKEQ-------LEKMKGDLESKNEEILHLNLKLDMQNSQTAVSLRELEEENTSL 1704
Cdd:pfam10174 345 TEVDALRLRLEEKESFLNKKTKQLQDLTEEkstlageIRDLKDMLDVKERKINVLQKKIENLQEQLRDKDKQLAGLKERV 424
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1705 KVIYTRSSEIEELKAT-----------IENLQENQKRLQKEKAEEIEQLHEVIEKLQHELSLMGPVVHEVSDSqAGSLQS 1773
Cdd:pfam10174 425 KSLQTDSSNTDTALTTleealsekeriIERLKEQREREDRERLEELESLKKENKDLKEKVSALQPELTEKESS-LIDLKE 503
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1774 ELLCSQAGGPRGQALQGELEAALEAK-EALSRLLADQERRHSQALEA------------LQQRLQGAEEAAELQLAELER 1840
Cdd:pfam10174 504 HASSLASSGLKKDSKLKSLEIAVEQKkEECSKLENQLKKAHNAEEAVrtnpeindrirlLEQEVARYKEESGKAQAEVER 583
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1841 NV-ALREAEVE--DMASRIQEFE--AALKAKEATIAERNLEiDALNQRKAAHSAELEAVLLALARIRRALEQQPLA--AG 1913
Cdd:pfam10174 584 LLgILREVENEknDKDKKIAELEslTLRQMKEQNKKVANIK-HGQQEMKKKGAQLLEEARRREDNLADNSQQLQLEelMG 662
|
650 660
....*....|....*....|....*.
gi 81295809 1914 AAPPELQWLRAQCARLSRQLQVLHQR 1939
Cdd:pfam10174 663 ALEKTRQELDATKARLSSTQQSLAEK 688
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
222-827 |
4.65e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 56.30 E-value: 4.65e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 222 AITDLESGREDEAGLHQSQAVHGLELEALRLSLSNMHTAQlelTQANLQKEKETALTELREMLNSRRAQELALLQSRQQH 301
Cdd:PTZ00121 1228 AVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFAR---RQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKA 1304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 302 ElELLREQHAREKEEVVLRCGQEAAELKEKLQSEMEKNAQIVKTLKEDWESEKDLCLENLRKELSAKHQSEMEDLQNQFQ 381
Cdd:PTZ00121 1305 D-EAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAA 1383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 382 KELAEQRAELEKIfqdKNQAERALRNLESHHQAAIEKLREDlqsehgrcledlEFKFKESEKEKQLELENlqasyedlKA 461
Cdd:PTZ00121 1384 KKKAEEKKKADEA---KKKAEEDKKKADELKKAAAAKKKAD------------EAKKKAEEKKKADEAKK--------KA 1440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 462 QSQEEIRRLWSQLDSARTSRQELSELHEQLLARTSRvEDLEQLKQREKTQHESELEQLRIYFEKKLRDAEKTYQEdltll 541
Cdd:PTZ00121 1441 EEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAK-KKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADE----- 1514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 542 QQRLQGAREDALLDSVEVGLSCVGLEEKPEKGRKDHVDELEPERHKESLPRFQAELEESHRHQLEALESPLCIQHEghvs 621
Cdd:PTZ00121 1515 AKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAE---- 1590
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 622 drccvetsalghEWRLEPSEGHSQELPWVHLQgvqdgDLEADTERAARVLGLETEHKVQLSLLQTELKEEIELLKIEnrn 701
Cdd:PTZ00121 1591 ------------EARIEEVMKLYEEEKKMKAE-----EAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAE--- 1650
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 702 lygklqhETRLKDDLEKVKHNliEDHQKELNNAKQKTELMK-QEFQRKETDWKVMKEELQREAEEKLTLMLLELREKAES 780
Cdd:PTZ00121 1651 -------ELKKAEEENKIKAA--EEAKKAEEDKKKAEEAKKaEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEEL 1721
|
570 580 590 600
....*....|....*....|....*....|....*....|....*..
gi 81295809 781 EKQTIINKFELREAEMRQLQDQQAAQILDLERsltEQQGRLQQLEQD 827
Cdd:PTZ00121 1722 KKAEEENKIKAEEAKKEAEEDKKKAEEAKKDE---EEKKKIAHLKKE 1765
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
269-510 |
5.54e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.84 E-value: 5.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 269 LQKEKETALTELREMLN-----SRRAQELALLQSRQQHELELLREQHAREKEEvvlrcgqeAAELKEKLQS---EMEKNA 340
Cdd:TIGR02169 686 LKRELSSLQSELRRIENrldelSQELSDASRKIGEIEKEIEQLEQEEEKLKER--------LEELEEDLSSleqEIENVK 757
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 341 QIVKTLKEDWEsEKDLCLENLRKELSAKHQSEMEDLQNQFQKELAEQRAELEKIFQDKNQAERALRNLESHHQAAiEKLR 420
Cdd:TIGR02169 758 SELKELEARIE-ELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYL-EKEI 835
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 421 EDLQ----------SEHGRCLEDLEFK---FKESEKEKQLELENLQASYEDLKaqsqEEIRRLWSQLDSARTSRQELSEL 487
Cdd:TIGR02169 836 QELQeqridlkeqiKSIEKEIENLNGKkeeLEEELEELEAALRDLESRLGDLK----KERDELEAQLRELERKIEELEAQ 911
|
250 260
....*....|....*....|....
gi 81295809 488 HEQLLARTSRV-EDLEQLKQREKT 510
Cdd:TIGR02169 912 IEKKRKRLSELkAKLEALEEELSE 935
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1775-1962 |
8.53e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 54.38 E-value: 8.53e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1775 LLCSQAGGPRGQALQGELEAALEAKEALSRLLADQERRHSQALEALQQrLQGAEEAAELQLAELERNVALREAEVEDMAS 1854
Cdd:COG4942 12 ALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAA-LERRIAALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1855 RIQEFEAALKAKEATIAERNLEIDALNQR-------KAAHSAELEAVLLALARIRRALEQQPLAAGAAPPELQWLRAQCA 1927
Cdd:COG4942 91 EIAELRAELEAQKEELAELLRALYRLGRQpplalllSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELE 170
|
170 180 190
....*....|....*....|....*....|....*
gi 81295809 1928 RLSRQLQVLHQRFLRCQVELDRRQARRATAHTRVP 1962
Cdd:COG4942 171 AERAELEALLAELEEERAALEALKAERQKLLARLE 205
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
222-827 |
9.24e-07 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 55.23 E-value: 9.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 222 AITDLESGREDEAGLhqSQAVHGLELEALRLSLSNMHTAQLELTQANLQKEKETALTELREMLNSRRAQeLALLQSRQQH 301
Cdd:pfam12128 232 AIAGIMKIRPEFTKL--QQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQ-WKEKRDELNG 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 302 ELELLREQHAREKEEVvlrcgqEAAE--LKEKLQSEMEKNAQIVKTLkEDWESEkdlcLENLRKELSA---KHQSEMEDL 376
Cdd:pfam12128 309 ELSAADAAVAKDRSEL------EALEdqHGAFLDADIETAAADQEQL-PSWQSE----LENLEERLKAltgKHQDVTAKY 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 377 QNQFQKELAEQRAELEKIFQD----KNQAERALRNLESHHQAAIEKLREDLQSEHGRcLEDLEFKFKESEKEKQLELENL 452
Cdd:pfam12128 378 NRRRSKIKEQNNRDIAGIKDKlakiREARDRQLAVAEDDLQALESELREQLEAGKLE-FNEEEYRLKSRLGELKLRLNQA 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 453 QASYEDL--KAQSQEEIRRLWSQLDSARTSRQELSElhEQLLARTSRVEDLEQLKQREK--TQHESELEQLRIYFEKKLR 528
Cdd:pfam12128 457 TATPELLlqLENFDERIERAREEQEAANAEVERLQS--ELRQARKRRDQASEALRQASRrlEERQSALDELELQLFPQAG 534
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 529 DAEKTYQEDLTLLQQRLQGAREDALLdsvevglscvgleekpekGRKDHVDELEPERHKESLPRFQAELEeshrhqLEAL 608
Cdd:pfam12128 535 TLLHFLRKEAPDWEQSIGKVISPELL------------------HRTDLDPEVWDGSVGGELNLYGVKLD------LKRI 590
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 609 ESPLCIQHEGHVSDRCCVETSALGHEwrlepSEGHSQELPWVHLQGVQDGDLEADTERAARVLGLETEHKVQLSLLQTEL 688
Cdd:pfam12128 591 DVPEWAASEEELRERLDKAEEALQSA-----REKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQSE 665
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 689 KEEIEllkienrnlygklQHETRLKDDLEKVKHNLieDHQKELNNAKQKteLMKQEFQRKETDWKVMKEELQREAEEklt 768
Cdd:pfam12128 666 KDKKN-------------KALAERKDSANERLNSL--EAQLKQLDKKHQ--AWLEEQKEQKREARTEKQAYWQVVEG--- 725
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 81295809 769 lmllELREKAESEKQTIINKFELREAEMRQLQDQQAAQ----------ILDLERSLTEQQGRLQQLEQD 827
Cdd:pfam12128 726 ----ALDAQLALLKAAIAARRSGAKAELKALETWYKRDlaslgvdpdvIAKLKREIRTLERKIERIAVR 790
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
272-823 |
1.06e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.15 E-value: 1.06e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 272 EKETALTELREMLNSRRAQELALLQSRQQHELELLREQHAREKEEVV---------LRCGQEAAELKEKLQSEMEKNAQI 342
Cdd:PTZ00121 1209 EEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRkfeearmahFARRQAAIKAEEARKADELKKAEE 1288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 343 VKTLKEDWESEKDLCLENLRKELSAKHQSEMEDLQNQFQKELAE---QRAELEKIFQD--KNQAERALRNLE-SHHQAAI 416
Cdd:PTZ00121 1289 KKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADaakKKAEEAKKAAEaaKAEAEAAADEAEaAEEKAEA 1368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 417 EKLRED----------LQSEHGRCLEDLEFKFKESEKE----KQLELENLQASYEDLKAQSQEEIRRLWSQLDSARTS-- 480
Cdd:PTZ00121 1369 AEKKKEeakkkadaakKKAEEKKKADEAKKKAEEDKKKadelKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKAde 1448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 481 ---RQELSELHEQLLARTSRVEDLEQLKQR-EKTQHESELEQLRIYFEKKLRDAEKTYQEDLTLLQQR-LQGAREDALLD 555
Cdd:PTZ00121 1449 akkKAEEAKKAEEAKKKAEEAKKADEAKKKaEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKkAEEAKKADEAK 1528
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 556 SVEVGLSCVGLEEKPEKGRKDHVDELEPERHKESLPRFQAELEESHRHQLEALESPLCIQHEghvSDRCCVETSALGHEW 635
Cdd:PTZ00121 1529 KAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAE---EARIEEVMKLYEEEK 1605
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 636 RLEPSEGHSQELPWVHLQGVQDGDLEADTERAARVLGLETEHKVQlsllqtELKEEIELLKIENRNLYGKLQHETRLKDD 715
Cdd:PTZ00121 1606 KMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAE------ELKKAEEENKIKAAEEAKKAEEDKKKAEE 1679
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 716 LEKVKHnliEDHQKELNNAKQKTELMKQEFQRKETDWKVMKEELQREAEEKLTLMLLELREKAESEKQTiINKFELREAE 795
Cdd:PTZ00121 1680 AKKAEE---DEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKK-AEEAKKDEEE 1755
|
570 580
....*....|....*....|....*...
gi 81295809 796 MRQLQDQQAAQILDLERSLTEQQGRLQQ 823
Cdd:PTZ00121 1756 KKKIAHLKKEEEKKAEEIRKEKEAVIEE 1783
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
279-1139 |
1.19e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 54.76 E-value: 1.19e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 279 ELREMLNSRRAQELALLQSRQQHElELLREQHAREKEEVvlRCGQEAAELKEKLQSEMEKNAQIVKTLKEDWESEKDLCL 358
Cdd:PTZ00121 1138 DARKAEEARKAEDAKRVEIARKAE-DARKAEEARKAEDA--KKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKA 1214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 359 ENLRKELSAKHQSEMEDLQNQFQKELAEQRAELEKIFQDKNQAERALRNLESHHQAAIeklredlQSEHGRCLEDLEfKF 438
Cdd:PTZ00121 1215 EEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAI-------KAEEARKADELK-KA 1286
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 439 KESEKEKQLELENLQASYEDLKAQSQEEirrlwSQLDSARTSRQELSELHEQLLARTSRVEDLEQLKQREKTQHESELEQ 518
Cdd:PTZ00121 1287 EEKKKADEAKKAEEKKKADEAKKKAEEA-----KKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEA 1361
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 519 LRiyfEKKLRDAEKTYQEDltllqqrlqgAREDALLDSVEVGLSCVGLEEKPEKGRK--DHVDELEPERHKESLPRFQAE 596
Cdd:PTZ00121 1362 AE---EKAEAAEKKKEEAK----------KKADAAKKKAEEKKKADEAKKKAEEDKKkaDELKKAAAAKKKADEAKKKAE 1428
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 597 leesHRHQLEALESPlciqheghvsdrccVETSALGHEWRLEPSEGHSQElpwvhlqgvqDGDLEADTERAARVLGLETE 676
Cdd:PTZ00121 1429 ----EKKKADEAKKK--------------AEEAKKADEAKKKAEEAKKAE----------EAKKKAEEAKKADEAKKKAE 1480
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 677 HKVQLSllqtELKEEIELLKIENRNLYgKLQHETRLKDDLEKVKHNLIEDHQKELNNAKQKTELMKQEFQRKETDwkVMK 756
Cdd:PTZ00121 1481 EAKKAD----EAKKKAEEAKKKADEAK-KAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADE--LKK 1553
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 757 EELQREAEEKltlmllelrEKAESEKqtiinkfelREAEMRQLQDQQAAQILDLERSLTEQQGRLQQLEQDLTSDDALHC 836
Cdd:PTZ00121 1554 AEELKKAEEK---------KKAEEAK---------KAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKA 1615
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 837 SQcgrepptaqdgelaalhvkedcalqlmlARSRFLEERKEITEKFSAEQDAFLQEAQEQHARELqllqeRHQQQLLSVT 916
Cdd:PTZ00121 1616 EE----------------------------AKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEEL-----KKAEEENKIK 1662
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 917 AELEARHQAalgeltaslESKQGALLAARVAELQTKHAADLGALETrhlssldslESCYLSEFQTIREEHRQALELLRAD 996
Cdd:PTZ00121 1663 AAEEAKKAE---------EDKKKAEEAKKAEEDEKKAAEALKKEAE---------EAKKAEELKKKEAEEKKKAEELKKA 1724
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 997 FEEQLWKKDSLHQtilTQELEKLK----RKHEGELQSVRdHLRTEVSTElAGTVAHELQGVHQGEFGSEKKTALHEKEET 1072
Cdd:PTZ00121 1725 EEENKIKAEEAKK---EAEEDKKKaeeaKKDEEEKKKIA-HLKKEEEKK-AEEIRKEKEAVIEEELDEEDEKRRMEVDKK 1799
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 81295809 1073 LRLQSAQAQPFHQEEKESLSLQLQKKNHQVQQLKDQVLSLSHEIEECRsELEVLQQRRERENREGAN 1139
Cdd:PTZ00121 1800 IKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQLEEAD-AFEKHKFNKNNENGEDGN 1865
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1532-1872 |
1.25e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 54.69 E-value: 1.25e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1532 LQQKLRE-----KLDEFNELAIQKESADRQVLMQEEEIKRLEEMNINIRKKVAQLQEEVEKQKNIVKGLEQDKEVLKKQQ 1606
Cdd:TIGR02169 216 LLKEKREyegyeLLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEK 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1607 MSSLllastlqsTLDAGRCPEPPSGSPPegpeiQLEVTQRALLRRESEVLDLKEQLEKMKGDLESKNEEILHLNLKLDMQ 1686
Cdd:TIGR02169 296 IGEL--------EAEIASLERSIAEKER-----ELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAEL 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1687 NSQTAVSLRELEEENTSLKVIYTRSS----EIEELKATIENLQENQKRLQkekaEEIEQLHEVIEKLQHELslmgpvvhE 1762
Cdd:TIGR02169 363 KEELEDLRAELEEVDKEFAETRDELKdyreKLEKLKREINELKRELDRLQ----EELQRLSEELADLNAAI--------A 430
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1763 VSDSQAGSLQSELLcsqaggprgqALQGELEAALEAKEALSRLLADQERRHSQaLEALQQRLQGAEEAAELQLAELERNV 1842
Cdd:TIGR02169 431 GIEAKINELEEEKE----------DKALEIKKQEWKLEQLAADLSKYEQELYD-LKEEYDRVEKELSKLQRELAEAEAQA 499
|
330 340 350
....*....|....*....|....*....|
gi 81295809 1843 ALREAEVEDMASRIQEFEAALKAKEATIAE 1872
Cdd:TIGR02169 500 RASEERVRGGRAVEEVLKASIQGVHGTVAQ 529
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
2489-2931 |
1.51e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 54.35 E-value: 1.51e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2489 ERLEKIIREQGDlQEKSLEhlRLPDRSSLLSEIQALRAQLRMTHLQNQ-EKLQHLRTALTSAEARGSQQEHQLRRQVELL 2567
Cdd:pfam15921 74 EHIERVLEEYSH-QVKDLQ--RRLNESNELHEKQKFYLRQSVIDLQTKlQEMQMERDAMADIRRRESQSQEDLRNQLQNT 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2568 AYKVEQEKCIAGDLQKTLSEEQEKansVQKLLAAEQTVVRDLKSDLCESRQKSEQ-------------------LSRSLC 2628
Cdd:pfam15921 151 VHELEAAKCLKEDMLEDSNTQIEQ---LRKMMLSHEGVLQEIRSILVDFEEASGKkiyehdsmstmhfrslgsaISKILR 227
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2629 EVQQEVL-----------QLRSMLSSKENELKAALQELE----------------------SEQGKGRALQSQLEEEQLR 2675
Cdd:pfam15921 228 ELDTEISylkgrifpvedQLEALKSESQNKIELLLQQHQdrieqliseheveitgltekasSARSQANSIQSQLEIIQEQ 307
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2676 HLQRESQSAKALEELRASLETQRaqsSRLCVALKHEQTAKDNLQKELRIEHSR-CEAllAQERSQLS--------ELQKD 2746
Cdd:pfam15921 308 ARNQNSMYMRQLSDLESTVSQLR---SELREAKRMYEDKIEELEKQLVLANSElTEA--RTERDQFSqesgnlddQLQKL 382
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2747 LAAEKSRTLELS-EALRHERL-------------LTEQLSQRTQEacvhqdTQAHHALLQKLKEEKSRVVDLQAMLEKVQ 2812
Cdd:pfam15921 383 LADLHKREKELSlEKEQNKRLwdrdtgnsitidhLRRELDDRNME------VQRLEALLKAMKSECQGQMERQMAAIQGK 456
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2813 QQALHSQQQLEAEAQKHCEALRREKEVSATLKSTVEALHTQKRELRCSLEREREKPAWLQAELEQSHPR--LKEQEGRKA 2890
Cdd:pfam15921 457 NESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRvdLKLQELQHL 536
|
490 500 510 520
....*....|....*....|....*....|....*....|.
gi 81295809 2891 ARRSAEARQSPAAAEQWRKWQRDKEKLRELELQRQRDLHKI 2931
Cdd:pfam15921 537 KNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQL 577
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
2523-2965 |
1.65e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 54.46 E-value: 1.65e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2523 ALRAQLRMTHLQNQEKLQHLRTALTSAEARGSQQEHQLRR-----------QVELLAYKVEQEKCIAGDLQ---KTLSEE 2588
Cdd:pfam12128 287 ELNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSELEAledqhgafldaDIETAAADQEQLPSWQSELEnleERLKAL 366
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2589 QEKANSVQ------KLLAAEQ--TVVRDLKSDLCESRQ-KSEQLSRSLCEVQQEVLQLRSMLSSKENELKAALQELESEQ 2659
Cdd:pfam12128 367 TGKHQDVTakynrrRSKIKEQnnRDIAGIKDKLAKIREaRDRQLAVAEDDLQALESELREQLEAGKLEFNEEEYRLKSRL 446
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2660 G--KGRALQSQLEEEQLRHLQresQSAKALEELRASLETQRAQSSRLCVALKHEQTAKDNLQKELRIEHSRcealLAQER 2737
Cdd:pfam12128 447 GelKLRLNQATATPELLLQLE---NFDERIERAREEQEAANAEVERLQSELRQARKRRDQASEALRQASRR----LEERQ 519
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2738 SQLSELQKDLAAEKSRTLELseaLRHERLLTEQLSQRTQEACVHQDTQAHHALLQKLKEEKSRVVDLQAMLEKVQQQA-L 2816
Cdd:pfam12128 520 SALDELELQLFPQAGTLLHF---LRKEAPDWEQSIGKVISPELLHRTDLDPEVWDGSVGGELNLYGVKLDLKRIDVPEwA 596
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2817 HSQQQLEAEAQKHCEALRREKEVSATLKSTVEALHTQKRELrcSLEREREKPAWLQAEL-------EQSHPRLKEQEGRK 2889
Cdd:pfam12128 597 ASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKA--SREETFARTALKNARLdlrrlfdEKQSEKDKKNKALA 674
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 81295809 2890 AARRSAEARQSPAAAEQwrkWQRDKEKLRELELQRQRDLHKIKQLQQTVRDLESKDEVPGSRLHLGSARRAAGSDA 2965
Cdd:pfam12128 675 ERKDSANERLNSLEAQL---KQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGALDAQLALLKAAIAARRSGAKA 747
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1282-1893 |
2.16e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 53.99 E-value: 2.16e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1282 EEARQIHSRFEKEFSFKNE--ETAQVVRKHQELL---ECLKEESAAKAELALELHKTQGTLEGFKVETA----DLKEVLA 1352
Cdd:PTZ00121 1101 EEAKKTETGKAEEARKAEEakKKAEDARKAEEARkaeDARKAEEARKAEDAKRVEIARKAEDARKAEEArkaeDAKKAEA 1180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1353 GKEDSEHRLVLEL---ESLRRQLQQAAQEQAALREECTRLwsrgeatatdAEAREAALRKEVEDLTKEQSETRKqAEKDR 1429
Cdd:PTZ00121 1181 ARKAEEVRKAEELrkaEDARKAEAARKAEEERKAEEARKA----------EDAKKAEAVKKAEEAKKDAEEAKK-AEEER 1249
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1430 SAllSQMKILESELEEQLSQHRGCAKQAEAVTALEQQVASLDKHLRNQRQFMDEQAAEREHEREEFQQEIQRLEGQLRQA 1509
Cdd:PTZ00121 1250 NN--EEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEA 1327
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1510 AKPQPWGPRDSQQAPLDGEVELLQQKLREKldefnELAIQKESADRQVLMQEEEIKRLEEMninirKKVAqlqEEVEKQK 1589
Cdd:PTZ00121 1328 KKKADAAKKKAEEAKKAAEAAKAEAEAAAD-----EAEAAEEKAEAAEKKKEEAKKKADAA-----KKKA---EEKKKAD 1394
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1590 NIVKGLEQDK----EVLKKQQMSSLllASTLQSTLDAGRCPEPPSGSPPEGPEIQlEVTQRALLRRESEVLDLKEQLEKM 1665
Cdd:PTZ00121 1395 EAKKKAEEDKkkadELKKAAAAKKK--ADEAKKKAEEKKKADEAKKKAEEAKKAD-EAKKKAEEAKKAEEAKKKAEEAKK 1471
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1666 KGDLESKNEEILHLN--LKLDMQNSQTAVSLRELEEENTslKVIYTRSSE----IEELKATIE--NLQENQKRLQKEKAE 1737
Cdd:PTZ00121 1472 ADEAKKKAEEAKKADeaKKKAEEAKKKADEAKKAAEAKK--KADEAKKAEeakkADEAKKAEEakKADEAKKAEEKKKAD 1549
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1738 EIEQLHEVieKLQHELSLMGPVVHEVSDSQAGSLQSELLcsqaggprGQALQGELEAALEAKEALSRLLADQERRHSQAL 1817
Cdd:PTZ00121 1550 ELKKAEEL--KKAEEKKKAEEAKKAEEDKNMALRKAEEA--------KKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAK 1619
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 81295809 1818 EALQQRLQGAEEAAELQLAELERNVALREAE---VEDMASRIQEFEAALKAKEATIAERNLEIDALNQRKAAHSAELEA 1893
Cdd:PTZ00121 1620 IKAEELKKAEEEKKKVEQLKKKEAEEKKKAEelkKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEA 1698
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1409-1753 |
2.62e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 53.49 E-value: 2.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1409 KEVEDLTKEQSETRKQAEKDRSALlSQMKILESELEEQLSQHrgcakQAEAVTALEQQVASLDKHLRNQRQFMDEQAAER 1488
Cdd:TIGR04523 253 TQLNQLKDEQNKIKKQLSEKQKEL-EQNNKKIKELEKQLNQL-----KSEISDLNNQKEQDWNKELKSELKNQEKKLEEI 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1489 EHEREEFQQEIQRLEGQLRQAAKpqpwgprdsQQAPLDGEVELLQQKLREKLDEFNELAIQKESadrqvlmQEEEIKRLE 1568
Cdd:TIGR04523 327 QNQISQNNKIISQLNEQISQLKK---------ELTNSESENSEKQRELEEKQNEIEKLKKENQS-------YKQEIKNLE 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1569 EmNINIRKKVAQLQEEVEKQKNI-VKGLEQDKEVLKKQQMSSLLLASTLQSTLDagrcpepPSGSPPEGPEIQLEVTQRA 1647
Cdd:TIGR04523 391 S-QINDLESKIQNQEKLNQQKDEqIKKLQQEKELLEKEIERLKETIIKNNSEIK-------DLTNQDSVKELIIKNLDNT 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1648 LLRRESEVLDLKEQLEKMKGDLESKNEEILHLNLKLDMQNSQTavslRELEEENTSLKviytrsSEIEELKatienlqEN 1727
Cdd:TIGR04523 463 RESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEK----KELEEKVKDLT------KKISSLK-------EK 525
|
330 340
....*....|....*....|....*....
gi 81295809 1728 QKRLQKEKAE---EIEQLHEVIEKLQHEL 1753
Cdd:TIGR04523 526 IEKLESEKKEkesKISDLEDELNKDDFEL 554
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
269-609 |
2.94e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.53 E-value: 2.94e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 269 LQKEKETAL--TELREMLNSRRAQELAllqsrqqHELELLREQHAREKEEVvlrcgQEAAELKEKLQSEMEknaQIVKTL 346
Cdd:TIGR02169 203 LRREREKAEryQALLKEKREYEGYELL-------KEKEALERQKEAIERQL-----ASLEEELEKLTEEIS---ELEKRL 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 347 KEdwesekdlcLENLRKELSAKHQSEMEDLQNQFQKELAEQRAELEkifqdknQAERALRNLESHHQAAIEKLREdLQSE 426
Cdd:TIGR02169 268 EE---------IEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIA-------SLERSIAEKERELEDAEERLAK-LEAE 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 427 HGRCLEDLEfKFKESEKEKQLELENLQASYEDLKaqsqeeirrlwsqlDSARTSRQELSELHEQllARTSRVEDLEQLKQ 506
Cdd:TIGR02169 331 IDKLLAEIE-ELEREIEEERKRRDKLTEEYAELK--------------EELEDLRAELEEVDKE--FAETRDELKDYREK 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 507 REKTQHesELEQLRIYfEKKLRDAEKTYQEDLTLLQQRLQGARED-ALLDSV--EVGLSCVGLEEKPEKGRKDHVD-ELE 582
Cdd:TIGR02169 394 LEKLKR--EINELKRE-LDRLQEELQRLSEELADLNAAIAGIEAKiNELEEEkeDKALEIKKQEWKLEQLAADLSKyEQE 470
|
330 340
....*....|....*....|....*..
gi 81295809 583 PERHKESLPRFQAELEESHRhQLEALE 609
Cdd:TIGR02169 471 LYDLKEEYDRVEKELSKLQR-ELAEAE 496
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
261-536 |
2.98e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 53.10 E-value: 2.98e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 261 QLELTQANlqkekeTALTELREMLNSRRAQELALLQSRQQHELELLREQHAREKEEvvlrcgqeaaelKEKLQSEMEKNA 340
Cdd:TIGR04523 273 QKELEQNN------KKIKELEKQLNQLKSEISDLNNQKEQDWNKELKSELKNQEKK------------LEEIQNQISQNN 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 341 QIVKTLKEDwesekdlcLENLRKELSAKhQSEMEDLQnqfqKELAEQRAELEKIFQDKNQAERALRNLESHhqaaIEKLR 420
Cdd:TIGR04523 335 KIISQLNEQ--------ISQLKKELTNS-ESENSEKQ----RELEEKQNEIEKLKKENQSYKQEIKNLESQ----INDLE 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 421 EDLQsehgrcledlefKFKESEKEKQLELENLQASYEDLkaqsQEEIRRLWSQLDSartSRQELSELHEQLLARTSRVED 500
Cdd:TIGR04523 398 SKIQ------------NQEKLNQQKDEQIKKLQQEKELL----EKEIERLKETIIK---NNSEIKDLTNQDSVKELIIKN 458
|
250 260 270
....*....|....*....|....*....|....*.
gi 81295809 501 LEQLKQREKTQheseLEQLRIYFEKKLRDAEKTYQE 536
Cdd:TIGR04523 459 LDNTRESLETQ----LKVLSRSINKIKQNLEQKQKE 490
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
240-519 |
3.19e-06 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 53.42 E-value: 3.19e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 240 QAVHGLELEALRLSLSNMHTAQLELTQANLQKEKETALTELREMlnsrrAQELALLQ-SRQQHElellreqharekeevv 318
Cdd:COG3096 417 QAVQALEKARALCGLPDLTPENAEDYLAAFRAKEQQATEEVLEL-----EQKLSVADaARRQFE---------------- 475
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 319 lrcgqEAAELKEKLQSEMEKNA--QIVKTLKEDWESEKDLC--LENLRKELS-----AKHQSEMEDLQNQFQKELAEQRA 389
Cdd:COG3096 476 -----KAYELVCKIAGEVERSQawQTARELLRRYRSQQALAqrLQQLRAQLAeleqrLRQQQNAERLLEEFCQRIGQQLD 550
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 390 ELEKIFqdknqaeralrnlesHHQAAIEKLREDLQSEHGRCLEDLefkfkeseKEKQLELENLQASYEDLKAQ------S 463
Cdd:COG3096 551 AAEELE---------------ELLAELEAQLEELEEQAAEAVEQR--------SELRQQLEQLRARIKELAARapawlaA 607
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 81295809 464 QEEIRRLWSQLDSARTSRQELSELHEQLLARTSRVEDLEQLKQREKTQHESELEQL 519
Cdd:COG3096 608 QDALERLREQSGEALADSQEVTAAMQQLLEREREATVERDELAARKQALESQIERL 663
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1652-1932 |
3.50e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 52.52 E-value: 3.50e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1652 ESEVLDLKEQLEKMKGDLESKNEEILHLNLKLDmqnsqtavslrELEEENTSLKViytrssEIEELKATIENLQENQKRL 1731
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELE-----------ELNEEYNELQA------ELEALQAEIDKLQAEIAEA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1732 QKEKAEEIEQLHEVIEKLQHELSLMGPVVHEVSDSQAGSLQSELLCSQAGGPRGQALQGELEAALEAKEALSRLLADQEr 1811
Cdd:COG3883 78 EAEIEERREELGERARALYRSGGSVSYLDVLLGSESFSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKL- 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1812 rhsQALEALQQRLQGAEEAAELQLAELERNVALREAEVEDMASRIQEFEAALKAKEATIAERNLEIDALNQRKAAHSAEL 1891
Cdd:COG3883 157 ---AELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAA 233
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 81295809 1892 EAVllALARIRRALEQQPLAAGAAPPELQWLRAQCARLSRQ 1932
Cdd:COG3883 234 AAA--AAAAAAAASAAGAGAAGAAGAAAGSAGAAGAAAGAA 272
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
348-988 |
3.63e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 53.12 E-value: 3.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 348 EDWESEKDLCLENLRKELSAKHQSEMEDLQNQFQKELAEQRAELEKIFQDKNQAERALRNLESHHQAAIEKLRE--DLQS 425
Cdd:PRK02224 179 ERVLSDQRGSLDQLKAQIEEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREEleTLEA 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 426 EhgrcLEDLEFKFKESEKEKqlelenlqasyEDLKAQSQEEIRRLwSQLDSARTSRQELSELHEqllARTSRVEDLEQLK 505
Cdd:PRK02224 259 E----IEDLRETIAETERER-----------EELAEEVRDLRERL-EELEEERDDLLAEAGLDD---ADAEAVEARREEL 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 506 QREKTQHESELEQLRIYFEKKLRDAEkTYQEDLTLLQQRLQGAREDALLDSVEVGLSCVGLEEkpekgRKDHVDELEpER 585
Cdd:PRK02224 320 EDRDEELRDRLEECRVAAQAHNEEAE-SLREDADDLEERAEELREEAAELESELEEAREAVED-----RREEIEELE-EE 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 586 HKESLPRFQ---AELEESHRHQLEALEsplciQHEGHVSDRCCVETSALGHEWRLEPSE-----GHSQELPwvhlQGVQD 657
Cdd:PRK02224 393 IEELRERFGdapVDLGNAEDFLEELRE-----ERDELREREAELEATLRTARERVEEAEalleaGKCPECG----QPVEG 463
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 658 -GDLEADTERAARVLGLETEhKVQLSLLQTELKEEIELLKienrnlyGKLQHETRLKDDLEKVK--HNLIEDHQKELNNA 734
Cdd:PRK02224 464 sPHVETIEEDRERVEELEAE-LEDLEEEVEEVEERLERAE-------DLVEAEDRIERLEERREdlEELIAERRETIEEK 535
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 735 KQKTELMKQEfqrketdwkvmKEELQREAEEKltlmllelREKAesekqtiinkfelreAEMRQLQDQQAAQILDLERSL 814
Cdd:PRK02224 536 RERAEELRER-----------AAELEAEAEEK--------REAA---------------AEAEEEAEEAREEVAELNSKL 581
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 815 TEQQGRLQQLEQDLTSDDALhcSQCGREPPTAQDgELAALHVKEDcalqlmLARSRFLEERKEITEKFSAEQDAFLQEAQ 894
Cdd:PRK02224 582 AELKERIESLERIRTLLAAI--ADAEDEIERLRE-KREALAELND------ERRERLAEKRERKRELEAEFDEARIEEAR 652
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 895 EQHARelqllQERHQQQLLSVTAELEARH---QAALGELTASLEskqgallaaRVAELQTKH---AADLGALETRHlSSL 968
Cdd:PRK02224 653 EDKER-----AEEYLEQVEEKLDELREERddlQAEIGAVENELE---------ELEELRERRealENRVEALEALY-DEA 717
|
650 660
....*....|....*....|
gi 81295809 969 DSLESCYLsefqTIREEHRQ 988
Cdd:PRK02224 718 EELESMYG----DLRAELRQ 733
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
251-539 |
3.66e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 53.14 E-value: 3.66e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 251 RLSLSNMHTAQLEltqaNLQKEKETALTELREMLNSRRAQELALLQSRQQHELELLREQ--HAREK-EEVVLRCGQEAAE 327
Cdd:PRK03918 450 RKELLEEYTAELK----RIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQlkELEEKlKKYNLEELEKKAE 525
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 328 LKEKLQSEMEKNAQIVKTLKEDWESEKDL---------CLENLRKELSAKHQsEMEDLQNQFQKELAEQRAELEKIFQDK 398
Cdd:PRK03918 526 EYEKLKEKLIKLKGEIKSLKKELEKLEELkkklaelekKLDELEEELAELLK-ELEELGFESVEELEERLKELEPFYNEY 604
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 399 NQAERALRNLEShhqaaIEKLREDLQSEHGRCLEDLEFKFKESEKEKQlELENLQASY-EDLKAQSQEEIRRLWSQLDSA 477
Cdd:PRK03918 605 LELKDAEKELER-----EEKELKKLEEELDKAFEELAETEKRLEELRK-ELEELEKKYsEEEYEELREEYLELSRELAGL 678
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 81295809 478 RTSRQELSELHEQLlarTSRVEDL-EQLKQREKTQHESELEQLRIYFEKKLRDAEKTYQEDLT 539
Cdd:PRK03918 679 RAELEELEKRREEI---KKTLEKLkEELEEREKAKKELEKLEKALERVEELREKVKKYKALLK 738
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2668-2982 |
4.23e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 52.75 E-value: 4.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2668 QLEEEQLRHLQRESQSAKALEELRASLETQRAQSSRLCVALKHEQTAKDNLQKELRIEHSRCEAlLAQERSQLSELQKDL 2747
Cdd:TIGR02168 681 ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQ-LEERIAQLSKELTEL 759
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2748 AAEKSRTLELSEALRHERLLTEQLSQrTQEACVHQDTQAHHALLQKLKEEKSRVVDLQAMLEKVQQQALHSQQQLeAEAQ 2827
Cdd:TIGR02168 760 EAEIEELEERLEEAEEELAEAEAEIE-ELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRI-AATE 837
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2828 KHCEALRREKEVSATLKSTVEALHTQKRELRCSLEREREKpawLQAELEQSHPRLKEQEGRKAARRSAEARQSPAAAEQW 2907
Cdd:TIGR02168 838 RRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEA---LLNERASLEEALALLRSELEELSEELRELESKRSELR 914
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 81295809 2908 RKWQRDKEKLRELELQRQRDLHKIKQLQQTVRDLESKDEVPGSRLHLGSArraagSDADHLREQQRELEAMRQRL 2982
Cdd:TIGR02168 915 RELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIE-----DDEEEARRRLKRLENKIKEL 984
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1532-1956 |
4.49e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 52.73 E-value: 4.49e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1532 LQQKLREKLDEFNELAIQKESADRQVLMQEEEIKRLEEMniniRKKVAQLQEEVEKQKNIVKGLEQDKEVLKKQQMSSLL 1611
Cdd:PRK02224 211 LESELAELDEEIERYEEQREQARETRDEADEVLEEHEER----REELETLEAEIEDLRETIAETEREREELAEEVRDLRE 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1612 LASTLQSTLDAGRCPEPPSGSPPEGPEIQLEVTQRALLRRESEVLDLKEQLEKMKGDLESKNEEILhlnlKLDMQNSQTA 1691
Cdd:PRK02224 287 RLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDAD----DLEERAEELR 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1692 VSLRELEEENTSLKV-IYTRSSEIEELKATIENLQE----------NQKRLQKEKAEEIEQLHEVIEKLQHELSLMGPVV 1760
Cdd:PRK02224 363 EEAAELESELEEAREaVEDRREEIEELEEEIEELRErfgdapvdlgNAEDFLEELREERDELREREAELEATLRTARERV 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1761 HEvsdsqAGSLQSELLCSQAGGP-RGQALQGELEAALEAKEALSRLLADQERRHsqalEALQQRLQGAEEaaelqLAELE 1839
Cdd:PRK02224 443 EE-----AEALLEAGKCPECGQPvEGSPHVETIEEDRERVEELEAELEDLEEEV----EEVEERLERAED-----LVEAE 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1840 RNVALREAEVEDMASRIQEfeaalkaKEATIAERNLEIDALNQRKAAHSAELEAVLLALARIRRALEQQPLAAGAAPPEL 1919
Cdd:PRK02224 509 DRIERLEERREDLEELIAE-------RRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKL 581
|
410 420 430
....*....|....*....|....*....|....*..
gi 81295809 1920 QWLRAQCARLSRQLQVLHQRfLRCQVELDRRQARRAT 1956
Cdd:PRK02224 582 AELKERIESLERIRTLLAAI-ADAEDEIERLREKREA 617
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1343-1938 |
5.44e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 52.66 E-value: 5.44e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1343 ETADLKEVLAGKEDSEHRLVLELESLRRQLQQAAQEQAALREEctrlwsrgeATATDAEAREAALRKEVEDLTK-----E 1417
Cdd:TIGR00618 227 ELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARI---------EELRAQEAVLEETQERINRARKaaplaA 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1418 QSETRKQAEKDRSALLSQMKILESELEEQLSQHRGCAKQ---AEAVTALEQQVASLDKHLRNQ------RQFMDEQAAER 1488
Cdd:TIGR00618 298 HIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQqssIEEQRRLLQTLHSQEIHIRDAhevatsIREISCQQHTL 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1489 EHEREEFQQEIQRLEGQLRQAAKPQPWGPRD-SQQAPLDGEVELLQQKLrekLDEFNELAIQKESADRQVLMQEEEIKRL 1567
Cdd:TIGR00618 378 TQHIHTLQQQKTTLTQKLQSLCKELDILQREqATIDTRTSAFRDLQGQL---AHAKKQQELQQRYAELCAAAITCTAQCE 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1568 EEMNINIRKKVAQLQEEVEKQKNIVKGLEQDKEVlKKQQMSSLLLASTLQSTLdagrCPEPPSGSPPEGPEIQLEVTQRA 1647
Cdd:TIGR00618 455 KLEKIHLQESAQSLKEREQQLQTKEQIHLQETRK-KAVVLARLLELQEEPCPL----CGSCIHPNPARQDIDNPGPLTRR 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1648 LLRRESEVLDLKEQLEKMKGDLESKNEEILHLnlkldmqnsqtavSLRELEEENTSLKVIYTRSSEIEELKATIENLQEN 1727
Cdd:TIGR00618 530 MQRGEQTYAQLETSEEDVYHQLTSERKQRASL-------------KEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRL 596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1728 QKRLQKEKAEEI---EQLHEVIEKLQHELSLMGPVVHEVSDSQagSLQSELLCSQaggprgqalQGELEAALEAKEALSR 1804
Cdd:TIGR00618 597 QDLTEKLSEAEDmlaCEQHALLRKLQPEQDLQDVRLHLQQCSQ--ELALKLTALH---------ALQLTLTQERVREHAL 665
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1805 LLADQERRHSQALEALQQRLQGAEEAAELQLAELERNVALREAEVEDMASRIQEFEAALKAKEATIAERNLEIDALNQRK 1884
Cdd:TIGR00618 666 SIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSL 745
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....
gi 81295809 1885 AAHSAELEAVLLALARIRRALEQQPLAAGAAPPELQWLRAQCARLSRQLQVLHQ 1938
Cdd:TIGR00618 746 KELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTH 799
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1525-1893 |
5.76e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 52.43 E-value: 5.76e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1525 LDGEVELLQQKLREKLDEFNelAIQKESADRQVLMQEEEIKRLEEMNINIRKKVAQLQEEVEKQKNIVKGLEQDKEVLKK 1604
Cdd:pfam15921 229 LDTEISYLKGRIFPVEDQLE--ALKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQE 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1605 QQMSS----LLLASTLQSTLDAGRCPEPPSGSPPEGPEIQLEV-------------TQRALLRRESEVLDlkEQLEKMKG 1667
Cdd:pfam15921 307 QARNQnsmyMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKqlvlanseltearTERDQFSQESGNLD--DQLQKLLA 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1668 DLESKNEEIL---HLNLKL---DMQNSQTAVSLR-ELEEENTSLKVIytrSSEIEELKATIENLQENQKRLQKEKAEEIE 1740
Cdd:pfam15921 385 DLHKREKELSlekEQNKRLwdrDTGNSITIDHLRrELDDRNMEVQRL---EALLKAMKSECQGQMERQMAAIQGKNESLE 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1741 QLHEVIEKLQHELSLMGPVVHEVSDSQAGSLQSELLCSQAGGprgqALQgELEAALEAKEA-LSRL-----LADQERRHS 1814
Cdd:pfam15921 462 KVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTA----SLQ-EKERAIEATNAeITKLrsrvdLKLQELQHL 536
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1815 QALEALQQRLQGAEEAAELQLAELERNVALREAEVEDM----------ASRIQEFEAALkakEATIAERNLEIDA---LN 1881
Cdd:pfam15921 537 KNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMtqlvgqhgrtAGAMQVEKAQL---EKEINDRRLELQEfkiLK 613
|
410
....*....|..
gi 81295809 1882 QRKAAHSAELEA 1893
Cdd:pfam15921 614 DKKDAKIRELEA 625
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
253-911 |
6.87e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 52.04 E-value: 6.87e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 253 SLSNMHTAQLELTQANLQKEKETALTELREMLNSRRAQeLALLQSRQQHELELLREQHAREKEEVVLRCGQEAAELKEKL 332
Cdd:pfam15921 209 SMSTMHFRSLGSAISKILRELDTEISYLKGRIFPVEDQ-LEALKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKA 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 333 QSEMEKNAQIvktlkedwESEKDLCLENLRKE--LSAKHQSEMEDLQNQFQKELAEQRaeleKIFQDKNQAERALRNLES 410
Cdd:pfam15921 288 SSARSQANSI--------QSQLEIIQEQARNQnsMYMRQLSDLESTVSQLRSELREAK----RMYEDKIEELEKQLVLAN 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 411 HHQAAIEKLREDLQSEHGRCLEDLEFKFKESEK-EKQLELEnlqasyedlkaqsQEEIRRLWsqlDSARTSRQELSELHE 489
Cdd:pfam15921 356 SELTEARTERDQFSQESGNLDDQLQKLLADLHKrEKELSLE-------------KEQNKRLW---DRDTGNSITIDHLRR 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 490 QLLARTSRVEDLEQLKQREKTQHESELEQLRIYFEKKLRDAEKtyqedLTLLQQRLQGAREdaLLDSVevglscvgLEEK 569
Cdd:pfam15921 420 ELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEK-----VSSLTAQLESTKE--MLRKV--------VEEL 484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 570 PEKgrkdhvdELEPERHKESLPRFQAELEESHRhQLEALESplciqheghvsdrccvETSALGHEWRLEPSEGHSQELPW 649
Cdd:pfam15921 485 TAK-------KMTLESSERTVSDLTASLQEKER-AIEATNA----------------EITKLRSRVDLKLQELQHLKNEG 540
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 650 VHLQGVQdgdleadTERAARVLGLETEHKVqLSLLQTELKEEIELLKIENRNLYGKLQHETRLKDDLEKVKHNLiedhqK 729
Cdd:pfam15921 541 DHLRNVQ-------TECEALKLQMAEKDKV-IEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLEL-----Q 607
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 730 ELNNAKQKTELMKQEFQRKETDWKVMKEELQREAEEKLTLM---------LLELREKAESEKQTIINKFELREAEMRQLQ 800
Cdd:pfam15921 608 EFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVkdikqerdqLLNEVKTSRNELNSLSEDYEVLKRNFRNKS 687
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 801 DQQAAQILDLERSLTEQQGRLQQLEQDLTSDD-----ALHCSQCGREPPTAQDGELAALHVKEDCALQLMLARSRFLEER 875
Cdd:pfam15921 688 EEMETTTNKLKMQLKSAQSELEQTRNTLKSMEgsdghAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFL 767
|
650 660 670
....*....|....*....|....*....|....*...
gi 81295809 876 KEITEKFSAEQDAFLQEaQEQHARELQLL--QERHQQQ 911
Cdd:pfam15921 768 KEEKNKLSQELSTVATE-KNKMAGELEVLrsQERRLKE 804
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
216-519 |
7.07e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 52.37 E-value: 7.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 216 EQECELAITDLESGREDEAGLHQSQAVHGLELEALRLSLSNMHTAQLELTQANLQKEKETALTELREMLNSRRAQELALL 295
Cdd:TIGR02168 711 EEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQ 790
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 296 QSRQQHELELLREQHaREKEEVVLRCGQEAAELKEKLQSEMEKNAQIVKTLKEdwesekdlcLENLRKELSAkHQSEMED 375
Cdd:TIGR02168 791 IEQLKEELKALREAL-DELRAELTLLNEEAANLRERLESLERRIAATERRLED---------LEEQIEELSE-DIESLAA 859
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 376 LQNQFQKELAEQRAELEKIFQDKNQAERALRNLESHHQAAIEKLREdlqsehgrcLEDLEFKFKESEKEKQLELENLQAS 455
Cdd:TIGR02168 860 EIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRE---------LESKRSELRRELEELREKLAQLELR 930
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 81295809 456 YEDLKAQSQEEIRRLWSqldsartsrqELSELHEQLLARTSRVEDLEQLKQREKTQHESELEQL 519
Cdd:TIGR02168 931 LEGLEVRIDNLQERLSE----------EYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
863-1186 |
7.85e-06 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 52.26 E-value: 7.85e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 863 QLMLARSRFLEERKEITEKFSAEQDAflqEAQEQHARE-LQLLQERHQQQllsvtaELEARHQAALGELTASLESKQGAL 941
Cdd:COG3096 300 QLAEEQYRLVEMARELEELSARESDL---EQDYQAASDhLNLVQTALRQQ------EKIERYQEDLEELTERLEEQEEVV 370
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 942 LAArvAELQTKHAADLGALETRHlsslDSLESCY------LSEFQTIREEHRQALELLR----------------ADFEE 999
Cdd:COG3096 371 EEA--AEQLAEAEARLEAAEEEV----DSLKSQLadyqqaLDVQQTRAIQYQQAVQALEkaralcglpdltpenaEDYLA 444
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1000 QLW-KKDSLHQTILTQElEKL------KRKHEGELQSVRdHLRTEVSTELAGTVAHEL-----QGVHQGEFGSEKKTALH 1067
Cdd:COG3096 445 AFRaKEQQATEEVLELE-QKLsvadaaRRQFEKAYELVC-KIAGEVERSQAWQTARELlrryrSQQALAQRLQQLRAQLA 522
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1068 EKEETLRLQSA---QAQPFHQEEKESLSLQLQKKNHQVQQ------LKDQVLSLSHEIEECRSELEVLQQR------RER 1132
Cdd:COG3096 523 ELEQRLRQQQNaerLLEEFCQRIGQQLDAAEELEELLAELeaqleeLEEQAAEAVEQRSELRQQLEQLRARikelaaRAP 602
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 81295809 1133 ENREGANLLSMLKADVNLSHSERGALQDALRRLLglfgETLRAAVTLRSRIGER 1186
Cdd:COG3096 603 AWLAAQDALERLREQSGEALADSQEVTAAMQQLL----EREREATVERDELAAR 652
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
2488-2772 |
1.04e-05 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 51.45 E-value: 1.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2488 LERLEKIireqgDLQEKSLEHLRlpdrssllSEIQALRAQLRmthlQNQEKLQHLRTALTSAEARGSQQEHQlrRQVELL 2567
Cdd:PRK11281 69 LALLDKI-----DRQKEETEQLK--------QQLAQAPAKLR----QAQAELEALKDDNDEETRETLSTLSL--RQLESR 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2568 AYKVEQEKciaGDLQKTLSEeqekANS-----------VQKLLAAEQTVVRDLKSDLCESRQKSEQLS---RSLCEVQQE 2633
Cdd:PRK11281 130 LAQTLDQL---QNAQNDLAE----YNSqlvslqtqperAQAALYANSQRLQQIRNLLKGGKVGGKALRpsqRVLLQAEQA 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2634 VLQLRSMLSSKENELKAALQELESEQGKGRALQSQLEEEQLRHLQ------RESQSAKALEELRASLETQRAQSSRLcva 2707
Cdd:PRK11281 203 LLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQeainskRLTLSEKTVQEAQSQDEAARIQANPL--- 279
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 81295809 2708 lkheqtakdnLQKELRIEHSRCEALLAQERsQLSEL-QKDLAAeKSRtleLSEALRHERLLTEQLS 2772
Cdd:PRK11281 280 ----------VAQELEINLQLSQRLLKATE-KLNTLtQQNLRV-KNW---LDRLTQSERNIKEQIS 330
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
2668-2939 |
1.08e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 51.28 E-value: 1.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2668 QLEEEQLRHLQRESQSAKALEELRASLETQR---AQSSRLCVALKHEQTAKDNLQKELRIEHSRCE--ALLAQERSQLSE 2742
Cdd:pfam17380 303 QEKEEKAREVERRRKLEEAEKARQAEMDRQAaiyAEQERMAMERERELERIRQEERKRELERIRQEeiAMEISRMRELER 382
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2743 LQKDLAAEKSRTLELSEALRHERLLTEQLSQRTQEACVH------QDTQAHHALLQKLKEEKSRvvdlqaMLEKVQQQal 2816
Cdd:pfam17380 383 LQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEmeqiraEQEEARQREVRRLEEERAR------EMERVRLE-- 454
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2817 hsqqqlEAEAQKHCEALRREKEVSATLKSTVEalhtqkRELRCSLEREREKPAWLQAELEQSHPRLKEQE-GRKAARRSA 2895
Cdd:pfam17380 455 ------EQERQQQVERLRQQEEERKRKKLELE------KEKRDRKRAEEQRRKILEKELEERKQAMIEEErKRKLLEKEM 522
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 81295809 2896 EARQSPAAAEQWRkwqrdkeKLRELELQRQRDLHKIKQLQQTVR 2939
Cdd:pfam17380 523 EERQKAIYEEERR-------REAEEERRKQQEMEERRRIQEQMR 559
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
213-543 |
1.14e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.60 E-value: 1.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 213 KECEQECELAITDLESGREDEAGLHQsqavhglELEALRLSLSNMHTAQLELTQANLQKEKETALTELREMLNSRRAQEL 292
Cdd:TIGR02168 680 EELEEKIEELEEKIAELEKALAELRK-------ELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQL 752
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 293 ALLQSRQQHELELLREQHAREKEEVvlrcgQEAAELKEKLQSEMEKNAQIVKTLKEDwesekdlcLENLRKELsakhqse 372
Cdd:TIGR02168 753 SKELTELEAEIEELEERLEEAEEEL-----AEAEAEIEELEAQIEQLKEELKALREA--------LDELRAEL------- 812
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 373 medlqNQFQKELAEQRAELEKIFQDKNQAERALRNLEshhqAAIEKLREDLQSehgrcLEDLEFKFKESEKEKQLELENL 452
Cdd:TIGR02168 813 -----TLLNEEAANLRERLESLERRIAATERRLEDLE----EQIEELSEDIES-----LAAEIEELEELIEELESELEAL 878
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 453 QasyeDLKAQSQEEIRRLWSQLDSA----RTSRQELSELHEQLLARTSRVEDLEQLKQREKTQHESELEQLRIYFEKKLR 528
Cdd:TIGR02168 879 L----NERASLEEALALLRSELEELseelRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLE 954
|
330
....*....|....*
gi 81295809 529 DAEKTYQEDLTLLQQ 543
Cdd:TIGR02168 955 EAEALENKIEDDEEE 969
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
2559-3154 |
1.18e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 51.68 E-value: 1.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2559 QLRRQVELLAYkvEQEKCIAGDLQKTLSEEQEKANSVQKLLAAEQTVVRDLKSDLCESRQKSEQLSRSlcEVQQEVLQLR 2638
Cdd:PTZ00121 1083 AKEDNRADEAT--EEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKA--EDAKRVEIAR 1158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2639 SMLSSKENELKAALQELESEQGKGRALQSQLEEEqLRHLQ--RESQSAKALEELRASLETQRAQSSRLCVALKHEQTAKD 2716
Cdd:PTZ00121 1159 KAEDARKAEEARKAEDAKKAEAARKAEEVRKAEE-LRKAEdaRKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKK 1237
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2717 NLQKELRIEHSRCEallaQERSQLSELQKDLAAEKSRTLELSEALRHERLLTEQLSQRTQEACVHQDTQAHHALLQKlKE 2796
Cdd:PTZ00121 1238 DAEEAKKAEEERNN----EEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKK-AE 1312
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2797 EKSRVVDLQAMLEKVQQQALHSQQQLEaEAQKHCEALRREKEVSatlKSTVEALHTQKRELRCSLEREREKPAWLQAELE 2876
Cdd:PTZ00121 1313 EAKKADEAKKKAEEAKKKADAAKKKAE-EAKKAAEAAKAEAEAA---ADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAE 1388
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2877 Q-----------SHPRLKEQEGRKAARRSAEARQSPAAAEQWRKWQRDKEKLREL-----------ELQRQRDLHKIKQL 2934
Cdd:PTZ00121 1389 EkkkadeakkkaEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAkkadeakkkaeEAKKAEEAKKKAEE 1468
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2935 QQTVRDLESKDEVPGSRLHLGSARRAAGSDADHLREQQRE-LEAMRQRLLSAARLLTSFTSQAVDRTVNDWTSSNEKAVM 3013
Cdd:PTZ00121 1469 AKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAkKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKA 1548
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 3014 SLLHTLEELKSDLSRPTSSQKKMAAElqfqfvdvllKDNVSLTKALSTvtqEKLELSRAVSKLEKLLKHHLQKGCSPSRS 3093
Cdd:PTZ00121 1549 DELKKAEELKKAEEKKKAEEAKKAEE----------DKNMALRKAEEA---KKAEEARIEEVMKLYEEEKKMKAEEAKKA 1615
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 81295809 3094 ERSAWKPDETAPQSSLRRPDPGRLPPAASEEAHTSNVKMEKLYLHYLRAESFRKALIYQKK 3154
Cdd:PTZ00121 1616 EEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKK 1676
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
2488-2857 |
1.50e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.22 E-value: 1.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2488 LERLEKIIREQGD----LQ---EKSLEHLRLPDR------SSLLSEIQALRAQLRMTHLQNQEKLQHL--RTALTSAEAR 2552
Cdd:TIGR02169 186 IERLDLIIDEKRQqlerLRrerEKAERYQALLKEkreyegYELLKEKEALERQKEAIERQLASLEEELekLTEEISELEK 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2553 GSQQEHQLRRQVELLAYKVEQEKCIAgdLQKTLSE---EQEKANSVQKLLAAE----QTVVRDLKSDLCESRQKSEQLSR 2625
Cdd:TIGR02169 266 RLEEIEQLLEELNKKIKDLGEEEQLR--VKEKIGEleaEIASLERSIAEKEREledaEERLAKLEAEIDKLLAEIEELER 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2626 SLCEVQQEVLQLRSMLSSKENELKAALQELESEQGKGRALQSQLEEEQlrhlqresqsaKALEELRASLEtqraqssrlc 2705
Cdd:TIGR02169 344 EIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYR-----------EKLEKLKREIN---------- 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2706 valkheqtakdnlqkELRIEHSRCEALLAQERSQLSELQKDLAAEKSRTLELSEALRHERLLTEQLSQRTQEAcvhqdtq 2785
Cdd:TIGR02169 403 ---------------ELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQL------- 460
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 81295809 2786 ahHALLQKLKEEKSRVVDLQAMLEKVQQQALHSQQQLEAEAQKHCEALRREKEVSATLKSTVEALHTQKREL 2857
Cdd:TIGR02169 461 --AADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQL 530
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
330-470 |
1.55e-05 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 50.55 E-value: 1.55e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 330 EKLQSEMEKNA-QIVKtlkedwESEKDLclENLRKELSAKHQSEMEDLQNQFQKELAEQRAELEKIFQDKNQAERALRNl 408
Cdd:PRK12704 30 EAKIKEAEEEAkRILE------EAKKEA--EAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDR- 100
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 81295809 409 eshHQAAIEKLREDLQSEhgrcledlefkfKESEKEKQLELENLQASYEDLKAQSQEEIRRL 470
Cdd:PRK12704 101 ---KLELLEKREEELEKK------------EKELEQKQQELEKKEEELEELIEEQLQELERI 147
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
335-610 |
1.97e-05 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 50.34 E-value: 1.97e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 335 EMEKNAQIVKTLKEDWESEKDLCLENLRKELSAKHQSEMEDLQNQFQKELAEQRAELEKIFQDKNQAERALRNLEshhqa 414
Cdd:COG5185 221 LLEKAKEIINIEEALKGFQDPESELEDLAQTSDKLEKLVEQNTDLRLEKLGENAESSKRLNENANNLIKQFENTK----- 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 415 aiEKLREDLQSehgrcledLEFKFKESEKEKQLELENLQASYEDLKAQSQEEIRRLWSQLDSARTSrqeLSELHEQLLAR 494
Cdd:COG5185 296 --EKIAEYTKS--------IDIKKATESLEEQLAAAEAEQELEESKRETETGIQNLTAEIEQGQES---LTENLEAIKEE 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 495 TSRVEDLEQLKQREKT--QHESELEQLRIYFEKKLRDAEKTYQEDLTLLQ----------QRLQGAREDALLDSVEVGLS 562
Cdd:COG5185 363 IENIVGEVELSKSSEEldSFKDTIESTKESLDEIPQNQRGYAQEILATLEdtlkaadrqiEELQRQIEQATSSNEEVSKL 442
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 81295809 563 CVGLEEKPEKGRKDHVDELEP---ERHKESLPRFQAELEESHRhQLEALES 610
Cdd:COG5185 443 LNELISELNKVMREADEESQSrleEAYDEINRSVRSKKEDLNE-ELTQIES 492
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1457-1860 |
2.07e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.84 E-value: 2.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1457 AEAVTALEQQVASLDKHLRNQRQFMDEqaaerehereeFQQEIQRLEGQLRQAAKpqpwgprdsQQAPLDGEVELLQQKL 1536
Cdd:TIGR02169 680 RERLEGLKRELSSLQSELRRIENRLDE-----------LSQELSDASRKIGEIEK---------EIEQLEQEEEKLKERL 739
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1537 REKLDEFNELAIQKESADRQVLMQEEEIKRLEEMNINIRKKVAQLQEEV--EKQKNIVKGLEQDKEVLKKQQMSSLLLAS 1614
Cdd:TIGR02169 740 EELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLshSRIPEIQAELSKLEEEVSRIEARLREIEQ 819
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1615 TLQStldagrcpePPSGSPPEGPEIQLEVTQRALLrrESEVLDLKEQLEKMKGDLESKNEEIlhlnlkldmqnSQTAVSL 1694
Cdd:TIGR02169 820 KLNR---------LTLEKEYLEKEIQELQEQRIDL--KEQIKSIEKEIENLNGKKEELEEEL-----------EELEAAL 877
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1695 RELEEENTSLKviytrsSEIEELKATIENLQENQKRLQKE---KAEEIEQLHEVIEKLQHELSLMGPVVHEVSDSQAGSL 1771
Cdd:TIGR02169 878 RDLESRLGDLK------KERDELEAQLRELERKIEELEAQiekKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEEL 951
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1772 QSELLcsqaggprgQALQGELEAALEAKEALSrLLADQERrhsqalealqqrlqgaeEAAELQLAELERNVALREAEVED 1851
Cdd:TIGR02169 952 SLEDV---------QAELQRVEEEIRALEPVN-MLAIQEY-----------------EEVLKRLDELKEKRAKLEEERKA 1004
|
....*....
gi 81295809 1852 MASRIQEFE 1860
Cdd:TIGR02169 1005 ILERIEEYE 1013
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1520-1754 |
2.31e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 50.40 E-value: 2.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1520 SQQAPLDGEVELLQQKLREKLDEFNElaiqkesadrqvlmQEEEIKRLEEMNINIRKKVAQLQEEVEKQKNIVKGLEQDK 1599
Cdd:TIGR04523 225 KQNNQLKDNIEKKQQEINEKTTEISN--------------TQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQL 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1600 -------EVLKKQQMSSLLlaSTLQSTLDagrcpeppsgsppeGPEIQLEVTQRALLRRESEVLDLKEQLEKMKGDLESK 1672
Cdd:TIGR04523 291 nqlkseiSDLNNQKEQDWN--KELKSELK--------------NQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNS 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1673 NEEilhlNLKLDMQNSQTAVSLRELEEENTS-LKVIYTRSSEIEELKATIEN-------LQENQKRLQKEK---AEEIEQ 1741
Cdd:TIGR04523 355 ESE----NSEKQRELEEKQNEIEKLKKENQSyKQEIKNLESQINDLESKIQNqeklnqqKDEQIKKLQQEKellEKEIER 430
|
250
....*....|...
gi 81295809 1742 LHEVIEKLQHELS 1754
Cdd:TIGR04523 431 LKETIIKNNSEIK 443
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1300-1883 |
2.33e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 50.45 E-value: 2.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1300 EETAQVVRkhqELLECLKEESAAK--AELALELHKTQGTLEGFKVETADLKEVLAGKEDSEHRLVLELESLRRQLQQAAQ 1377
Cdd:PRK03918 145 ESREKVVR---QILGLDDYENAYKnlGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELRE 221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1378 EQAALREECTRLWSRGEATaTDAEAREAALRKEVEDLTKEQSETRKQAEKDR---SALLSQMKILEsELEEQLSQHRGCA 1454
Cdd:PRK03918 222 ELEKLEKEVKELEELKEEI-EELEKELESLEGSKRKLEEKIRELEERIEELKkeiEELEEKVKELK-ELKEKAEEYIKLS 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1455 KQAEAVTALEQQVASLDKHLRNQRQFMDEQAAEREHEREEFQQEIQRLEGQLRQAAKPQPWgprdsqqapldgevELLQQ 1534
Cdd:PRK03918 300 EFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEER--------------HELYE 365
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1535 KLREKLDEFNELaiQKESADRQVLMQEEEIKRLEEMNINIRKKVAQLQEEVEKQKNIVKGLEQDKEVLKKQQmsslllas 1614
Cdd:PRK03918 366 EAKAKKEELERL--KKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAK-------- 435
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1615 tlqstldaGRCpeppsgsppegpeiqlevtqrALLRRESEVLDLKEQLEKMKGDLESKNEEILHLNLKldmqnsqtavsL 1694
Cdd:PRK03918 436 --------GKC---------------------PVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEK-----------E 475
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1695 RELEEENTSLKVIYTRSSEIEELKATIENLQENQKRLQKEKAEEIEQLHEVIEKLQHELSLMGpvvhevsdSQAGSLQSE 1774
Cdd:PRK03918 476 RKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLK--------GEIKSLKKE 547
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1775 LlcsqaggPRGQALQGELEAAL----EAKEALSRLLADQERRHSQALEALQQRLQGAEEAAE--LQLAELERNVALREAE 1848
Cdd:PRK03918 548 L-------EKLEELKKKLAELEkkldELEEELAELLKELEELGFESVEELEERLKELEPFYNeyLELKDAEKELEREEKE 620
|
570 580 590
....*....|....*....|....*....|....*
gi 81295809 1849 VEDMASRIQEFEAALKAKEATIAERNLEIDALNQR 1883
Cdd:PRK03918 621 LKKLEEELDKAFEELAETEKRLEELRKELEELEKK 655
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
245-939 |
2.44e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 50.35 E-value: 2.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 245 LELEALRLSLSNMHTAQLELTQANLQKEKETALTELREMLnsrraQELALLQSRQQHELELLREQHAREKEevvlrCGQE 324
Cdd:TIGR00618 196 AELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREAL-----QQTQQSHAYLTQKREAQEEQLKKQQL-----LKQL 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 325 AAELKEklqsemeknAQIVKTLKEDWESEKDLCLENLRKELSAKHQSEMEDLQNQFQKELAEQRAELEKIFQDKNQAERA 404
Cdd:TIGR00618 266 RARIEE---------LRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQ 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 405 LRNLESHHQAAIEKLRedlQSEHGRCLEDLEFKFKEsEKEKQLELEnlqasyEDLKAQsQEEIRRLWSQLDSARTSRQEL 484
Cdd:TIGR00618 337 QSSIEEQRRLLQTLHS---QEIHIRDAHEVATSIRE-ISCQQHTLT------QHIHTL-QQQKTTLTQKLQSLCKELDIL 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 485 SELHEQLLARTSRVEDLEQLKQREKTQHESELEqlriYFEKKLRDAEKTYQEdLTLLQQRLQGAREDalLDSVEVGLSCV 564
Cdd:TIGR00618 406 QREQATIDTRTSAFRDLQGQLAHAKKQQELQQR----YAELCAAAITCTAQC-EKLEKIHLQESAQS--LKEREQQLQTK 478
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 565 GLEEKPEKgRKDHVDELEPERHKESLPRFQAELEESHRHQLEALESPlciqheghvSDRCCVETSALGHEWrlepsegHS 644
Cdd:TIGR00618 479 EQIHLQET-RKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPG---------PLTRRMQRGEQTYAQ-------LE 541
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 645 QELPWVhlqgvqDGDLEADTERAARVLGLETEHKVQLSLL---QTELKEEIELLkienRNLYGKLQHETRLKDDLEKVKH 721
Cdd:TIGR00618 542 TSEEDV------YHQLTSERKQRASLKEQMQEIQQSFSILtqcDNRSKEDIPNL----QNITVRLQDLTEKLSEAEDMLA 611
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 722 NLIEDHQKELNNAKQKTELMKQEFQRKETdwkvMKEELQREAEEKLTLMLLELREKAESEKQTIINKFELREAEMRQLQD 801
Cdd:TIGR00618 612 CEQHALLRKLQPEQDLQDVRLHLQQCSQE----LALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQS 687
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 802 QQAAQILDLErSLTEQQGRLQQLEQDLTSDDALHCSQCgrEPPTAQDGELAALHVKEDCALQ-LMLARSRFLEERKEITE 880
Cdd:TIGR00618 688 EKEQLTYWKE-MLAQCQTLLRELETHIEEYDREFNEIE--NASSSLGSDLAAREDALNQSLKeLMHQARTVLKARTEAHF 764
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 81295809 881 KFSAEQDAFLQ-EAQEQHARELQLLQERHQQQLLSVTAELEARHQAAL----GELTASLESKQG 939
Cdd:TIGR00618 765 NNNEEVTAALQtGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIpsdeDILNLQCETLVQ 828
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1786-1960 |
2.71e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 50.30 E-value: 2.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1786 QALQGELEAALEAKEALSRLLADQErrhsQALEALQQRLQGAEEAAELQLAELERNVALRE-AEVEDMASRIQEFEAALK 1864
Cdd:COG4913 613 AALEAELAELEEELAEAEERLEALE----AELDALQERREALQRLAEYSWDEIDVASAEREiAELEAELERLDASSDDLA 688
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1865 AKEATIAERNLEIDALNQRKAAHSAELEAVLLALARIRRALEQ-QPLAAGAAPPELQWLRAQC-ARLSRQLQVLHQRFLR 1942
Cdd:COG4913 689 ALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDElQDRLEAAEDLARLELRALLeERFAAALGDAVERELR 768
|
170
....*....|....*...
gi 81295809 1943 CQVELDRRQARRATAHTR 1960
Cdd:COG4913 769 ENLEERIDALRARLNRAE 786
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
2475-2941 |
2.84e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 50.34 E-value: 2.84e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2475 RLSGSDLGGHSSLLERLEKIIREQGDLQEKSLEHLRLPDRSSLL-SEIQALRAQLR--MTHLQNQEKLQHLRTALTSAEA 2551
Cdd:COG3096 282 ELSERALELRRELFGARRQLAEEQYRLVEMARELEELSARESDLeQDYQAASDHLNlvQTALRQQEKIERYQEDLEELTE 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2552 RgsqqehqLRRQVELLAykveqekciAGDLQKTLSEEQekansvqkLLAAEQTVVRdLKSDLCESRQkseqlsrSLCEVQ 2631
Cdd:COG3096 362 R-------LEEQEEVVE---------EAAEQLAEAEAR--------LEAAEEEVDS-LKSQLADYQQ-------ALDVQQ 409
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2632 QEVLQLRSMLSSKEN-ELKAALQELESEQGKGRALQSQLEEEQLRHLQRE------------SQSAKALEELRA-SLETQ 2697
Cdd:COG3096 410 TRAIQYQQAVQALEKaRALCGLPDLTPENAEDYLAAFRAKEQQATEEVLEleqklsvadaarRQFEKAYELVCKiAGEVE 489
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2698 RAQSSrlcvalkheQTAKdnlqkELRIEHSRCEALLAQE---RSQLSELQKDLAAEKsrtlelsealRHERLLtEQLSQR 2774
Cdd:COG3096 490 RSQAW---------QTAR-----ELLRRYRSQQALAQRLqqlRAQLAELEQRLRQQQ----------NAERLL-EEFCQR 544
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2775 TqeacvhqdtqahhallqklkeekSRVVDLQAMLEkvqqqalHSQQQLEAEAQKHCEALRREKEVSATLKSTVEALHTQK 2854
Cdd:COG3096 545 I-----------------------GQQLDAAEELE-------ELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARI 594
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2855 RELRcslereREKPAWLQAelEQSHPRLKEQegrkaarrSAEARQSPAAAEQWRkwQRDKEKLRELELQRQRDLHKIKQL 2934
Cdd:COG3096 595 KELA------ARAPAWLAA--QDALERLREQ--------SGEALADSQEVTAAM--QQLLEREREATVERDELAARKQAL 656
|
....*..
gi 81295809 2935 QQTVRDL 2941
Cdd:COG3096 657 ESQIERL 663
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
2513-2941 |
2.94e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 50.34 E-value: 2.94e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2513 DRSSLLSEIQALRAQL---RMTHLQNQEKLQHLRTAL-TSAEARGS-QQEHQ-----LRRQVELLAYKVEQEKCIAgDLQ 2582
Cdd:PRK04863 280 ERRVHLEEALELRRELytsRRQLAAEQYRLVEMARELaELNEAESDlEQDYQaasdhLNLVQTALRQQEKIERYQA-DLE 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2583 KtLSEEQEKANSVQKLlAAEQtvvrdlksdLCESRQKSEQlsrslceVQQEVLQLRSMLSskenELKAALQELESeqgkg 2662
Cdd:PRK04863 359 E-LEERLEEQNEVVEE-ADEQ---------QEENEARAEA-------AEEEVDELKSQLA----DYQQALDVQQT----- 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2663 RALQSQLEEEQLRHLQRESQSAK-ALEELRASLETQRAQSSRLCVALKHeqtakdnLQKELRIE---HSRCEALLAQERS 2738
Cdd:PRK04863 412 RAIQYQQAVQALERAKQLCGLPDlTADNAEDWLEEFQAKEQEATEELLS-------LEQKLSVAqaaHSQFEQAYQLVRK 484
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2739 QLSELQKDLAAEKSRtlELSEALRHERLLTEQLSQRtqeacvhqdtQAHHALLQKLKEEKSRVVDLQAMLEKVQQQALHS 2818
Cdd:PRK04863 485 IAGEVSRSEAWDVAR--ELLRRLREQRHLAEQLQQL----------RMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDD 552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2819 QQQLEAEAQKHCEALRREKEVSATLKSTVEALHTQKRELRCSLER-EREKPAWLQAelEQSHPRLKEQegrkaarrSAEA 2897
Cdd:PRK04863 553 EDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRlAARAPAWLAA--QDALARLREQ--------SGEE 622
|
410 420 430 440
....*....|....*....|....*....|....*....|....
gi 81295809 2898 RQSPAAAEQWRkwQRDKEKLRELELQRQRDLHKIKQLQQTVRDL 2941
Cdd:PRK04863 623 FEDSQDVTEYM--QQLLERERELTVERDELAARKQALDEEIERL 664
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
2511-2777 |
3.00e-05 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 50.05 E-value: 3.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2511 LPDRSSLLSEIQALRAQlrmTHLQNQEKLQHLRTALTS-AEARGSQQEHQLRRQVellaykVEQEKCIAGDLQKTLSEEQ 2589
Cdd:PRK10929 22 APDEKQITQELEQAKAA---KTPAQAEIVEALQSALNWlEERKGSLERAKQYQQV------IDNFPKLSAELRQQLNNER 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2590 EKANSVQKLLAA---EQTVVRDLKSDLCESRQ------KSEQLSRSLCEVQQEVLQLRSMLSSKENELKAalqeleseQG 2660
Cdd:PRK10929 93 DEPRSVPPNMSTdalEQEILQVSSQLLEKSRQaqqeqdRAREISDSLSQLPQQQTEARRQLNEIERRLQT--------LG 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2661 KGralQSQLEEEQLRHLQRESQSAKA------LEELRASletQRAQSSRLCVALkheqtakdnLQKelriEHSRCEALLA 2734
Cdd:PRK10929 165 TP---NTPLAQAQLTALQAESAALKAlvdeleLAQLSAN---NRQELARLRSEL---------AKK----RSQQLDAYLQ 225
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 81295809 2735 QERSQLSELQK---DLAAEKSRTLE---------LSEALRHERLLTEQLSQRTQE 2777
Cdd:PRK10929 226 ALRNQLNSQRQreaERALESTELLAeqsgdlpksIVAQFKINRELSQALNQQAQR 280
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
2587-2988 |
3.06e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.77 E-value: 3.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2587 EEQEKANSVQKLLAAEQTVVRDLKSDLCESRQKSEQLSRSLCEVQQEVLQLRSMLSSKE--NELKAALQELESEQGKGRA 2664
Cdd:COG4717 71 KELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPlyQELEALEAELAELPERLEE 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2665 LQSQLEEeqLRHLQRESQSAKA-LEELRASLETQRAQSSrlcvalkheqTAKDNLQKELRIEHSRCEALLAQERSQLSEL 2743
Cdd:COG4717 151 LEERLEE--LRELEEELEELEAeLAELQEELEELLEQLS----------LATEEELQDLAEELEELQQRLAELEEELEEA 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2744 QKDLAAEKSRTLELSEALRHERLLtEQLSQRTQEACVhqdTQAHHALLQKLKEEKSRVVDLQAMLEKVQQQALHSQQQLE 2823
Cdd:COG4717 219 QEELEELEEELEQLENELEAAALE-ERLKEARLLLLI---AAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLA 294
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2824 AEAQKHCEALRREKEVSATLKSTVEALHTQKRELRCSLEREREKPAWLQAELEQSHPRLKEQEGRKAARRSAEARQS--- 2900
Cdd:COG4717 295 REKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEiaa 374
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2901 -------------PAAAEQWRKWQRDKEKLRELELQrqrdLHKIKQLQQTVRDLESKDEVPGSRLHLGSARRAAGSDADH 2967
Cdd:COG4717 375 llaeagvedeeelRAALEQAEEYQELKEELEELEEQ----LEELLGELEELLEALDEEELEEELEELEEELEELEEELEE 450
|
410 420
....*....|....*....|.
gi 81295809 2968 LREQQRELEAMRQRLLSAARL 2988
Cdd:COG4717 451 LREELAELEAELEQLEEDGEL 471
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
271-612 |
3.15e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.14 E-value: 3.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 271 KEKETALTELREMLNSRRAQELA--LLQSRQQHELELLREQHAREKEEVvlrcgQEAAELKEKlqSEMEKNAQIVKTLKE 348
Cdd:PTZ00121 1454 EEAKKAEEAKKKAEEAKKADEAKkkAEEAKKADEAKKKAEEAKKKADEA-----KKAAEAKKK--ADEAKKAEEAKKADE 1526
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 349 DWESEKDLCLENLRKELSAKHQSEM---EDLQNQFQKELAEQRAELEkifQDKNQAERALRNLESHHQAAIEKLREDLQS 425
Cdd:PTZ00121 1527 AKKAEEAKKADEAKKAEEKKKADELkkaEELKKAEEKKKAEEAKKAE---EDKNMALRKAEEAKKAEEARIEEVMKLYEE 1603
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 426 EHGRCLEDLEFKFKESEKEKQL-ELENLQASYEDLKAQSQEEIR-----RLWSQLDSARTSRQELSELHEQLLARTSRVE 499
Cdd:PTZ00121 1604 EKKMKAEEAKKAEEAKIKAEELkKAEEEKKKVEQLKKKEAEEKKkaeelKKAEEENKIKAAEEAKKAEEDKKKAEEAKKA 1683
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 500 DLEQLKQREKTQHESE----LEQLRIYFEKKLRDAEKTYQEDLTLLQQRLQGAREDalldsvevglscvglEEKPEKGRK 575
Cdd:PTZ00121 1684 EEDEKKAAEALKKEAEeakkAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEA---------------EEDKKKAEE 1748
|
330 340 350
....*....|....*....|....*....|....*..
gi 81295809 576 DHVDELEPERHKESLPRFQAELEESHRHQLEALESPL 612
Cdd:PTZ00121 1749 AKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEEL 1785
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1652-1906 |
3.71e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.68 E-value: 3.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1652 ESEVLDLKEQLEKMKGDLESKNEEILHLNLKLDMQNSQTAVSLRELEEENTSLKVIytrSSEIEELKATIENLQENQKRL 1731
Cdd:TIGR02169 673 PAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQL---EQEEEKLKERLEELEEDLSSL 749
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1732 QKEKAEEIEQLHEVIEKLqhelslmgpvvhevsdsqagslqsellcsqaggPRGQALQGELEAALEAKEA-LSRLLADQE 1810
Cdd:TIGR02169 750 EQEIENVKSELKELEARI---------------------------------EELEEDLHKLEEALNDLEArLSHSRIPEI 796
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1811 RRHSQALEALQQRLqgaeeaaELQLAELERNVALREAEVEDMASRIQEFEAALKAKEATIAERNLEIDALNQRKAAHSAE 1890
Cdd:TIGR02169 797 QAELSKLEEEVSRI-------EARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEE 869
|
250
....*....|....*.
gi 81295809 1891 LEAVLLALARIRRALE 1906
Cdd:TIGR02169 870 LEELEAALRDLESRLG 885
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1765-1950 |
3.73e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.91 E-value: 3.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1765 DSQAGSLQSELlcsQAGGPRGQALQGELEAALEAKEALSRLLADQERR-----HSQALEALQQRLQGAEeAAELQLAELE 1839
Cdd:COG4913 616 EAELAELEEEL---AEAEERLEALEAELDALQERREALQRLAEYSWDEidvasAEREIAELEAELERLD-ASSDDLAALE 691
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1840 RNVALREAEVEDMASRIQEFEAALKAKEATIAERNLEIDALNQRKAAHSAELEAVLLALARIRRALEQQPLAAGAAppeL 1919
Cdd:COG4913 692 EQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVEREL---R 768
|
170 180 190
....*....|....*....|....*....|.
gi 81295809 1920 QWLRAQCARLSRQLQVLHQRFLRCQVELDRR 1950
Cdd:COG4913 769 ENLEERIDALRARLNRAEEELERAMRAFNRE 799
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
2618-2810 |
4.00e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.99 E-value: 4.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2618 QKSEQLSRSLCEVQQEVLQLRSMLSSKENELKAALQELESEQGKGRALQSQLE--EEQLRHLQRE-SQSAKALEELRASL 2694
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRalEQELAALEAElAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2695 ETQRAQSSRLCVAL-KHEQTAKDNL----------------QKELRIEHSRCEALLAQERSQLSELQKDLAAEKSRTLEL 2757
Cdd:COG4942 100 EAQKEELAELLRALyRLGRQPPLALllspedfldavrrlqyLKYLAPARREQAEELRADLAELAALRAELEAERAELEAL 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 81295809 2758 SEALRHER--LLTEQLSQRTQEACVHQDTQAHHALLQKLKEEKSRVVDLQAMLEK 2810
Cdd:COG4942 180 LAELEEERaaLEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEA 234
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
269-520 |
4.94e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.30 E-value: 4.94e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 269 LQKEKETALTELREMLNSRRAQELALLQS-RQQHELELLREQHAREKEEVVLRC----GQEAAELKEKLQSEMEKNAQIV 343
Cdd:TIGR02169 228 LLKEKEALERQKEAIERQLASLEEELEKLtEEISELEKRLEEIEQLLEELNKKIkdlgEEEQLRVKEKIGELEAEIASLE 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 344 KTLKEDWESEKDLclENLRKELSA---KHQSEMEDLQ----------NQFQKELAEQRAELEKIFQDKNQAERALRNLES 410
Cdd:TIGR02169 308 RSIAEKERELEDA--EERLAKLEAeidKLLAEIEELEreieeerkrrDKLTEEYAELKEELEDLRAELEEVDKEFAETRD 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 411 HHQAAIEKLrEDLQSEHGRcLEDLEFKFKESEKEKQLELENLQASYEDLKAQ----------SQEEIRRLWSQLDSARTS 480
Cdd:TIGR02169 386 ELKDYREKL-EKLKREINE-LKRELDRLQEELQRLSEELADLNAAIAGIEAKineleeekedKALEIKKQEWKLEQLAAD 463
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 81295809 481 RQELSELHEQLLARTSRVEDLEQLKQREKTQHESELEQLR 520
Cdd:TIGR02169 464 LSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASE 503
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
392-1136 |
5.21e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 49.37 E-value: 5.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 392 EKIFQDKNQAERALRNL--ESHHQAAIEKlREDLQSEHGRCLEDLEFKFKESEKEKQLElenlqaSYEDLKAQSQEEIRR 469
Cdd:PTZ00121 1034 EYGNNDDVLKEKDIIDEdiDGNHEGKAEA-KAHVGQDEGLKPSYKDFDFDAKEDNRADE------ATEEAFGKAEEAKKT 1106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 470 LWSQLDSARTSRQELSELHEQLLARTSR-VEDLEQLKQREKTQHESELEQLRiyfekKLRDAEKTYQEDLTLLQQRLQGA 548
Cdd:PTZ00121 1107 ETGKAEEARKAEEAKKKAEDARKAEEARkAEDARKAEEARKAEDAKRVEIAR-----KAEDARKAEEARKAEDAKKAEAA 1181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 549 REdalldSVEVglscvgleEKPEKGRK-DHVDELEPERHKESLPRFQAELEESHRHQLEALESPLCIQHEGhvsdrccvE 627
Cdd:PTZ00121 1182 RK-----AEEV--------RKAEELRKaEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDA--------E 1240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 628 TSALGHEWRLEPSEGHSQELPWVHLQGVQDGdLEADTERAARVLGLETEHKVQLSLLQTELKEEIELLKienrnlygKLQ 707
Cdd:PTZ00121 1241 EAKKAEEERNNEEIRKFEEARMAHFARRQAA-IKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAK--------KKA 1311
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 708 HETRLKDDLEKVKhnliEDHQKELNNAKQKTELMKQ--EFQRKETDWKVMKEELQREAEEKLTLMLLELREKAESEKQTI 785
Cdd:PTZ00121 1312 EEAKKADEAKKKA----EEAKKKADAAKKKAEEAKKaaEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKA 1387
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 786 INKFELREAEMRQLQDQQAAQILDLERSLTEQQGRLQQLEQDLTSDDALhcSQCGREPPTAQDGELAALHVKEDCALQLM 865
Cdd:PTZ00121 1388 EEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEA--KKKAEEAKKADEAKKKAEEAKKAEEAKKK 1465
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 866 LARSRFLEE-RKEITEKFSAEQDAFLQEAQEQHARELQLLQERHQQQLLSVTAElEARHQAalgELTASLESKQGAllAA 944
Cdd:PTZ00121 1466 AEEAKKADEaKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAE-EAKKAD---EAKKAEEAKKAD--EA 1539
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 945 RVAELQTKhaadlgALETRHLSSLDSLESCYLSEfQTIREEHRQALELLRADFEEQLWKKDSLHQTILTQELEKLKR--- 1021
Cdd:PTZ00121 1540 KKAEEKKK------ADELKKAEELKKAEEKKKAE-EAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAeea 1612
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1022 KHEGELQSVRDHLRTE-----VSTELAGTVAHELQGVHQ----GEFGSEKKTALHEKEETLRLQSAQAQPfHQEEKESLS 1092
Cdd:PTZ00121 1613 KKAEEAKIKAEELKKAeeekkKVEQLKKKEAEEKKKAEElkkaEEENKIKAAEEAKKAEEDKKKAEEAKK-AEEDEKKAA 1691
|
730 740 750 760
....*....|....*....|....*....|....*....|....*..
gi 81295809 1093 LQLQKKNHQ---VQQLKDQVLSLSHEIEECRSELEVLQQRRERENRE 1136
Cdd:PTZ00121 1692 EALKKEAEEakkAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKE 1738
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
2647-2982 |
5.47e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 49.20 E-value: 5.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2647 ELKAALQELESEQGKGRALQSQLEEEQLRHLQRESQSAKALEELRASLETQRAQSSRLCVA-LKHEQTAKDNLQKELRIE 2725
Cdd:pfam02463 170 KKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDyLKLNEERIDLLQELLRDE 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2726 HSRCEALLAQERSQLSELQKDLA----AEKSRTLELSEALRHERLLTEQLSQRTQEacvhqdTQAHHALLQKLKEEKSRV 2801
Cdd:pfam02463 250 QEEIESSKQEIEKEEEKLAQVLKenkeEEKEKKLQEEELKLLAKEEEELKSELLKL------ERRKVDDEEKLKESEKEK 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2802 VDLQAMLEKVQQQALHSQQQLE------AEAQKHCEALRREKEVSATLKSTVEALHTQKRELRCSLEREREKPAWLQAEL 2875
Cdd:pfam02463 324 KKAEKELKKEKEEIEELEKELKeleikrEAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEE 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2876 EQS----HPRLKEQEGRKAARRSAEARQSPAAAEQWRKWQRDKEKLR-ELELQRQRDLHKIKQLQQTVRDLESKDEVPGS 2950
Cdd:pfam02463 404 EKEaqllLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKeELEKQELKLLKDELELKKSEDLLKETQLVKLQ 483
|
330 340 350
....*....|....*....|....*....|..
gi 81295809 2951 RLHLGSARRAAGSDADHLREQQRELEAMRQRL 2982
Cdd:pfam02463 484 EQLELLLSRQKLEERSQKESKARSGLKVLLAL 515
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
2580-2982 |
5.57e-05 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 49.40 E-value: 5.57e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2580 DLQKTLSEEQEKANSVQKLLAAEQTVVRDLKSDL---CESRQKSEQLSRSL-----------CEVQQEVLQLRSMLSSKE 2645
Cdd:pfam01576 163 EFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLkkeEKGRQELEKAKRKLegestdlqeqiAELQAQIAELRAQLAKKE 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2646 NELKAALQELESEQGKGRALQSQLEE--EQLRHLQRESQSAKAleeLRASLETQRAQSSRLCVALKHE---QTAKDNLQK 2720
Cdd:pfam01576 243 EELQAALARLEEETAQKNNALKKIREleAQISELQEDLESERA---ARNKAEKQRRDLGEELEALKTEledTLDTTAAQQ 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2721 ELRiehsrceallAQERSQLSELQKDLAAEKsrtlelsealrherllteqlsqRTQEACVHQDTQAHHALLQKLKEEKSR 2800
Cdd:pfam01576 320 ELR----------SKREQEVTELKKALEEET----------------------RSHEAQLQEMRQKHTQALEELTEQLEQ 367
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2801 VVDLQAMLEKVQQQALHSQQQLEAE----AQKHCEALRREKEVSATLKStVEALHTQKRELRCSLErerEKPAWLQAELE 2876
Cdd:pfam01576 368 AKRNKANLEKAKQALESENAELQAElrtlQQAKQDSEHKRKKLEGQLQE-LQARLSESERQRAELA---EKLSKLQSELE 443
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2877 QSHPRLKEQEGR--KAARRSA---------------EARQSPAAAEQWRKWQRDK----EKLRELELQRQRDLHKIKQLQ 2935
Cdd:pfam01576 444 SVSSLLNEAEGKniKLSKDVSslesqlqdtqellqeETRQKLNLSTRLRQLEDERnslqEQLEEEEEAKRNVERQLSTLQ 523
|
410 420 430 440
....*....|....*....|....*....|....*....|....*...
gi 81295809 2936 QTVRDLESK-DEVPGSRLHLGSARRAAGSDADHLREQQRELEAMRQRL 2982
Cdd:pfam01576 524 AQLSDMKKKlEEDAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKL 571
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
323-783 |
6.46e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 48.61 E-value: 6.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 323 QEAAELKEKLQSEMEKNAQIVKTLKEDWESEKDLclENLRKELsAKHQSEMEDLQNQfqKELAEQRAELEKIFQDKNQAE 402
Cdd:COG4717 71 KELKELEEELKEAEEKEEEYAELQEELEELEEEL--EELEAEL-EELREELEKLEKL--LQLLPLYQELEALEAELAELP 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 403 RALRNLESHHQAAIEKLRE--DLQSEHGRCLEDLEFKFKESEKEKQLELENLQASYEDLKAQSQEEIRRLwsqldsaRTS 480
Cdd:COG4717 146 ERLEELEERLEELRELEEEleELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEEL-------EEA 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 481 RQELSELHEQLLARTSRVEDLEQLKQREKTQHESELEQLRIYFEKKLRDAEKTYQEDLTLLQQRLQGAredALLDSVEVG 560
Cdd:COG4717 219 QEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLL---ALLFLLLAR 295
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 561 LSCVGLEEKPEKGRKDHVDELEPERHKESLPRFQAELEESHRHQLEALESPLCIQheghvsdRCCVETSALGHEWRLEPS 640
Cdd:COG4717 296 EKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQ-------ELLREAEELEEELQLEEL 368
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 641 EGHSQELpwvhLQGVQDGDLEADTERAARVlgletEHKVQLSLLQTELKEEIELLKIENRNLYGKLQhETRLKDDLEKVK 720
Cdd:COG4717 369 EQEIAAL----LAEAGVEDEEELRAALEQA-----EEYQELKEELEELEEQLEELLGELEELLEALD-EEELEEELEELE 438
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 81295809 721 HNL------IEDHQKELNNAKQKTELMK--QEFQRKETDWKVMKEELQREAEEKLTLMLL-----ELREKAESEKQ 783
Cdd:COG4717 439 EELeeleeeLEELREELAELEAELEQLEedGELAELLQELEELKAELRELAEEWAALKLAlelleEAREEYREERL 514
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
330-790 |
6.76e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.91 E-value: 6.76e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 330 EKLQSEMEKNAQIVKTLKEDwesekdlcLENLRKELSAKhqSEMEDLQNQFQKELAEQRAELEKIFQDKNQAERALRNLE 409
Cdd:PRK03918 158 DDYENAYKNLGEVIKEIKRR--------IERLEKFIKRT--ENIEELIKEKEKELEEVLREINEISSELPELREELEKLE 227
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 410 SH------HQAAIEKLREDLQSEHGRcLEDLEFKFKESEK---EKQLELENLQASYEDLKA--QSQEEIRRLWSQLDSAR 478
Cdd:PRK03918 228 KEvkeleeLKEEIEELEKELESLEGS-KRKLEEKIRELEErieELKKEIEELEEKVKELKElkEKAEEYIKLSEFYEEYL 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 479 TSRQELSELHEQLLARTSRVEdlEQLKQREKTqhESELEQLRIYFEKKLRDAEKtYQEDLTLLQQRLQGAREDALLDSVE 558
Cdd:PRK03918 307 DELREIEKRLSRLEEEINGIE--ERIKELEEK--EERLEELKKKLKELEKRLEE-LEERHELYEEAKAKKEELERLKKRL 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 559 VGLSCVGLEEKPEKGRKDhvdELEPERHKESLPRFQAELE---ESHRHQLEALESplciqheghVSDRCCVETSALGHEW 635
Cdd:PRK03918 382 TGLTPEKLEKELEELEKA---KEEIEEEISKITARIGELKkeiKELKKAIEELKK---------AKGKCPVCGRELTEEH 449
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 636 RLEPSEGHSQELpwvhlqgvqdGDLEADTERAARvlgLETEHKVQLSLLQTELKEEIELLKIEnrnlygklqhetRLKDD 715
Cdd:PRK03918 450 RKELLEEYTAEL----------KRIEKELKEIEE---KERKLRKELRELEKVLKKESELIKLK------------ELAEQ 504
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 81295809 716 LEKVKHNLIEDHQKELNNAKQKTELMKQEFQRKETDWKVMKEELQREAEEKLTLMLLELR-EKAESEKQTIINKFE 790
Cdd:PRK03918 505 LKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKlDELEEELAELLKELE 580
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1536-1906 |
7.87e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.52 E-value: 7.87e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1536 LREKLDEFNELAIQKESADRQVLMQEEEIKRLEEMNINIRKKVAQLQEEVEKQKNIVKGLEQDKEVLKKQQMSSLLLAST 1615
Cdd:PRK03918 174 IKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGS 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1616 LQStldagrcpeppsgsppegPEIQLEVTQRALLRRESEVLDLKEQLEKMKgDLESKNEEILHLNLKLDmqnsQTAVSLR 1695
Cdd:PRK03918 254 KRK------------------LEEKIRELEERIEELKKEIEELEEKVKELK-ELKEKAEEYIKLSEFYE----EYLDELR 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1696 ELEEENTSLkviytrSSEIEELKATIENLQenqkrlqkEKAEEIEQLHEVIEKLQHELSLMGPVVHEVSDSQAGSLQSEL 1775
Cdd:PRK03918 311 EIEKRLSRL------EEEINGIEERIKELE--------EKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELER 376
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1776 LCSQAGGPRGQALQGELEAALEAKEALSRLLADQERRHSQaLEALQQRLQGAEEaaELQLAELERNVALREAEVEDMASR 1855
Cdd:PRK03918 377 LKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGE-LKKEIKELKKAIE--ELKKAKGKCPVCGRELTEEHRKEL 453
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 81295809 1856 IQEFEAALKAKEATIAERNLEIDALNQRKaahsAELEAVLLALARIRRALE 1906
Cdd:PRK03918 454 LEEYTAELKRIEKELKEIEEKERKLRKEL----RELEKVLKKESELIKLKE 500
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
835-1601 |
9.14e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.60 E-value: 9.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 835 HCSQCGREPPTAQDGELAAlhvKEDCALQLMLARSRFLEERKEITEKFSAEQDAFLQEAQEQhARELQLLQERHQQQLLS 914
Cdd:PTZ00121 1065 HVGQDEGLKPSYKDFDFDA---KEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKK-AEDARKAEEARKAEDAR 1140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 915 VTAELEARHQAALGELTASLESKQGALLAARVAELQTKHAADlGALETRHLSSLDSLESCYLSEFQTIREEHRQALELLR 994
Cdd:PTZ00121 1141 KAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAAR-KAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARK 1219
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 995 ADFEEQLWKKDSLHQTILTQELEKL--KRKHEGELQSVRDHLRTEVSTELAGTVAHELQGVHQGEFGSEKKTA--LHEKE 1070
Cdd:PTZ00121 1220 AEDAKKAEAVKKAEEAKKDAEEAKKaeEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKAdeAKKAE 1299
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1071 ETLRLQSAQAQpfhQEEKESLSlQLQKKnhqVQQLKDQVLSLSHEIEECRSELEVLQQRRERENREGANLLSMLKADvNL 1150
Cdd:PTZ00121 1300 EKKKADEAKKK---AEEAKKAD-EAKKK---AEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAA-EK 1371
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1151 SHSERGALQDALRRLlglfGETLRAAVTLRSRIGERVGLCLDDAGAGLALSTAPALEETWSDVALPELDRTLSECA---- 1226
Cdd:PTZ00121 1372 KKEEAKKKADAAKKK----AEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAkkad 1447
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1227 EMSSVAEiSSHMRESFLMSPESVRECEQPIRRVFQSLSlaVDGLMEMALDSSRQLEEARQIHSRFEKEFSFKNEETAQVV 1306
Cdd:PTZ00121 1448 EAKKKAE-EAKKAEEAKKKAEEAKKADEAKKKAEEAKK--ADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKA 1524
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1307 RKHQELLECLKEESAAKAElalELHKTQGTLEGFKVETADLKEVLAGKEDSEHRLVLEL---ESLRRQLQQAAQEQAALR 1383
Cdd:PTZ00121 1525 DEAKKAEEAKKADEAKKAE---EKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALrkaEEAKKAEEARIEEVMKLY 1601
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1384 EECTRLWSRGEATATDAEAREAALRKEVEDLTKEQSETRKQAEKDRSAllSQMKILESELEEQLSQHRGCAKQaEAVTAL 1463
Cdd:PTZ00121 1602 EEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKA--EELKKAEEENKIKAAEEAKKAEE-DKKKAE 1678
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1464 EQQVASLDKHLRNQRQFMDEQAAEREHEREEFQQEIQRLEGQLRQAAKPQPWgprdsqqapldgEVELLQQKLREKLDEF 1543
Cdd:PTZ00121 1679 EAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKI------------KAEEAKKEAEEDKKKA 1746
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*...
gi 81295809 1544 NELAIQKESADRQVLMQEEEIKRLEEmninIRKKVAQLQEEVEKQKNIVKGLEQDKEV 1601
Cdd:PTZ00121 1747 EEAKKDEEEKKKIAHLKKEEEKKAEE----IRKEKEAVIEEELDEEDEKRRMEVDKKI 1800
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
270-529 |
1.20e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.21 E-value: 1.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 270 QKEKETALTELREMLNSRRAQELALLQSRQQHELELLREQHAREKEEvVLRCGQEAAELKEKLQSEmEKNAQIVKTLKED 349
Cdd:PTZ00121 1564 KKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAE-EAKKAEEAKIKAEELKKA-EEEKKKVEQLKKK 1641
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 350 WESEKDLCLENLRKELSAKHQSEMEDLQNQFQKELAEqraELEKIFQDKNQAERALRNlESHHQAAIEKLREDLQSEHGR 429
Cdd:PTZ00121 1642 EAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAE---EAKKAEEDEKKAAEALKK-EAEEAKKAEELKKKEAEEKKK 1717
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 430 CLEdlefkFKESEKEKQLELENLQASYEDLKAQSQEeirrlwsqldsARTSRQELSELHEQLLARTSRVEDLEQLKQRE- 508
Cdd:PTZ00121 1718 AEE-----LKKAEEENKIKAEEAKKEAEEDKKKAEE-----------AKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVi 1781
|
250 260
....*....|....*....|.
gi 81295809 509 KTQHESELEQLRIYFEKKLRD 529
Cdd:PTZ00121 1782 EEELDEEDEKRRMEVDKKIKD 1802
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1714-1968 |
1.22e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.13 E-value: 1.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1714 IEELKATIENLQenqkrLQKEKAEEIEQLHEVIEKLQHELSLMgpvvhevsdsQAGSLQSELlcsqaggprgQALQGELE 1793
Cdd:TIGR02168 195 LNELERQLKSLE-----RQAEKAERYKELKAELRELELALLVL----------RLEELREEL----------EELQEELK 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1794 AALEAKEALSRLLADQERRHSQA------LEALQQRLQGAEEAAELQLAELERNVALREAEVEDMASRIQEFEAALKAKE 1867
Cdd:TIGR02168 250 EAEEELEELTAELQELEEKLEELrlevseLEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELE 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1868 ATIAERNLEIDALNQRKAAHSAELEAVLLALARIRRALEQQPLAAGAAPPELQWLRAQCARLSRQLQVLHQRFLRCQVEL 1947
Cdd:TIGR02168 330 SKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARL 409
|
250 260
....*....|....*....|.
gi 81295809 1948 DRRQARRATAHTRVPGAHPQP 1968
Cdd:TIGR02168 410 ERLEDRRERLQQEIEELLKKL 430
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
286-547 |
1.22e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 48.15 E-value: 1.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 286 SRRAQELALLQSRQQHELELLREQHAREKEEVVLRCgqEAAELKEKLqSEMEKNAQIVKTLKEDWESEKDLC-LENLRKE 364
Cdd:COG5022 807 GSRKEYRSYLACIIKLQKTIKREKKLRETEEVEFSL--KAEVLIQKF-GRSLKAKKRFSLLKKETIYLQSAQrVELAERQ 883
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 365 LSAKHQ-----SEMEDLQNQFQKELAEQRAELEKIFQDKNQAeraLRNLESHHQAAIEKLREDLQSEHGRCLEDLEFKFK 439
Cdd:COG5022 884 LQELKIdvksiSSLKLVNLELESEIIELKKSLSSDLIENLEF---KTELIARLKKLLNNIDLEEGPSIEYVKLPELNKLH 960
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 440 ESEKEkqleLENLQASYEDLKAQSQEEIRRLWSQLDSARTSRQELSELHEQLLARTsrvEDLEQLKQREKTQHESELEQL 519
Cdd:COG5022 961 EVESK----LKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQYGALQ---ESTKQLKELPVEVAELQSASK 1033
|
250 260 270
....*....|....*....|....*....|.
gi 81295809 520 RIYFEKKLRDAEKTYQE---DLTLLQQRLQG 547
Cdd:COG5022 1034 IISSESTELSILKPLQKlkgLLLLENNQLQA 1064
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1791-1957 |
1.31e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.99 E-value: 1.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1791 ELEAALEAKEALSRLLADQERRHSQALEALQQ-------RLQGAEEAAEL---QLAELERNVALREAEVEDMASRIQEFE 1860
Cdd:COG4913 243 ALEDAREQIELLEPIRELAERYAAARERLAELeylraalRLWFAQRRLELleaELEELRAELARLEAELERLEARLDALR 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1861 AALKAKEATIAERNLE-IDALNQRKAAHSAELEAVLLALARIRRALEQQPLAAGAAPPELQWLRAQCARLSRQLQVLHQr 1939
Cdd:COG4913 323 EELDELEAQIRGNGGDrLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELE- 401
|
170
....*....|....*...
gi 81295809 1940 flRCQVELDRRQARRATA 1957
Cdd:COG4913 402 --ALEEALAEAEAALRDL 417
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1463-1908 |
1.43e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 47.71 E-value: 1.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1463 LEQQVASLDKHLRNQRQ----------FMDEQAAEREHEREEFQQEIQRLEGQLRQaakpqpwgpRDSQQAPLDGEVELL 1532
Cdd:TIGR04523 80 LEQQIKDLNDKLKKNKDkinklnsdlsKINSEIKNDKEQKNKLEVELNKLEKQKKE---------NKKNIDKFLTEIKKK 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1533 QQKLREKLDEFNELAIQKESADRQVLMQEEEIKRLEEMNINIRKKVAQLQE-----EVEKQKNivKGLEQDKEVLKKQQm 1607
Cdd:TIGR04523 151 EKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELllsnlKKKIQKN--KSLESQISELKKQN- 227
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1608 sslllaSTLQSTLDagrcpeppsgsppeGPEIQLEVTQRALLRRESEVLDLKEQLEKMKGDLESKNEEILHLNLKLDMQN 1687
Cdd:TIGR04523 228 ------NQLKDNIE--------------KKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELE 287
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1688 SQtavsLRELEEENTSLKViYTRSSEIEELKATIENlQENQKR-LQKEKAEE---IEQLHEVIEKLQHELSlmgpvvheV 1763
Cdd:TIGR04523 288 KQ----LNQLKSEISDLNN-QKEQDWNKELKSELKN-QEKKLEeIQNQISQNnkiISQLNEQISQLKKELT--------N 353
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1764 SDSQAGSLQSELLCSQAggpRGQALQGELEAALEAKEALSRLLADQERRHSQAlEALQQRLQGAEEAAELQLAELERNVA 1843
Cdd:TIGR04523 354 SESENSEKQRELEEKQN---EIEKLKKENQSYKQEIKNLESQINDLESKIQNQ-EKLNQQKDEQIKKLQQEKELLEKEIE 429
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 81295809 1844 LREAEVEDMASRIQEFeaalkakEATIAERNLEIDALNQRKAAHSAELEAVLLALARIRRALEQQ 1908
Cdd:TIGR04523 430 RLKETIIKNNSEIKDL-------TNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQK 487
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1418-1605 |
1.54e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.07 E-value: 1.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1418 QSETRKQAEKDRSALLSQMKILESELEEQLSQHRGCAKQAEA----VTALEQQVASLDKHLRNQRQFMDEQAAEREHERE 1493
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAAlerrIAALARRIRALEQELAALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1494 EFQQEIQRLEGQLRQAAKPQPWGPRD---SQQAPLDG----------------EVELLQQKLREKLDEFNELAIQKESAD 1554
Cdd:COG4942 98 ELEAQKEELAELLRALYRLGRQPPLAlllSPEDFLDAvrrlqylkylaparreQAEELRADLAELAALRAELEAERAELE 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 81295809 1555 RQVLMQEEEIKRLEEMNINIRKKVAQLQEEVEKQKNIVKGLEQDKEVLKKQ 1605
Cdd:COG4942 178 ALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEAL 228
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
1639-1751 |
1.65e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 47.55 E-value: 1.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1639 IQLEVTQRALLRRESEVLDLKEQLEKMKGDLESKNEEILHLNLKLDmqnsqtavslRELEEENTSLKviytRSSEIEELK 1718
Cdd:COG2433 406 RELTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERIERLERELS----------EARSEERREIR----KDREISRLD 471
|
90 100 110
....*....|....*....|....*....|...
gi 81295809 1719 ATIENLqenQKRLQKEKaEEIEQLHEVIEKLQH 1751
Cdd:COG2433 472 REIERL---ERELEEER-ERIEELKRKLERLKE 500
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
323-830 |
1.80e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 47.32 E-value: 1.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 323 QEAAELKEKLQsemEKNAQIVKTLKEDWESEKDLCLENLRKELSAKHQSEMEDLQNQFQKELAEQRAELEKIFQDKNQAE 402
Cdd:TIGR04523 124 VELNKLEKQKK---ENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLE 200
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 403 RALRNLESHhqaaIEKLREdLQSEhgrcLEDLEFKFKESEK----------EKQLELENLQASYEDLKAQSQEEIRRLWS 472
Cdd:TIGR04523 201 LLLSNLKKK----IQKNKS-LESQ----ISELKKQNNQLKDniekkqqeinEKTTEISNTQTQLNQLKDEQNKIKKQLSE 271
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 473 QLDSARTSRQELSELHEQLLARTSRVEDLEQLKQREKTQH-ESELEQLriyfEKKLRDAEKTYQEDLTLLQQrlqgared 551
Cdd:TIGR04523 272 KQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKElKSELKNQ----EKKLEEIQNQISQNNKIISQ-------- 339
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 552 alldsvevglscvgLEEKPEKGRKDHVD-ELEPERHKESLPRFQAELE------ESHRHQLEALESplciqheghvsdrc 624
Cdd:TIGR04523 340 --------------LNEQISQLKKELTNsESENSEKQRELEEKQNEIEklkkenQSYKQEIKNLES-------------- 391
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 625 cvETSALghEWRLEPSEGHSQELPwvhlQGVQDGDLEADTeraarvlgLETEHKvQLSLLQTELKEEIELLKIENRNLYG 704
Cdd:TIGR04523 392 --QINDL--ESKIQNQEKLNQQKD----EQIKKLQQEKEL--------LEKEIE-RLKETIIKNNSEIKDLTNQDSVKEL 454
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 705 KLQHETRLKDDLEKVkhnlIEDHQKELNNAKQKTELMKQEFQRKETDWKVMKEElQREAEEKLTLM------LLELREKA 778
Cdd:TIGR04523 455 IIKNLDNTRESLETQ----LKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEE-KKELEEKVKDLtkkissLKEKIEKL 529
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|..
gi 81295809 779 ESEKQTIINKfeLREAEMRQLQDQQAAQILDLERSLTEQQGRLQQLEQDLTS 830
Cdd:TIGR04523 530 ESEKKEKESK--ISDLEDELNKDDFELKKENLEKEIDEKNKEIEELKQTQKS 579
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
321-551 |
1.86e-04 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 47.20 E-value: 1.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 321 CGQEAAEL---KEKLQSEMEKNAQIVKTLKEDWESEkdlclenlRKELSAKHQSEMEDLQNQFQK--ELAEQRAELEKIF 395
Cdd:pfam07888 39 CLQERAELlqaQEAANRQREKEKERYKRDREQWERQ--------RRELESRVAELKEELRQSREKheELEEKYKELSASS 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 396 QDKNQAERALRNLESHHQAAIEKLREDLQSEHGRCLE---DLEfKFKESEKEKQLELENLQASYEDLKA---QSQEEIRR 469
Cdd:pfam07888 111 EELSEEKDALLAQRAAHEARIRELEEDIKTLTQRVLEretELE-RMKERAKKAGAQRKEEEAERKQLQAklqQTEEELRS 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 470 LWSQLDSARTSRQELSELHEQLLARTSRVEDLEQLKQREKTQHESELEQLRiyfekklrdaekTYQEDLTLLQQRLQGAR 549
Cdd:pfam07888 190 LSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAENEALLEELR------------SLQERLNASERKVEGLG 257
|
..
gi 81295809 550 ED 551
Cdd:pfam07888 258 EE 259
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1652-1916 |
2.17e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 47.34 E-value: 2.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1652 ESEVLDLKEQLEKMKGDLESKNEEILHLNlkldmQNSQTAVSLREleEENTSLKVIYTRSSEIEELKATIENLQENQKRL 1731
Cdd:PRK02224 198 EKEEKDLHERLNGLESELAELDEEIERYE-----EQREQARETRD--EADEVLEEHEERREELETLEAEIEDLRETIAET 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1732 QKEK---AEEIEQLHEVIEKLQHELS-LMGPVVHEVSDSQAGSLQSELLCSQAGGPRgQALQGELEAALEAKEALSRLLA 1807
Cdd:PRK02224 271 EREReelAEEVRDLRERLEELEEERDdLLAEAGLDDADAEAVEARREELEDRDEELR-DRLEECRVAAQAHNEEAESLRE 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1808 DQERRHSQALEALQQ--RLQGAEEAAELQLAELERNVALREAEVEDMASRIQEFEAALKAKEATIAERNLEIDALNQRKA 1885
Cdd:PRK02224 350 DADDLEERAEELREEaaELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREA 429
|
250 260 270
....*....|....*....|....*....|.
gi 81295809 1886 AHSAELEAvllalARIRRALEQQPLAAGAAP 1916
Cdd:PRK02224 430 ELEATLRT-----ARERVEEAEALLEAGKCP 455
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
2650-2881 |
2.54e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.30 E-value: 2.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2650 AALQELESEQGKGRALQSQLEEEQlRHLQRESQSAKALEELRASLETQRAQSSRLCVALKHEQTAKDNLQKELRIEHSRC 2729
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELE-KELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2730 EALLAQERSQLSElQKDLAAEKSRTLELSEALRHERLLteQLSQRTQEacVHQDTQAHHALLQKLKEEKSRVVDLQAMLE 2809
Cdd:COG4942 96 RAELEAQKEELAE-LLRALYRLGRQPPLALLLSPEDFL--DAVRRLQY--LKYLAPARREQAEELRADLAELAALRAELE 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 81295809 2810 KVQQQALHSQQQLEAEAQKHCEALRREKEVSATLKSTVEALHTQKRELRCSLEREREKPAWLQAELEQSHPR 2881
Cdd:COG4942 171 AERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
246-484 |
2.60e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 47.04 E-value: 2.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 246 ELEALRLSLSNMHTAQLELTQANLQKEKETALTEL---REMLNSRRAQELALLQSRQQHELELLREQHAREKEEVVLRCG 322
Cdd:pfam17380 349 ELERIRQEERKRELERIRQEEIAMEISRMRELERLqmeRQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAE 428
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 323 QEAAELKEKLQSEMEKNAQIVKTLKEDWESEKDlcLENLRKELSAKHQSEMEDLQNQFQKELAEQraELEKIFQDKNQAE 402
Cdd:pfam17380 429 QEEARQREVRRLEEERAREMERVRLEEQERQQQ--VERLRQQEEERKRKKLELEKEKRDRKRAEE--QRRKILEKELEER 504
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 403 RALRNLESHHQAAIEKLREDLQS-----EHGRCLEDLEFKFKESEKEKQLELENLQASYEDLKAQSQEEIRRLWSQLDSA 477
Cdd:pfam17380 505 KQAMIEEERKRKLLEKEMEERQKaiyeeERRREAEEERRKQQEMEERRRIQEQMRKATEERSRLEAMEREREMMRQIVES 584
|
....*..
gi 81295809 478 RTSRQEL 484
Cdd:pfam17380 585 EKARAEY 591
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1319-1906 |
2.66e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 46.96 E-value: 2.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1319 ESAAKAELALE--LHKTQGTLEgfkvetaDLKEVLAGKEDSE-HRLVLELESLRRQLQQAAQEQAALREECTRlwSRGEA 1395
Cdd:PRK02224 169 ERASDARLGVErvLSDQRGSLD-------QLKAQIEEKEEKDlHERLNGLESELAELDEEIERYEEQREQARE--TRDEA 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1396 TATDAEARE-----AALRKEVEDLTKEQSETRKQAEKDRSALLSQMKILEsELEEQLSQHRG-CAKQAEAVTALEQQVAS 1469
Cdd:PRK02224 240 DEVLEEHEErreelETLEAEIEDLRETIAETEREREELAEEVRDLRERLE-ELEEERDDLLAeAGLDDADAEAVEARREE 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1470 LDKHLRNQRQFMDEQaaerehereefQQEIQRLEGQLRQAAKpqpwgprdsqqapldgEVELLQQKLREKLDEFNELAIQ 1549
Cdd:PRK02224 319 LEDRDEELRDRLEEC-----------RVAAQAHNEEAESLRE----------------DADDLEERAEELREEAAELESE 371
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1550 KESADRQVLMQEEEIKRLEEMNINIRKKVAQLQEEVEKQKNIVKGLEQDKEVLKKQQMSsllLASTLQST---------- 1619
Cdd:PRK02224 372 LEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAE---LEATLRTArerveeaeal 448
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1620 LDAGRCPEPPSGSPPEGPEIQLEVTQRALLRRESEVLDLKEQLEKMKGDLESkneeilhlnlkldmqnsqtAVSLRELEe 1699
Cdd:PRK02224 449 LEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLER-------------------AEDLVEAE- 508
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1700 entslkviyTRSSEIEELKATIENLQENQKRLQKEKAEEIEQLHEVIEKLQHELslmgpvvhEVSDSQAGSLQSEllcSQ 1779
Cdd:PRK02224 509 ---------DRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEA--------EEKREAAAEAEEE---AE 568
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1780 AGGPRGQALQGELEAALEAKEALSRLLADQERRHS--QALEALQQRLQGAEEAAEL---QLAEL-ERNVALR----EAEV 1849
Cdd:PRK02224 569 EAREEVAELNSKLAELKERIESLERIRTLLAAIADaeDEIERLREKREALAELNDErreRLAEKrERKRELEaefdEARI 648
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*..
gi 81295809 1850 EDMASRIQEFEAALKAKEATIAERNLEIDALNQRKAAHSAELEAvLLALARIRRALE 1906
Cdd:PRK02224 649 EEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEE-LEELRERREALE 704
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
421-1140 |
2.85e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 47.04 E-value: 2.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 421 EDLQSEHGRCLEDLEFKFKESEKEKQLELENLQASYEDLKAQSQEEIRRLWSQLDSARTSRQELSELHEQLLARTSRVED 500
Cdd:pfam15921 77 ERVLEEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEA 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 501 LEQLKQREKTQHESELEQLR---------------IYFEKKLRDAEKTYQED-LTLLQQRLQGAREDALLDSVEVGLSCV 564
Cdd:pfam15921 157 AKCLKEDMLEDSNTQIEQLRkmmlshegvlqeirsILVDFEEASGKKIYEHDsMSTMHFRSLGSAISKILRELDTEISYL 236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 565 gleekpeKGRKDHVDELEPERHKESLPRFQAELEEsHRHQLEALESPLCIQHEGHVSDRCCVETSALGHEWRLEPSEGHS 644
Cdd:pfam15921 237 -------KGRIFPVEDQLEALKSESQNKIELLLQQ-HQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQA 308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 645 QELPWVHLQGVQD-----GDLEADTERAARVLGLETEH-KVQLSLLQTELKE---EIELLKIENRNLYGKLQ------HE 709
Cdd:pfam15921 309 RNQNSMYMRQLSDlestvSQLRSELREAKRMYEDKIEElEKQLVLANSELTEartERDQFSQESGNLDDQLQklladlHK 388
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 710 TRLKDDLEKVKHNLIEDHQK----ELNNAKQKTELMKQEFQRKETDWKVMKEELQREAEEKLTlmLLELREKAESEKQTI 785
Cdd:pfam15921 389 REKELSLEKEQNKRLWDRDTgnsiTIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMA--AIQGKNESLEKVSSL 466
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 786 INKFELREAEMRQLQDQQAAQILDL---ERSLTEQQGRLQQLEQDLtsddalhcsqcgreppTAQDGELAALHVKEDCAL 862
Cdd:pfam15921 467 TAQLESTKEMLRKVVEELTAKKMTLessERTVSDLTASLQEKERAI----------------EATNAEITKLRSRVDLKL 530
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 863 QLMlarsRFLEERKEITEKFSAEQDAF-LQEAQEQHARELQLLQERHQQQLLSVTAELEARHQAALGELTASLESKQGAL 941
Cdd:pfam15921 531 QEL----QHLKNEGDHLRNVQTECEALkLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLEL 606
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 942 ----------------LAARVAELQTKHA--ADLGALETRHLSSLDSLESCYLSEFQTIREEhrqaLELLRADFE--EQL 1001
Cdd:pfam15921 607 qefkilkdkkdakireLEARVSDLELEKVklVNAGSERLRAVKDIKQERDQLLNEVKTSRNE----LNSLSEDYEvlKRN 682
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1002 WKKDSLHQTILTQELEKLKRKHEGELQSVRDHLRT-EVSTELAGTVAHELQGVHQGEFGseKKTALHEKEETLRLQSAQA 1080
Cdd:pfam15921 683 FRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSmEGSDGHAMKVAMGMQKQITAKRG--QIDALQSKIQFLEEAMTNA 760
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 81295809 1081 ---QPFHQEEKESLSLQLQkknhqvqqlkdqvlSLSHEIEECRSELEVLQQRRERENREGANL 1140
Cdd:pfam15921 761 nkeKHFLKEEKNKLSQELS--------------TVATEKNKMAGELEVLRSQERRLKEKVANM 809
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
372-607 |
3.48e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.60 E-value: 3.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 372 EMEDLQNQFQKELAEQRAELEKIFQDKNQAERALRNLESHHQAA----------IEKLREDLQSEHgRCLEDLEFKFKES 441
Cdd:TIGR02169 685 GLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLeqeeeklkerLEELEEDLSSLE-QEIENVKSELKEL 763
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 442 EK---EKQLELENLQASYEDLKAQ-SQEEIRRLWSQLDSARTSRQELSELHEQLLARTSRVEDLEQLKQREKtqheSELE 517
Cdd:TIGR02169 764 EArieELEEDLHKLEEALNDLEARlSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEI----QELQ 839
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 518 QLRIYFEKKlRDAEKTYQEDLTLLQQRLQGAREDALLDSVEVGLSCVGLEEKpekgRKDHVDELEPERHKESLPRFQAEL 597
Cdd:TIGR02169 840 EQRIDLKEQ-IKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKE----RDELEAQLRELERKIEELEAQIEK 914
|
250
....*....|
gi 81295809 598 EESHRHQLEA 607
Cdd:TIGR02169 915 KRKRLSELKA 924
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1275-1748 |
3.97e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 46.67 E-value: 3.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1275 LDSSRQLEEARQIHSRFEKEFSFKNEETAQVVRKHQELLEcLKEESAAKAELALELHKTQGTLEGFKVETADLKEVLAGK 1354
Cdd:PTZ00121 1359 AEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKK-KAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAK 1437
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1355 EDSEHRLVLElESLRRQLQQAAQEQAALREEctrlwsrgEATATDAEAREAALRKEVEDLTKEQSETRKQAEKDRSALLS 1434
Cdd:PTZ00121 1438 KKAEEAKKAD-EAKKKAEEAKKAEEAKKKAE--------EAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEA 1508
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1435 QMKILESELEEQLSQHRGCAKQAEAVTALEQQVASLDKHLRNQRQFMDEQAAEREHEREEFQQEIQRLEGQLRQAAKpqp 1514
Cdd:PTZ00121 1509 KKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEE--- 1585
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1515 wgPRDSQQAPLDGEVELLQQKLREKLDEfnelaIQKESADRqvlMQEEEIKRLEEmninIRKKVAQLQEEVEKQKnivkg 1594
Cdd:PTZ00121 1586 --AKKAEEARIEEVMKLYEEEKKMKAEE-----AKKAEEAK---IKAEELKKAEE----EKKKVEQLKKKEAEEK----- 1646
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1595 lEQDKEVLKKQQMSSLLLASTLQSTLDAGRCPEPPSGSPPEGPEIQLEVTQRALLRRESEVLDLKEQLEKMKGDLESKNE 1674
Cdd:PTZ00121 1647 -KKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAE 1725
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 81295809 1675 EILHLNL----KLDMQNSQTAVSLRELEEENTSLKviytrSSEIEELKATIENLQENQKRLQKEKAEEIEQLHEVIEK 1748
Cdd:PTZ00121 1726 EENKIKAeeakKEAEEDKKKAEEAKKDEEEKKKIA-----HLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDK 1798
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
216-609 |
4.40e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 46.08 E-value: 4.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 216 EQECELAITDLESGREDEAGLHQSQAVHGLELEALRLSLSNMHTAQLELTQANLQKEKETALTELREMLNSRRAQELALL 295
Cdd:COG1196 322 EEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQ 401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 296 QSRQQHELELLREQHAREKEEVVLRCGQEAAELKEKLQSEMEKNAQIVKTLKEDwesekdlclenLRKELSAKHQSEMED 375
Cdd:COG1196 402 LEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELE-----------EEEEALLELLAELLE 470
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 376 LQNQFQKELAEQRAELEKIFQDKNQAERALRNLESHHQAAIEKLREDLQSEHGRCLEDLEFKFKESEKEKQLELENLQAS 455
Cdd:COG1196 471 EAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQN 550
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 456 Y------------EDLKAQSQEEIRRLWSQLDSARTSRQELSELHEQLLARTSRVEDLEQLKQREKTQHESELEQLRiyf 523
Cdd:COG1196 551 IvveddevaaaaiEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTL--- 627
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 524 EKKLRDAEKTYQEDLTLLQQRLQGAREDALLDSVEVGLSCVGLEEKPEKGRKDHVDELEPERHKESLPRFQAELEESHRH 603
Cdd:COG1196 628 VAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEER 707
|
....*.
gi 81295809 604 QLEALE 609
Cdd:COG1196 708 ELAEAE 713
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
984-1479 |
5.00e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.91 E-value: 5.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 984 EEHRQALELLRADFEEQLWKKDSLHQTIltQELEKLKRKHEGELQSVRDHLRTEVSTELAGTVAHELQGV-HQGEFGSEK 1062
Cdd:COG4717 77 EEELKEAEEKEEEYAELQEELEELEEEL--EELEAELEELREELEKLEKLLQLLPLYQELEALEAELAELpERLEELEER 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1063 KTALHEKEETLRLQSAQAQPFHQEEKESLSLQLQKKNHQVQQLKDQVLSLSHEIEECRSELEVLQQRRERENREGANLLS 1142
Cdd:COG4717 155 LEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLEN 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1143 MLkadvnlshsERGALQDALRRLLGLFGeTLRAAVTLRSRIGERVGLCLDDAGAGLALSTAPALEETWSDVALPELDRTL 1222
Cdd:COG4717 235 EL---------EAAALEERLKEARLLLL-IAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEA 304
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1223 SECAEMSSVAEISshmresflmspesvrecEQPIRRVFQSLSLAVDGLMEMALDSSRQLEEARQIHSRfekefsfkneet 1302
Cdd:COG4717 305 EELQALPALEELE-----------------EEELEELLAALGLPPDLSPEELLELLDRIEELQELLRE------------ 355
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1303 aqvvrkhqelleclKEESAAKAELALELHKTQGTLEGFKVETADLKEVLAGKEDSEHRLVLELESLRRQLQQAAQEQAAL 1382
Cdd:COG4717 356 --------------AEELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEEL 421
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1383 REECTRlwSRGEATATDAEAREAALRKEVEDLTKEQSETR---KQAEKDRSalLSQmkiLESELEEQLSQHRGCAKQAEA 1459
Cdd:COG4717 422 LEALDE--EELEEELEELEEELEELEEELEELREELAELEaelEQLEEDGE--LAE---LLQELEELKAELRELAEEWAA 494
|
490 500
....*....|....*....|
gi 81295809 1460 VTALEQQVASLDKHLRNQRQ 1479
Cdd:COG4717 495 LKLALELLEEAREEYREERL 514
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1531-1949 |
5.04e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.91 E-value: 5.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1531 LLQQKLREKLDE-FNELAIQKESADRQVLMQEEEIKRLEEMN---INIRKKVAQLQEEVEKQKNIVKGLEQDKEVLKKQQ 1606
Cdd:COG4717 46 MLLERLEKEADElFKPQGRKPELNLKELKELEEELKEAEEKEeeyAELQEELEELEEELEELEAELEELREELEKLEKLL 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1607 MSSLLLAstlqstldagrcpeppSGSPPEGPEIQLEVTQRALLRRESEVLDLKEQLEKMKGDLESKNEEILHLNLKLDMQ 1686
Cdd:COG4717 126 QLLPLYQ----------------ELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLA 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1687 NSQTAVSLRE-----LEEENTSLKVIYTRSSEIEELKATIENLQENQKRLQKEKAEEIEQLHEVIEKLQHELSLMGPVVH 1761
Cdd:COG4717 190 TEEELQDLAEeleelQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLL 269
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1762 EVSDSQAGSL----------------QSELLCSQAGGPRGQALQGELE--------AALEAKEALSRLLADQERRHSQAL 1817
Cdd:COG4717 270 SLILTIAGVLflvlgllallflllarEKASLGKEAEELQALPALEELEeeeleellAALGLPPDLSPEELLELLDRIEEL 349
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1818 EALQQRLQGAEEAAELQLAELERNVALREAEVEDmasrIQEFEAALKAKEatiaernlEIDALNQRKAAHSAELEAVLLA 1897
Cdd:COG4717 350 QELLREAEELEEELQLEELEQEIAALLAEAGVED----EEELRAALEQAE--------EYQELKEELEELEEQLEELLGE 417
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|..
gi 81295809 1898 LARIRRALEQQPLAAgaappELQWLRAQCARLSRQLQVLHQRFLRCQVELDR 1949
Cdd:COG4717 418 LEELLEALDEEELEE-----ELEELEEELEELEEELEELREELAELEAELEQ 464
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
293-508 |
5.35e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.53 E-value: 5.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 293 ALLQSRQQHELELLREQHAREKEEVvlrcgQEAAELKEKLQSEMEK-NAQIVKTLKEDWESEKDLCLENLRKELSAKHQS 371
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKEL-----AALKKEEKALLKQLAAlERRIAALARRIRALEQELAALEAELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 372 EMEDLQNQFQKELAEQRAELEKI-----------FQDKNQAERALRNLES---HHQAAIEKLREDLQSehgrcLEDLEFK 437
Cdd:COG4942 94 ELRAELEAQKEELAELLRALYRLgrqpplalllsPEDFLDAVRRLQYLKYlapARREQAEELRADLAE-----LAALRAE 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 81295809 438 FKESEKEKQL---ELENLQASYEDLKAQSQEEIRRLWSQLDSARTSRQELSELHEQLLARTSRVEDLEQLKQRE 508
Cdd:COG4942 169 LEAERAELEAllaELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1306-1876 |
5.83e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.83 E-value: 5.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1306 VRKHQELLECLKEESAAKAELALELHKTQGTLEGFKVETADLKEVLAGKEDSEHRLVLELESLRRQLQQAAQEQAALREE 1385
Cdd:PRK03918 226 LEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEY 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1386 CTRLwSRGEATATDAEAREAALRKEVEDLTKEQSETRKQAEKdrsallsqmkilESELEEQLSQHRGCAKQAEAVTALEQ 1465
Cdd:PRK03918 306 LDEL-REIEKRLSRLEEEINGIEERIKELEEKEERLEELKKK------------LKELEKRLEELEERHELYEEAKAKKE 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1466 QVASLDKHLRNqrqfmdeqaaerehereefqQEIQRLEGQLRQAAKPQPWGPRDSQQapLDGEVELLQQKLREKLDEFNE 1545
Cdd:PRK03918 373 ELERLKKRLTG--------------------LTPEKLEKELEELEKAKEEIEEEISK--ITARIGELKKEIKELKKAIEE 430
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1546 LAIQK----------ESADRQVLMQE--EEIKRLEEMNINIRKKVAQLQEEVEKqknIVKGLEQDKEVLKKQQMSSLL-- 1611
Cdd:PRK03918 431 LKKAKgkcpvcgrelTEEHRKELLEEytAELKRIEKELKEIEEKERKLRKELRE---LEKVLKKESELIKLKELAEQLke 507
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1612 LASTLQSTLDAGRCPEPPSGSPPEGPEIQLEVTQRALLRRESEVLDLK---EQLEKMKGDLESKNEEILHLNLKLDMQns 1688
Cdd:PRK03918 508 LEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKkklAELEKKLDELEEELAELLKELEELGFE-- 585
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1689 qtavSLRELEEENTSLKVIYTRSSEIEELKATIENLQENQKRLQ---KEKAEEIEQLHEVIEKLQHELslmgpvvhevsd 1765
Cdd:PRK03918 586 ----SVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEeelDKAFEELAETEKRLEELRKEL------------ 649
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1766 SQAGSLQSEllcsqaggprgqalqGELEAALEAKEALSRLLADQERRhsqaLEALQQRLQGAEEAAELQLAEL-ERNVAL 1844
Cdd:PRK03918 650 EELEKKYSE---------------EEYEELREEYLELSRELAGLRAE----LEELEKRREEIKKTLEKLKEELeEREKAK 710
|
570 580 590
....*....|....*....|....*....|...
gi 81295809 1845 REAEV-EDMASRIQEFEAALKAKEATIAERNLE 1876
Cdd:PRK03918 711 KELEKlEKALERVEELREKVKKYKALLKERALS 743
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
2462-2976 |
6.03e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 45.88 E-value: 6.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2462 EKEQEMQGVELQPRLSGSDLGGHSSLLERLEKIIREQGDLQEKSLehlrlpdrSSLLSEIQALRAQLRMTHLQNQEKLQH 2541
Cdd:pfam15921 275 EHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQL--------SDLESTVSQLRSELREAKRMYEDKIEE 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2542 LRTALTSAEARGSQQEHQlRRQVEllaykvEQEKCIAGDLQKTLSEEQEKansvQKLLAAEQTVVRDLKSDLCESRQKSE 2621
Cdd:pfam15921 347 LEKQLVLANSELTEARTE-RDQFS------QESGNLDDQLQKLLADLHKR----EKELSLEKEQNKRLWDRDTGNSITID 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2622 QLSRSLCEVQQEVLQLRSMLSSKENELKAAL-QELESEQGKGRALQ------SQLE--EEQLRhlqresqsaKALEELRA 2692
Cdd:pfam15921 416 HLRRELDDRNMEVQRLEALLKAMKSECQGQMeRQMAAIQGKNESLEkvssltAQLEstKEMLR---------KVVEELTA 486
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2693 ---SLETQRAQSSRLCVALKHEQTAKDNLQKELRIEHSRCEALLAQ------ERSQLSELQKDLAAEKsrtLELSEALRH 2763
Cdd:pfam15921 487 kkmTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQElqhlknEGDHLRNVQTECEALK---LQMAEKDKV 563
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2764 ERLLTEQLSQRTQEACVHQDT----QAHHALLQK----------------------LKEEKSRVVDLQAMLEKVQQQALH 2817
Cdd:pfam15921 564 IEILRQQIENMTQLVGQHGRTagamQVEKAQLEKeindrrlelqefkilkdkkdakIRELEARVSDLELEKVKLVNAGSE 643
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2818 SQQQLEAEAQKHCEALRREKEVSATLKSTVEALHTQKRELRCSLEREREKPAWL-------QAELEQSHPRLKEQEGRKA 2890
Cdd:pfam15921 644 RLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLkmqlksaQSELEQTRNTLKSMEGSDG 723
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2891 -ARRSAEARQSPAAAE--QWRKWQRDKEKLRELELQRQRDLHKIKqlqqtvrdlESKDEVPGSRLHLGSARRAAGSDADH 2967
Cdd:pfam15921 724 hAMKVAMGMQKQITAKrgQIDALQSKIQFLEEAMTNANKEKHFLK---------EEKNKLSQELSTVATEKNKMAGELEV 794
|
....*....
gi 81295809 2968 LREQQRELE 2976
Cdd:pfam15921 795 LRSQERRLK 803
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
284-523 |
6.49e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 45.69 E-value: 6.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 284 LNSRRAQELALLQSRQQHELELLREQHAREKEEVVLRCGQEAAELKEKLQSEMEKNAQIVKTLKE----DWE---SEKDL 356
Cdd:PRK05771 14 LKSYKDEVLEALHELGVVHIEDLKEELSNERLRKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKvsvkSLEeliKDVEE 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 357 CLENLRKELSAKHqSEMEDLQNQfQKELAEQRAELEKiFQDKNQAERALRNLESHHQAA----IEKLREDLQSEHGRCLE 432
Cdd:PRK05771 94 ELEKIEKEIKELE-EEISELENE-IKELEQEIERLEP-WGNFDLDLSLLLGFKYVSVFVgtvpEDKLEELKLESDVENVE 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 433 DLEFK--------------FKESEKE-KQLELENLQASYEDLkaqSQEEIRRLWSQLDSArtsRQELSELHEQLLARTSR 497
Cdd:PRK05771 171 YISTDkgyvyvvvvvlkelSDEVEEElKKLGFERLELEEEGT---PSELIREIKEELEEI---EKERESLLEELKELAKK 244
|
250 260
....*....|....*....|....*.
gi 81295809 498 VEDlEQLKQREKTQHESELEQLRIYF 523
Cdd:PRK05771 245 YLE-ELLALYEYLEIELERAEALSKF 269
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
2486-3082 |
6.84e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 45.73 E-value: 6.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2486 SLLERLEKIIREQGDLQEKSLEHLR-LPDRSSLLSEIQALRAQLRMTHLQNQEKLQHLRTALTSAEARGSQQEHQLRRQV 2564
Cdd:pfam02463 230 DYLKLNEERIDLLQELLRDEQEEIEsSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRK 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2565 ELLAYKVEQEKCIAGDLQKTLSEEQEKANSVQKLLAAEQTVVRDLKSDLCESRQKSEQLSRSLCEVQQEVLQLRSMLSSK 2644
Cdd:pfam02463 310 VDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSA 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2645 EnELKAALQELESEQGKGRALQSQLEEEQLRHLQRESQSAKA-LEELRASLETQRAQSSRLCVAL-KHEQTAKDNLQKEL 2722
Cdd:pfam02463 390 A-KLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEiLEEEEESIELKQGKLTEEKEELeKQELKLLKDELELK 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2723 RIEHSRCEALLAQERSQLSELQKDLAAEKSRTLELSEALRHERLLTEQLSQRTQEAC-VHQDTQAHHALLQKLKEEKSRV 2801
Cdd:pfam02463 469 KSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIIsAHGRLGDLGVAVENYKVAISTA 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2802 VDLQAMLEKVQQQALHSQQQLEAEAQKHCEALRREKEVSATLKST-----VEALHTQKRELRCSLEREREKPAWLQAELE 2876
Cdd:pfam02463 549 VIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSiavleIDPILNLAQLDKATLEADEDDKRAKVVEGI 628
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2877 QSHPRLKEQEGRKAARRSAEARQSPAAAEQWRKwqrdKEKLRELELQRQRDLHKIKQLQQTVRDLESKDEVPGSRLHLGS 2956
Cdd:pfam02463 629 LKDTELTKLKESAKAKESGLRKGVSLEEGLAEK----SEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKK 704
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2957 ARRAAGSDADHLREQQRELEAMRQRLLSAARLLTSFTSQAVDRTVNDWTSSNEKA---VMSLLHTLEELKSDLSRPTSSQ 3033
Cdd:pfam02463 705 EQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKeekEEEKSELSLKEKELAEEREKTE 784
|
570 580 590 600
....*....|....*....|....*....|....*....|....*....
gi 81295809 3034 KKMAAELQFQFVDVLLKDNVSLTKALSTVTQEKLELSRAVSKLEKLLKH 3082
Cdd:pfam02463 785 KLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEE 833
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
287-507 |
7.13e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.68 E-value: 7.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 287 RRAQELALLQSRQQHELELLREQHAREkeevvlrcgQEAAELKEKLQSEMEK-NAQIVKTLKEDWESEkdlcLENLRKEL 365
Cdd:COG4913 238 ERAHEALEDAREQIELLEPIRELAERY---------AAARERLAELEYLRAAlRLWFAQRRLELLEAE----LEELRAEL 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 366 sAKHQSEMEDLQNQfQKELAEQRAELEKI-----FQDKNQAERALRNLESHhQAAIEKLREDLQSEhgrcLEDLEFKFKE 440
Cdd:COG4913 305 -ARLEAELERLEAR-LDALREELDELEAQirgngGDRLEQLEREIERLERE-LEERERRRARLEAL----LAALGLPLPA 377
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 81295809 441 SEK---EKQLELENLQASYEDLKAQSQEEIRRLWSQLDSARTSRQELSELHEQLLARTSRV-EDLEQLKQR 507
Cdd:COG4913 378 SAEefaALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIpARLLALRDA 448
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
2560-2753 |
7.31e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.68 E-value: 7.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2560 LRRQVELLAYKVEqekciagdLQKTLSEEQEKANSVQKLLAAEQTVVRDLKSDLCESRQksEQLSRSLCEVQQEVLQLRS 2639
Cdd:COG4913 247 AREQIELLEPIRE--------LAERYAAARERLAELEYLRAALRLWFAQRRLELLEAEL--EELRAELARLEAELERLEA 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2640 MLSSKENELKAALQELESEQGKGRA-LQSQLE--EEQLRHLQRESQS-AKALEELRASLETQRAQSSRLCVALKHEQTAK 2715
Cdd:COG4913 317 RLDALREELDELEAQIRGNGGDRLEqLEREIErlERELEERERRRARlEALLAALGLPLPASAEEFAALRAEAAALLEAL 396
|
170 180 190
....*....|....*....|....*....|....*...
gi 81295809 2716 DNLQKELRIEHSRCEALLAQERSQLSELQKDLAAEKSR 2753
Cdd:COG4913 397 EEELEALEEALAEAEAALRDLRRELRELEAEIASLERR 434
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
693-1136 |
7.47e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 45.48 E-value: 7.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 693 ELLKIENRNlyGKLQHETRLKDDLEKVKHnLIEDHQKELNNAKQKTELMKQEFQRKETDWKvmkeelqreaeeKLTLMLL 772
Cdd:pfam05483 200 EELRVQAEN--ARLEMHFKLKEDHEKIQH-LEEEYKKEINDKEKQVSLLLIQITEKENKMK------------DLTFLLE 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 773 ELREKAES-EKQTIINKFELREAEMRQlqDQQAAQILDLERSLTEQQGRLQQLEQDLTSDDALHCSQCgrEPPTAQDGEL 851
Cdd:pfam05483 265 ESRDKANQlEEKTKLQDENLKELIEKK--DHLTKELEDIKMSLQRSMSTQKALEEDLQIATKTICQLT--EEKEAQMEEL 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 852 AALHVKEDCALQLMLARSRFLEERkeitekFSAEQDAFlqEAQEQHARELQLLQERHQQQLLSVTaELEARHQAALGELT 931
Cdd:pfam05483 341 NKAKAAHSFVVTEFEATTCSLEEL------LRTEQQRL--EKNEDQLKIITMELQKKSSELEEMT-KFKNNKEVELEELK 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 932 ASLESKQGALLAAR-----VAELQTKHAADLGALETRHlSSLDSLEsCYLSEFQTIREEHRQALELLRADFEEQLWKKDS 1006
Cdd:pfam05483 412 KILAEDEKLLDEKKqfekiAEELKGKEQELIFLLQARE-KEIHDLE-IQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIE 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1007 L--HQTILTQELEKLKRKHEGELQSVRDHlrtevSTELAGTVAHELQGVHQGEFGSEKKTALHEKEETLRLQSAQAQP-- 1082
Cdd:pfam05483 490 LtaHCDKLLLENKELTQEASDMTLELKKH-----QEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDev 564
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 81295809 1083 -----FHQEEKESLSLQLQKKNHQVQ-------QLKDQVLSLSHEIEECRSELEVLQQRRERENRE 1136
Cdd:pfam05483 565 kckldKSEENARSIEYEVLKKEKQMKilenkcnNLKKQIENKNKNIEELHQENKALKKKGSAENKQ 630
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
2637-3028 |
7.91e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.14 E-value: 7.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2637 LRSMLsskENELKAALQELESEQGKGRALQSQLEEEQLRHLQRESQSAKALEELRASLETQRAQSSRLCVALKHEQTAKD 2716
Cdd:COG4717 43 IRAML---LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELE 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2717 NLQKELRIEHSRCEalLAQERSQLSELQKDLAAEKSRTLELSEALRHERLLTEQLSQRTQE--ACVHQDTQAHHALLQKL 2794
Cdd:COG4717 120 KLEKLLQLLPLYQE--LEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEEleELLEQLSLATEEELQDL 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2795 KEEKSRVVDLQAMLEKVQQQALHSQQQLEAEAQKHCEALRREKE------------------------------------ 2838
Cdd:COG4717 198 AEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALeerlkearlllliaaallallglggsllsliltiag 277
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2839 ---VSATLKSTVEALHTQKRELRCSLEREREKPAWLQAELEQSHPRLKEQEGRKAARRSAEARQSPAAAEQWRKWQRDKE 2915
Cdd:COG4717 278 vlfLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAE 357
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2916 KLRElELQRQRDLHKIKQLQQTVrDLESKDEVpgsrlhlgsarRAAGSDADHLREQQRELEAMRQRLLSAARLLTSFTSQ 2995
Cdd:COG4717 358 ELEE-ELQLEELEQEIAALLAEA-GVEDEEEL-----------RAALEQAEEYQELKEELEELEEQLEELLGELEELLEA 424
|
410 420 430
....*....|....*....|....*....|...
gi 81295809 2996 AVDRTVNDWTSSNEKAVMSLLHTLEELKSDLSR 3028
Cdd:COG4717 425 LDEEELEEELEELEEELEELEEELEELREELAE 457
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
2487-2987 |
7.96e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 45.42 E-value: 7.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2487 LLERLEKIIREQGDLQEKSLEHLRLpdRSSLLSEIQALRAQLRMTHLqNQEKLQHLRTALTSAEARGSQQEHQLRRQVEL 2566
Cdd:PRK02224 263 LRETIAETEREREELAEEVRDLRER--LEELEEERDDLLAEAGLDDA-DAEAVEARREELEDRDEELRDRLEECRVAAQA 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2567 LAYKVEQEKCIAGDLQKTLSEEQEKANSVQKLLAAEQTVVRDLKSDLCESRQKSEQLSRS----------LCEVQQEVLQ 2636
Cdd:PRK02224 340 HNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERfgdapvdlgnAEDFLEELRE 419
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2637 LRSMLSSKENELKAALQELESEQGKGRALQSQLEEEQLRHLQRESQSAKALEELRASLETQRAQSSrlcvALKHEQTAKD 2716
Cdd:PRK02224 420 ERDELREREAELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELE----DLEEEVEEVE 495
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2717 NlqkelriEHSRCEALLAQERsQLSELQKDLAAEKSRTLELSEALRHERLLTEQLSQRTQEacVHQDTQAHHALLQKLKE 2796
Cdd:PRK02224 496 E-------RLERAEDLVEAED-RIERLEERREDLEELIAERRETIEEKRERAEELRERAAE--LEAEAEEKREAAAEAEE 565
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2797 EKSRVVDLQAMLEKVQqqalhsqqqleAEAQKHCEALRREKEVSATLKstvealhtqkrELRCSLEREREKPAWLQAELE 2876
Cdd:PRK02224 566 EAEEAREEVAELNSKL-----------AELKERIESLERIRTLLAAIA-----------DAEDEIERLREKREALAELND 623
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2877 QSHPRLKEQEGRKA-------ARRSAEARQSPAAAEQWRkwQRDKEKLRELELQRQRDLHKIKQLQQTVRDLES-KDEvp 2948
Cdd:PRK02224 624 ERRERLAEKRERKReleaefdEARIEEAREDKERAEEYL--EQVEEKLDELREERDDLQAEIGAVENELEELEElRER-- 699
|
490 500 510
....*....|....*....|....*....|....*....
gi 81295809 2949 gsRLHLGSARRAAGSdadhLREQQRELEAMRQRLLSAAR 2987
Cdd:PRK02224 700 --REALENRVEALEA----LYDEAEELESMYGDLRAELR 732
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
1801-1898 |
8.72e-04 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 44.57 E-value: 8.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1801 ALSRLLAdQERRHSQALEALQQRLQGAEEAAELQLAELERNVALREAEVEDMASRIQEFEAALKAKEATIAERNLEIDAL 1880
Cdd:PRK09039 64 ELADLLS-LERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELL 142
|
90
....*....|....*...
gi 81295809 1881 NQRKAAHSAELEAVLLAL 1898
Cdd:PRK09039 143 NQQIAALRRQLAALEAAL 160
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
2462-2773 |
8.89e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 45.11 E-value: 8.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2462 EKEQEMQGVELQPRLSGSDLGGHSSLlERLEKIIREQGDL---QEKSLEHLRLPDRSSLLSEIQALRAQLRMTHLQNQEK 2538
Cdd:pfam17380 304 EKEEKAREVERRRKLEEAEKARQAEM-DRQAAIYAEQERMameRERELERIRQEERKRELERIRQEEIAMEISRMRELER 382
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2539 LQHLRtaltSAEARGSQQEHQLRRQVELLAYKVEQEKCIAGDLQKTLSEEQEKANSVQkLLAAEQTVVRDLKsdlcesRQ 2618
Cdd:pfam17380 383 LQMER----QQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQRE-VRRLEEERAREME------RV 451
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2619 KSEQLSRslcevQQEVLQLRSmlssKENELKAALQELESEQGKgralQSQLEEEQLRHLQREsqsakaLEELRASLETQR 2698
Cdd:pfam17380 452 RLEEQER-----QQQVERLRQ----QEEERKRKKLELEKEKRD----RKRAEEQRRKILEKE------LEERKQAMIEEE 512
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 81295809 2699 AQSSRLCVALKHEQTAKDNLQKELRIEHSRCEALLAQERSQLSELQKDLAAEKSRTlelsEALRHERLLTEQLSQ 2773
Cdd:pfam17380 513 RKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRL----EAMEREREMMRQIVE 583
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
2459-2703 |
8.96e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 45.52 E-value: 8.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2459 EAFEKEQEMQGVElQPRLSGSDLGGHSSLLERLEKIIREQGDLQEKSLEHLRLPDRSSLLSEIQAlraQLRMTHLQNQEK 2538
Cdd:PTZ00121 1555 EELKKAEEKKKAE-EAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEA---KIKAEELKKAEE 1630
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2539 LQHLRTALTSAEARGSQQEHQLRRQVELLAYKVEQ-------EKCIAGDLQKTLSEEQEKANSVQKlLAAEQTVVRDLKS 2611
Cdd:PTZ00121 1631 EKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEeakkaeeDKKKAEEAKKAEEDEKKAAEALKK-EAEEAKKAEELKK 1709
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2612 DLCESRQKSEQLSRSLCEVQQEVLQLRsmlsSKENELKAALQELESEQG-KGRALQSQLEEEQLRHLQRESQSAKALEEL 2690
Cdd:PTZ00121 1710 KEAEEKKKAEELKKAEEENKIKAEEAK----KEAEEDKKKAEEAKKDEEeKKKIAHLKKEEEKKAEEIRKEKEAVIEEEL 1785
|
250
....*....|...
gi 81295809 2691 RASLETQRAQSSR 2703
Cdd:PTZ00121 1786 DEEDEKRRMEVDK 1798
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
214-746 |
9.17e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 45.34 E-value: 9.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 214 ECEQECELAITDLESG-REDEAGLHQSQAV--HGLELEALRLSLSNMHTAQLELTQAN-------LQKEKETALTELREM 283
Cdd:TIGR00618 304 QIEQQAQRIHTELQSKmRSRAKLLMKRAAHvkQQSSIEEQRRLLQTLHSQEIHIRDAHevatsirEISCQQHTLTQHIHT 383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 284 LNSRRAQELALLQSRQQHELELLREQH---AREKEEVVLRCGQEAAELKEKLQSEMEKNAQIVKTLKEDWESEKDLCLEN 360
Cdd:TIGR00618 384 LQQQKTTLTQKLQSLCKELDILQREQAtidTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQE 463
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 361 LRKELSAKHQSEmEDLQNQFQKElAEQRAELEKIFQDKNQAERALRNLESHHQAAIEKLreDLQSEHGRCLEDLEFKFKE 440
Cdd:TIGR00618 464 SAQSLKEREQQL-QTKEQIHLQE-TRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDI--DNPGPLTRRMQRGEQTYAQ 539
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 441 sekekqlelenLQASYEDLKAQSQEEIRRLWSQLDSARTSRQELSELHEQLLARTSRVEDLEQLKQR------------- 507
Cdd:TIGR00618 540 -----------LETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRlqdlteklseaed 608
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 508 ----------EKTQHESELEQLRIY---FEKKLRDAEKT-YQEDLTLLQQRLQGAREDALLDSVEVGLSCVGLEEKPEKG 573
Cdd:TIGR00618 609 mlaceqhallRKLQPEQDLQDVRLHlqqCSQELALKLTAlHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSE 688
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 574 RKDHVDELEPERHKESLPRFQAELEESHRHQLEALESPLC-----IQHEGHVSDRCCVETSALGHEW---RLEPSEGHSQ 645
Cdd:TIGR00618 689 KEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSslgsdLAAREDALNQSLKELMHQARTVlkaRTEAHFNNNE 768
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 646 ELPWVHLQGVQDGDLEADTERAARVL-GLETEHKVQLSLLQTELKEEIELLKIENRNLYGKLQHETRLKDDLEKVKHNLI 724
Cdd:TIGR00618 769 EVTAALQTGAELSHLAAEIQFFNRLReEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEIT 848
|
570 580
....*....|....*....|..
gi 81295809 725 EDHQKELNNAKQKTELMKQEFQ 746
Cdd:TIGR00618 849 HQLLKYEECSKQLAQLTQEQAK 870
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
314-828 |
9.60e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.05 E-value: 9.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 314 KEEVVLRCGQEAAELKEKLQSEMEKNAQIVKTLKEdwesekdlcLENLRKELSakhqsEMEDLQNqfqkELAEQRAELEK 393
Cdd:PRK03918 188 TENIEELIKEKEKELEEVLREINEISSELPELREE---------LEKLEKEVK-----ELEELKE----EIEELEKELES 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 394 IFQDKNQAERALRNLESHHQAAIEKLRE------DLQSEHGRCLEDLEF-KFKESEKEKQLELENLQASYEDLKAQSQEE 466
Cdd:PRK03918 250 LEGSKRKLEEKIRELEERIEELKKEIEEleekvkELKELKEKAEEYIKLsEFYEEYLDELREIEKRLSRLEEEINGIEER 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 467 IRRLWSQLDSARTSRQELSELHEQLLARTSRVEDLEQLKQREKtqhesELEQLRiyfeKKLRDAEKtyqEDLTLLQQRLQ 546
Cdd:PRK03918 330 IKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKE-----ELERLK----KRLTGLTP---EKLEKELEELE 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 547 GAREDALLDSVEVGLSCVGLEEKpEKGRKDHVDELEPERHKesLPRFQAELEESHRHQL--------EALESPL--CIQH 616
Cdd:PRK03918 398 KAKEEIEEEISKITARIGELKKE-IKELKKAIEELKKAKGK--CPVCGRELTEEHRKELleeytaelKRIEKELkeIEEK 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 617 EGHVSDRCCVETSALGHEWRLEPSEGHSQELPWVH--LQGVQDGDLEADTERAARVLGLETEHKVQLSLLQTELkEEIEL 694
Cdd:PRK03918 475 ERKLRKELRELEKVLKKESELIKLKELAEQLKELEekLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKEL-EKLEE 553
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 695 LKIENRNLYGKLQHETRLKDDLEKVKHNLIEDHQKELNNAKQKTELM----------KQEFQRKETDWKVMKEELQrEAE 764
Cdd:PRK03918 554 LKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFyneylelkdaEKELEREEKELKKLEEELD-KAF 632
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 81295809 765 EKLTLMLLELREKAE--SEKQTIINKFELREAEMRQLQDQQA-----AQILDLERSLTEQQGRLQQLEQDL 828
Cdd:PRK03918 633 EELAETEKRLEELRKelEELEKKYSEEEYEELREEYLELSRElaglrAELEELEKRREEIKKTLEKLKEEL 703
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
390-1160 |
9.76e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 45.04 E-value: 9.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 390 ELEKIFQDKNQAERALRNLEShhqaaIEKLREDLQSEHGRCleDLEFKFKESEKEKQLELENLQASYEDLKAQSQEEIRR 469
Cdd:TIGR00606 170 ALKQKFDEIFSATRYIKALET-----LRQVRQTQGQKVQEH--QMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKS 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 470 LWSQLDSARTSRQELSELHEQLLARTSRVEDLEQLK-QREKTQHESELEQLRIYF--EKKLRDAE-------KTYQEDLT 539
Cdd:TIGR00606 243 YENELDPLKNRLKEIEHNLSKIMKLDNEIKALKSRKkQMEKDNSELELKMEKVFQgtDEQLNDLYhnhqrtvREKERELV 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 540 LLQQRLQGAREDALLDS-------VEVGLSCVGLEEKPEKGRKDHVDELEPERHKE-----SLPRFQAELEESHRHQLEA 607
Cdd:TIGR00606 323 DCQRELEKLNKERRLLNqektellVEQGRLQLQADRHQEHIRARDSLIQSLATRLEldgfeRGPFSERQIKNFHTLVIER 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 608 LE------SPLCIQHEGHVS------DRCCVETSALGHEWRLEPS--EGHSQELPWVHLQGVQ-----DGDLEADTE--R 666
Cdd:TIGR00606 403 QEdeaktaAQLCADLQSKERlkqeqaDEIRDEKKGLGRTIELKKEilEKKQEELKFVIKELQQlegssDRILELDQElrK 482
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 667 AARVLGLETEHkvqlSLLQTELKEEIEL----------LKIENRNLYGKLQHETRLKDDLEKVKHNLIEDHQKELNNAKQ 736
Cdd:TIGR00606 483 AERELSKAEKN----SLTETLKKEVKSLqnekadldrkLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRH 558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 737 KTELMKQ----EFQRKETDWKVMKEELQREAEEKLTLMLLELrEKAESEKQTIINKFELREAEMRQLQDQ--QAAQILDL 810
Cdd:TIGR00606 559 SDELTSLlgyfPNKKQLEDWLHSKSKEINQTRDRLAKLNKEL-ASLEQNKNHINNELESKEEQLSSYEDKlfDVCGSQDE 637
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 811 ERSLTEQQGRLQQLEQDLTSDDAlhcsqcgrePPTAQDGELAALHVKEDCALQLMlarSRFLEERKEITEKFSAEQDAFL 890
Cdd:TIGR00606 638 ESDLERLKEEIEKSSKQRAMLAG---------ATAVYSQFITQLTDENQSCCPVC---QRVFQTEAELQEFISDLQSKLR 705
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 891 QEAQEQHARELQLLQERHQQQLLSVTAELEA----RHQAALGELTASLESkqgalLAARVAELQTKHAADLGALETRhLS 966
Cdd:TIGR00606 706 LAPDKLKSTESELKKKEKRRDEMLGLAPGRQsiidLKEKEIPELRNKLQK-----VNRDIQRLKNDIEEQETLLGTI-MP 779
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 967 SLDSLESCYLSefQTIREEHRQALELLRADFEEQLWKKDSLHQTILTQELEKLKRKHEGELQSVRDHLrtevstELAGTV 1046
Cdd:TIGR00606 780 EEESAKVCLTD--VTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKI------ELNRKL 851
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1047 AHELQgvHQGEFGSEKKTALHEKEETLRLQSAQAQPFhQEEKESLSLQLQKKNHQVQQLKDQVLSLSHEIEECRSELEVL 1126
Cdd:TIGR00606 852 IQDQQ--EQIQHLKSKTNELKSEKLQIGTNLQRRQQF-EEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEEL 928
|
810 820 830
....*....|....*....|....*....|....
gi 81295809 1127 QQRRERENREGANLLSMLKADVNLSHSERGALQD 1160
Cdd:TIGR00606 929 ISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIEN 962
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
1270-1752 |
1.13e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 44.71 E-value: 1.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1270 LMEMALDSSRQLEEARQIHSRFEKEFsfkNEETAQVVRKHQELLECLKEESAAKAELALELHKTQGTLEGFKVETADLKE 1349
Cdd:pfam05483 262 LLEESRDKANQLEEKTKLQDENLKEL---IEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQIATKTICQLTEEKEAQME 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1350 VLAGKEDSEHRLVLELESlrrqlqQAAQEQAALREECTRLwsrgeatatdaEAREAALRKEVEDLTKEQSETRKQAE--K 1427
Cdd:pfam05483 339 ELNKAKAAHSFVVTEFEA------TTCSLEELLRTEQQRL-----------EKNEDQLKIITMELQKKSSELEEMTKfkN 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1428 DRSALLSQMKILESELEEQLSQHRGCAKQAEAVTALEQQVASLDKHLRNQRQFMDEQAAEREHEREEFQQEIQRLEGQLR 1507
Cdd:pfam05483 402 NKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELE 481
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1508 QAAKPQPWGPRDSQQAPLDGEvELLQqklrEKLDEFNELAIQKESADRQVLMQE---EEIKRLEEMNINIRKKVAQLQEE 1584
Cdd:pfam05483 482 KEKLKNIELTAHCDKLLLENK-ELTQ----EASDMTLELKKHQEDIINCKKQEErmlKQIENLEEKEMNLRDELESVREE 556
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1585 VEKQKNIVKgLEQDKEVLKKQQMSSLLLASTLQSTLDAGRCPEPPSGSPPEGPEI-QLEVTQRALLRR---ESEVLDLKE 1660
Cdd:pfam05483 557 FIQKGDEVK-CKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIeELHQENKALKKKgsaENKQLNAYE 635
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1661 -QLEKMKGDLESKNEEILHLnlkldMQNSQTAVSLRELEEENTslkviytrSSEIEELKATIENLQENQKRLQKEKAEEI 1739
Cdd:pfam05483 636 iKVNKLELELASAKQKFEEI-----IDNYQKEIEDKKISEEKL--------LEEVEKAKAIADEAVKLQKEIDKRCQHKI 702
|
490
....*....|...
gi 81295809 1740 EQLHEVIEKLQHE 1752
Cdd:pfam05483 703 AEMVALMEKHKHQ 715
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
724-941 |
1.23e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 44.73 E-value: 1.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 724 IEDHQKELNNAKQ--KTELMKQEFQRKEtdwkvmKEELQREAEEKLTLMLLELREKAESEKQTIIN-------------- 787
Cdd:pfam17380 277 IVQHQKAVSERQQqeKFEKMEQERLRQE------KEEKAREVERRRKLEEAEKARQAEMDRQAAIYaeqermamererel 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 788 ---KFELREAEMRQLQDQQAA----QILDLERSLTEQQGRLQQLEQDLTSDDALHCSQCGRE-PPTAQDGELAALHVKED 859
Cdd:pfam17380 351 eriRQEERKRELERIRQEEIAmeisRMRELERLQMERQQKNERVRQELEAARKVKILEEERQrKIQQQKVEMEQIRAEQE 430
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 860 CALQLML-----ARSRFLEERKEITEKFSAEQDAFLQEAQEQHARELQLLQERHQQQLLS------VTAELEARHQAALG 928
Cdd:pfam17380 431 EARQREVrrleeERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEeqrrkiLEKELEERKQAMIE 510
|
250
....*....|....*....
gi 81295809 929 E------LTASLESKQGAL 941
Cdd:pfam17380 511 EerkrklLEKEMEERQKAI 529
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
2488-2978 |
1.28e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 44.67 E-value: 1.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2488 LERLEKIIREQGDLQEKSLEHLRLpdrSSLLSEIQALRAQLRMTHLQNQEKLQHLRTALTSAEARGSQQEHQLRRQVELL 2567
Cdd:PRK03918 275 IEELEEKVKELKELKEKAEEYIKL---SEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELE 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2568 AYKVEQEKCIagDLQKTLSEEQEKANSVQKLLAAEQtvVRDLKSDLCESRQKSEQLSRSLCEVQQEVLQLRsmlsSKENE 2647
Cdd:PRK03918 352 KRLEELEERH--ELYEEAKAKKEELERLKKRLTGLT--PEKLEKELEELEKAKEEIEEEISKITARIGELK----KEIKE 423
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2648 LKAALQELESEQGK----GRALQSQLEEEQLRHLQRE-SQSAKALEELRASLETQRAQSSRLCVALKHEqtakdnlqKEL 2722
Cdd:PRK03918 424 LKKAIEELKKAKGKcpvcGRELTEEHRKELLEEYTAElKRIEKELKEIEEKERKLRKELRELEKVLKKE--------SEL 495
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2723 RIEHSRCEallaqersQLSELQKDLaaEKSRTLELSEALRHERLLTEQLSQRTQEACVHQDTqahhalLQKLKEEKSRVV 2802
Cdd:PRK03918 496 IKLKELAE--------QLKELEEKL--KKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKE------LEKLEELKKKLA 559
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2803 DLQAMLEKVQQQALHSQQQLEAEAQKHCEALRRE-KEVSATLKSTVEALHTQKRelrcsLEREREKPAWLQAELEQSHPR 2881
Cdd:PRK03918 560 ELEKKLDELEEELAELLKELEELGFESVEELEERlKELEPFYNEYLELKDAEKE-----LEREEKELKKLEEELDKAFEE 634
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2882 LKEQEGR-KAARRSAEARQSPAAAEQWRKWQRDKEKLRE----LELQRQRDLHKIKQLQQTVRDL-ESKDEVPGSRLHLG 2955
Cdd:PRK03918 635 LAETEKRlEELRKELEELEKKYSEEEYEELREEYLELSRelagLRAELEELEKRREEIKKTLEKLkEELEEREKAKKELE 714
|
490 500
....*....|....*....|...
gi 81295809 2956 SARRAAgSDADHLREQQRELEAM 2978
Cdd:PRK03918 715 KLEKAL-ERVEELREKVKKYKAL 736
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1642-1756 |
1.28e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 44.38 E-value: 1.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1642 EVTQRALLRRESEVLDLKEQLEKmkgDLESKNEEILHLNLKLDMQNSQTAVSLRELEEENTSL----KVIYTRSSEIEEL 1717
Cdd:PRK12704 53 AIKKEALLEAKEEIHKLRNEFEK---ELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELekkeKELEQKQQELEKK 129
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 81295809 1718 KATIENLQENQKR-------LQKEKAEEIeQLHEVIEKLQHELSLM 1756
Cdd:PRK12704 130 EEELEELIEEQLQelerisgLTAEEAKEI-LLEKVEEEARHEAAVL 174
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
702-833 |
1.35e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 44.38 E-value: 1.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 702 LYGKLQHETRLKDDLEKVKHnLIEDHQKELNNAKQKTEL-MKQEFQRK----ETDWKVMKEELQReAEEKLtlmllELRE 776
Cdd:PRK12704 23 FVRKKIAEAKIKEAEEEAKR-ILEEAKKEAEAIKKEALLeAKEEIHKLrnefEKELRERRNELQK-LEKRL-----LQKE 95
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 81295809 777 KAESEKQTIINK----FELREAEMRQLQDQQAAQILDLERSLTEQQGRLQQLEQdLTSDDA 833
Cdd:PRK12704 96 ENLDRKLELLEKreeeLEKKEKELEQKQQELEKKEEELEELIEEQLQELERISG-LTAEEA 155
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1411-1945 |
1.40e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.37 E-value: 1.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1411 VEDLTKEQSETRKQAEKDRSALLSQMKILESELEEQLSQHRGCAKQAEAVTALEQQVASLD---KHLRNQRQFMD--EQA 1485
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEaelEELREELEKLEklLQL 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1486 AEREHEREEFQQEIQRLEGQLRQA-AKPQPWGPRDSQQAPLDGEVELLQQKLREKLDEFNELAIQK-ESADRQVLMQEEE 1563
Cdd:COG4717 128 LPLYQELEALEAELAELPERLEELeERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEElQDLAEELEELQQR 207
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1564 IKRLEEMNINIRKKVAQLQEEVEKQKNIVKGLEQDKEVlkKQQMSSLLLASTLQSTLDAGRCPEPPSGSPPEGPEIQLEV 1643
Cdd:COG4717 208 LAELEEELEEAQEELEELEEELEQLENELEAAALEERL--KEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGL 285
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1644 TQRALLRRESEVLDLKEQLEKMKGDLESKNeeilhlnlkLDMQNSQTAVSLRELEEENTSlkviytrsSEIEELKATIEN 1723
Cdd:COG4717 286 LALLFLLLAREKASLGKEAEELQALPALEE---------LEEEELEELLAALGLPPDLSP--------EELLELLDRIEE 348
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1724 LQENQKRLQKEKAE-EIEQLHEVIEKLQHElslmgpvvhevsdsqagslqsellcsqaggprgqalqgeleAALEAKEAL 1802
Cdd:COG4717 349 LQELLREAEELEEElQLEELEQEIAALLAE-----------------------------------------AGVEDEEEL 387
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1803 SRLLADQERRhsqalEALQQRLQGAEEaaELQLAELERNVALREAEVEDMASRIQEFEAALKAKEAtiaernlEIDALNQ 1882
Cdd:COG4717 388 RAALEQAEEY-----QELKEELEELEE--QLEELLGELEELLEALDEEELEEELEELEEELEELEE-------ELEELRE 453
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 81295809 1883 RkaahsaeleavllaLARIRRALEQqpLAAGAappELQWLRAQCARLSRQLQVLHQRFLRCQV 1945
Cdd:COG4717 454 E--------------LAELEAELEQ--LEEDG---ELAELLQELEELKAELRELAEEWAALKL 497
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1395-1609 |
1.43e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.98 E-value: 1.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1395 ATATDAEAREAALRKEVEDLTKEQSETRK---QAEKDRSALLSQMKILE---SELEEQLSQHRGCAKQAEA-VTALEQQV 1467
Cdd:COG4942 13 LAAAAQADAAAEAEAELEQLQQEIAELEKelaALKKEEKALLKQLAALErriAALARRIRALEQELAALEAeLAELEKEI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1468 ASLDKHLRNQRQFMDEQAAEREHEREE-----------FQQEIQRLE--GQLRQAAKPQPWGPRDSQQApLDGEVELLQQ 1534
Cdd:COG4942 93 AELRAELEAQKEELAELLRALYRLGRQpplalllspedFLDAVRRLQylKYLAPARREQAEELRADLAE-LAALRAELEA 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 81295809 1535 KLREKLDEFNELAIQKESADRQVLMQEEEIKRLEEMNINIRKKVAQLQEEVEKQKNIVKGLEQDKEVLKKQQMSS 1609
Cdd:COG4942 172 ERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
1262-1894 |
1.53e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 44.44 E-value: 1.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1262 SLSLAVDGLMEMALDSSRQLEEARQIHSRFEKEFSFKNEETAQV--------------VRKHQELLECLKEESAAKAELA 1327
Cdd:pfam12128 259 RLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKrdelngelsaadaaVAKDRSELEALEDQHGAFLDAD 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1328 LE-LHKTQGTLEGFKVETADLKEVLAGKEDSEHRLVLELESLR--------RQLQQAAQEQAALREECTRLwsrGEATAT 1398
Cdd:pfam12128 339 IEtAAADQEQLPSWQSELENLEERLKALTGKHQDVTAKYNRRRskikeqnnRDIAGIKDKLAKIREARDRQ---LAVAED 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1399 DAEAREAALRKEVEDLTKEQSETRKQAEKDRSAL---LSQMKILESELEEQLSQHRGCAKQAEAVTALEQQVASLDKHLR 1475
Cdd:pfam12128 416 DLQALESELREQLEAGKLEFNEEEYRLKSRLGELklrLNQATATPELLLQLENFDERIERAREEQEAANAEVERLQSELR 495
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1476 NQRQFMDEQAAEREHEREEFQQEIQRLEgQLRQAAKPQPWGPRD--SQQAPL----DGEVELLQQKLREKLD-EFNELAI 1548
Cdd:pfam12128 496 QARKRRDQASEALRQASRRLEERQSALD-ELELQLFPQAGTLLHflRKEAPDweqsIGKVISPELLHRTDLDpEVWDGSV 574
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1549 QKESADRQVLMqeeeikRLEEMNINirkKVAQLQEEVEKQKNIVKGLEQDKEVLKKQQMSSLLLASTLQSTLDAGRCPEP 1628
Cdd:pfam12128 575 GGELNLYGVKL------DLKRIDVP---EWAASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETFAR 645
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1629 PSGSPPEGPEIQLEVTQRALLRRESEVL-DLKEQLEKMKGDLEsKNEEILHLNLKLDMQNSQTAVSLRELEEENTSLKVI 1707
Cdd:pfam12128 646 TALKNARLDLRRLFDEKQSEKDKKNKALaERKDSANERLNSLE-AQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVE 724
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1708 YTRSSEIEELKATIENLQENQKRLQKEKAEEIEQlhevieklqhELSLMGPVVHEVSDSQAGSLQSELLCSQAGGPRGQA 1787
Cdd:pfam12128 725 GALDAQLALLKAAIAARRSGAKAELKALETWYKR----------DLASLGVDPDVIAKLKREIRTLERKIERIAVRRQEV 794
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1788 LQGEL---EAALEAKEALSRLLADQERrhsqALEALQQRLQGAEEAAELQLAELERNV-ALREAEVE---------DMAS 1854
Cdd:pfam12128 795 LRYFDwyqETWLQRRPRLATQLSNIER----AISELQQQLARLIADTKLRRAKLEMERkASEKQQVRlsenlrglrCEMS 870
|
650 660 670 680
....*....|....*....|....*....|....*....|..
gi 81295809 1855 RIQEFEAALKAKEA--TIAERNleiDALNQRKAAHSAELEAV 1894
Cdd:pfam12128 871 KLATLKEDANSEQAqgSIGERL---AQLEDLKLKRDYLSESV 909
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
2670-2877 |
1.54e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.52 E-value: 1.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2670 EEEQLRHLQRESQSAKALEELRASLETQRAQSSRLcvALKHEQTAKDNLQKELRiehsRCEALLAQERSQLSELQKDLAA 2749
Cdd:COG4913 247 AREQIELLEPIRELAERYAAARERLAELEYLRAAL--RLWFAQRRLELLEAELE----ELRAELARLEAELERLEARLDA 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2750 EKSRTLELSEALR---HERL--LTEQLSQRTQEacvhqdtqahhallqkLKEEKSRVVDLQAMLEKVQQQALHSQQQLEA 2824
Cdd:COG4913 321 LREELDELEAQIRgngGDRLeqLEREIERLERE----------------LEERERRRARLEALLAALGLPLPASAEEFAA 384
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 81295809 2825 EAQKHCEALRREKEVSATLKSTVEALHTQKRELRcsleREREKpawLQAELEQ 2877
Cdd:COG4913 385 LRAEAAALLEALEEELEALEEALAEAEAALRDLR----RELRE---LEAEIAS 430
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
1531-1753 |
1.55e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 44.23 E-value: 1.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1531 LLQQKLREKLDEFNELAIQKESADRQVLMQEEEIKRLEEMN-INIRKKVAQLQEEVEKQKNIVKGLEQDKEVLKKQQMSS 1609
Cdd:PHA02562 171 LNKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNgENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDI 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1610 LLLASTLQStLDAGRCPEPPSGSPPEGPEIQLE-------VTQrALLRRESEVLDLKEQLEKMKGDLESKNEEILHLNLK 1682
Cdd:PHA02562 251 EDPSAALNK-LNTAAAKIKSKIEQFQKVIKMYEkggvcptCTQ-QISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEI 328
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 81295809 1683 LDMQNSQTaVSLRELEeentslkviytrsSEIEELKATIENLQENQKRLQKekaeEIEQLH-------EVIEKLQHEL 1753
Cdd:PHA02562 329 MDEFNEQS-KKLLELK-------------NKISTNKQSLITLVDKAKKVKA----AIEELQaefvdnaEELAKLQDEL 388
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
1735-1883 |
1.63e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 43.80 E-value: 1.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1735 KAEEIEQLHEVIEKLQHELSLmgpvvhevSDSQAGSLQSELlcsqaggprgqalqGELEAALEAKEALSRLLADQERRHS 1814
Cdd:PRK09039 51 KDSALDRLNSQIAELADLLSL--------ERQGNQDLQDSV--------------ANLRASLSAAEAERSRLQALLAELA 108
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 81295809 1815 QALEALQQRLQ--GAEEAAELQL-AELERNVALREAEVEDMASRIQEFEAALKAKEATIAERNLEIDALNQR 1883
Cdd:PRK09039 109 GAGAAAEGRAGelAQELDSEKQVsARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRR 180
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
2572-2793 |
1.77e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 44.13 E-value: 1.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2572 EQEKCIAGDLQKTLSEEQEKANSVQKLLAAEQTvVRDLKSDLCESRQKSEQLSRSLCEVQQEVL------QLRSMLSSKE 2645
Cdd:PRK11281 56 AEDKLVQQDLEQTLALLDKIDRQKEETEQLKQQ-LAQAPAKLRQAQAELEALKDDNDEETRETLstlslrQLESRLAQTL 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2646 NELKAALQELESEQGKGRALQSQLEEEQlrhlQRESQSAKALEELRASLETQRAQSSrlcvALKHEQtakdnlQKELRIE 2725
Cdd:PRK11281 135 DQLQNAQNDLAEYNSQLVSLQTQPERAQ----AALYANSQRLQQIRNLLKGGKVGGK----ALRPSQ------RVLLQAE 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2726 HSRCEALLAQER------SQLSEL---QKDLAAEKSRTLE-----LSEALRHERLlteQLSQRT-QEACVHQDTQA--HH 2788
Cdd:PRK11281 201 QALLNAQNDLQRkslegnTQLQDLlqkQRDYLTARIQRLEhqlqlLQEAINSKRL---TLSEKTvQEAQSQDEAARiqAN 277
|
....*
gi 81295809 2789 ALLQK 2793
Cdd:PRK11281 278 PLVAQ 282
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
2488-2986 |
1.93e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 44.19 E-value: 1.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2488 LERLEKIIREQGDLQEKSLEHLRLPDrssllsEIQALRAQLRMTHLQNQEKLQHLRTALtsAEARGSQQEHQLRRQVELL 2567
Cdd:TIGR00618 224 LEKELKHLREALQQTQQSHAYLTQKR------EAQEEQLKKQQLLKQLRARIEELRAQE--AVLEETQERINRARKAAPL 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2568 AYKVEQEKCIAGDLQKTLSEEQEKANSVQKLLAAEQTVVRDlksdlcesRQKSEQLSRSLCEVQQEVLQLRSmlsskene 2647
Cdd:TIGR00618 296 AAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQ--------QSSIEEQRRLLQTLHSQEIHIRD-------- 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2648 lkaalqelESEQGKGRALQSQLEEEQLRHLQRESQSAKALEELRASLETQRAQSSRLCVALKHEQTAKDNLQKELRIEHS 2727
Cdd:TIGR00618 360 --------AHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKK 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2728 RCEALLAQERSQLSELQKDLAAEKSRTLELSEALRHERLLTEQLSQRTQEACVHQDTQAHHALLQKLKEEKSRVVDLQAM 2807
Cdd:TIGR00618 432 QQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCI 511
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2808 LEKVQQQALHSQQQLeaeaQKHCEALRREKEVSATLKSTVEALHTQKRELRCSLEREREKPAWLQAELEQSHPRLKEqEG 2887
Cdd:TIGR00618 512 HPNPARQDIDNPGPL----TRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKE-DI 586
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2888 RKAARRSAEARQSPAAAEQWRKWQRDKEKLRELELQRQRDLHKIKQLQQTVRDLESKDEVPGSRLHLGSARRAAGSDADH 2967
Cdd:TIGR00618 587 PNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALS 666
|
490
....*....|....*....
gi 81295809 2968 LREQQRELEAMRQRLLSAA 2986
Cdd:TIGR00618 667 IRVLPKELLASRQLALQKM 685
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
213-486 |
2.15e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 44.13 E-value: 2.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 213 KECEQECELAITDLESGREDEAGLHQSQAvhglELEALRLSLSNMhTAQLELTQANLQKEKETALTELREMLNSRRAQEL 292
Cdd:PRK11281 52 KLLEAEDKLVQQDLEQTLALLDKIDRQKE----ETEQLKQQLAQA-PAKLRQAQAELEALKDDNDEETRETLSTLSLRQL 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 293 ALLQSRQQHELELLREQHAREKEEVVlrcGQEAAelKEKLQSEMEKNA----QIVKTLKEDWESEKDLCLEnLRKELSAk 368
Cdd:PRK11281 127 ESRLAQTLDQLQNAQNDLAEYNSQLV---SLQTQ--PERAQAALYANSqrlqQIRNLLKGGKVGGKALRPS-QRVLLQA- 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 369 hQSEMEDLQNQFQKELAEQRAELekifQDKNQAERALRNLeshHQAAIEKLREDLQSE-HGRCLEDLEFKFKESEKEKQL 447
Cdd:PRK11281 200 -EQALLNAQNDLQRKSLEGNTQL----QDLLQKQRDYLTA---RIQRLEHQLQLLQEAiNSKRLTLSEKTVQEAQSQDEA 271
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 81295809 448 -----------ELE-NLQAS------YEDLKAQSQEEIrRLWSQLDSARTSRQELSE 486
Cdd:PRK11281 272 ariqanplvaqELEiNLQLSqrllkaTEKLNTLTQQNL-RVKNWLDRLTQSERNIKE 327
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2671-2990 |
2.15e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 43.89 E-value: 2.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2671 EEQLRHLQRESQSAKALEELRASLEtqRAQSSRLCVALKHEQTAKDNLQKELRIEHSRCEALlaqeRSQLSELQKDLAAE 2750
Cdd:TIGR02168 199 ERQLKSLERQAEKAERYKELKAELR--ELELALLVLRLEELREELEELQEELKEAEEELEEL----TAELQELEEKLEEL 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2751 KSRTLELSEALRHERllteqlsqrtqeacvhqdtqahhALLQKLKEEKSRvvdlqamlekvqqqalhsqqqLEAEAQKHC 2830
Cdd:TIGR02168 273 RLEVSELEEEIEELQ-----------------------KELYALANEISR---------------------LEQQKQILR 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2831 EALRRekevsatLKSTVEALHTQKRELRCSLEREREKPAWLQAELEQSHPRLKEQEGRKAARRSAEARQSPAAAEQWRKW 2910
Cdd:TIGR02168 309 ERLAN-------LERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQL 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2911 QRDKEKLRELELQ-------RQRDLHKIKQLQQTVRDLESKDEVPGSRLHLGSARRAAGSDADH---LREQQRELEAMRQ 2980
Cdd:TIGR02168 382 ETLRSKVAQLELQiaslnneIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELeeeLEELQEELERLEE 461
|
330
....*....|
gi 81295809 2981 RLLSAARLLT 2990
Cdd:TIGR02168 462 ALEELREELE 471
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
2617-2778 |
2.30e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.75 E-value: 2.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2617 RQKSEQLSRSLCEVQQEVLQLRSMLSSKENELKA---------ALQELESEQGKGRALQSQLE--EEQLRHLQRESQSAK 2685
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDAlqerrealqRLAEYSWDEIDVASAEREIAelEAELERLDASSDDLA 688
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2686 ALEELRASLETQRAQSSRLCVALKHEQTAKDNLQKELRIEHSRCEALLAQERSQLSELQKDLAAEKSRTLELSEalrHER 2765
Cdd:COG4913 689 ALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDA---VER 765
|
170
....*....|...
gi 81295809 2766 LLTEQLSQRTQEA 2778
Cdd:COG4913 766 ELRENLEERIDAL 778
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1712-1904 |
2.47e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.22 E-value: 2.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1712 SEIEELKATIENLQENQKRLQKEKAE---EIEQLHEVIEKLQHELSLMGpvvHEVSDSQAgslqsellcsqaggpRGQAL 1788
Cdd:COG1579 17 SELDRLEHRLKELPAELAELEDELAAleaRLEAAKTELEDLEKEIKRLE---LEIEEVEA---------------RIKKY 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1789 QGELEAALEAKE--ALSRLLADQERRHSQaLEALQQRLQGAEEAAELQLAELERNVALREAEVEDMASRIQEFEAALKAk 1866
Cdd:COG1579 79 EEQLGNVRNNKEyeALQKEIESLKRRISD-LEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEA- 156
|
170 180 190
....*....|....*....|....*....|....*....
gi 81295809 1867 eatiaernlEIDALNQRKAAHSAELEAVLLAL-ARIRRA 1904
Cdd:COG1579 157 ---------ELEELEAEREELAAKIPPELLALyERIRKR 186
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
368-606 |
2.98e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.57 E-value: 2.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 368 KHQSEMEDLQNQFQKELAEQraelEKIFQDKNQAERAL------------RNLESHHQAAIEKLREDLQSEHGRCLEDLE 435
Cdd:pfam17380 279 QHQKAVSERQQQEKFEKMEQ----ERLRQEKEEKAREVerrrkleeaekaRQAEMDRQAAIYAEQERMAMERERELERIR 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 436 fkfkesEKEKQLELENLQASYEDLKAQSQEEIRRLwsqldsaRTSRQELSELHEQLLARTSRVEDLEQLKQREKTQHESE 515
Cdd:pfam17380 355 ------QEERKRELERIRQEEIAMEISRMRELERL-------QMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVE 421
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 516 LEQLRiyfekklRDAEKTYQEDLTLLQQRLQGAREDALLDSVEvglscvgLEEKPEKGRKDHVDELEPERHKESLPRFQA 595
Cdd:pfam17380 422 MEQIR-------AEQEEARQREVRRLEEERAREMERVRLEEQE-------RQQQVERLRQQEEERKRKKLELEKEKRDRK 487
|
250
....*....|.
gi 81295809 596 ELEESHRHQLE 606
Cdd:pfam17380 488 RAEEQRRKILE 498
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
373-828 |
3.68e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.22 E-value: 3.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 373 MEDLQNQFQKELAEQRAELEKIFQDKNqaERALRNLEshhqaAIEKLREDLQSEHGRCLEDLEFKFKESEKEKQLELENL 452
Cdd:COG4717 40 LAFIRAMLLERLEKEADELFKPQGRKP--ELNLKELK-----ELEEELKEAEEKEEEYAELQEELEELEEELEELEAELE 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 453 QASYEDLKAQSQEEIRRLWSQLDSARTSRQELSE----LHEQLLARTSRVEDLEQLKQrEKTQHESELEQLRIYFEKKLR 528
Cdd:COG4717 113 ELREELEKLEKLLQLLPLYQELEALEAELAELPErleeLEERLEELRELEEELEELEA-ELAELQEELEELLEQLSLATE 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 529 DAEKTYQEDLTLLQQRLQGAREDalldsvevglscvgLEEKpekgrkdhvdELEPERHKESLPRFQAELE-ESHRHQLEA 607
Cdd:COG4717 192 EELQDLAEELEELQQRLAELEEE--------------LEEA----------QEELEELEEELEQLENELEaAALEERLKE 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 608 LESPLCIQHEGHVsdrccvetsALGHEWRLEPSEGHSQELPWVHLQGV---------QDGDLEADTERAARVLGLETEHK 678
Cdd:COG4717 248 ARLLLLIAAALLA---------LLGLGGSLLSLILTIAGVLFLVLGLLallflllarEKASLGKEAEELQALPALEELEE 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 679 VQLSLLQTELKEEIELLKIENRNLYGKLQH----ETRLKDDLEKVKHNLIEDHQKEL---NNAKQKTEL-----MKQEFQ 746
Cdd:COG4717 319 EELEELLAALGLPPDLSPEELLELLDRIEElqelLREAEELEEELQLEELEQEIAALlaeAGVEDEEELraaleQAEEYQ 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 747 RKETDWKVMKEELQREAEEKLTLMLLELREKAESEKQTIINKFELREAEMRQLQDQQAAqiLDLERSLTEQQGRLQQLEQ 826
Cdd:COG4717 399 ELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAE--LEAELEQLEEDGELAELLQ 476
|
..
gi 81295809 827 DL 828
Cdd:COG4717 477 EL 478
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1658-1870 |
3.81e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.08 E-value: 3.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1658 LKEQLEKMKGDLESKNEEIL-----HLNLKLDMQNSQTAVSLRELEEENTSLKviytrsSEIEELKATIENLQENQKRLQ 1732
Cdd:COG3206 180 LEEQLPELRKELEEAEAALEefrqkNGLVDLSEEAKLLLQQLSELESQLAEAR------AELAEAEARLAALRAQLGSGP 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1733 KEKAE-----EIEQLHEVIEKLQHELSLMG-------PVVHEVsDSQAGSLQSELlcsqaggprgqalQGELEAALEAKE 1800
Cdd:COG3206 254 DALPEllqspVIQQLRAQLAELEAELAELSarytpnhPDVIAL-RAQIAALRAQL-------------QQEAQRILASLE 319
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1801 ALSRLLADQERRHSQALEALQQRLQGAEEAaELQLAELERNVALREAEVEDMASRIQEFEAALKAKEATI 1870
Cdd:COG3206 320 AELEALQAREASLQAQLAQLEARLAELPEL-EAELRRLEREVEVARELYESLLQRLEEARLAEALTVGNV 388
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
2599-2778 |
4.34e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.51 E-value: 4.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2599 LAAEQTVVRDLKSDLCESRQKSEQLSRSLCEVQQEVLQLRSMLSSKENELKAALQELESEQGKGRALQSQLeEEQLRHLQ 2678
Cdd:COG3883 18 IQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREEL-GERARALY 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2679 RESQSAKALEEL-----------RAS-LETQRAQSSRLCVALKHEQTAKDNLQKELRIEHSRCEALLAQERSQLSELQKD 2746
Cdd:COG3883 97 RSGGSVSYLDVLlgsesfsdfldRLSaLSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQ 176
|
170 180 190
....*....|....*....|....*....|..
gi 81295809 2747 LAAEKSRTLELSEALRHERLLTEQLSQRTQEA 2778
Cdd:COG3883 177 QAEQEALLAQLSAEEAAAEAQLAELEAELAAA 208
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
693-999 |
4.41e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.02 E-value: 4.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 693 ELLKIENR--NLYGKLQHETRLKDDLEkVKHNLIEDHQKELNNAKQktelmkqeFQRKETDWKVMKEELQREAEEKLtlm 770
Cdd:PRK04863 301 QLAAEQYRlvEMARELAELNEAESDLE-QDYQAASDHLNLVQTALR--------QQEKIERYQADLEELEERLEEQN--- 368
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 771 llELREKAESEKQTIINKFELREAEmrqlQDQQAAQILDLERSLTEQQGRLQQLEQDLTSDDALHcSQCGREPPTAQ--D 848
Cdd:PRK04863 369 --EVVEEADEQQEENEARAEAAEEE----VDELKSQLADYQQALDVQQTRAIQYQQAVQALERAK-QLCGLPDLTADnaE 441
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 849 GELAALHVKEDCALQLML-----------ARSRFlEERKEITEKFSAEQDAflQEAQEQhARELqLLQERHQQQLLSVTA 917
Cdd:PRK04863 442 DWLEEFQAKEQEATEELLsleqklsvaqaAHSQF-EQAYQLVRKIAGEVSR--SEAWDV-AREL-LRRLREQRHLAEQLQ 516
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 918 ELEARhqaaLGELTASLESKQGA--LL--AARVAELQTKHAADLGALETRHLSSLDSLEScYLSEFQTIREEHRQALELL 993
Cdd:PRK04863 517 QLRMR----LSELEQRLRQQQRAerLLaeFCKRLGKNLDDEDELEQLQEELEARLESLSE-SVSEARERRMALRQQLEQL 591
|
....*.
gi 81295809 994 RADFEE 999
Cdd:PRK04863 592 QARIQR 597
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
1530-1939 |
4.52e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 42.57 E-value: 4.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1530 ELLQQKLREKLDEFNELAIQKESADRQVLMQEEEIKRLEEmniNIRKKVAQLQEEVEKQKNIVKGLEQDKEVLKKQQMSS 1609
Cdd:pfam07888 30 ELLQNRLEECLQERAELLQAQEAANRQREKEKERYKRDRE---QWERQRRELESRVAELKEELRQSREKHEELEEKYKEL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1610 LLLASTLQSTLDAGRCPEPPSGSPPEGPEIQLEVTQRALLRRESEVLDLKEQLEKMKGDLesKNEEILHLNLKLDMQNSq 1689
Cdd:pfam07888 107 SASSEELSEEKDALLAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQR--KEEEAERKQLQAKLQQT- 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1690 tavslrelEEENTSLkviytrSSEIEELKAtienlqenqkrLQKEKAEEIEQLHEVIEKLQHELSlmgpvvhevsDSQAG 1769
Cdd:pfam07888 184 --------EEELRSL------SKEFQELRN-----------SLAQRDTQVLQLQDTITTLTQKLT----------TAHRK 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1770 SLQSELLCSQAggprgQALQGELEAALEAKEALSRLLAD--QERRHSQAlEALQQRLQgaeeAAELQLAELERNVALREA 1847
Cdd:pfam07888 229 EAENEALLEEL-----RSLQERLNASERKVEGLGEELSSmaAQRDRTQA-ELHQARLQ----AAQLTLQLADASLALREG 298
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1848 E-------------VEDMASRIQEFEAALKAKEATIAERNLEIDALnqrKAAHSAELEAVLLALARIRRALEQQPLAAGA 1914
Cdd:pfam07888 299 RarwaqeretlqqsAEADKDRIEKLSAELQRLEERLQEERMEREKL---EVELGREKDCNRVQLSESRRELQELKASLRV 375
|
410 420
....*....|....*....|....*
gi 81295809 1915 APPELQWLRAQCARLSRQLQVLHQR 1939
Cdd:pfam07888 376 AQKEKEQLQAEKQELLEYIRQLEQR 400
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1798-1956 |
4.59e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.70 E-value: 4.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1798 AKEALSRLLADQERRHSQALEALQQRLQGAE---EAAELQLAEL--ERNVALREAEVEDMASRIQEFEAALKAKEATIAE 1872
Cdd:COG3206 158 AEAYLEQNLELRREEARKALEFLEEQLPELRkelEEAEAALEEFrqKNGLVDLSEEAKLLLQQLSELESQLAEARAELAE 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1873 RNLEIDALNQRKAAH---------SAELEAVLLALARIRRALEQQPLAAGAAPPELQWLRAQCARLSRQLQVLHQRFLRC 1943
Cdd:COG3206 238 AEARLAALRAQLGSGpdalpellqSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILAS 317
|
170
....*....|....
gi 81295809 1944 -QVELDRRQARRAT 1956
Cdd:COG3206 318 lEAELEALQAREAS 331
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
260-830 |
4.75e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 43.03 E-value: 4.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 260 AQLELTQANLQkEKETALTELREMLNSR-RAQELALLQSRQQHELELLREQHAREKEEV---------------VLRCGQ 323
Cdd:TIGR00618 229 KHLREALQQTQ-QSHAYLTQKREAQEEQlKKQQLLKQLRARIEELRAQEAVLEETQERInrarkaaplaahikaVTQIEQ 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 324 EAAELKEKLQSEMEKNAQIVKTLKEDWESEKDlcLENLRKELSAKHQSEME-----DLQNQFQKELAEQRAELEKIFQDK 398
Cdd:TIGR00618 308 QAQRIHTELQSKMRSRAKLLMKRAAHVKQQSS--IEEQRRLLQTLHSQEIHirdahEVATSIREISCQQHTLTQHIHTLQ 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 399 NQAERALRNLESHHQaAIEKLREDLQSEHGRCLEDLEFKFKESEKEKQLELEnlQASYEDLKAQSQEEIRRLWSQLDSAR 478
Cdd:TIGR00618 386 QQKTTLTQKLQSLCK-ELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQ--QRYAELCAAAITCTAQCEKLEKIHLQ 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 479 TSRQELSELHEQLLARTSRVEDLEQLKQREKTQHESELEQLRIYFEKKLRDAEKTYQEDLTLLQQRLQGAREDALLDSVE 558
Cdd:TIGR00618 463 ESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLET 542
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 559 VGLSCVGLEEKPEKGRKDHVDELEPERHKESLprfQAELEESHRHQLEALESPLC-IQHEGHVSDRCCVETSALGHEWRL 637
Cdd:TIGR00618 543 SEEDVYHQLTSERKQRASLKEQMQEIQQSFSI---LTQCDNRSKEDIPNLQNITVrLQDLTEKLSEAEDMLACEQHALLR 619
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 638 EPSEGHSQELPWVHLQGVQDGDLEADTERAARVLGLETEHKVQLSLLQTELKEEielLKIENRNLYGKLQHE----TRLK 713
Cdd:TIGR00618 620 KLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKE---LLASRQLALQKMQSEkeqlTYWK 696
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 714 DDLEKVKHNLIEDHQKELNNAKQKTEL------MKQEFQRKETDWKVMKEELQREAEEKLT----------------LML 771
Cdd:TIGR00618 697 EMLAQCQTLLRELETHIEEYDREFNEIenasssLGSDLAAREDALNQSLKELMHQARTVLKarteahfnnneevtaaLQT 776
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*....
gi 81295809 772 LELREKAESEKQTIINKFELREAEMRQLQDQQAAQILDLERSLTEQQGRLQQLEQDLTS 830
Cdd:TIGR00618 777 GAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLS 835
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
2511-2837 |
4.75e-03 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 42.36 E-value: 4.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2511 LPDRSSLLSEIQALRAQLRMTHLQNQEKLQHLRTALTSAEARGSQQEHQLRRQVELLAykvEQEKCIAgDLQKTLSEEQE 2590
Cdd:pfam19220 43 LPQAKSRLLELEALLAQERAAYGKLRRELAGLTRRLSAAEGELEELVARLAKLEAALR---EAEAAKE-ELRIELRDKTA 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2591 KANSVQKLLAAEQTVVRDLKSDLCESRQKSEQLSRSLCEVQQEVLQLRSMLSSKENELKAaLQELESEQG-KGRALQSQL 2669
Cdd:pfam19220 119 QAEALERQLAAETEQNRALEEENKALREEAQAAEKALQRAEGELATARERLALLEQENRR-LQALSEEQAaELAELTRRL 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2670 EE-EQLR--HLQRESQSAKALEELRASLETQRAQSSRLCVALKHEQTAKDNLQKELRIEHSRCEALLAQERSQLSELQKD 2746
Cdd:pfam19220 198 AElETQLdaTRARLRALEGQLAAEQAERERAEAQLEEAVEAHRAERASLRMKLEALTARAAATEQLLAEARNQLRDRDEA 277
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2747 LAAEKSRTLELSEAL-----RHERLLTEQLSQRTQEACVHQ---DTQAHHALLQKLKEEKS--------RVVDLQAMLEK 2810
Cdd:pfam19220 278 IRAAERRLKEASIERdtlerRLAGLEADLERRTQQFQEMQRaraELEERAEMLTKALAAKDaaleraeeRIASLSDRIAE 357
|
330 340
....*....|....*....|....*..
gi 81295809 2811 VQQQALHSQQQLEAEAQKHCEALRREK 2837
Cdd:pfam19220 358 LTKRFEVERAALEQANRRLKEELQRER 384
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
2455-2944 |
4.85e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 42.90 E-value: 4.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2455 QVVQEAFEKEQEMQGVELQPRLSGSDlgghssllERLEKIiREQGDLQEKSLEhlrlpdrssllSEIQALRAQLRMTHLQ 2534
Cdd:pfam12128 371 QDVTAKYNRRRSKIKEQNNRDIAGIK--------DKLAKI-REARDRQLAVAE-----------DDLQALESELREQLEA 430
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2535 --NQEKLQHLRTALTSAEARGSQQEHQLRRQvELLAYKVEQEKCIAGDlqktlsEEQEKANSVQKLLAAEQTVVRDLKSd 2612
Cdd:pfam12128 431 gkLEFNEEEYRLKSRLGELKLRLNQATATPE-LLLQLENFDERIERAR------EEQEAANAEVERLQSELRQARKRRD- 502
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2613 lcESRQKSEQLSRSLCEVQQEVLQLRSMLSSKENELKAAL--QELESEQGKGRALQSQL--------------------- 2669
Cdd:pfam12128 503 --QASEALRQASRRLEERQSALDELELQLFPQAGTLLHFLrkEAPDWEQSIGKVISPELlhrtdldpevwdgsvggelnl 580
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2670 -----------------EEEQLRH--------LQRESQSAKALEE----LRASLETQRAQSSRLCVALKHEQTAKDNLQK 2720
Cdd:pfam12128 581 ygvkldlkridvpewaaSEEELRErldkaeeaLQSAREKQAAAEEqlvqANGELEKASREETFARTALKNARLDLRRLFD 660
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2721 ELRIEHSRCEALLAQERSQLSELQKDLAAEKsrtlelsealrherlltEQLSQRTQEACVHQDTQAHHALLQKLKEEKSR 2800
Cdd:pfam12128 661 EKQSEKDKKNKALAERKDSANERLNSLEAQL-----------------KQLDKKHQAWLEEQKEQKREARTEKQAYWQVV 723
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2801 VVDLQAMLEKVQQQALHSQQQLEAEAQKHCEALRREKEVSATLKSTVEALHTQKRELRCSLER-EREKPAWLQAELEQSH 2879
Cdd:pfam12128 724 EGALDAQLALLKAAIAARRSGAKAELKALETWYKRDLASLGVDPDVIAKLKREIRTLERKIERiAVRRQEVLRYFDWYQE 803
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 81295809 2880 PRLKEQEGRKAARRSAEARQSPAAAEQWRKWQRDKEKLRELELQR---QRDLHKIKQLQQTVRDLESK 2944
Cdd:pfam12128 804 TWLQRRPRLATQLSNIERAISELQQQLARLIADTKLRRAKLEMERkasEKQQVRLSENLRGLRCEMSK 871
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1264-1933 |
5.08e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 42.80 E-value: 5.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1264 SLAVDGLMEMALDSSRQLEEARQIHSRFEKEFSFKNEETAQVVRKHqellecLKEESAAKAELALELHKTQGTLEGFKVE 1343
Cdd:pfam15921 169 NTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTMH------FRSLGSAISKILRELDTEISYLKGRIFP 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1344 TADLKEVLagKEDSEHRLVLELEslrrqlqqaaqeqaALREECTRLWSRGEATATDAEAREAALRKEVEDLTKEQSETRK 1423
Cdd:pfam15921 243 VEDQLEAL--KSESQNKIELLLQ--------------QHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQE 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1424 QAEKDRSALLSQMKILESELEEQLSQHRGCAKQAE-AVTALEQQVASLDKHLRNQRQFMDEqaaerehereeFQQEIQRL 1502
Cdd:pfam15921 307 QARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEdKIEELEKQLVLANSELTEARTERDQ-----------FSQESGNL 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1503 EGQLRQAAKpqpwgprDSQQAPLDGEVELLQQKLREKLDEFNELAI---QKESADRQVlmqeeEIKRLEEMninIRKKVA 1579
Cdd:pfam15921 376 DDQLQKLLA-------DLHKREKELSLEKEQNKRLWDRDTGNSITIdhlRRELDDRNM-----EVQRLEAL---LKAMKS 440
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1580 QLQEEVEKQKNIVKGLEQdkevlkkqqmsSLLLASTLQSTLDAGRCPEPPSGSPPEGPEIQLEVTQRAllrreseVLDLK 1659
Cdd:pfam15921 441 ECQGQMERQMAAIQGKNE-----------SLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERT-------VSDLT 502
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1660 EQLEKMKGDLESKNEEILHLNLKLDMQNSQ------TAVSLRELEEENTSLKVIYTRSSE-IEELKATIENLQE---NQK 1729
Cdd:pfam15921 503 ASLQEKERAIEATNAEITKLRSRVDLKLQElqhlknEGDHLRNVQTECEALKLQMAEKDKvIEILRQQIENMTQlvgQHG 582
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1730 RLQKEKAEEIEQLHEVIEKLQHELSLMgPVVHEVSDSQAGSLQS--------ELLCSQAGGPRGQALQ------------ 1789
Cdd:pfam15921 583 RTAGAMQVEKAQLEKEINDRRLELQEF-KILKDKKDAKIRELEArvsdleleKVKLVNAGSERLRAVKdikqerdqllne 661
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1790 -----GELEAALEAKEALSRLLADQERRHSQALEALQQRLQGAEEAAE-----LQLAE------------LERNVALREA 1847
Cdd:pfam15921 662 vktsrNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEqtrntLKSMEgsdghamkvamgMQKQITAKRG 741
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1848 EVEDMASRIQEFEAALkakeatiAERNLEIDALNQRKAAHSAELEAVllalarirrALEQQPLAAgaappELQWLRAQCA 1927
Cdd:pfam15921 742 QIDALQSKIQFLEEAM-------TNANKEKHFLKEEKNKLSQELSTV---------ATEKNKMAG-----ELEVLRSQER 800
|
....*.
gi 81295809 1928 RLSRQL 1933
Cdd:pfam15921 801 RLKEKV 806
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
309-935 |
5.14e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 42.79 E-value: 5.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 309 QHAREKEEVVLRCGQEAAELKEKLQSEMEKNAQIVKTLKEDWESEKDLCleNLRKELSAKHQSEMedlqnqfqKELAEQR 388
Cdd:pfam05483 109 QENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKENNATRHLC--NLLKETCARSAEKT--------KKYEYER 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 389 AELEKIFQDKNQaeralrNLESHhQAAIEKLRedLQSEHGRCleDLEFKFKES-------EKEKQLELENLQASYEDLKA 461
Cdd:pfam05483 179 EETRQVYMDLNN------NIEKM-ILAFEELR--VQAENARL--EMHFKLKEDhekiqhlEEEYKKEINDKEKQVSLLLI 247
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 462 QSQEEIRRLWSQLDSARTSRQELSELHEQllartSRVEDlEQLKQREKTQHE--SELEQLRIYFEKKLrDAEKTYQEDL- 538
Cdd:pfam05483 248 QITEKENKMKDLTFLLEESRDKANQLEEK-----TKLQD-ENLKELIEKKDHltKELEDIKMSLQRSM-STQKALEEDLq 320
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 539 ----TLLQ---------QRLQGAREDALLDSVEVGLSCVGLEE--KPEKGR----KDHVDELEPERHKESlprfqAELEE 599
Cdd:pfam05483 321 iatkTICQlteekeaqmEELNKAKAAHSFVVTEFEATTCSLEEllRTEQQRleknEDQLKIITMELQKKS-----SELEE 395
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 600 SHRH------QLEALESPLCiQHEGHVSDRCCVETSAlghewrlEPSEGHSQELPW--------VHLQGVQDGDLEADTE 665
Cdd:pfam05483 396 MTKFknnkevELEELKKILA-EDEKLLDEKKQFEKIA-------EELKGKEQELIFllqarekeIHDLEIQLTAIKTSEE 467
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 666 RAAR-VLGLETEHKVQlSLLQTELKEEIELLKIENRNLygkLQHETRLKDDLEKvkhnliedHQKELNNAKQKTELMKQE 744
Cdd:pfam05483 468 HYLKeVEDLKTELEKE-KLKNIELTAHCDKLLLENKEL---TQEASDMTLELKK--------HQEDIINCKKQEERMLKQ 535
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 745 ---FQRKETDWKVMKEELQREAEEKLTLMLLELrEKAESEKQTIINKFELREAEMRQLQDQQAaqilDLERSLTEQQGRL 821
Cdd:pfam05483 536 ienLEEKEMNLRDELESVREEFIQKGDEVKCKL-DKSEENARSIEYEVLKKEKQMKILENKCN----NLKKQIENKNKNI 610
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 822 QQLEQDltsddalhcSQCGREPPTAQDGELAALHVKEDcALQLMLARSRfleerkeitEKFSAEQDAFLQEAQEQHAREL 901
Cdd:pfam05483 611 EELHQE---------NKALKKKGSAENKQLNAYEIKVN-KLELELASAK---------QKFEEIIDNYQKEIEDKKISEE 671
|
650 660 670
....*....|....*....|....*....|....*....
gi 81295809 902 QLLQERHQQQLLSVTA-----ELEARHQAALGELTASLE 935
Cdd:pfam05483 672 KLLEEVEKAKAIADEAvklqkEIDKRCQHKIAEMVALME 710
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
791-1173 |
5.53e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 42.64 E-value: 5.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 791 LREAEMRQLQDQQAAQI----LDLERSLTEQQGRLQQLEQDLTSddalhcsQCGREPPTAQDGELAALHvkedcaLQLML 866
Cdd:PRK04863 275 MRHANERRVHLEEALELrrelYTSRRQLAAEQYRLVEMARELAE-------LNEAESDLEQDYQAASDH------LNLVQ 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 867 ARSRFLEErkeiTEKFSAEqdafLQEAQEQHARELQLLQERHQQQllsvtAELEARHQAA---LGELTASLESKQGALLA 943
Cdd:PRK04863 342 TALRQQEK----IERYQAD----LEELEERLEEQNEVVEEADEQQ-----EENEARAEAAeeeVDELKSQLADYQQALDV 408
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 944 ARVAELQTKHAadLGALE-TRHLSSLDSLESCYLSEFQTIREEHRQALELLRADFEEQLwkkdSLHQTILTQeleklkrk 1022
Cdd:PRK04863 409 QQTRAIQYQQA--VQALErAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKL----SVAQAAHSQ-------- 474
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1023 HEGELQSVRdHLRTEVSTELAGTVAHELQG-----VHQGEFGSEKKTALHEKEETLRLQSAQ---AQPFHQEEKESLSLQ 1094
Cdd:PRK04863 475 FEQAYQLVR-KIAGEVSRSEAWDVARELLRrlreqRHLAEQLQQLRMRLSELEQRLRQQQRAerlLAEFCKRLGKNLDDE 553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1095 LQKKNHQVQQ------LKDQVLSLSHEIEECRSELEVLQQRRER-ENREGANLlsmlkadvnlshsergALQDALRRLLG 1167
Cdd:PRK04863 554 DELEQLQEELearlesLSESVSEARERRMALRQQLEQLQARIQRlAARAPAWL----------------AAQDALARLRE 617
|
....*.
gi 81295809 1168 LFGETL 1173
Cdd:PRK04863 618 QSGEEF 623
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
2561-3081 |
5.76e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 42.65 E-value: 5.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2561 RRQVELLAYKVEQEKCIAGDLQKTLSEEQEKANSVQKLLAAEQTVVRDLKSDLCESRQKSEQLSRSLCEVQQEVLQlrsm 2640
Cdd:TIGR00618 165 KKELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQ---- 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2641 lssKENELKAALQELESEQGKGRALQsqleeEQLRHLQRESQSAKALEELRASLETQRAQSSRLCVALKHEQTAKDNLQK 2720
Cdd:TIGR00618 241 ---SHAYLTQKREAQEEQLKKQQLLK-----QLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRI 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2721 ELRIEHSrcEALLAQERSQLSELQKDLAAEKSRTLELSEALRHERLL----TEQLSQRTQEACVHQDTQAHHALLQKLKE 2796
Cdd:TIGR00618 313 HTELQSK--MRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIrdahEVATSIREISCQQHTLTQHIHTLQQQKTT 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2797 EKSRVVDLQAMLEKVQQQALHSQQQLEAEAQKHCEALRREKEVSATLKSTVEALHTQKRELRCSLEREREkpawlQAELE 2876
Cdd:TIGR00618 391 LTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIH-----LQESA 465
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2877 QSHPRLKEQEGRKAARRSAEARQSPAAAEQWRKWQRDKEKLRELELQRQRDLHKIKQLQQTVRDLES-KDEVPGSRLHLG 2955
Cdd:TIGR00618 466 QSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRgEQTYAQLETSEE 545
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2956 SARRAAGSDADHLREQQRELEAMRQRLLSAARLLTSFTS-----QAVDRTVNDWTSSNEKAVMSLLHTLEELKSDLSRPT 3030
Cdd:TIGR00618 546 DVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEdipnlQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQ 625
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|.
gi 81295809 3031 SSQKKMAAELQFQFVDVLLKdnVSLTKALSTVTQEKLELSRAVSKLEKLLK 3081
Cdd:TIGR00618 626 DLQDVRLHLQQCSQELALKL--TALHALQLTLTQERVREHALSIRVLPKEL 674
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
218-504 |
5.94e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 42.33 E-value: 5.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 218 ECELAITDLESGRED--------EAGLHQSQAVHGLELEALRLSLSNMHTAQLELTQANLQKEKETALTELREmlnsrRA 289
Cdd:PRK02224 472 EDRERVEELEAELEDleeeveevEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRE-----RA 546
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 290 QELallqsrqQHELELLREQhAREKEEVVLRCGQEAAELKEKLQ---SEMEKNAQIVKTLKEDWESEKDLclENLRKELs 366
Cdd:PRK02224 547 AEL-------EAEAEEKREA-AAEAEEEAEEAREEVAELNSKLAelkERIESLERIRTLLAAIADAEDEI--ERLREKR- 615
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 367 aKHQSEMEDLQNQFQKELAEQRAELEKIFQDknqaeralrnleshhqAAIEKLREDLQsehgrcledlefkfkesekekq 446
Cdd:PRK02224 616 -EALAELNDERRERLAEKRERKRELEAEFDE----------------ARIEEAREDKE---------------------- 656
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 81295809 447 lELENLQASYEDLKAQSQEEIRRLWSQLDSARTSRQELSELHEQLLARTSRVEDLEQL 504
Cdd:PRK02224 657 -RAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEELRERREALENRVEALEAL 713
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
328-550 |
6.01e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 42.58 E-value: 6.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 328 LKEKLQSEMEKNAQIVKTLKEDWESEKDLCLEnlRKELSAKHQSEMEDLQNqfqkeLAEQRAELEKIFQDKNQAERALRN 407
Cdd:PRK01156 188 LEEKLKSSNLELENIKKQIADDEKSHSITLKE--IERLSIEYNNAMDDYNN-----LKSALNELSSLEDMKNRYESEIKT 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 408 LESHHQAAIEKLRE--DLQSEHGRCLEDLEFKfkesEKEKQLELENLQASYEDLKaqsqEEIRRLWSQLDSARTSRQELS 485
Cdd:PRK01156 261 AESDLSMELEKNNYykELEERHMKIINDPVYK----NRNYINDYFKYKNDIENKK----QILSNIDAEINKYHAIIKKLS 332
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 81295809 486 EL---HEQLLARTSRVEDLEQLKQREKTQHESELEQLRIYFEKKL-RDAEKTYQEDLTLLQQRLQGARE 550
Cdd:PRK01156 333 VLqkdYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKkIEEYSKNIERMSAFISEILKIQE 401
|
|
| ClyA_Cry6Aa-like |
cd22656 |
Bacillus thuringiensis crystal 6Aa (Cry6Aa) toxin, and similar proteins; This model includes ... |
1657-1754 |
6.11e-03 |
|
Bacillus thuringiensis crystal 6Aa (Cry6Aa) toxin, and similar proteins; This model includes pesticidal Cry6Aa toxin from Bacillus thuringiensis, one of the many parasporal crystal (Cry) toxins produced during the sporulation phase of growth. Many of these proteins are toxic to numerous insect species and have been effectively used as proteinaceous insecticides to directly kill insect pests; some have been used to control insect growth on transgenic agricultural plants. Cry6Aa exists as a protoxin, which is activated by cleavage using trypsin. Structure studies for Cry6Aa support a mechanism of action by pore formation, similar to cytolysin A (ClyA)-type alpha pore-forming toxins (alpha-PFTs) such as HblB, and bioassay and mutation studies show that Cry6Aa is an active pore-forming toxin. Cry6Aa shows atypical features compared to other members of alpha-PFTs, including internal repeat sequences and small loop regions within major alpha helices.
Pssm-ID: 439154 [Multi-domain] Cd Length: 309 Bit Score: 41.59 E-value: 6.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1657 DLKEQLEKMKGDLESKNEEILHLNLKLDMQNSQTAVSLRELEEENTSLKVIYTRSSEIEElKATIENLQENQKRLQKEKA 1736
Cdd:cd22656 118 TIKALLDDLLKEAKKYQDKAAKVVDKLTDFENQTEKDQTALETLEKALKDLLTDEGGAIA-RKEIKDLQKELEKLNEEYA 196
|
90 100
....*....|....*....|..
gi 81295809 1737 ----EEIEQLHEVIEKLQHELS 1754
Cdd:cd22656 197 aklkAKIDELKALIADDEAKLA 218
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
1642-1753 |
6.29e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 42.15 E-value: 6.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1642 EVTQRALLRRESEVLDLKEQLEKmkgDLESKNEEILHLNLKLDmqnsqtavslrELEEENTSLKviytrsSEIEELKATI 1721
Cdd:COG2433 384 ELIEKELPEEEPEAEREKEHEER---ELTEEEEEIRRLEEQVE-----------RLEAEVEELE------AELEEKDERI 443
|
90 100 110
....*....|....*....|....*....|....*...
gi 81295809 1722 ENLQENQKRLQKEKAEEIEQLHEV------IEKLQHEL 1753
Cdd:COG2433 444 ERLERELSEARSEERREIRKDREIsrldreIERLEREL 481
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
655-808 |
6.32e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.07 E-value: 6.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 655 VQDGDLEADTERAARVLGLETEHKVQLSLLQTELKE-EIELLKIENRNLygklQHETRLKDDLEkvkhnLIEDHQKELNN 733
Cdd:PRK12704 44 LEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRErRNELQKLEKRLL----QKEENLDRKLE-----LLEKREEELEK 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 734 AKQKTELMKQEFQRKETDWKVMKEELQRE--------AEEKLTLMLLELREKAESEKQTIINKFelrEAEMRQLQDQQAA 805
Cdd:PRK12704 115 KEKELEQKQQELEKKEEELEELIEEQLQElerisgltAEEAKEILLEKVEEEARHEAAVLIKEI---EEEAKEEADKKAK 191
|
...
gi 81295809 806 QIL 808
Cdd:PRK12704 192 EIL 194
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
323-454 |
6.36e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 42.51 E-value: 6.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 323 QEAAELKEKLQsEMEKnaqivktLKEDWESEKDlclenlrkELSAKHQSEMEDLQNQFQKELAEQRAELEKIFqdknqae 402
Cdd:PRK00409 534 QKAEEAEALLK-EAEK-------LKEELEEKKE--------KLQEEEDKLLEEAEKEAQQAIKEAKKEADEII------- 590
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 81295809 403 RALRNLESHHQAAIEklREDLQSEHGRcLEDLEFKFKESEKEKQLELENLQA 454
Cdd:PRK00409 591 KELRQLQKGGYASVK--AHELIEARKR-LNKANEKKEKKKKKQKEKQEELKV 639
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
366-552 |
7.66e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 7.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 366 SAKHQSEMEDLQNQFQKELAEQRAELEKIFQDKNQAERALRNLESHHQAAIEKLR--EDLQSEHGRCLEDLEfkfkESEK 443
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRalEQELAALEAELAELE----KEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 444 EKQLELENLQASYEDL-----KAQSQEEIRRLWSQLDSARTSR---------QELSELHEQLLARTSRVEDLEQLKQREK 509
Cdd:COG4942 94 ELRAELEAQKEELAELlralyRLGRQPPLALLLSPEDFLDAVRrlqylkylaPARREQAEELRADLAELAALRAELEAER 173
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 81295809 510 TQHESELEQLRIYfEKKLRDAEKTYQEDLTLLQQRLQGAREDA 552
Cdd:COG4942 174 AELEALLAELEEE-RAALEALKAERQKLLARLEKELAELAAEL 215
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
849-1587 |
7.74e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 42.26 E-value: 7.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 849 GELAALHVKEDCALQLMLARSRFLEERKEITEKFSAEQDAFLQEAQEQHA-----RELQLLQERHQQQLLSVTAELEaRH 923
Cdd:TIGR00618 194 GKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAyltqkREAQEEQLKKQQLLKQLRARIE-EL 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 924 QAALGELTASLESKQGALLAARVAELQtKHAADLGALETRHLSSLDSLESCYLSEFQtireeHRQALELLRADFEEQLWK 1003
Cdd:TIGR00618 273 RAQEAVLEETQERINRARKAAPLAAHI-KAVTQIEQQAQRIHTELQSKMRSRAKLLM-----KRAAHVKQQSSIEEQRRL 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1004 KDSLHQtiltqELEKLKRKHEGELqSVRDHLRTEVSTElagtvAHELQGVHQGEFGSEKKTALHEKEETLRLQSAQAQPF 1083
Cdd:TIGR00618 347 LQTLHS-----QEIHIRDAHEVAT-SIREISCQQHTLT-----QHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTR 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1084 HQEEKESLSLQLQKKNHQVQQLKDQVLSLSHEIEECRSEL--EVLQQRRERENREGANLLSMLKA---DVNLSHSERGAL 1158
Cdd:TIGR00618 416 TSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKleKIHLQESAQSLKEREQQLQTKEQihlQETRKKAVVLAR 495
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1159 QDALRRLLGLFGETLRAAVTLRSRIGERVGLClddagaglalstapaleetwsdvalPELDRTLSECAEMSSVAEISSHM 1238
Cdd:TIGR00618 496 LLELQEEPCPLCGSCIHPNPARQDIDNPGPLT-------------------------RRMQRGEQTYAQLETSEEDVYHQ 550
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1239 RESFLMSPESVRECEQPIRRVFQSLSLAVDGLMEmaldssrQLEEARQIHSRFEKEFSFKNEETAQVVRKHQELLECLKE 1318
Cdd:TIGR00618 551 LTSERKQRASLKEQMQEIQQSFSILTQCDNRSKE-------DIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQP 623
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1319 EsAAKAELALELHKTQGTLEGFKVETADLKEVLAGKEDSEHrlvlelesLRRQLQQAAQEQAALREECTRLWSRGEATAT 1398
Cdd:TIGR00618 624 E-QDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREH--------ALSIRVLPKELLASRQLALQKMQSEKEQLTY 694
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1399 DAE--AREAALRKEVEDLTKEQSETRKQAEKDRSALLSQMKILESELEEQLSQHRGCAKQAEAVTALEQQVASLDKHLRN 1476
Cdd:TIGR00618 695 WKEmlAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAAL 774
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1477 QRqfmDEQAAEREHEREEFQQEIQRLEGQLRQAaKPQPWGPRDSQQAPLDGEVELLQQKLREKLDEFNELAIQKESADRQ 1556
Cdd:TIGR00618 775 QT---GAELSHLAAEIQFFNRLREEDTHLLKTL-EAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQ 850
|
730 740 750
....*....|....*....|....*....|.
gi 81295809 1557 VLMQEEEIKRLEEMNinirKKVAQLQEEVEK 1587
Cdd:TIGR00618 851 LLKYEECSKQLAQLT----QEQAKIIQLSDK 877
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
386-1118 |
7.83e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 42.13 E-value: 7.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 386 EQRAELEKIFQDKNQAERALRNLESHHQAAIEklredlqseHGRCLEDLEFKFKESEKEKQLELENLQAsyeDLKAQSQE 465
Cdd:pfam12128 238 KIRPEFTKLQQEFNTLESAELRLSHLHFGYKS---------DETLIASRQEERQETSAELNQLLRTLDD---QWKEKRDE 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 466 EIRRLWSQLDSARTSRQELSELHEQLLARTSrvEDLEQLK--QREKTQHESELEQLriyfeKKLRDAEKTYQEDLTLLQQ 543
Cdd:pfam12128 306 LNGELSAADAAVAKDRSELEALEDQHGAFLD--ADIETAAadQEQLPSWQSELENL-----EERLKALTGKHQDVTAKYN 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 544 RLQGAREDALLDSVEvglscvGLEEKPEKGRKDHVdeleperhkeslprFQAELEESHrhqLEALESPLCIQHEGHVSDr 623
Cdd:pfam12128 379 RRRSKIKEQNNRDIA------GIKDKLAKIREARD--------------RQLAVAEDD---LQALESELREQLEAGKLE- 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 624 ccVETSALGHEWRLEPSEGH---SQELPWVHLQGVQDGDL-----EADTERAARVLGLETEhkvqLSLLQTELKEEIELL 695
Cdd:pfam12128 435 --FNEEEYRLKSRLGELKLRlnqATATPELLLQLENFDERierarEEQEAANAEVERLQSE----LRQARKRRDQASEAL 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 696 KIENRNLYGKLQHETRLKDDLEKVKHNLIEDHQKELNNAKQKTELMKQEFQRKETDwkVMKEELQREAEEKLTLMLLELR 775
Cdd:pfam12128 509 RQASRRLEERQSALDELELQLFPQAGTLLHFLRKEAPDWEQSIGKVISPELLHRTD--LDPEVWDGSVGGELNLYGVKLD 586
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 776 EKAesekqtiinkfeLREAEMRQLQDQQAAQILDLERSLTEQQGRLQQLEQDLtsddalhcSQCGREPPTAQDGELAALH 855
Cdd:pfam12128 587 LKR------------IDVPEWAASEEELRERLDKAEEALQSAREKQAAAEEQL--------VQANGELEKASREETFART 646
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 856 VKEDCALQL------MLARSRFLEERKEITEKFSAEQDAFLQEAQEQHARELQLLQERHQQQLLSVTAELEARHQAALGE 929
Cdd:pfam12128 647 ALKNARLDLrrlfdeKQSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGA 726
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 930 LTASLeskqgALLAARVAELQTKHAADLGALETRHLSSLDSL--ESCYLSEFQTIREEHRQALELLRADFEEQLWKKDSL 1007
Cdd:pfam12128 727 LDAQL-----ALLKAAIAARRSGAKAELKALETWYKRDLASLgvDPDVIAKLKREIRTLERKIERIAVRRQEVLRYFDWY 801
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1008 HQTILTQE--LEKLKRKHEGELQSVRDHL-RTEVSTELagtvahELQGVHQGEFGSEKktALHEKEETLR----LQSAQA 1080
Cdd:pfam12128 802 QETWLQRRprLATQLSNIERAISELQQQLaRLIADTKL------RRAKLEMERKASEK--QQVRLSENLRglrcEMSKLA 873
|
730 740 750
....*....|....*....|....*....|....*...
gi 81295809 1081 QPFHQEEKESLSLQLQKKNHQVQQLKDQVLSLSHEIEE 1118
Cdd:pfam12128 874 TLKEDANSEQAQGSIGERLAQLEDLKLKRDYLSESVKK 911
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1532-1904 |
7.87e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 42.27 E-value: 7.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1532 LQQKLREKLDEFNELAIQKESADRQVLMQEEEIKRLEEMNINIRKKVAQLQEEVEKQKNIVKGLEQDKEVLKKQQMSSLL 1611
Cdd:pfam02463 234 LNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDE 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1612 LA-STLQSTLDAGRCPEPPSGSPPEGPEIQLEVTQRALLRRESEVLDLKEQLEKmkgdlESKNEEILHLNLKLDMQNSQT 1690
Cdd:pfam02463 314 EKlKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEK-----LEQLEEELLAKKKLESERLSS 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1691 AVSLREL------EEENTSLKVIYTRSSEIEELKATI----ENLQENQKRLQKEKAEEIEQLHEVIEKLQHELSLMGpVV 1760
Cdd:pfam02463 389 AAKLKEEelelksEEEKEAQLLLELARQLEDLLKEEKkeelEILEEEEESIELKQGKLTEEKEELEKQELKLLKDEL-EL 467
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1761 HEVSDSQAGSLQSELLCSQAGGPRGQALQGELEAALEAKEALSRLLADQERRHSQALEALQQRLQGAEEAAELQLAELER 1840
Cdd:pfam02463 468 KKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAIST 547
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 81295809 1841 NVALREAEVEDMASRIQEFEAALKAKEATIAERNLEIDALNQRKAAHSAELEAVLLALARIRRA 1904
Cdd:pfam02463 548 AVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKA 611
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
2518-2762 |
7.89e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 42.25 E-value: 7.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2518 LSEIQALRAQLRMTHLQNQEKLQHLRTALtsaeargsQQEHQLRRQVELLAYKVEQEKCIagDLQKTLSEEQEKANSVQ- 2596
Cdd:COG3096 845 RSELERELAQHRAQEQQLRQQLDQLKEQL--------QLLNKLLPQANLLADETLADRLE--ELREELDAAQEAQAFIQq 914
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2597 --KLLAAEQTVVRDLKSDlcesRQKSEQLSRSLCEVQQEVLQLRSMLSS----KENELKAALQELESEQGKGRALQSQLe 2670
Cdd:COG3096 915 hgKALAQLEPLVAVLQSD----PEQFEQLQADYLQAKEQQRRLKQQIFAlsevVQRRPHFSYEDAVGLLGENSDLNEKL- 989
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2671 EEQLRHLqrESQSAKALEELRAsLETQRAQSSRLCVALKHEQTAKDNLQKEL-------------------RIEHSRCEA 2731
Cdd:COG3096 990 RARLEQA--EEARREAREQLRQ-AQAQYSQYNQVLASLKSSRDAKQQTLQELeqeleelgvqadaeaeeraRIRRDELHE 1066
|
250 260 270
....*....|....*....|....*....|.
gi 81295809 2732 LLAQERSQLSELQKDLAAEKSRTLELSEALR 2762
Cdd:COG3096 1067 ELSQNRSRRSQLEKQLTRCEAEMDSLQKRLR 1097
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
218-921 |
8.06e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.98 E-value: 8.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 218 ECELAITDLESGREDEAGLHQSQAVHGLELEALRLSlsnMHTAQLELTQANLQKEKETALTELR----------EMLNSR 287
Cdd:TIGR02169 231 EKEALERQKEAIERQLASLEEELEKLTEEISELEKR---LEEIEQLLEELNKKIKDLGEEEQLRvkekigeleaEIASLE 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 288 RAQELALLQ----SRQQHELELLREQHAREKEEVVLRCGQEAAElKEKLQSEMEKNAQIVKTLKEDWEsEKDLCLENLRK 363
Cdd:TIGR02169 308 RSIAEKEREledaEERLAKLEAEIDKLLAEIEELEREIEEERKR-RDKLTEEYAELKEELEDLRAELE-EVDKEFAETRD 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 364 ELSaKHQSEMEDLQ---NQFQKELAEQRAELEKIFQDKNQAERALRNLESHHqAAIEKLREDLQSEHGRCLEDLE--FKF 438
Cdd:TIGR02169 386 ELK-DYREKLEKLKreiNELKRELDRLQEELQRLSEELADLNAAIAGIEAKI-NELEEEKEDKALEIKKQEWKLEqlAAD 463
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 439 KESEKEKQLELENLQASYEDLKAQSQEEIRRLWSQLDSARTSRQELSELHEQLLARTSRV-------------------- 498
Cdd:TIGR02169 464 LSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVhgtvaqlgsvgeryataiev 543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 499 ------------------EDLEQLKQR-----------EKTQHESELEQLR-----------IYFEKKLRDAEKTYQEDl 538
Cdd:TIGR02169 544 aagnrlnnvvveddavakEAIELLKRRkagratflplnKMRDERRDLSILSedgvigfavdlVEFDPKYEPAFKYVFGD- 622
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 539 TLLQQRLQGAREdaLLDSVEVglscVGLE-EKPEKG-------RKDHVDELEPERHKESLPRFQAELEESHRhQLEALES 610
Cdd:TIGR02169 623 TLVVEDIEAARR--LMGKYRM----VTLEgELFEKSgamtggsRAPRGGILFSRSEPAELQRLRERLEGLKR-ELSSLQS 695
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 611 plciqheghvsdrccvetsalghewRLEPSEGHSQELpwvhLQGVQdgDLEADTERAARVLGLETEHKVQLSLLQTELKE 690
Cdd:TIGR02169 696 -------------------------ELRRIENRLDEL----SQELS--DASRKIGEIEKEIEQLEQEEEKLKERLEELEE 744
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 691 EIELLKIENRNLYGKLQHETRLKDDLEKVKHNLiedhQKELNNAKQKteLMKQEFQRKETDWKVMKEELQR--------E 762
Cdd:TIGR02169 745 DLSSLEQEIENVKSELKELEARIEELEEDLHKL----EEALNDLEAR--LSHSRIPEIQAELSKLEEEVSRiearlreiE 818
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 763 AEEKLTLMLLELREKAESEKQTIINKFELREAEMRQLQDQQAAQILDLERSLTEQQGRLQQLEQ---DLTSDDALHCSQc 839
Cdd:TIGR02169 819 QKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESrlgDLKKERDELEAQ- 897
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 840 GREPPTAQDGELAALHVKEDCALQLMLARSRFLEERKEItekfsaeqDAFLQEAQEQHARELQLlqERHQQQLLSVTAEL 919
Cdd:TIGR02169 898 LRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEI--------EDPKGEDEEIPEEELSL--EDVQAELQRVEEEI 967
|
..
gi 81295809 920 EA 921
Cdd:TIGR02169 968 RA 969
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
225-507 |
8.24e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 42.08 E-value: 8.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 225 DLESGREDEAGLHQSQAVHGLELEALRLSLSNmhTAQLELTQANLQKEKETALTELREMLNSR-RAQELALLQSRQQH-- 301
Cdd:pfam01576 279 DLESERAARNKAEKQRRDLGEELEALKTELED--TLDTTAAQQELRSKREQEVTELKKALEEEtRSHEAQLQEMRQKHtq 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 302 ---ELELLREQHAREKEEVvlrcgQEAAELKEKLQSEMEKNAQIVKTLKEDWESEKDLcLENLRKELSAKHqSEMEDLQN 378
Cdd:pfam01576 357 aleELTEQLEQAKRNKANL-----EKAKQALESENAELQAELRTLQQAKQDSEHKRKK-LEGQLQELQARL-SESERQRA 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 379 QFQKELAEQRAELEKIFQDKNQAE-------RALRNLESHHQAAIEKLREDLQ-----SEHGRCLED-----LEFKFKES 441
Cdd:pfam01576 430 ELAEKLSKLQSELESVSSLLNEAEgkniklsKDVSSLESQLQDTQELLQEETRqklnlSTRLRQLEDernslQEQLEEEE 509
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 81295809 442 EKEKQLE--LENLQASYEDLKAQSQEEIRRLWSQLDSARTSRQELSELHEQLLARTSRVEDLEQLKQR 507
Cdd:pfam01576 510 EAKRNVErqLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNR 577
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
2452-2912 |
9.24e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.82 E-value: 9.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2452 DLLQVVQEAFEKEQEMQG--VELQPRLSGSDLGGHSSLLERLEKIIREQGDLQEKSLEHLRL--PDRSSLLSEIQALRAQ 2527
Cdd:COG4913 252 ELLEPIRELAERYAAARErlAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERleARLDALREELDELEAQ 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2528 LRMTHLQNQEKLQHLRTALTSAEARGSQQEHQLRRQVELLAYKVEQEkciAGDLQKTLSEEQEKANSVQKLLAAEQTVVR 2607
Cdd:COG4913 332 IRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPAS---AEEFAALRAEAAALLEALEEELEALEEALA 408
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2608 DLKSDLCESRQKSEQLSRSLCEVQQ-------EVLQLRSMLSS----KENEL---------------------------- 2648
Cdd:COG4913 409 EAEAALRDLRRELRELEAEIASLERrksnipaRLLALRDALAEalglDEAELpfvgelievrpeeerwrgaiervlggfa 488
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2649 ----------KAALQELESEQGKGRaLQSQLEEEQLRHLQRESQSAKAL-EEL-------RASLETQ-RAQSSRLCV--- 2706
Cdd:COG4913 489 ltllvppehyAAALRWVNRLHLRGR-LVYERVRTGLPDPERPRLDPDSLaGKLdfkphpfRAWLEAElGRRFDYVCVdsp 567
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2707 -ALKHEQTA-------KDNL---QKELRIEHSR-------CEALLAQERSQLSELQKDLAAEKSRTLELSEALRHERLLT 2768
Cdd:COG4913 568 eELRRHPRAitragqvKGNGtrhEKDDRRRIRSryvlgfdNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERR 647
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2769 EQLSQRTQEACVHQDTQAHHALLQKLKEEKSRVVD-------LQAMLEKVQQQalhsqqqlEAEAQKHCEALRREKevsA 2841
Cdd:COG4913 648 EALQRLAEYSWDEIDVASAEREIAELEAELERLDAssddlaaLEEQLEELEAE--------LEELEEELDELKGEI---G 716
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 81295809 2842 TLKSTVEALHTQKRELRCSLER-EREKPAWLQAELEQSHPRLKEQEGRKAARRSAEARQSPAAAEQWRKWQR 2912
Cdd:COG4913 717 RLEKELEQAEEELDELQDRLEAaEDLARLELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEE 788
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1279-1756 |
9.55e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 41.96 E-value: 9.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1279 RQLEEARQIHSRFEKEFSFKNEETAQVVRKHQELLEclKEESAAKAELALELHKTQGTLEGFKVETADLKEVLAGKEDSE 1358
Cdd:TIGR00606 440 RTIELKKEILEKKQEELKFVIKELQQLEGSSDRILE--LDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKL 517
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1359 HRLVLELESLRRQLQQAAQEQAALREECTR------LWSRGEATATdAEAREAALRKEVEDLTKEQSETRKQAEKDRSAL 1432
Cdd:TIGR00606 518 RKLDQEMEQLNHHTTTRTQMEMLTKDKMDKdeqirkIKSRHSDELT-SLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKL 596
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1433 LSQMKILES----------ELEEQLSQHRGCAKQAEAVTALEQQVASLDKHLRNQRQfmdeQAAEREHEREEFQQEIQRL 1502
Cdd:TIGR00606 597 NKELASLEQnknhinneleSKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSSK----QRAMLAGATAVYSQFITQL 672
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1503 EGQLRQAAkpqPWGPRDSQ-QAPLDGEVELLQQKLR---EKLDEFNELAIQKESADRQVL-----------MQEEEIKRL 1567
Cdd:TIGR00606 673 TDENQSCC---PVCQRVFQtEAELQEFISDLQSKLRlapDKLKSTESELKKKEKRRDEMLglapgrqsiidLKEKEIPEL 749
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1568 EEMNINIRKKVAQLQEEVEKQKNIVkGLEQDKEVLKKQQMSSLLLASTLQSTLDAGRCPEPPSGSPPEGPEIQLEVTQ-- 1645
Cdd:TIGR00606 750 RNKLQKVNRDIQRLKNDIEEQETLL-GTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQvn 828
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 1646 RALLRRESEVLDLKEQLEKMKGDLESKNEEILHLNLKLD------MQNSQTAVSLRELEEENTSL-KVIYTRSSEIEELK 1718
Cdd:TIGR00606 829 QEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNelksekLQIGTNLQRRQQFEEQLVELsTEVQSLIREIKDAK 908
|
490 500 510
....*....|....*....|....*....|....*...
gi 81295809 1719 ATIENLQENQKRLQKEKAEEIEQLHEVIEKLQHELSLM 1756
Cdd:TIGR00606 909 EQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDI 946
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
2704-2944 |
9.67e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.29 E-value: 9.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2704 LCVALKHEQTAKDNLQKEL---RIEHSRCEALLAQERSQLSELQKDLAAEKSRTLELSEALRherLLTEQLSQRTQEAcv 2780
Cdd:COG4942 11 LALAAAAQADAAAEAEAELeqlQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIR---ALEQELAALEAEL-- 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2781 hQDTQAHHALLQKLKEEKSRvvDLQAMLEKVQQQALHSQQQLEAEAQKHCEALRRekevSATLKSTVEALHTQKRELRCS 2860
Cdd:COG4942 86 -AELEKEIAELRAELEAQKE--ELAELLRALYRLGRQPPLALLLSPEDFLDAVRR----LQYLKYLAPARREQAEELRAD 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2861 LEREREKPAWLQAELEQSHPRLKEQEGRKAARRSAEARQSPAAAEQWRKWQRDKEKLRELELQRQRDLHKIKQLQQTVRD 2940
Cdd:COG4942 159 LAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
....
gi 81295809 2941 LESK 2944
Cdd:COG4942 239 AAER 242
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
2463-2886 |
9.77e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 41.63 E-value: 9.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2463 KEQEMQGVELQPRLSGSDLGGHSSLLERLEKIIREQgdlqEKSLEHLR--LPDRSSLLSE---IQALRAQLRMTH----- 2532
Cdd:pfam05483 368 EQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNK----EVELEELKkiLAEDEKLLDEkkqFEKIAEELKGKEqelif 443
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2533 -LQNQEKLQH-LRTALTSAEArgsqQEHQLRRQVELLAYKVEQEKCIAGDLQK---TLSEEQEKANSVQKLLAAEqtvVR 2607
Cdd:pfam05483 444 lLQAREKEIHdLEIQLTAIKT----SEEHYLKEVEDLKTELEKEKLKNIELTAhcdKLLLENKELTQEASDMTLE---LK 516
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2608 DLKSDLCESRQKSEQLSRSLCEVQQEVLQLRSMLSSKENELKAALQELESEQGKGRALQSQLEEEQLRHLQRESQSAKAL 2687
Cdd:pfam05483 517 KHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKC 596
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2688 EELRASLETQRAQSSRL---CVALKHEQTAKDNLQKELRIEHSRCEALLAQERSQLSEL----QKDLAAEKSRTLELSEA 2760
Cdd:pfam05483 597 NNLKKQIENKNKNIEELhqeNKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIidnyQKEIEDKKISEEKLLEE 676
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81295809 2761 LRHERLLTEQLSQRTQEAcvhqDTQAHHallqklkeeksRVVDLQAMLEKVQQQALHSQQQLEAEAQKHCEALRREKEVS 2840
Cdd:pfam05483 677 VEKAKAIADEAVKLQKEI----DKRCQH-----------KIAEMVALMEKHKHQYDKIIEERDSELGLYKNKEQEQSSAK 741
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 81295809 2841 ATLKSTVEALHTQKRELRCSLEREREKPAWLQAELEQSHPRLKEQE 2886
Cdd:pfam05483 742 AALEIELSNIKAELLSLKKQLEIEKEEKEKLKMEAKENTAILKDKK 787
|
|
| |
