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Conserved domains on  [gi|808697839|gb|AKD58678|]
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xylose isomerase [Spirosoma radiotolerans]

Protein Classification

sugar phosphate isomerase/epimerase family protein( domain architecture ID 11437618)

sugar phosphate isomerase/epimerase family protein belonging to the TIM alpha/beta barrel superfamily, similar to Bacillus subtilis inosose isomerase

CATH:  3.20.20.150
Gene Ontology:  GO:0016853|GO:0003824
PubMed:  11257493|12206759

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YcjR COG1082
Sugar phosphate isomerase/epimerase [Carbohydrate transport and metabolism];
21-248 8.95e-50

Sugar phosphate isomerase/epimerase [Carbohydrate transport and metabolism];


:

Pssm-ID: 440699 [Multi-domain]  Cd Length: 254  Bit Score: 164.80  E-value: 8.95e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808697839  21 ERLKNIGYDGIECFIDNQDVAAYHRFGDHLTQLGLQRTCVMVVGpdqNPVSESAKIREQAVSFLKEAIDRAHAMGATVIC 100
Cdd:COG1082   20 RAAAELGYDGVELAGGDLDEADLAELRAALADHGLEISSLHAPG---LNLAPDPEVREAALERLKRAIDLAAELGAKVVV 96

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808697839 101 gpMHSAFATFSRREPqPDEYARSAEVLHAAGEHAKQANIILAPEAlnrFECYLCNTMSQLLDLIRQADHPNVRAMFDTHH 180
Cdd:COG1082   97 --VHPGSPPPPDLPP-EEAWDRLAERLRELAELAEEAGVTLALEN---HEGTFVNTPEEALRLLEAVDSPNVGLLLDTGH 170

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 808697839 181 ANMEEKRFPDAIRTIAPVLAHVHISEND---RGTPGDGHIPWDDTFRTLAELNYNGWMTIEAFTRNDIDFA 248
Cdd:COG1082  171 ALLAGEDPVELLRKLGDRIKHVHLKDADgdqHLPPGEGDIDFAAILRALKEAGYDGWLSLEVESDPDDPEE 241
 
Name Accession Description Interval E-value
YcjR COG1082
Sugar phosphate isomerase/epimerase [Carbohydrate transport and metabolism];
21-248 8.95e-50

Sugar phosphate isomerase/epimerase [Carbohydrate transport and metabolism];


Pssm-ID: 440699 [Multi-domain]  Cd Length: 254  Bit Score: 164.80  E-value: 8.95e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808697839  21 ERLKNIGYDGIECFIDNQDVAAYHRFGDHLTQLGLQRTCVMVVGpdqNPVSESAKIREQAVSFLKEAIDRAHAMGATVIC 100
Cdd:COG1082   20 RAAAELGYDGVELAGGDLDEADLAELRAALADHGLEISSLHAPG---LNLAPDPEVREAALERLKRAIDLAAELGAKVVV 96

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808697839 101 gpMHSAFATFSRREPqPDEYARSAEVLHAAGEHAKQANIILAPEAlnrFECYLCNTMSQLLDLIRQADHPNVRAMFDTHH 180
Cdd:COG1082   97 --VHPGSPPPPDLPP-EEAWDRLAERLRELAELAEEAGVTLALEN---HEGTFVNTPEEALRLLEAVDSPNVGLLLDTGH 170

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 808697839 181 ANMEEKRFPDAIRTIAPVLAHVHISEND---RGTPGDGHIPWDDTFRTLAELNYNGWMTIEAFTRNDIDFA 248
Cdd:COG1082  171 ALLAGEDPVELLRKLGDRIKHVHLKDADgdqHLPPGEGDIDFAAILRALKEAGYDGWLSLEVESDPDDPEE 241
AP_endonuc_2 pfam01261
Xylose isomerase-like TIM barrel; This TIM alpha/beta barrel structure is found in xylose ...
 21-257 2.13e-43

Xylose isomerase-like TIM barrel; This TIM alpha/beta barrel structure is found in xylose isomerase and in endonuclease IV (EC:3.1.21.2). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae.


Pssm-ID: 426164 [Multi-domain]  Cd Length: 248  Bit Score: 148.29  E-value: 2.13e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808697839   21 ERLKNIGYDGIECFIDNQDVAAYH-----RFGDHLTQLGLQRTcVMVVGPDQNPVSESAKIREQAVSFLKEAIDRAHAMG 95
Cdd:pfam01261   2 AAAAELGFDGVELFTRRWFRPPLSdeeaeELKAALKEHGLEIV-VHAPYLGDNLASPDEEEREKAIDRLKRAIELAAALG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808697839   96 ATVIcgPMHSAFAtfsRREPQPDEYARSAEVLHAAGEHAKQANIILAPEALNRFECYLCNTMSQLLDLIRQADHPNVRAM 175
Cdd:pfam01261  81 AKLV--VFHPGSD---LGDDPEEALARLAESLRELADLAEREGVRLALEPLAGKGTNVGNTFEEALEIIDEVDSPNVGVC 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808697839  176 FDTHHANMEEKRFPDAIRTIAPVLAHVHISEN--------DRGTP-GDGHIPWDDTFRTLAELNYNGWMTIEAFTRNDID 246
Cdd:pfam01261 156 LDTGHLFAAGDGDLFELRLGDRYIGHVHLKDSknplgsgpDRHVPiGEGVIDFEALFRALKEIGYDGPLSLETFNDGPPE 235

                         250
                  ....*....|...
gi 808697839  247 --FANSINVWREY 257
Cdd:pfam01261 236 egAREGLEWLREL 248
PRK09856 PRK09856
fructoselysine 3-epimerase; Provisional
 73-241 1.37e-12

fructoselysine 3-epimerase; Provisional


Pssm-ID: 182116  Cd Length: 275  Bit Score: 66.40  E-value: 1.37e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808697839  73 SAKIREQAVSFLKEAIDRAHAMGAT-VICGPMHSAFATfsrrepQPDE-YARSAEVLHAAGEHAKQANIILAPEALNRFE 150
Cdd:PRK09856  81 DEHMRRESLDMIKLAMDMAKEMNAGyTLISAAHAGYLT------PPNViWGRLAENLSELCEYAENIGMDLILEPLTPYE 154

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808697839 151 CYLCNTMSQLLDLIRQADHPNVRAMFDTHHANMEEKRFPDAIRTIAPVLAHVHISENDRGT-----PGDGHIPWDDTFRT 225
Cdd:PRK09856 155 SNVVCNANDVLHALALVPSPRLFSMVDICAPYVQAEPVMSYFDKLGDKLRHLHIVDSDGASdthyiPGEGKMPLRELMRD 234

                        170
                 ....*....|....*.
gi 808697839 226 LAELNYNGWMTIEAFT 241
Cdd:PRK09856 235 IIDRGYEGYCTVELVT 250
AP2Ec cd00019
AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester ...
 13-233 2.78e-12

AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.


Pssm-ID: 237986  Cd Length: 279  Bit Score: 65.42  E-value: 2.78e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808697839  13 SEKLNPITERLKNIGYDGIECFIDNQDVAA--------YHRFGDHLTQLGLQrtCVMVVGPDQ-NPVSESAKIREQAVSF 83
Cdd:cd00019    9 GFGLENALKRAKEIGFDTVAMFLGNPRSWLsrplkkerAEKFKAIAEEGPSI--CLSVHAPYLiNLASPDKEKREKSIER 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808697839  84 LKEAIDRAHAMGATVICgpMHSAFATfsrREPQPDEYARSAEVLHAAGEHAKQANIILAPEALNRFECYLCNTMSQLLDL 163
Cdd:cd00019   87 LKDEIERCEELGIRLLV--FHPGSYL---GQSKEEGLKRVIEALNELIDKAETKGVVIALETMAGQGNEIGSSFEELKEI 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808697839 164 IRQAD-HPNVRAMFDTHHA-----------NMEE--KRFPDAIRTIAPVLAHVHISENDRGTPGD-------GHIPWDDT 222
Cdd:cd00019  162 IDLIKeKPRVGVCIDTCHIfaagydistveGFEKvlEEFDKVIGLEYLKAIHLNDSKGELGSGKDrhepigeGDIDGEEL 241

                        250
                 ....*....|.
gi 808697839 223 FRTLAELNYNG 233
Cdd:cd00019  242 FKELKKDPYQN 252
myo_inos_iolE TIGR04379
myo-inosose-2 dehydratase; Members of this family include the enzyme myo-inosose-2 dehydratase, ...
 68-239 1.82e-07

myo-inosose-2 dehydratase; Members of this family include the enzyme myo-inosose-2 dehydratase, product of the gene iolE, as found in inositol utilization cassettes in many species. [Energy metabolism, Sugars]


Pssm-ID: 275172  Cd Length: 290  Bit Score: 51.12  E-value: 1.82e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808697839   68 NPVSESAKIREQAVSFLKeaidrahAMGATVIC-----GPMHSAFAT--FSRREPQPDEYARSAEVLHAAGEHAKQANII 140
Cdd:TIGR04379  76 RSVEEEIEAFRPHLEFLK-------AMGAKVIVvcetgGSIQGDPDTplSDRPVLTDEEWERLGEGLNRLGEIAAEQGMK 148

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808697839  141 LA-----------PEALNRFecylcntMSQlldlirqADHPNVRAMFDTHHA--------NMEEKrFPDAIrtiapvlAH 201
Cdd:TIGR04379 149 LAyhhhmgtvvetEEEIDRL-------MAM-------TDPELVGLLYDTGHAtfaggdplAVLEK-HGDRI-------VH 206

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 808697839  202 VHISENDRGT----------------------PGDGHIPWDDTFRTLAELNYNGWMTIEA 239
Cdd:TIGR04379 207 VHLKDVRPEVlervrnedlsfldavlkgvftvPGDGCIDFAPIFAALAARDYEGWIVVEA 266
AP2Ec smart00518
AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester ...
 68-218 6.12e-03

AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites


Pssm-ID: 214707  Cd Length: 273  Bit Score: 37.28  E-value: 6.12e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808697839    68 NPVSESAKIREQAVSFLKEAIDRAHAMGATVICgpMHSAFATFSRREpqpDEYARSAEVLHAAGEHaKQANIILAPEALN 147
Cdd:smart00518  70 NLASPDKEKVEKSIERLIDEIKRCEELGIKALV--FHPGSYLKQSKE---EALNRIIESLNEVIDE-TKGVVILLETTAG 143

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808697839   148 RFECyLCNTMSQL---LDLIRqaDHPNVRAMFDTHHAN------MEEKRFPDAIRTIAPVLA-------HVHISENDRGT 211
Cdd:smart00518 144 KGSQ-IGSTFEDLkeiIDLIK--ELDRIGVCIDTCHIFaagydiNTVEGFEKVLEEFENVLGleylkaiHLNDSKIELGS 220


                   ....*..
gi 808697839   212 PGDGHIP 218
Cdd:smart00518 221 GKDRHEN 227
 
Name Accession Description Interval E-value
YcjR COG1082
Sugar phosphate isomerase/epimerase [Carbohydrate transport and metabolism];
21-248 8.95e-50

Sugar phosphate isomerase/epimerase [Carbohydrate transport and metabolism];


Pssm-ID: 440699 [Multi-domain]  Cd Length: 254  Bit Score: 164.80  E-value: 8.95e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808697839  21 ERLKNIGYDGIECFIDNQDVAAYHRFGDHLTQLGLQRTCVMVVGpdqNPVSESAKIREQAVSFLKEAIDRAHAMGATVIC 100
Cdd:COG1082   20 RAAAELGYDGVELAGGDLDEADLAELRAALADHGLEISSLHAPG---LNLAPDPEVREAALERLKRAIDLAAELGAKVVV 96

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808697839 101 gpMHSAFATFSRREPqPDEYARSAEVLHAAGEHAKQANIILAPEAlnrFECYLCNTMSQLLDLIRQADHPNVRAMFDTHH 180
Cdd:COG1082   97 --VHPGSPPPPDLPP-EEAWDRLAERLRELAELAEEAGVTLALEN---HEGTFVNTPEEALRLLEAVDSPNVGLLLDTGH 170

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 808697839 181 ANMEEKRFPDAIRTIAPVLAHVHISEND---RGTPGDGHIPWDDTFRTLAELNYNGWMTIEAFTRNDIDFA 248
Cdd:COG1082  171 ALLAGEDPVELLRKLGDRIKHVHLKDADgdqHLPPGEGDIDFAAILRALKEAGYDGWLSLEVESDPDDPEE 241
AP_endonuc_2 pfam01261
Xylose isomerase-like TIM barrel; This TIM alpha/beta barrel structure is found in xylose ...
 21-257 2.13e-43

Xylose isomerase-like TIM barrel; This TIM alpha/beta barrel structure is found in xylose isomerase and in endonuclease IV (EC:3.1.21.2). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae.


Pssm-ID: 426164 [Multi-domain]  Cd Length: 248  Bit Score: 148.29  E-value: 2.13e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808697839   21 ERLKNIGYDGIECFIDNQDVAAYH-----RFGDHLTQLGLQRTcVMVVGPDQNPVSESAKIREQAVSFLKEAIDRAHAMG 95
Cdd:pfam01261   2 AAAAELGFDGVELFTRRWFRPPLSdeeaeELKAALKEHGLEIV-VHAPYLGDNLASPDEEEREKAIDRLKRAIELAAALG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808697839   96 ATVIcgPMHSAFAtfsRREPQPDEYARSAEVLHAAGEHAKQANIILAPEALNRFECYLCNTMSQLLDLIRQADHPNVRAM 175
Cdd:pfam01261  81 AKLV--VFHPGSD---LGDDPEEALARLAESLRELADLAEREGVRLALEPLAGKGTNVGNTFEEALEIIDEVDSPNVGVC 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808697839  176 FDTHHANMEEKRFPDAIRTIAPVLAHVHISEN--------DRGTP-GDGHIPWDDTFRTLAELNYNGWMTIEAFTRNDID 246
Cdd:pfam01261 156 LDTGHLFAAGDGDLFELRLGDRYIGHVHLKDSknplgsgpDRHVPiGEGVIDFEALFRALKEIGYDGPLSLETFNDGPPE 235

                         250
                  ....*....|...
gi 808697839  247 --FANSINVWREY 257
Cdd:pfam01261 236 egAREGLEWLREL 248
Hyi COG3622
Hydroxypyruvate/dehydroerythronate isomerase, Hyi/OtnI family [Carbohydrate transport and ...
 18-235 1.35e-26

Hydroxypyruvate/dehydroerythronate isomerase, Hyi/OtnI family [Carbohydrate transport and metabolism];


Pssm-ID: 442840  Cd Length: 260  Bit Score: 104.42  E-value: 1.35e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808697839  18 PITERL---KNIGYDGIEC-FIDNQDVAAyhrFGDHLTQLGLqrTCVMVVGPdqnPVSESAKIR---------EQAVSFL 84
Cdd:COG3622   16 PFLDRFaaaAAAGFDAVEFlFPYDRPAEE---IAAALKKHGL--TLVLFNLP---AGDWAAGERglaalpgreAEFRAGV 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808697839  85 KEAIDRAHAMGAT-VICgpmhsafatFS--RREPQPDEYARS--AEVLHAAGEHAKQANIILAPEALNRFEC--YLCNTM 157
Cdd:COG3622   88 DRALEYAAALGCKnLHV---------MAgnRPRGLDDEAALAtfVENLRYAADLAAPHGITLLIEPLNSRDHpgYFLDTT 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808697839 158 SQLLDLIRQADHPNVRAMFDTHHA-NMEEkrfpDAIRTI---APVLAHVHISEN-DRGTPGDGHIPWDDTFRTLAELNYN 232
Cdd:COG3622  159 AQAVAIIEAVGSPNLKLLYDIYHMqIMEG----DLIRTIrrhLPRIGHVQIADVpGRHEPGTGELNYPAIFKALDALGYD 234


                 ...
gi 808697839 233 GWM 235
Cdd:COG3622  235 GWV 237
PRK09856 PRK09856
fructoselysine 3-epimerase; Provisional
 73-241 1.37e-12

fructoselysine 3-epimerase; Provisional


Pssm-ID: 182116  Cd Length: 275  Bit Score: 66.40  E-value: 1.37e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808697839  73 SAKIREQAVSFLKEAIDRAHAMGAT-VICGPMHSAFATfsrrepQPDE-YARSAEVLHAAGEHAKQANIILAPEALNRFE 150
Cdd:PRK09856  81 DEHMRRESLDMIKLAMDMAKEMNAGyTLISAAHAGYLT------PPNViWGRLAENLSELCEYAENIGMDLILEPLTPYE 154

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808697839 151 CYLCNTMSQLLDLIRQADHPNVRAMFDTHHANMEEKRFPDAIRTIAPVLAHVHISENDRGT-----PGDGHIPWDDTFRT 225
Cdd:PRK09856 155 SNVVCNANDVLHALALVPSPRLFSMVDICAPYVQAEPVMSYFDKLGDKLRHLHIVDSDGASdthyiPGEGKMPLRELMRD 234

                        170
                 ....*....|....*.
gi 808697839 226 LAELNYNGWMTIEAFT 241
Cdd:PRK09856 235 IIDRGYEGYCTVELVT 250
AP2Ec cd00019
AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester ...
 13-233 2.78e-12

AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.


Pssm-ID: 237986  Cd Length: 279  Bit Score: 65.42  E-value: 2.78e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808697839  13 SEKLNPITERLKNIGYDGIECFIDNQDVAA--------YHRFGDHLTQLGLQrtCVMVVGPDQ-NPVSESAKIREQAVSF 83
Cdd:cd00019    9 GFGLENALKRAKEIGFDTVAMFLGNPRSWLsrplkkerAEKFKAIAEEGPSI--CLSVHAPYLiNLASPDKEKREKSIER 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808697839  84 LKEAIDRAHAMGATVICgpMHSAFATfsrREPQPDEYARSAEVLHAAGEHAKQANIILAPEALNRFECYLCNTMSQLLDL 163
Cdd:cd00019   87 LKDEIERCEELGIRLLV--FHPGSYL---GQSKEEGLKRVIEALNELIDKAETKGVVIALETMAGQGNEIGSSFEELKEI 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808697839 164 IRQAD-HPNVRAMFDTHHA-----------NMEE--KRFPDAIRTIAPVLAHVHISENDRGTPGD-------GHIPWDDT 222
Cdd:cd00019  162 IDLIKeKPRVGVCIDTCHIfaagydistveGFEKvlEEFDKVIGLEYLKAIHLNDSKGELGSGKDrhepigeGDIDGEEL 241

                        250
                 ....*....|.
gi 808697839 223 FRTLAELNYNG 233
Cdd:cd00019  242 FKELKKDPYQN 252
PRK09997 PRK09997
hydroxypyruvate isomerase; Provisional
 120-238 3.71e-11

hydroxypyruvate isomerase; Provisional


Pssm-ID: 182188  Cd Length: 258  Bit Score: 61.90  E-value: 3.71e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808697839 120 YARSAEVLHAAGEHAKQANIILAPEALNRFEC--YLCNTMSQLLDLIRQADHPNVRAMFDTHHANMEEKRFPDAIRTIAP 197
Cdd:PRK09997 119 HATLVENLRYAANMLMKEDILLLIEPINHFDIpgFHLTGTRQALKLIDDVGCCNLKIQYDIYHMQRMEGELTNTMTQWAD 198

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 808697839 198 VLAHVHISEN-DRGTPGDGHIPWDDTFRTLAELNYNGWMTIE 238
Cdd:PRK09997 199 KIGHLQIADNpHRGEPGTGEINYDYLFKVIENSDYNGWVGCE 240
PRK09989 PRK09989
HPr family phosphocarrier protein;
152-255 6.80e-11

HPr family phosphocarrier protein;


Pssm-ID: 182185  Cd Length: 258  Bit Score: 61.20  E-value: 6.80e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808697839 152 YLCNTMSQLLDLIRQADHPNVRAMFDTHHANMEEKRFPDAIRTIAPVLAHVHI-SENDRGTPGDGHI--PWddTFRTLAE 228
Cdd:PRK09989 153 YLFSSQYQALAIVEEVARDNVFIQLDTFHAQKVDGNLTHLIRDYAGKYAHVQIaGLPDRHEPDDGEInyPW--LFRLFDE 230

                         90       100
                 ....*....|....*....|....*...
gi 808697839 229 LNYNGWMTIEAFTRNDI-DFANSINVWR 255
Cdd:PRK09989 231 VGYQGWIGCEYKPRGLTeEGLGWFDAWR 258
PRK13209 PRK13209
L-ribulose-5-phosphate 3-epimerase;
71-238 5.49e-10

L-ribulose-5-phosphate 3-epimerase;


Pssm-ID: 237307  Cd Length: 283  Bit Score: 58.85  E-value: 5.49e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808697839  71 SESAKIREQAVSFLKEAIDRAHAMGATVIcgpmhsAFATFSRREPQPDEYARS--AEVLHAAGEHAKQANIILAPEALNR 148
Cdd:PRK13209  88 SEDDAVRAQALEIMRKAIQLAQDLGIRVI------QLAGYDVYYEQANNETRRrfIDGLKESVELASRASVTLAFEIMDT 161

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808697839 149 FecyLCNTMSQLLDLIRQADHPNVRAMFDTHHANMEEKRFPDAIRTIAPVLAHVHISENDRGTP-----GDGHIPWDDTF 223
Cdd:PRK13209 162 P---FMNSISKALGYAHYLNSPWFQLYPDIGNLSAWDNDVQMELQAGIGHIVAFHVKDTKPGVFknvpfGEGVVDFERCF 238

                        170
                 ....*....|....*
gi 808697839 224 RTLAELNYNGWMTIE 238
Cdd:PRK13209 239 KTLKQSGYCGPYLIE 253
PRK13210 PRK13210
L-ribulose-5-phosphate 3-epimerase;
71-251 1.13e-07

L-ribulose-5-phosphate 3-epimerase;


Pssm-ID: 237308  Cd Length: 284  Bit Score: 51.83  E-value: 1.13e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808697839  71 SESAKIREQAVSFLKEAIDRAHAMGATVIcgpmhsAFATFS-RREPQPDE-YARSAEVLHAAGEHAKQANIILAPEALNr 148
Cdd:PRK13210  83 SRDPATRERALEIMKKAIRLAQDLGIRTI------QLAGYDvYYEEKSEEtRQRFIEGLAWAVEQAAAAQVMLAVEIMD- 155

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808697839 149 fECYLcNTMSQLLDLIRQADHPNVRAMFDT-----HHANMEEKrFPDAIRTIAPVlaHV----HISENDRG-----TPGD 214
Cdd:PRK13210 156 -TPFM-NSISKWKKWDKEIDSPWLTVYPDVgnlsaWGNDVWSE-LKLGIDHIAAI--HLkdtyAVTETSKGqfrdvPFGE 230

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 808697839 215 GHIPWDDTFRTLAELNYNGWMTIEAFTRNDIDFANSI 251
Cdd:PRK13210 231 GCVDFVGIFKTLKELNYRGPFLIEMWTEKAEEPRAEI 267
myo_inos_iolE TIGR04379
myo-inosose-2 dehydratase; Members of this family include the enzyme myo-inosose-2 dehydratase, ...
 68-239 1.82e-07

myo-inosose-2 dehydratase; Members of this family include the enzyme myo-inosose-2 dehydratase, product of the gene iolE, as found in inositol utilization cassettes in many species. [Energy metabolism, Sugars]


Pssm-ID: 275172  Cd Length: 290  Bit Score: 51.12  E-value: 1.82e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808697839   68 NPVSESAKIREQAVSFLKeaidrahAMGATVIC-----GPMHSAFAT--FSRREPQPDEYARSAEVLHAAGEHAKQANII 140
Cdd:TIGR04379  76 RSVEEEIEAFRPHLEFLK-------AMGAKVIVvcetgGSIQGDPDTplSDRPVLTDEEWERLGEGLNRLGEIAAEQGMK 148

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808697839  141 LA-----------PEALNRFecylcntMSQlldlirqADHPNVRAMFDTHHA--------NMEEKrFPDAIrtiapvlAH 201
Cdd:TIGR04379 149 LAyhhhmgtvvetEEEIDRL-------MAM-------TDPELVGLLYDTGHAtfaggdplAVLEK-HGDRI-------VH 206

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 808697839  202 VHISENDRGT----------------------PGDGHIPWDDTFRTLAELNYNGWMTIEA 239
Cdd:TIGR04379 207 VHLKDVRPEVlervrnedlsfldavlkgvftvPGDGCIDFAPIFAALAARDYEGWIVVEA 266
AP2Ec smart00518
AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester ...
 68-218 6.12e-03

AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites


Pssm-ID: 214707  Cd Length: 273  Bit Score: 37.28  E-value: 6.12e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808697839    68 NPVSESAKIREQAVSFLKEAIDRAHAMGATVICgpMHSAFATFSRREpqpDEYARSAEVLHAAGEHaKQANIILAPEALN 147
Cdd:smart00518  70 NLASPDKEKVEKSIERLIDEIKRCEELGIKALV--FHPGSYLKQSKE---EALNRIIESLNEVIDE-TKGVVILLETTAG 143

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808697839   148 RFECyLCNTMSQL---LDLIRqaDHPNVRAMFDTHHAN------MEEKRFPDAIRTIAPVLA-------HVHISENDRGT 211
Cdd:smart00518 144 KGSQ-IGSTFEDLkeiIDLIK--ELDRIGVCIDTCHIFaagydiNTVEGFEKVLEEFENVLGleylkaiHLNDSKIELGS 220


                   ....*..
gi 808697839   212 PGDGHIP 218
Cdd:smart00518 221 GKDRHEN 227
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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